From d6202e905b15b92f6bfd6c3e99da9740e6498d09 Mon Sep 17 00:00:00 2001 From: rvalieris Date: Fri, 23 Jun 2017 10:35:14 -0300 Subject: [PATCH 1/6] try build r-spp & bioconductor-motiv --- sorted-r-blacklist | 4 ---- 1 file changed, 4 deletions(-) diff --git a/sorted-r-blacklist b/sorted-r-blacklist index bcf3d90df0..a5a2a45c63 100644 --- a/sorted-r-blacklist +++ b/sorted-r-blacklist @@ -5,10 +5,6 @@ recipes/cap-mirseq # conflicts with recent Rcpp version recipes/r-histonehmm -# error: the built package <> cannot be found -recipes/r-spp -recipes/bioconductor-motiv - # depends on bioconductor-motiv recipes/bioconductor-motifbreakr recipes/bioconductor-motifstack From 67301eb36486a462a48104fee50fe62df670bc68 Mon Sep 17 00:00:00 2001 From: rvalieris Date: Fri, 23 Jun 2017 11:40:55 -0300 Subject: [PATCH 2/6] skip motiv on osx --- recipes/bioconductor-motiv/meta.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/recipes/bioconductor-motiv/meta.yaml b/recipes/bioconductor-motiv/meta.yaml index 384e0328b2..e74e357ca1 100644 --- a/recipes/bioconductor-motiv/meta.yaml +++ b/recipes/bioconductor-motiv/meta.yaml @@ -13,6 +13,7 @@ source: build: string: bioconductor_{{CONDA_R}}_gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}} number: 0 + skip: True # [osx] rpaths: - lib/R/lib/ - lib/ From bba5d54a519a82ee221cab1328290cc00cc03455 Mon Sep 17 00:00:00 2001 From: rvalieris Date: Fri, 23 Jun 2017 14:07:29 -0300 Subject: [PATCH 3/6] try osx --- recipes/bioconductor-motiv/meta.yaml | 4 ++-- recipes/r-multicool/meta.yaml | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/recipes/bioconductor-motiv/meta.yaml b/recipes/bioconductor-motiv/meta.yaml index e74e357ca1..73095fee58 100644 --- a/recipes/bioconductor-motiv/meta.yaml +++ b/recipes/bioconductor-motiv/meta.yaml @@ -13,7 +13,7 @@ source: build: string: bioconductor_{{CONDA_R}}_gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}} number: 0 - skip: True # [osx] +# skip: True # [osx] rpaths: - lib/R/lib/ - lib/ @@ -29,7 +29,7 @@ requirements: - gsl {{CONDA_GSL}}* - r-lattice - gcc # [linux] - - llvm # [osx] +# - llvm # [osx] run: - 'bioconductor-biocgenerics >=0.1.0' diff --git a/recipes/r-multicool/meta.yaml b/recipes/r-multicool/meta.yaml index b30c1f064e..36921ca262 100644 --- a/recipes/r-multicool/meta.yaml +++ b/recipes/r-multicool/meta.yaml @@ -11,7 +11,7 @@ source: build: number: 0 # segmentation fault on osx - skip: True # [osx] +# skip: True # [osx] rpaths: - lib/R/lib/ @@ -23,7 +23,7 @@ requirements: - r-base - r-rcpp >=0.11.2 - gcc # [not osx] - - llvm # [osx] +# - llvm # [osx] run: - r-base From 576204d0ae0e1d5554795c26ab91e4d9bcc48b7d Mon Sep 17 00:00:00 2001 From: rvalieris Date: Fri, 23 Jun 2017 14:48:02 -0300 Subject: [PATCH 4/6] try r-ks on osx --- recipes/bioconductor-motiv/meta.yaml | 2 +- recipes/r-ks/meta.yaml | 2 +- recipes/r-multicool/meta.yaml | 3 --- 3 files changed, 2 insertions(+), 5 deletions(-) diff --git a/recipes/bioconductor-motiv/meta.yaml b/recipes/bioconductor-motiv/meta.yaml index 73095fee58..145317a358 100644 --- a/recipes/bioconductor-motiv/meta.yaml +++ b/recipes/bioconductor-motiv/meta.yaml @@ -13,7 +13,7 @@ source: build: string: bioconductor_{{CONDA_R}}_gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}} number: 0 -# skip: True # [osx] + skip: True # [osx] rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-ks/meta.yaml b/recipes/r-ks/meta.yaml index 07fbbdf05b..f606a90336 100644 --- a/recipes/r-ks/meta.yaml +++ b/recipes/r-ks/meta.yaml @@ -13,7 +13,7 @@ source: build: number: 0 - skip: True # [osx] +# skip: True # [osx] rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-multicool/meta.yaml b/recipes/r-multicool/meta.yaml index 36921ca262..8a3db7c9c9 100644 --- a/recipes/r-multicool/meta.yaml +++ b/recipes/r-multicool/meta.yaml @@ -10,8 +10,6 @@ source: build: number: 0 - # segmentation fault on osx -# skip: True # [osx] rpaths: - lib/R/lib/ @@ -23,7 +21,6 @@ requirements: - r-base - r-rcpp >=0.11.2 - gcc # [not osx] -# - llvm # [osx] run: - r-base From c9bdec24b5c43d5a65a03892e375d74c172b1847 Mon Sep 17 00:00:00 2001 From: rvalieris Date: Fri, 23 Jun 2017 15:55:18 -0300 Subject: [PATCH 5/6] try bioconductor-motifstack --- recipes/bioconductor-motifstack/meta.yaml | 1 + recipes/r-ks/meta.yaml | 2 +- sorted-r-blacklist | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/recipes/bioconductor-motifstack/meta.yaml b/recipes/bioconductor-motifstack/meta.yaml index b86dc8433c..3d07012e47 100644 --- a/recipes/bioconductor-motifstack/meta.yaml +++ b/recipes/bioconductor-motifstack/meta.yaml @@ -7,6 +7,7 @@ source: md5: 0391df16d61699fbe22fa38e809fc2cb build: number: 0 + skip: True # [osx] rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/r-ks/meta.yaml b/recipes/r-ks/meta.yaml index f606a90336..5e51b7fe74 100644 --- a/recipes/r-ks/meta.yaml +++ b/recipes/r-ks/meta.yaml @@ -27,7 +27,7 @@ requirements: - r-multicool - r-mvtnorm >=1.0_0 - r-rgl >=0.66 - - gcc +# - gcc - libglu # [linux] run: diff --git a/sorted-r-blacklist b/sorted-r-blacklist index a5a2a45c63..9ef16b8283 100644 --- a/sorted-r-blacklist +++ b/sorted-r-blacklist @@ -7,7 +7,7 @@ recipes/r-histonehmm # depends on bioconductor-motiv recipes/bioconductor-motifbreakr -recipes/bioconductor-motifstack +#recipes/bioconductor-motifstack # mgkit.DependencyError: The 'matplotlib' package is required # despite matplotlib being listed in the requirements From e8500feb0bbb8400b8bbf43bada94da22420b10c Mon Sep 17 00:00:00 2001 From: rvalieris Date: Fri, 23 Jun 2017 16:48:49 -0300 Subject: [PATCH 6/6] try bioconductor-motifbreakr --- recipes/bioconductor-motifbreakr/meta.yaml | 1 + recipes/bioconductor-motiv/meta.yaml | 2 +- recipes/r-ks/meta.yaml | 4 ++-- sorted-r-blacklist | 4 ---- 4 files changed, 4 insertions(+), 7 deletions(-) diff --git a/recipes/bioconductor-motifbreakr/meta.yaml b/recipes/bioconductor-motifbreakr/meta.yaml index 691d3e0bde..3632a30cc7 100644 --- a/recipes/bioconductor-motifbreakr/meta.yaml +++ b/recipes/bioconductor-motifbreakr/meta.yaml @@ -7,6 +7,7 @@ source: md5: 66d72ab927fb1da866a9376416fc2e79 build: number: 0 + skip: True # [osx] rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/bioconductor-motiv/meta.yaml b/recipes/bioconductor-motiv/meta.yaml index 145317a358..e74e357ca1 100644 --- a/recipes/bioconductor-motiv/meta.yaml +++ b/recipes/bioconductor-motiv/meta.yaml @@ -29,7 +29,7 @@ requirements: - gsl {{CONDA_GSL}}* - r-lattice - gcc # [linux] -# - llvm # [osx] + - llvm # [osx] run: - 'bioconductor-biocgenerics >=0.1.0' diff --git a/recipes/r-ks/meta.yaml b/recipes/r-ks/meta.yaml index 5e51b7fe74..07fbbdf05b 100644 --- a/recipes/r-ks/meta.yaml +++ b/recipes/r-ks/meta.yaml @@ -13,7 +13,7 @@ source: build: number: 0 -# skip: True # [osx] + skip: True # [osx] rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,7 @@ requirements: - r-multicool - r-mvtnorm >=1.0_0 - r-rgl >=0.66 -# - gcc + - gcc - libglu # [linux] run: diff --git a/sorted-r-blacklist b/sorted-r-blacklist index 9ef16b8283..8d79b2a3f2 100644 --- a/sorted-r-blacklist +++ b/sorted-r-blacklist @@ -5,10 +5,6 @@ recipes/cap-mirseq # conflicts with recent Rcpp version recipes/r-histonehmm -# depends on bioconductor-motiv -recipes/bioconductor-motifbreakr -#recipes/bioconductor-motifstack - # mgkit.DependencyError: The 'matplotlib' package is required # despite matplotlib being listed in the requirements recipes/mgkit