From 2ad0292292ab9dbfa139ad44f9f9f13dc51b2eb6 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Sat, 7 Jan 2017 18:24:34 -0800 Subject: [PATCH] refreshing ENVO with https://github.com/EnvironmentOntology/envo/releases/tag/v2017-01-07 This fixes the bug whereby ENVO was injecting a bad axiom into PATO --- src/ontology/imports/envo_import.owl | 1081 +++++++++++----------------------- 1 file changed, 358 insertions(+), 723 deletions(-) diff --git a/src/ontology/imports/envo_import.owl b/src/ontology/imports/envo_import.owl index 5a83a50..55429a3 100644 --- a/src/ontology/imports/envo_import.owl +++ b/src/ontology/imports/envo_import.owl @@ -315,38 +315,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - true - - - - @@ -444,27 +412,6 @@ - - - - - - - - - - - - - - - - - true - - - - @@ -505,14 +452,6 @@ - - - - - - - - @@ -543,58 +482,12 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - @@ -646,6 +539,7 @@ + An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. continuant @@ -665,6 +559,7 @@ + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. independent continuant @@ -685,6 +580,7 @@ + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. realizable entity @@ -2212,12 +2108,6 @@ resulting from the influence of human beings on nature. - - sea - USGS:SDTS - - - Continuous saline-water bodies that surround the continents and fill the Earth's great depressions. ADL:FTT @@ -2240,6 +2130,12 @@ resulting from the influence of human beings on nature. ocean region ADL:FTT + + + + sea + USGS:SDTS + @@ -2266,6 +2162,24 @@ resulting from the influence of human beings on nature. + + open sea + USGS:SDTS + + + + + open sound + USGS:SDTS + + + + + open water + USGS:SDTS + + + A large expanse of saline water usually connected with an ocean. https://en.wikipedia.org/wiki/Sea @@ -2300,24 +2214,6 @@ resulting from the influence of human beings on nature. marginal sea USGS:SDTS - - - - open sea - USGS:SDTS - - - - - open sound - USGS:SDTS - - - - - open water - USGS:SDTS - @@ -3421,6 +3317,43 @@ resulting from the influence of human beings on nature. + + + + + A dense growth of shrubbery planted as a fence or boundary. + HEDGE + hedgerow + shelter belt + hedge + + + + + A dense growth of shrubbery planted as a fence or boundary. + USGS:SDTS + + + + + HEDGE + USGS:SDTS + + + + + hedgerow + USGS:SDTS + + + + + shelter belt + USGS:SDTS + + + + @@ -4435,644 +4368,152 @@ resulting from the influence of human beings on nature. - dale - USGS:SDTS - - - - - glacial gorge - USGS:SDTS - - - - - glacial trough - USGS:SDTS - - - - - gulch - USGS:SDTS - - - - - gully - Getty:TGN - - - - - gully - USGS:SDTS - - - - - median valley - ADL:FTT - - - - - median valley - Geonames:feature - - - - - shelf valley - Geonames:feature - - - - - glen - ADL:FTT - - - - - glen - USGS:SDTS - - - - - goe - USGS:SDTS - - - - - gorge - Geonames:feature - - - - - gorge - USGS:SDTS - - - - - graben - USGS:SDTS - - - - - hollow - ADL:FTT - - - - - hollow - Getty:TGN - - - - - hollow - USGS:SDTS - - - - - moat - USGS:SDTS - - - - - ravine - USGS:SDTS - - - - - re-entrant - USGS:SDTS - - - - - seachannel - USGS:SDTS - - - - - strath - USGS:SDTS - - - - - trench - USGS:SDTS - - - - - water gap - USGS:SDTS - - - - - - - - - basin - escarpment - fan - flat - fork - forks - furrow - gap - gully - hole - hole (seafloor) - ledge - levee - median valley - moat (seafloor) - pinnacle - plain - plateau - platform - province - ramp - ramp (seafloor) - ravine - ridge - ridges - rise - rise (seafloor) - saddle - shelf edge - undersea bank - undersea basin - undersea bench - undersea cliff - undersea fan - undersea fork - undersea fracture zone - undersea furrow - undersea gap - undersea hole - undersea ledge - undersea levee - undersea median valley - undersea moat - undersea peak - undersea pinnacle - undersea plain - undersea platform - undersea ramp - undersea rise - undersea saddle - undersea shelf - undersea shelf edge - undersea shelf valley - undersea sill - undersea slope - undersea spur - undersea terrace - undersea tongue - undersea valley - ocean floor feature - seafloor feature - sill - spur - subsea feature - terrace - tongue (seafloor) - underwater feature - valley - valleys - undersea feature - - - - - basin - Geonames:feature - - - - - escarpment - Geonames:feature - - - - - fan - Geonames:feature - - - - - flat - Geonames:feature - - - - - fork - Geonames:feature - - - - - forks - Geonames:feature - - - - - furrow - Geonames:feature - - - - - gap - Geonames:feature - - - - - gully - Geonames:feature - - - - - hole - Geonames:feature - - - - - hole (seafloor) - ADL:FTT - - - - - ledge - Geonames:feature - - - - - levee - Geonames:feature - - - - - median valley - Geonames:feature - - - - - moat (seafloor) - ADL:FTT - - - - - pinnacle - Geonames:feature - - - - - plain - Geonames:feature - - - - - plateau - Geonames:feature - - - - - platform - Geonames:feature - - - - - province - Geonames:feature - - - - - ramp - Geonames:feature - - - - - ramp (seafloor) - ADL:FTT - - - - - ravine - Geonames:feature - - - - - ridge - Geonames:feature - - - - - ridges - Geonames:feature - - - - - rise - Geonames:feature - - - - - rise (seafloor) - ADL:FTT - - - - - saddle - Geonames:feature - - - - - shelf edge - Geonames:feature - - - - - undersea bank - Getty:TGN - - - - - undersea basin - Getty:TGN - - - - - undersea bench - Getty:TGN - - - - - undersea cliff - Getty:TGN - - - - - undersea fan - Getty:TGN - - - - - undersea fork - Getty:TGN - - - - - undersea fracture zone - Getty:TGN - - - - - undersea furrow - Getty:TGN - - - - - undersea gap - Getty:TGN - - - - - undersea hole - Getty:TGN - - - - - undersea ledge - Getty:TGN - - - - - undersea levee - Getty:TGN - - - - - undersea median valley - Getty:TGN - - - - - undersea moat - Getty:TGN - - - - - undersea peak - Getty:TGN - - - - - undersea pinnacle - Getty:TGN + dale + USGS:SDTS - + - undersea plain - Getty:TGN + glacial gorge + USGS:SDTS - + - undersea platform - Getty:TGN + glacial trough + USGS:SDTS - + - undersea ramp - Getty:TGN + gulch + USGS:SDTS - + - undersea rise + gully Getty:TGN - + - undersea saddle - Getty:TGN + gully + USGS:SDTS - + - undersea shelf - Getty:TGN + median valley + ADL:FTT - + - undersea shelf edge - Getty:TGN + median valley + Geonames:feature - + - undersea shelf valley - Getty:TGN + shelf valley + Geonames:feature - - - undersea sill - Getty:TGN + + + glen + ADL:FTT - - - undersea slope - Getty:TGN + + + glen + USGS:SDTS - - - undersea spur - Getty:TGN + + + goe + USGS:SDTS - - - undersea terrace - Getty:TGN + + + gorge + Geonames:feature - - - undersea tongue - Getty:TGN + + + gorge + USGS:SDTS - - - undersea valley - Getty:TGN + + + graben + USGS:SDTS - + - ocean floor feature + hollow ADL:FTT - + - seafloor feature - ADL:FTT + hollow + Getty:TGN - + - sill - Geonames:feature + hollow + USGS:SDTS - + - spur - Geonames:feature + moat + USGS:SDTS - + - subsea feature - ADL:FTT + ravine + USGS:SDTS - + - terrace - Geonames:feature + re-entrant + USGS:SDTS - + - tongue (seafloor) - ADL:FTT + seachannel + USGS:SDTS - + - underwater feature - ADL:FTT + strath + USGS:SDTS - + - valley - Geonames:feature + trench + USGS:SDTS - + - valleys - Geonames:feature + water gap + USGS:SDTS @@ -6379,6 +5820,97 @@ resulting from the influence of human beings on nature. + + + + + An artificial slope or wall, usually earthen, which parallels the course of a river, built for the purpose of containing the river. + EMBANKMENT + REVETMENT + berm + dike + dike (manmade) + dyke + embankment + levee + revetment + levee + + + + + An artificial slope or wall, usually earthen, which parallels the course of a river, built for the purpose of containing the river. + https://en.wikipedia.org/wiki/Levee + + + + + EMBANKMENT + USGS:SDTS + + + + + REVETMENT + USGS:SDTS + + + + + berm + ADL:FTT + + + + + dike + Geonames:feature + + + + + dike + Getty:TGN + + + + + dike + USGS:SDTS + + + + + dike (manmade) + ADL:FTT + + + + + dyke + USGS:SDTS + + + + + embankment + ADL:FTT + + + + + levee + Geonames:feature + + + + + revetment + ADL:FTT + + + + @@ -7065,6 +6597,56 @@ resulting from the influence of human beings on nature. + + + + + A transition zone between different physiogeographic provinces that involves an elevation differential, often involving high cliffs. Most commonly a transition from one series of sedimentary rocks to another series of a different age and composition. In such cases, the escarpment usually represents the line of erosional loss of the newer rock over the older. + escarpment + scarp + cliff + cuesta + escarpment + + + + + A transition zone between different physiogeographic provinces that involves an elevation differential, often involving high cliffs. Most commonly a transition from one series of sedimentary rocks to another series of a different age and composition. In such cases, the escarpment usually represents the line of erosional loss of the newer rock over the older. + https://en.wikipedia.org/wiki/Escarpment + + + + + escarpment + Geonames:feature + + + + + cliff + USGS:SDTS + + + + + cuesta + ADL:FTT + + + + + cuesta + Geonames:feature + + + + + cuesta + Getty:TGN + + + + @@ -7226,6 +6808,77 @@ resulting from the influence of human beings on nature. + + + + + An extent or area of land where surface water from rain and melting snow or ice converges to a single point at lower elevation, usually the exit of the basin, where the waters join another waterbody. + Basin + CATCHMENT + Catchment + Watershed + catchment + drainage basin + watershed + drainage basin + + + + + An extent or area of land where surface water from rain and melting snow or ice converges to a single point at lower elevation, usually the exit of the basin, where the waters join another waterbody. + https://en.wikipedia.org/wiki/Drainage_basin + + + + + Basin + NASA:earthrealm + + + + + CATCHMENT + USGS:SDTS + + + + + Catchment + NASA:earthrealm + + + + + Watershed + NASA:earthrealm + + + + + catchment + ADL:FTT + + + + + catchment + USGS:SDTS + + + + + drainage basin + Geonames:feature + + + + + watershed + ADL:FTT + + + + @@ -9559,13 +9212,13 @@ resulting from the influence of human beings on nature. - A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water. + A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water. clay - A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water. + A group of hydrous aluminium phyllosilicate (phyllosilicates being a subgroup of silicate minerals) minerals (see clay minerals), that are typically less than 2 micrometres in diameter. Clay consists of a variety of phyllosilicate minerals rich in silicon and aluminium oxides and hydroxides which include variable amounts of structural water. https://en.wikipedia.org/wiki/Clay @@ -9590,13 +9243,7 @@ resulting from the influence of human beings on nature. - - - - - - - + animal manure @@ -13783,20 +13430,8 @@ resulting from the influence of human beings on nature. - - - - - - - - - - - - increased object quality @@ -13839,5 +13474,5 @@ resulting from the influence of human beings on nature. - +