diff --git a/build.gradle b/build.gradle index 93f3cf651..3ace0bc3f 100644 --- a/build.gradle +++ b/build.gradle @@ -160,7 +160,7 @@ ext.commandClasses = ["picard.sam.AddCommentsToBam", "picard.sam.AddOrReplaceRea "picard.analysis.CollectWgsMetricsWithNonZeroCoverage", "picard.analysis.CompareMetrics", "picard.sam.CompareSAMs", "picard.analysis.artifacts.ConvertSequencingArtifactToOxoG", "picard.sam.CreateSequenceDictionary", "picard.sam.DownsampleSam", "picard.illumina.ExtractIlluminaBarcodes", "picard.sam.markduplicates.EstimateLibraryComplexity", "picard.sam.FastqToSam", "picard.util.FifoBuffer", - "picard.vcf.MendelianViolations.FindMendelianViolations", + "picard.vcf.MendelianViolations.FindMendelianViolations","picard.fingerprint.CrosscheckFingerprints", "picard.fingerprint.ClusterCrosscheckMetrics", "picard.fingerprint.CheckFingerprint", "picard.sam.FilterSamReads", "picard.vcf.filter.FilterVcf", "picard.sam.FixMateInformation", "picard.sam.GatherBamFiles", "picard.vcf.GatherVcfs", "picard.vcf.GenotypeConcordance", "picard.illumina.IlluminaBasecallsToFastq", "picard.illumina.IlluminaBasecallsToSam", "picard.illumina.CheckIlluminaDirectory", "picard.sam.CheckTerminatorBlock", "picard.util.IntervalListTools", "picard.util.LiftOverIntervalList", "picard.vcf.LiftoverVcf", "picard.vcf.MakeSitesOnlyVcf", diff --git a/src/main/java/picard/fingerprint/CheckFingerprint.java b/src/main/java/picard/fingerprint/CheckFingerprint.java index 2ca5fed61..03ec8ccb7 100644 --- a/src/main/java/picard/fingerprint/CheckFingerprint.java +++ b/src/main/java/picard/fingerprint/CheckFingerprint.java @@ -292,7 +292,7 @@ else if (!observedSampleAlias.equals(rec.getSample())) { return super.customCommandLineValidation(); } - private boolean isBamOrSamFile(final File f) { + static boolean isBamOrSamFile(final File f) { return (BamFileIoUtils.isBamFile(f) || f.getName().endsWith(IOUtil.SAM_FILE_EXTENSION)); } } diff --git a/src/main/java/picard/fingerprint/ClusterCrosscheckMetrics.java b/src/main/java/picard/fingerprint/ClusterCrosscheckMetrics.java new file mode 100644 index 000000000..5617185e0 --- /dev/null +++ b/src/main/java/picard/fingerprint/ClusterCrosscheckMetrics.java @@ -0,0 +1,135 @@ + +/* + * The MIT License + * + * Copyright (c) 2017 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. + */ + +package picard.fingerprint; + +import htsjdk.samtools.metrics.MetricsFile; +import htsjdk.samtools.util.IOUtil; +import picard.cmdline.CommandLineProgram; +import picard.cmdline.CommandLineProgramProperties; +import picard.cmdline.Option; +import picard.cmdline.StandardOptionDefinitions; +import picard.cmdline.programgroups.Fingerprinting; +import picard.util.GraphUtils; + +import java.io.File; +import java.io.FileNotFoundException; +import java.io.FileReader; +import java.util.List; +import java.util.Map; +import java.util.Set; +import java.util.stream.Collectors; + +/** + * Program to check that all (read-)groups within the set of input files appear to come from the same + * individual. Can be used to cross-check libraries, samples, or files. + * + * @author Yossi Farjoun + */ +@CommandLineProgramProperties( + usage = "Clusters the results from a CrosscheckFingerprints into groups that are connected according " + + "to a large enough LOD score.", + usageShort = "Clusters the results of a CrosscheckFingerprints run by LOD score.", + programGroup = Fingerprinting.class +) +public class ClusterCrosscheckMetrics extends CommandLineProgram { + + @Option(shortName = StandardOptionDefinitions.INPUT_SHORT_NAME, + doc = "The cross-check metrics file to be clustered") + public File INPUT; + + @Option(shortName = StandardOptionDefinitions.OUTPUT_SHORT_NAME, optional = true, + doc = "Optional output file to write metrics to. Default is to write to stdout.") + public File OUTPUT; + + @Option(shortName = "LOD", + doc = "LOD score to be used as the threshold for clustering.") + public double LOD_THRESHOLD = 0; + + @Override + protected int doWork() { + IOUtil.assertFileIsReadable(INPUT); + if(OUTPUT != null) IOUtil.assertFileIsWritable(OUTPUT); + + final MetricsFile metricsFile = getMetricsFile(); + + try { + metricsFile.read(new FileReader(INPUT)); + } catch (FileNotFoundException e) { + e.printStackTrace(); + return 1; + } + + clusterMetrics(metricsFile.getMetrics()).write(OUTPUT); + + return 0; + } + + private MetricsFile clusterMetrics(final List metrics) { + final GraphUtils.Graph graph = new GraphUtils.Graph<>(); + metrics.stream() + .filter(metric -> metric.LOD_SCORE > LOD_THRESHOLD) + .forEach(metric -> { + final String lhsBy = metric.LEFT_GROUP_VALUE; + final String rhsBy = metric.RIGHT_GROUP_VALUE; + + graph.addEdge(lhsBy, rhsBy); + }); + + final Map clusters = graph.cluster(); + + // invert map...get map from group integer to list of group_value + final Map> collection = clusters.entrySet().stream() + .collect(Collectors.groupingBy(Map.Entry::getValue)) + .entrySet() + .stream() + .collect(Collectors + .toMap(Map.Entry::getKey, entry -> entry.getValue() + .stream() + .map(Map.Entry::getKey) + .collect(Collectors.toSet()))); + + final MetricsFile clusteredMetrics = getMetricsFile(); + // for each cluster, find the metrics that compare groups that are both from the cluster + // and add them to the metrics file + for (final Map.Entry> cluster : collection.entrySet()) { + + clusteredMetrics.addAllMetrics( + metrics.stream() + .filter(metric -> + cluster.getValue().contains(metric.LEFT_GROUP_VALUE) && + cluster.getValue().contains(metric.RIGHT_GROUP_VALUE)) + .map(metric -> { + final ClusteredCrosscheckMetric clusteredCrosscheckMetric = new ClusteredCrosscheckMetric(metric); + clusteredCrosscheckMetric.CLUSTER = cluster.getKey(); + clusteredCrosscheckMetric.CLUSTER_SIZE = cluster.getValue().size(); + + return clusteredCrosscheckMetric; + }) + .collect(Collectors.toSet())); + } + return clusteredMetrics; + } +} diff --git a/src/main/java/picard/fingerprint/ClusteredCrosscheckMetric.java b/src/main/java/picard/fingerprint/ClusteredCrosscheckMetric.java new file mode 100644 index 000000000..b4e355902 --- /dev/null +++ b/src/main/java/picard/fingerprint/ClusteredCrosscheckMetric.java @@ -0,0 +1,52 @@ +/* + * The MIT License + * + * Copyright (c) 2015 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. + */ + +package picard.fingerprint; + +import picard.util.ReflectionUtil; + +/** + * A Metric class to hold the result of clustered crosschecking fingerprints. + * The same metric will be used for crosschecking Readgroups, libraries, samples, or files. + * + * @author Yossi Farjoun + */ + +public class ClusteredCrosscheckMetric extends CrosscheckMetric { + // Number indicating the cluster to which the groups within this metric belong. + // Metric-lines involving groups that are not in the same cluster should either + // be excluded, or given an error-indicating CLUSTER value (perhaps MIN_VALUE?). + public Integer CLUSTER; + + public Integer CLUSTER_SIZE; + + public ClusteredCrosscheckMetric() { + super(); + } + + public ClusteredCrosscheckMetric(CrosscheckMetric metric) { + super(); + ReflectionUtil.copyFromBaseClass(metric, this); + } +} diff --git a/src/main/java/picard/fingerprint/CrosscheckFingerprints.java b/src/main/java/picard/fingerprint/CrosscheckFingerprints.java new file mode 100644 index 000000000..adef082f7 --- /dev/null +++ b/src/main/java/picard/fingerprint/CrosscheckFingerprints.java @@ -0,0 +1,396 @@ + +/* + * The MIT License + * + * Copyright (c) 2010, 2016 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. + */ + +package picard.fingerprint; + +import htsjdk.samtools.BamFileIoUtils; +import htsjdk.samtools.metrics.MetricsFile; +import htsjdk.samtools.util.IOUtil; +import htsjdk.samtools.util.Log; +import picard.PicardException; +import picard.cmdline.CommandLineProgram; +import picard.cmdline.CommandLineProgramProperties; +import picard.cmdline.Option; +import picard.cmdline.StandardOptionDefinitions; +import picard.cmdline.programgroups.Fingerprinting; + +import java.io.*; +import java.text.NumberFormat; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Map; +import java.util.concurrent.TimeUnit; +import java.util.function.Function; +import java.util.stream.Collectors; + +import static java.util.stream.Collectors.toSet; +import static picard.fingerprint.CrosscheckMetric.FingerprintResult; +import static picard.fingerprint.CrosscheckMetric.FingerprintResult.*; + +/** + * Program to check that all fingerprints within the set of input files appear to come from the same + * individual. Can be used to cross-check readgroups, libraries, samples, or files. + * Operates on bams/sams and vcfs. + * + * @author Tim Fennell + * @author Yossi Farjoun + */ +@CommandLineProgramProperties( + usage = "Checks if all fingerprints within a set of files appear to come from the same individual." + + "The fingerprints are calculated initially at the readgroup level (if present) but can be" + + "\"rolled-up\" by library, sample or file, to increase power and provide results at the " + + "desired resolution. Regular output is in a \"Moltenized\" format, one row per comparison. " + + "In this format the output will include the LOD score and also tumor-aware LOD score which can " + + "help assess identity even in the presence of a severe LOH sample with high purity." + + "A matrix output is also availalble to facilitate visual inspection of crosscheck results." + + "\n" + + "A separate CLP, ClusterCrosscheckMetrics, can cluster the results as a connected graph" + + "according to LOD greater than a threshold. ", + usageShort = "Checks if all fingerprints appear to come from the same individual.", + programGroup = Fingerprinting.class +) +public class CrosscheckFingerprints extends CommandLineProgram { + + @Option(shortName = StandardOptionDefinitions.INPUT_SHORT_NAME, + doc = "One or more input files (or lists of files) to compare fingerprints for.") + public List INPUT; + + @Option(shortName = StandardOptionDefinitions.OUTPUT_SHORT_NAME, optional = true, + doc = "Optional output file to write metrics to. Default is to write to stdout.") + public File OUTPUT = null; + + @Option(shortName = "MO", optional = true, + doc = "Optional output file to write matrix of LOD scores to. This is less informative than the metrics output " + + "and only contains Normal-Normal LOD score (i.e. doesn't account for Loss of heterogeneity)." + + "It is however sometimes easier to use visually.") + public File MATRIX_OUTPUT = null; + + @Option(shortName = "H", doc = "The file lists a set of SNPs, optionally arranged in high-LD blocks, to be used for fingerprinting. See " + + "https://software.broadinstitute.org/gatk/documentation/article?id=9526 for details.") + public File HAPLOTYPE_MAP; + + @Option(shortName = "LOD", + doc = "If any two groups (with the same sample name) match with a LOD score lower than the threshold " + + "the program will exit with a non-zero code to indicate error." + + " Program will also exit with an error if it finds two groups with different sample name that " + + "match with a LOD score greater than -LOD_THRESHOLD." + + "\n\n" + + "LOD score 0 means equal likelihood" + + "that the groups match vs. come from different individuals, negative LOD scores mean N logs more likely " + + "that the groups are from different individuals, and positive numbers mean N logs more likely that" + + " the groups are from the sample individual. ") + public double LOD_THRESHOLD = 0; + + @Option(doc = "Specificies which data-type should be used as the basic comparison unit. Fingerprints from readgroups can " + + "be \"rolled-up\" to the LIBRARY, SAMPLE, or FILE level before being compared." + + " Fingerprints from VCF can be be compared by SAMPLE or FILE.") + public CrosscheckMetric.DataType CROSSCHECK_BY = CrosscheckMetric.DataType.READGROUP; + + @Option(doc = "The number of threads to use to process files and generate Fingerprints.") + public int NUM_THREADS = 1; + + @Option(doc = "Allow the use of duplicate reads in performing the comparison. Can be useful when duplicate " + + "marking has been overly aggressive and coverage is low.") + public boolean ALLOW_DUPLICATE_READS = false; + + @Option(doc = "Assumed genotyping error rate that provides a floor on the probability that a genotype comes from" + + " the expected sample.") + public double GENOTYPING_ERROR_RATE = 0.01; + + @Option(doc = "If true then only groups that do not relate to each other as expected will have their LODs reported.") + public boolean OUTPUT_ERRORS_ONLY = false; + + @Option(doc = "The rate at which a heterozygous genotype in a normal sample turns into a homozygous (via loss of heterozygosity) " + + "in the tumor (model assumes independent events, so this needs to be larger than reality).", optional = true) + public double LOSS_OF_HET_RATE = 0.5; + + @Option(doc = "Expect all groups' fingerprints to match, irrespective of their sample names. By default (with this value set to " + + "false), groups (readgroups, libraries, files, or samples) with different sample names are expected to mismatch, and those with the " + + "same sample name are expected to match. ") + public boolean EXPECT_ALL_GROUPS_TO_MATCH = false; + + @Option(doc = "When one or more mismatches between groups is detected, exit with this value instead of 0.") + public int EXIT_CODE_WHEN_MISMATCH = 1; + + private final Log log = Log.getInstance(CrosscheckFingerprints.class); + + private double[][] crosscheckMatrix = null; + private final List matrixKeys = new ArrayList<>(); + + @Override + protected int doWork() { + // Check inputs + INPUT.forEach(IOUtil::assertFileIsReadable); + IOUtil.assertFileIsReadable(HAPLOTYPE_MAP); + if (OUTPUT != null) IOUtil.assertFileIsWritable(OUTPUT); + if (MATRIX_OUTPUT != null) IOUtil.assertFileIsWritable(MATRIX_OUTPUT); + + final HaplotypeMap map = new HaplotypeMap(HAPLOTYPE_MAP); + final FingerprintChecker checker = new FingerprintChecker(map); + + checker.setAllowDuplicateReads(ALLOW_DUPLICATE_READS); + checker.setValidationStringency(VALIDATION_STRINGENCY); + + log.info("Done checking input files, moving onto fingerprinting files."); + + final List extensions = new ArrayList<>(); + + extensions.add(BamFileIoUtils.BAM_FILE_EXTENSION); + extensions.add(IOUtil.SAM_FILE_EXTENSION); + extensions.addAll(Arrays.asList(IOUtil.VCF_EXTENSIONS)); + + final List unrolledFiles = IOUtil.unrollFiles(INPUT, extensions.toArray(new String[extensions.size()])); + + final Map fpMap = checker.fingerprintFiles(unrolledFiles, NUM_THREADS, 1, TimeUnit.DAYS); + + log.info("Finished generating fingerprints from files, moving on to cross-checking."); + + final List metrics = new ArrayList<>(); + final int numUnexpected; + + numUnexpected = crossCheckGrouped(fpMap, metrics, getFingerprintIdDetailsStringFunction(CROSSCHECK_BY), CROSSCHECK_BY); + + final MetricsFile metricsFile = getMetricsFile(); + metricsFile.addAllMetrics(metrics); + if (OUTPUT != null) { + metricsFile.write(OUTPUT); + } else { + metricsFile.write(new OutputStreamWriter(System.out)); + } + + if (MATRIX_OUTPUT != null) { + writeMatrix(); + } + + if (numUnexpected > 0) { + log.warn("At least two read groups did not relate as expected."); + return EXIT_CODE_WHEN_MISMATCH; + } else { + log.info("All read groups related as expected."); + return 0; + } + } + + private void writeMatrix() { + + final NumberFormat format = NumberFormat.getInstance(); + format.setMaximumFractionDigits(4); + + try (final OutputStream stream = new FileOutputStream(MATRIX_OUTPUT); + final BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(stream))) { + + // write the type by which the roll-up happened in the top left corner of the matrix + writer.write(CROSSCHECK_BY.name()); + + // write the nams of the keys as the first row + for (int i = 0; i < crosscheckMatrix.length; i++) { + writer.write('\t' + matrixKeys.get(i)); + } + writer.newLine(); + + for (int i = 0; i < crosscheckMatrix.length; i++) { + // write the key in the first column + writer.write(matrixKeys.get(i)); + // and then write all the values + for (int j = 0; j < crosscheckMatrix.length; j++) { + writer.write('\t' + format.format(crosscheckMatrix[i][j])); + } + writer.newLine(); + } + } catch (IOException e) { + throw new RuntimeException(e); + } + } + + private static Function getFingerprintIdDetailsStringFunction(CrosscheckMetric.DataType CROSSCHECK_BY) { + final Function groupByTemp; + switch (CROSSCHECK_BY) { + case READGROUP: + groupByTemp = details -> details.platformUnit; + break; + case LIBRARY: + groupByTemp = details -> details.sample + "::" + details.library; + break; + case FILE: + groupByTemp = details -> details.file; + break; + case SAMPLE: + groupByTemp = details -> details.sample; + break; + default: + throw new PicardException("unpossible"); + } + + // if the groupBy string is null (e.g. a vcf file has no read group info) then the hashcode is + // used intending to be unique per object (ignoring possible collisions) + return key -> { + final String temp = groupByTemp.apply(key); + return temp == null ? Integer.toString(key.hashCode()) : temp; + }; + } + + /** + * Method that combines the fingerprint evidence across all the read groups for the same sample + * and then produces a matrix of LOD scores for comparing every sample with every other sample. + */ + private int crossCheckGrouped(final Map fingerprints, final List metrics, + final Function by, + CrosscheckMetric.DataType type) { + + // collect the various entries according to the grouping "by" + + final Map>> collection = + fingerprints.entrySet() + .stream() + .collect(Collectors.groupingBy(entry -> by.apply(entry.getKey()))); + + final Map fingerprintsByGroup = collection.entrySet().stream() + .collect(Collectors.toMap( + entry -> { + // merge the keys (unequal values are eliminated by merge). + + final FingerprintIdDetails finalId = new FingerprintIdDetails(); + entry.getValue().forEach(id -> finalId.merge(id.getKey())); + finalId.group = entry.getKey(); + return finalId; + + }, entry -> { + // merge the values by merging the fingerprints. + + final FingerprintIdDetails firstDetail = entry.getValue().get(0).getKey(); + //use the "by" function to determine the "info" part of the fingerprint + final Fingerprint sampleFp = new Fingerprint(firstDetail.sample, null, by.apply(firstDetail)); + entry.getValue().stream().map(Map.Entry::getValue).collect(toSet()).forEach(sampleFp::merge); + return sampleFp; + + })); + + if (MATRIX_OUTPUT != null) { + crosscheckMatrix = new double[fingerprintsByGroup.size()][]; + for (int i = 0; i < fingerprintsByGroup.size(); i++) { + crosscheckMatrix[i] = new double[fingerprintsByGroup.size()]; + } + } + return crossCheckFingerprints(fingerprintsByGroup, type, metrics, by); + } + + /** + * Method that pairwise checks every pair of read groups and reports a LOD score for the two read groups + * coming from the same sample. + */ + private int crossCheckFingerprints(final Map fingerprints, final CrosscheckMetric.DataType type, final List metrics, Function by) { + int unexpectedResults = 0; + + final List fingerprintIdDetails = new ArrayList<>(fingerprints.keySet()); + + for (int i = 0; i < fingerprintIdDetails.size(); i++) { + final FingerprintIdDetails lhsRg = fingerprintIdDetails.get(i); + matrixKeys.add(by.apply(lhsRg)); + + for (int j = i; j < fingerprintIdDetails.size(); j++) { + final FingerprintIdDetails rhsRg = fingerprintIdDetails.get(j); + final boolean expectedToMatch = EXPECT_ALL_GROUPS_TO_MATCH || lhsRg.sample.equals(rhsRg.sample); + + final MatchResults results = FingerprintChecker.calculateMatchResults(fingerprints.get(lhsRg), fingerprints.get(rhsRg), GENOTYPING_ERROR_RATE, LOSS_OF_HET_RATE); + + final CrosscheckMetric.FingerprintResult result = getMatchResults(expectedToMatch, results); + + if (!OUTPUT_ERRORS_ONLY || !result.isExpected()) { + metrics.add(getMatchDetails(result, results, lhsRg, rhsRg, type)); + } + if (result != INCONCLUSIVE && !result.isExpected()) unexpectedResults++; + if (crosscheckMatrix != null) { + crosscheckMatrix[i][j] = results.getLOD(); + crosscheckMatrix[j][i] = results.getLOD(); + } + } + } + + return unexpectedResults; + } + + /** + * Generates tab delimited string containing details about a possible match between fingerprints on two different SAMReadGroupRecords + * + * @param matchResult String describing the match type. + * @param results MatchResults object + * @param leftPuDetails left hand side FingerprintIdDetails + * @param rightPuDetails right hand side FingerprintIdDetails + * @return tab delimited string containing details about a possible match + */ + private CrosscheckMetric getMatchDetails(final FingerprintResult matchResult, + final MatchResults results, + final FingerprintIdDetails leftPuDetails, + final FingerprintIdDetails rightPuDetails, + final CrosscheckMetric.DataType type) { + final CrosscheckMetric metric = new CrosscheckMetric(); + + metric.LEFT_GROUP_VALUE = leftPuDetails.group; + metric.RIGHT_GROUP_VALUE = rightPuDetails.group; + + metric.RESULT = matchResult; + metric.LOD_SCORE = results.getLOD(); + metric.LOD_SCORE_TUMOR_NORMAL = results.getLodTN(); + metric.LOD_SCORE_NORMAL_TUMOR = results.getLodNT(); + metric.DATA_TYPE = type; + + metric.LEFT_RUN_BARCODE = leftPuDetails.runBarcode; + metric.LEFT_LANE = leftPuDetails.runLane; + metric.LEFT_MOLECULAR_BARCODE_SEQUENCE = leftPuDetails.molecularBarcode; + metric.LEFT_LIBRARY = leftPuDetails.library; + metric.LEFT_SAMPLE = leftPuDetails.sample; + metric.LEFT_FILE = leftPuDetails.file; + + metric.RIGHT_RUN_BARCODE = rightPuDetails.runBarcode; + metric.RIGHT_LANE = rightPuDetails.runLane; + metric.RIGHT_MOLECULAR_BARCODE_SEQUENCE = rightPuDetails.molecularBarcode; + metric.RIGHT_LIBRARY = rightPuDetails.library; + metric.RIGHT_SAMPLE = rightPuDetails.sample; + metric.RIGHT_FILE = rightPuDetails.file; + + return metric; + } + + private FingerprintResult getMatchResults(final boolean expectedToMatch, final MatchResults results) { + if (expectedToMatch) { + if (results.getLOD() < LOD_THRESHOLD) { + return UNEXPECTED_MISMATCH; + } else if (results.getLOD() > -LOD_THRESHOLD) { + return EXPECTED_MATCH; + } else { + return INCONCLUSIVE; + } + } else { + if (results.getLOD() > -LOD_THRESHOLD) { + return UNEXPECTED_MATCH; + } else if (results.getLOD() < LOD_THRESHOLD) { + return EXPECTED_MISMATCH; + } else { + return INCONCLUSIVE; + } + } + } +} diff --git a/src/main/java/picard/fingerprint/CrosscheckMetric.java b/src/main/java/picard/fingerprint/CrosscheckMetric.java new file mode 100644 index 000000000..8c9deffd0 --- /dev/null +++ b/src/main/java/picard/fingerprint/CrosscheckMetric.java @@ -0,0 +1,110 @@ +/* + * The MIT License + * + * Copyright (c) 2016 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. + */ + +package picard.fingerprint; + +import htsjdk.samtools.metrics.MetricBase; + +/** + * A class to hold the result of crosschecking fingerprints. + * The same metric will be used for crosschecking Readgroups, libraries, samples, or files. + * + * @author Yossi Farjoun + */ +public class CrosscheckMetric extends MetricBase { + + // An enum representing whether the result of the fingerprinting was expected and whether it was a match. + public enum FingerprintResult { + EXPECTED_MATCH(true, true), + EXPECTED_MISMATCH(true, false), + UNEXPECTED_MATCH(false, true), + UNEXPECTED_MISMATCH(false, false), + INCONCLUSIVE(null, null); + + final private Boolean isExpected; + final private Boolean isMatch; + + FingerprintResult(Boolean isExpected, Boolean isMatch) { + this.isExpected = isExpected; + this.isMatch = isMatch; + } + + public Boolean isExpected() { + return isExpected; + } + + public Boolean isMatch() { + return isMatch; + } + } + + public enum DataType { + FILE, + SAMPLE, + LIBRARY, + READGROUP + } + + public String LEFT_GROUP_VALUE; + public String RIGHT_GROUP_VALUE; + + // The overall result of the match + public FingerprintResult RESULT; + // The data type that was being compared + public DataType DATA_TYPE; + + // The resulting LOD score comparing LEFT and RIGHT data + public Double LOD_SCORE; + // The resulting LOD score comparing LEFT as tumor and RIGHT as normal + public Double LOD_SCORE_TUMOR_NORMAL; + // The resulting LOD score comparing LEFT as normal and RIGHT as tumor + public Double LOD_SCORE_NORMAL_TUMOR; + + + // The LEFT run barcode (PU field) expected to look like : D047KACXX110901.1.ACCAACTG + public String LEFT_RUN_BARCODE; + // The LEFT lane + public Integer LEFT_LANE; + // The LEFT molecular (sample) barcode + public String LEFT_MOLECULAR_BARCODE_SEQUENCE; + // The LEFT library identifier + public String LEFT_LIBRARY; + // The LEFT sample identifier + public String LEFT_SAMPLE; + // The LEFT file from which the fingerprint was obtained + public String LEFT_FILE; + + // The RIGHT run barcode (PU field) expected to look like : D047KACXX110901.1.ACCAACTG + public String RIGHT_RUN_BARCODE; + // The LEFT lane + public Integer RIGHT_LANE; + // The LEFT molecular (sample) barcode + public String RIGHT_MOLECULAR_BARCODE_SEQUENCE; + // The LEFT library identifier + public String RIGHT_LIBRARY; + // The LEFT sample identifier + public String RIGHT_SAMPLE; + // The LEFT file from which the fingerprint was obtained + public String RIGHT_FILE; +} diff --git a/src/main/java/picard/fingerprint/CrosscheckReadGroupFingerprints.java b/src/main/java/picard/fingerprint/CrosscheckReadGroupFingerprints.java index 62696fdfe..6255f5c82 100644 --- a/src/main/java/picard/fingerprint/CrosscheckReadGroupFingerprints.java +++ b/src/main/java/picard/fingerprint/CrosscheckReadGroupFingerprints.java @@ -25,21 +25,13 @@ package picard.fingerprint; -import htsjdk.samtools.BamFileIoUtils; import picard.cmdline.CommandLineProgramProperties; -import picard.cmdline.CommandLineProgram; import picard.cmdline.Option; -import picard.cmdline.StandardOptionDefinitions; -import htsjdk.samtools.util.IOUtil; -import htsjdk.samtools.util.FormatUtil; -import htsjdk.samtools.util.Log; -import htsjdk.samtools.SAMReadGroupRecord; import picard.cmdline.programgroups.Fingerprinting; import java.io.File; -import java.io.PrintStream; -import java.util.*; -import java.util.concurrent.TimeUnit; +import java.util.ArrayList; +import java.util.List; /** * Program to check that all read groups within the set of BAM files appear to come from the same @@ -48,266 +40,63 @@ * @author Tim Fennell */ @CommandLineProgramProperties( - usage = "Checks if all read groups within a set of BAM files appear to come from the same individual", - usageShort = "Checks if all read groups appear to come from the same individual", + usage = "DEPRECATED: USE CrosscheckFingerprints. Checks if all read groups within a set of BAM files appear to come from the same individual", + usageShort = "DEPRECATED: USE CrosscheckFingerprints. Checks if all read groups appear to come from the same individual.", programGroup = Fingerprinting.class ) -public class CrosscheckReadGroupFingerprints extends CommandLineProgram { - - @Option(shortName= StandardOptionDefinitions.INPUT_SHORT_NAME, - doc="One or more input BAM files (or lists of BAM files) to compare fingerprints for.") - public List INPUT; - - @Option(shortName=StandardOptionDefinitions.OUTPUT_SHORT_NAME, optional=true, - doc="Optional output file to write metrics to. Default is to write to stdout.") - public File OUTPUT; - - @Option(shortName="H", doc="The file lists a set of SNPs, optionally arranged in high-LD blocks, to be used for fingerprinting. See " + - "https://software.broadinstitute.org/gatk/documentation/article?id=9526 for details.") - public File HAPLOTYPE_MAP; +/** + @deprecated 6/6/2017 + Use {@link CrosscheckFingerprints} instead. + */ +@Deprecated +public class CrosscheckReadGroupFingerprints extends CrosscheckFingerprints { - @Option(shortName="LOD", - doc="If any two read groups match with a LOD score lower than the threshold the program will exit " + - "with a non-zero code to indicate error. 0 means equal probability the read groups match vs. " + - "come from different individuals, negative numbers mean N logs more likely that the read groups " + - "are from different individuals and positive numbers mean N logs more likely that the read groups " + - "are from the sample individual.") - public double LOD_THRESHOLD = 0; - @Option(doc="Instead of producing the normal comparison of read-groups, roll fingerprints up to the sample level " + + @Option(doc = "Instead of producing the normal comparison of read-groups, roll fingerprints up to the sample level " + "and print out a sample x sample matrix with LOD scores.") - public boolean CROSSCHECK_SAMPLES = false; + public boolean CROSSCHECK_SAMPLES = false; - @Option(doc="Instead of producing the normal comparison of read-groups, roll fingerprints up to the library level " + + @Option(doc = "Instead of producing the normal comparison of read-groups, roll fingerprints up to the library level " + "and print out a library x library matrix with LOD scores.") public boolean CROSSCHECK_LIBRARIES = false; - @Option(doc="The number of threads to use to process BAM files and generate Fingerprints.") - public int NUM_THREADS = 1; - - @Option(doc="Allow the use of duplicate reads in performing the comparison. Can be useful when duplicate " + - "marking has been overly aggressive and coverage is low.") - public boolean ALLOW_DUPLICATE_READS = false; - - @Option(doc="Assumed genotyping error rate that provides a floor on the probability that a genotype comes from" + - " the expected sample.") - public double GENOTYPING_ERROR_RATE = 0.01; - - @Option(doc="If true then only read groups that do not relate to each other as expected will have their LODs reported.") - public boolean OUTPUT_ERRORS_ONLY = false; - - @Option(doc ="The rate at which a het in a normal sample turns into a hom in the tumor.", optional = true) - public double LOSS_OF_HET_RATE = 0.5; - - @Option(doc="Expect all read groups' fingerprints to match, irrespective of their sample names. By default (with this value set to " + - "false), read groups with different sample names are expected to mismatch, and those with the same sample name are expected " + - "to match.") - public boolean EXPECT_ALL_READ_GROUPS_TO_MATCH = false; - - @Option(doc="When one or more mismatches between read groups are detected, exit with this value instead of 0.") - public int EXIT_CODE_WHEN_MISMATCH = 1; - - private final Log log = Log.getInstance(CrosscheckReadGroupFingerprints.class); - - private final FormatUtil formatUtil = new FormatUtil(); - - // These are public so that other programs can parse status from the crosscheck file - public static final String EXPECTED_MATCH = "EXPECTED MATCH"; - public static final String EXPECTED_MISMATCH = "EXPECTED MISMATCH"; - public static final String UNEXPECTED_MATCH = "UNEXPECTED MATCH"; - public static final String UNEXPECTED_MISMATCH = "UNEXPECTED MISMATCH"; - - /** Stock main method. */ - public static void main(final String[] args) { - new CrosscheckReadGroupFingerprints().instanceMainWithExit(args); - } - - @Override protected int doWork() { - // Check inputs - for (final File f : INPUT) IOUtil.assertFileIsReadable(f); - IOUtil.assertFileIsReadable(HAPLOTYPE_MAP); - if (OUTPUT != null) IOUtil.assertFileIsWritable(OUTPUT); - - final HaplotypeMap map = new HaplotypeMap(HAPLOTYPE_MAP); - final FingerprintChecker checker = new FingerprintChecker(map); - - checker.setAllowDuplicateReads(ALLOW_DUPLICATE_READS); - - log.info("Done checking input files, moving onto fingerprinting files."); - - List unrolledFiles = IOUtil.unrollFiles(INPUT, BamFileIoUtils.BAM_FILE_EXTENSION, IOUtil.SAM_FILE_EXTENSION); - final Map fpMap = checker.fingerprintSamFiles(unrolledFiles, NUM_THREADS, 1, TimeUnit.DAYS); - final List fingerprints = new ArrayList<>(fpMap.values()); + @Override + protected String[] customCommandLineValidation() { + final List errors = new ArrayList<>(); - log.info("Finished generating fingerprints from BAM files, moving on to cross-checking."); - - // Setup the output - final PrintStream out; - if (OUTPUT != null) { - out = new PrintStream(IOUtil.openFileForWriting(OUTPUT), true); - } - else { - out = System.out; + if (CROSSCHECK_BY != CrosscheckMetric.DataType.READGROUP) { + errors.add("When calling CrosscheckReadGroupFingerprints, please refrain from supplying a CROSSCHECK_BY argument. " + + "(Found value " + CROSSCHECK_BY + "\n" + + "Use CrosscheckFingerprints if you would like to do that."); } - if (this.CROSSCHECK_SAMPLES) { - crossCheckSamples(fingerprints, out); - return 0; - } - else if (this.CROSSCHECK_LIBRARIES) { - crossCheckLibraries(fpMap, out); - return 0; + if (MATRIX_OUTPUT != null) { + errors.add("When calling CrosscheckReadGroupFingerprints, please refrain from supplying a MATRIX_OUTPUT argument.\n" + + "(Found value " + MATRIX_OUTPUT + "\n" + + "Use CrosscheckFingerprints if you would like to do that."); } - else { - return crossCheckReadGroups(fpMap, out); - } - } - - /** - * Method that combines the fingerprint evidence across all the read groups for the same sample - * and then produces a matrix of LOD scores for comparing every sample with every other sample. - */ - private void crossCheckSamples(final List fingerprints, final PrintStream out) { - final SortedMap sampleFps = FingerprintChecker.mergeFingerprintsBySample(fingerprints); - final SortedSet samples = (SortedSet) sampleFps.keySet(); - - // Print header row - out.print("\t"); - for (final String sample : samples) { out.print(sample); out.print("\t"); } - out.println(); - // Print results rows - for (final String sample : samples) { - out.print(sample); - final Fingerprint fp = sampleFps.get(sample); - - for (final String otherSample : samples) { - final MatchResults results = FingerprintChecker.calculateMatchResults(fp, sampleFps.get(otherSample), GENOTYPING_ERROR_RATE, LOSS_OF_HET_RATE); - out.print("\t"); - out.print(formatUtil.format(results.getLOD())); - } - - out.println(); - } - } - - /** - * Method that combines the fingerprint evidence across all the read groups for the same library - * and then produces a matrix of LOD scores for comparing every library with every other library. - */ - private void crossCheckLibraries(final Map fingerprints, final PrintStream out) { - final List fixedFps = new ArrayList<>(); - for (final SAMReadGroupRecord rg : fingerprints.keySet()) { - final Fingerprint old = fingerprints.get(rg); - final String name = rg.getSample() + "::" + rg.getLibrary(); - final Fingerprint newFp = new Fingerprint(name, old.getSource(), old.getInfo()); - newFp.putAll(old); - - fixedFps.add(newFp); + if (!errors.isEmpty()) { + return errors.toArray(new String[errors.size()]); + } else { + return super.customCommandLineValidation(); } - - crossCheckSamples(fixedFps, out); - } - - /** - * Method that pairwise checks every pair of read groups and reports a LOD score for the two read groups - * coming from the same sample. - */ - private int crossCheckReadGroups(final Map fingerprints, final PrintStream out) { - int mismatches = 0; - int unexpectedMatches = 0; - - final List readGroupRecords = new ArrayList<>(fingerprints.keySet()); - final List output = new ArrayList<>(); - - for (int i = 0; i < readGroupRecords.size(); i++) { - final SAMReadGroupRecord lhsRg = readGroupRecords.get(i); - for (int j= i+1; j < readGroupRecords.size(); j++) { - final SAMReadGroupRecord rhsRg = readGroupRecords.get(j); - final boolean expectedToMatch = EXPECT_ALL_READ_GROUPS_TO_MATCH || lhsRg.getSample().equals(rhsRg.getSample()); - - final MatchResults results = FingerprintChecker.calculateMatchResults(fingerprints.get(lhsRg), fingerprints.get(rhsRg), GENOTYPING_ERROR_RATE, LOSS_OF_HET_RATE); - if (expectedToMatch) { - if (results.getLOD() < LOD_THRESHOLD) { - mismatches++; - output.add(getMatchDetails(UNEXPECTED_MISMATCH, results, lhsRg, rhsRg)); - } else { - if (!OUTPUT_ERRORS_ONLY) { - output.add(getMatchDetails(EXPECTED_MATCH, results, lhsRg, rhsRg)); - } - } - } else { - if (results.getLOD() > -LOD_THRESHOLD) { - unexpectedMatches++; - output.add(getMatchDetails(UNEXPECTED_MATCH, results, lhsRg, rhsRg)); - } else { - if (!OUTPUT_ERRORS_ONLY) { - output.add(getMatchDetails(EXPECTED_MISMATCH, results, lhsRg, rhsRg)); - } - } - } - } - } - - if (!output.isEmpty()) { - out.println("RESULT\tLOD_SCORE\tLOD_SCORE_TUMOR_NORMAL\tLOD_SCORE_NORMAL_TUMOR\tLEFT_RUN_BARCODE\tLEFT_LANE\tLEFT_MOLECULAR_BARCODE_SEQUENCE\tLEFT_LIBRARY\tLEFT_SAMPLE\t" + - "RIGHT_RUN_BARCODE\tRIGHT_LANE\tRIGHT_MOLECULAR_BARCODE_SEQUENCE\tRIGHT_LIBRARY\tRIGHT_SAMPLE"); - out.println(String.join("\n", output)); - } - - if (mismatches + unexpectedMatches > 0) { - log.info("WARNING: At least two read groups did not relate as expected."); - return EXIT_CODE_WHEN_MISMATCH; - } - else { - log.info("All read groups related as expected."); - return 0; - } - } - - /** - * Generates tab delimited string containing details about a possible match between fingerprints on two different SAMReadGroupRecords - * @param matchResult String describing the match type. - * @param results MatchResults object - * @param left left hand side SAMReadGroupRecord - * @param right right hand side SAMReadGroupRecord - * @return tab delimited string containing details about a possible match - */ - private String getMatchDetails(final String matchResult, final MatchResults results, final SAMReadGroupRecord left, final SAMReadGroupRecord right) { - final List elements = new ArrayList<>(4); - elements.add(matchResult); - elements.add(formatUtil.format(results.getLOD())); - elements.add(formatUtil.format(results.getLodTN())); - elements.add(formatUtil.format(results.getLodNT())); - elements.add(getReadGroupDetails(left)); - elements.add(getReadGroupDetails(right)); - return String.join("\t", elements); } - /** - * Generates tab delimited string containing details about the passed SAMReadGroupRecord - * @param readGroupRecord record - * @return tab delimited string containing details about the SAMReadGroupRecord - */ - private String getReadGroupDetails(final SAMReadGroupRecord readGroupRecord) { - final List elements = new ArrayList<>(5); + @Override + protected int doWork() { - final String[] tmp = readGroupRecord.getPlatformUnit().split("\\."); // Expect to look like: D047KACXX110901.1.ACCAACTG - String runBarcode = "?"; - String lane = "?"; - String molBarcode = "?"; - if ((tmp.length == 3) || (tmp.length == 2)) { - runBarcode = tmp[0]; - lane = tmp[1]; - molBarcode = (tmp.length == 3) ? tmp[2] : ""; // In older BAMS there may be no molecular barcode sequence + if (CROSSCHECK_LIBRARIES) { + CROSSCHECK_BY = CrosscheckMetric.DataType.LIBRARY; + } else if (CROSSCHECK_SAMPLES) { + CROSSCHECK_BY = CrosscheckMetric.DataType.SAMPLE; } else { - log.error("Unexpected format " + readGroupRecord.getPlatformUnit() + " for PU attribute"); + CROSSCHECK_BY = CrosscheckMetric.DataType.READGROUP; + MATRIX_OUTPUT = OUTPUT; + OUTPUT = new File("/dev/null"); } - elements.add(runBarcode); - elements.add(lane); - elements.add(molBarcode); - elements.add(readGroupRecord.getLibrary()); - elements.add(readGroupRecord.getSample()); - return String.join("\t", elements); + + return super.doWork(); } } + \ No newline at end of file diff --git a/src/main/java/picard/fingerprint/FingerprintChecker.java b/src/main/java/picard/fingerprint/FingerprintChecker.java index a7a0856df..c6efbaafd 100644 --- a/src/main/java/picard/fingerprint/FingerprintChecker.java +++ b/src/main/java/picard/fingerprint/FingerprintChecker.java @@ -24,13 +24,11 @@ package picard.fingerprint; -import htsjdk.samtools.SAMFileHeader; -import htsjdk.samtools.SamReader; -import htsjdk.samtools.SamReaderFactory; +import com.google.common.util.concurrent.ThreadFactoryBuilder; +import htsjdk.samtools.*; import htsjdk.samtools.filter.NotPrimaryAlignmentFilter; import htsjdk.samtools.filter.SamRecordFilter; import htsjdk.samtools.util.*; -import htsjdk.samtools.SAMReadGroupRecord; import htsjdk.variant.variantcontext.Allele; import htsjdk.variant.variantcontext.Genotype; import htsjdk.variant.variantcontext.GenotypeLikelihoods; @@ -42,6 +40,9 @@ import java.util.*; import java.util.concurrent.*; import java.util.concurrent.atomic.AtomicInteger; +import java.util.stream.Collectors; + +import static htsjdk.samtools.SamReaderFactory.Option.CACHE_FILE_BASED_INDEXES; /** * Major class that coordinates the activities involved in comparing genetic fingerprint @@ -61,6 +62,16 @@ private double genotypingErrorRate = DEFAULT_GENOTYPING_ERROR_RATE; private int maximalPLDifference = DEFAULT_MAXIMAL_PL_DIFFERENCE; + public ValidationStringency getValidationStringency() { + return validationStringency; + } + + public void setValidationStringency(ValidationStringency validationStringency) { + this.validationStringency = validationStringency; + } + + private ValidationStringency validationStringency = ValidationStringency.DEFAULT_STRINGENCY; + private boolean allowDuplicateReads = false; private double pLossofHet = 0; @@ -98,7 +109,7 @@ public void setmaximalPLDifference(final int maximalPLDifference) { this.maximalPLDifference = maximalPLDifference; } - public SAMFileHeader getHeader(){ + public SAMFileHeader getHeader() { return haplotypes.getHeader(); } /** @@ -127,101 +138,189 @@ public void setpLossofHet(final double pLossofHet) { */ public Map loadFingerprints(final File fingerprintFile, final String specificSample) { final VCFFileReader reader = new VCFFileReader(fingerprintFile, false); - final CloseableIterator iterator = reader.iterator(); SequenceUtil.assertSequenceDictionariesEqual(this.haplotypes.getHeader().getSequenceDictionary(), - reader.getSequenceDictionary(fingerprintFile)); + VCFFileReader.getSequenceDictionary(fingerprintFile)); + + if (isQueryable(this.getHeader().getSequenceDictionary(), reader)) { + reader.close(); + return loadFingerprintsFromIndexedVcf(fingerprintFile, specificSample); + } else { + reader.close(); + return loadFingerprintsFromNonIndexedVcf(fingerprintFile, specificSample); + } + } + + /** + * Loads genotypes from the supplied file into one or more Fingerprint objects and returns them in a + * Map of Sample->Fingerprint. + * + * @param fingerprintFile - VCF file containing genotypes for one or more samples + * @param specificSample - null to load genotypes for all samples contained in the file or the name + * of an individual sample to load (and exclude all others). + * @return a Map of Sample name to Fingerprint + */ + public Map loadFingerprintsFromNonIndexedVcf(final File fingerprintFile, final String specificSample) { + final VCFFileReader reader = new VCFFileReader(fingerprintFile, false); final Map fingerprints = new HashMap<>(); Set samples = null; - if (specificSample != null) { - samples = new HashSet<>(); - samples.add(specificSample); - } - while (iterator.hasNext()) { + for (final VariantContext ctx : reader) { // Setup the sample names set if needed - final VariantContext ctx = iterator.next(); - if (samples == null) samples = ctx.getSampleNames(); - - if (isUsableSnp(ctx)) { - final HaplotypeBlock h = this.haplotypes.getHaplotype(ctx.getContig(), ctx.getStart()); - final Snp snp = this.haplotypes.getSnp(ctx.getContig(), ctx.getStart()); - if (h == null) continue; - - // Check the alleles from the file against the expected set of genotypes - { - boolean allelesOk = true; - for (final Allele allele : ctx.getAlleles()) { - final byte[] bases = allele.getBases(); - if (bases.length > 1 || (bases[0] != snp.getAllele1() && bases[0] != snp.getAllele2())) { - allelesOk = false; - } - } - if (!allelesOk) { - log.warn("Problem with genotype file '" + fingerprintFile.getName() + "': Alleles " - + ctx.getAlleles() + " do not match to alleles for SNP " + snp - + " with alleles " + snp.getAlleleString()); - continue ; + + if (samples == null) { + if (specificSample != null) { + samples = new HashSet<>(); + samples.add(specificSample); + } else { + samples = ctx.getSampleNames(); + if (samples == null) { + log.warn("No samples found in file " + fingerprintFile + ". Skipping file."); + return Collections.emptyMap(); } } - for (final String sample : samples) { - Fingerprint fp = fingerprints.get(sample); - // Find or construct the fingerprint for this sample - if (fp == null) { - fp = new Fingerprint(sample, fingerprintFile, null); - fingerprints.put(sample, fp); - } + samples.forEach(s -> fingerprints.put(s, new Fingerprint(s, fingerprintFile, null))); + } + try { + getFingerprintFromVc(fingerprints, ctx); + } catch (IllegalArgumentException e) { + log.warn("There was a genotyping error in File: " + fingerprintFile + "\n" + e.getMessage()); + } + } - //PLs are preferred over GTs - //TODO: this code is replicated in various places (ReconstructTriosFromVCF for example). Needs refactoring. - //TODO: add a way to force using GTs when both are available (why?) + return fingerprints; + } - // Get the genotype for the sample and check that it is useful - final Genotype genotype = ctx.getGenotype(sample); - if (genotype == null) { - throw new IllegalArgumentException("Cannot find sample " + sample + " in provided file: " + fingerprintFile); - } - if (genotype.hasPL()) { - - final HaplotypeProbabilitiesFromGenotypeLikelihoods hFp = new HaplotypeProbabilitiesFromGenotypeLikelihoods(h); - //do not modify the PL array directly fragile!!!!! - final int[] pls = genotype.getPL(); - final int[] newPLs = new int[pls.length]; - for (int i = 0; i < pls.length; i++) { - newPLs[i] = Math.min(maximalPLDifference, pls[i]); - } - hFp.addToLogLikelihoods(snp, ctx.getAlleles(), GenotypeLikelihoods.fromPLs(newPLs).getAsVector()); - fp.add(hFp); - } else { + /** + * Loads genotypes from the supplied file into one or more Fingerprint objects and returns them in a + * Map of Sample->Fingerprint. + * + * @param fingerprintFile - VCF file containing genotypes for one or more samples + * @param specificSample - null to load genotypes for all samples contained in the file or the name + * of an individual sample to load (and exclude all others). + * @return a Map of Sample name to Fingerprint + */ + public Map loadFingerprintsFromIndexedVcf(final File fingerprintFile, final String specificSample) { + final VCFFileReader reader = new VCFFileReader(fingerprintFile, true); - if (genotype.isNoCall()) continue; + SequenceUtil.assertSequenceDictionariesEqual(this.haplotypes.getHeader().getSequenceDictionary(), + VCFFileReader.getSequenceDictionary(fingerprintFile)); - // TODO: when multiple genotypes are available for a Haplotype check that they - // TODO: agree. Not urgent since DownloadGenotypes already does this. - if (fp.containsKey(h)) continue; + SortedSet snps = new TreeSet<>(haplotypes.getAllSnps()); - final boolean hom = genotype.isHom(); - final byte allele = StringUtil.toUpperCase(genotype.getAllele(0).getBases()[0]); + final Map fingerprints = new HashMap<>(); + Set samples = null; - final double halfError = this.genotypingErrorRate / 2; - final double accuracy = 1 - this.genotypingErrorRate; - final double[] probs = new double[]{ - (hom && allele == snp.getAllele1()) ? accuracy : halfError, - (!hom) ? accuracy : halfError, - (hom && allele == snp.getAllele2()) ? accuracy : halfError - }; + for (final Snp snp : snps) { + final VariantContext ctx = reader.query(snp.getChrom(), snp.getPos(), snp.getPos()).next(); + if (ctx == null) continue; - fp.add(new HaplotypeProbabilitiesFromGenotype(snp, h, probs[0], probs[1], probs[2])); + if (samples == null) { + if (specificSample != null) { + samples = new HashSet<>(); + samples.add(specificSample); + } else { + samples = ctx.getSampleNames(); + if (samples == null) { + log.warn("No samples found in file " + fingerprintFile + ". Skipping file."); + return Collections.emptyMap(); } } + + samples.forEach(s -> fingerprints.put(s, new Fingerprint(s, fingerprintFile, null))); + } + try { + getFingerprintFromVc(fingerprints, ctx); + } catch (IllegalArgumentException e) { + log.warn("There was a genotyping error in File: " + fingerprintFile + "\n" + e.getMessage()); } } return fingerprints; } + + /** + * Adds the fingerprints found in the variant Context to the map. + * @param fingerprints a map from Sample to fingerprint + * @param ctx the VC from which to extract (part of ) a fingerprint + */ + private void getFingerprintFromVc(Map fingerprints, VariantContext ctx) throws IllegalArgumentException { + if (!isUsableSnp(ctx)) { + return; + } + + final HaplotypeBlock h = this.haplotypes.getHaplotype(ctx.getContig(), ctx.getStart()); + final Snp snp = this.haplotypes.getSnp(ctx.getContig(), ctx.getStart()); + if (h == null) return; + + // Check the alleles from the file against the expected set of genotypes + { + boolean allelesOk = true; + for (final Allele allele : ctx.getAlleles()) { + final byte[] bases = allele.getBases(); + if (bases.length > 1 || (bases[0] != snp.getAllele1() && bases[0] != snp.getAllele2())) { + allelesOk = false; + } + } + if (!allelesOk) { + + log.warn("Problem with genotype file: Alleles " + + ctx.getAlleles() + " do not match to alleles for SNP " + snp + + " with alleles " + snp.getAlleleString()); + throw new IllegalArgumentException("Alleles do not match between database and file"); + } + } + + for (final String sample : fingerprints.keySet()) { + final Fingerprint fp = fingerprints.get(sample); + + //PLs are preferred over GTs + //TODO: this code is replicated in various places (ReconstructTriosFromVCF for example). Needs refactoring. + //TODO: add a way to force using GTs when both are available (why?) + + // Get the genotype for the sample and check that it is useful + final Genotype genotype = ctx.getGenotype(sample); + if (genotype == null) { + throw new IllegalArgumentException("Cannot find sample " + sample + " in provided file. "); + } + if (genotype.hasPL()) { + + final HaplotypeProbabilitiesFromGenotypeLikelihoods hFp = new HaplotypeProbabilitiesFromGenotypeLikelihoods(h); + //do not modify the PL array directly fragile!!!!! + final int[] pls = genotype.getPL(); + final int[] newPLs = new int[pls.length]; + for (int i = 0; i < pls.length; i++) { + newPLs[i] = Math.min(maximalPLDifference, pls[i]); + } + hFp.addToLogLikelihoods(snp, ctx.getAlleles(), GenotypeLikelihoods.fromPLs(newPLs).getAsVector()); + fp.add(hFp); + } else { + + if (genotype.isNoCall()) continue; + + // TODO: when multiple genotypes are available for a Haplotype check that they + // TODO: agree. Not urgent since DownloadGenotypes already does this. + if (fp.containsKey(h)) continue; + + final boolean hom = genotype.isHom(); + final byte allele = StringUtil.toUpperCase(genotype.getAllele(0).getBases()[0]); + + final double halfError = this.genotypingErrorRate / 2; + final double accuracy = 1 - this.genotypingErrorRate; + final double[] probs = new double[]{ + (hom && allele == snp.getAllele1()) ? accuracy : halfError, + (!hom) ? accuracy : halfError, + (hom && allele == snp.getAllele2()) ? accuracy : halfError + }; + + fp.add(new HaplotypeProbabilitiesFromGenotype(snp, h, probs[0], probs[1], probs[2])); + } + } + } + /** * Quick method to check and see if the variant context represents a usable SNP variant. Unfortunately * ctx.isSnp doesn't always work if the genotype(s) are all monomorphic and the alternate allele isn't @@ -240,7 +339,6 @@ public static boolean isUsableSnp(final VariantContext ctx) { return true; } - /** * Takes a set of fingerprints and returns an IntervalList containing all the loci that * can be productively examined in sequencing data to compare to one or more of the @@ -261,11 +359,26 @@ public IntervalList getLociToGenotype(final Collection fingerprints return intervals.uniqued(); } + public Map fingerprintVcf(final File vcfFile) { + Map fpIdMap = new HashMap<>(); + + final Map< String, Fingerprint> sampleFpMap = loadFingerprints(vcfFile, null); + + sampleFpMap.forEach((key, value) -> { + FingerprintIdDetails fpId = new FingerprintIdDetails(); + fpId.sample = key; + fpId.file = vcfFile.getAbsolutePath(); + + fpIdMap.put(fpId, value); + }); + return fpIdMap; + } + /** * Generates a Fingerprint per read group in the supplied SAM file using the loci provided in * the interval list. */ - public Map fingerprintSamFile(final File samFile, final IntervalList loci) { + public Map fingerprintSamFile(final File samFile, final IntervalList loci) { final SamReader in = SamReaderFactory.makeDefault() .enable(SamReaderFactory.Option.CACHE_FILE_BASED_INDEXES) .open(samFile); @@ -287,13 +400,17 @@ public IntervalList getLociToGenotype(final Collection fingerprints iterator.setSamFilters(filters); } - final Map fingerprintsByReadGroup = new HashMap<>(); - final List rgs = in.getFileHeader().getReadGroups(); + final Map fingerprintsByReadGroup = new HashMap<>(); + final Collection rgs = in.getFileHeader().getReadGroups().stream().map(rg-> + {FingerprintIdDetails id = new FingerprintIdDetails(rg.getPlatformUnit(), samFile.getAbsolutePath()); + id.library = rg.getLibrary(); + id.sample = rg.getSample(); + return id;}).collect(Collectors.toSet()); - for (final SAMReadGroupRecord rg : rgs) { - final Fingerprint fingerprint = new Fingerprint(rg.getSample(), + for (final FingerprintIdDetails rg : rgs) { + final Fingerprint fingerprint = new Fingerprint(rg.sample, samFile, - rg.getPlatformUnit() != null ? rg.getPlatformUnit() : rg.getId()); + rg.platformUnit); fingerprintsByReadGroup.put(rg, fingerprint); for (final HaplotypeBlock h : this.haplotypes.getHaplotypes()) { @@ -304,10 +421,11 @@ public IntervalList getLociToGenotype(final Collection fingerprints // Set of read/template names from which we have already sampled a base and a qual. Since we assume // that all evidence for a haplotype is independent we can't sample two or more bases from a single // read or read-pair because they would not be independent! - final Set usedReadNames = new HashSet(10000); + final Set usedReadNames = new HashSet<>(10000); // Now go through the data at each locus and figure stuff out! for (final SamLocusIterator.LocusInfo info : iterator) { + boolean loggedMissingRGTag=false; // TODO: Filter out the locus if the allele balance doesn't make sense for either a // TODO: 50/50 het or a hom with some errors; in HS data with deep coverage any base // TODO: with major strand bias could cause errors @@ -318,15 +436,47 @@ public IntervalList getLociToGenotype(final Collection fingerprints for (final SamLocusIterator.RecordAndOffset rec : info.getRecordAndOffsets()) { final SAMReadGroupRecord rg = rec.getRecord().getReadGroup(); - if (rg == null || !fingerprintsByReadGroup.containsKey(rg)) { - final PicardException e = new PicardException("Unknown read group: " + rg); + final FingerprintIdDetails details; + if (rg == null) { + final PicardException e = new PicardException("Found read with no readgroup: " + rec.getRecord().getReadName() + " in file: " + samFile); + if (validationStringency != ValidationStringency.STRICT) { + final SAMReadGroupRecord readGroupRecord = new SAMReadGroupRecord(":::" + samFile.getAbsolutePath()); + readGroupRecord.setLibrary(""); + readGroupRecord.setSample(""); + readGroupRecord.setPlatformUnit(".0.ZZZ"); + + details = new FingerprintIdDetails(readGroupRecord, samFile.getAbsolutePath()); + if (!fingerprintsByReadGroup.containsKey(details)) { + Fingerprint fp = new Fingerprint(readGroupRecord.getSample(), samFile, readGroupRecord.getPlatformUnit()); + fingerprintsByReadGroup.put(details, fp); + + for (final HaplotypeBlock h : this.haplotypes.getHaplotypes()) { + fp.add(new HaplotypeProbabilitiesFromSequence(h)); + } + } + } else { + log.error(e); + throw e; + } + + if (validationStringency == ValidationStringency.LENIENT && !loggedMissingRGTag) { + log.warn(e); + log.warn("further messages from this file will be suppressed"); + loggedMissingRGTag = true; + } + + } else { // rg is not null + details = new FingerprintIdDetails(rg, samFile.getAbsolutePath()); + } + if (!fingerprintsByReadGroup.containsKey(details)) { + + final PicardException e = new PicardException("Unknown read group: " + rg + " in file: " + samFile); log.error(e); throw e; - } - else { + } else { final String readName = rec.getRecord().getReadName(); if (!usedReadNames.contains(readName)) { - final HaplotypeProbabilitiesFromSequence probs = (HaplotypeProbabilitiesFromSequence) fingerprintsByReadGroup.get(rg).get(haplotypeBlock); + final HaplotypeProbabilitiesFromSequence probs = (HaplotypeProbabilitiesFromSequence) fingerprintsByReadGroup.get(details).get(haplotypeBlock); final byte base = StringUtil.toUpperCase(rec.getReadBase()); final byte qual = rec.getBaseQuality(); @@ -345,7 +495,7 @@ public IntervalList getLociToGenotype(final Collection fingerprints * Data is aggregated by sample, not read-group. */ public Map identifyContaminant(final File samFile, final double contamination, final int locusMaxReads) { - final SamReader in = SamReaderFactory.makeDefault().enable(SamReaderFactory.Option.CACHE_FILE_BASED_INDEXES).open(samFile); + final SamReader in = SamReaderFactory.makeDefault().enable(CACHE_FILE_BASED_INDEXES).open(samFile); SequenceUtil.assertSequenceDictionariesEqual(this.haplotypes.getHeader().getSequenceDictionary(), in.getFileHeader().getSequenceDictionary()); @@ -390,7 +540,7 @@ public IntervalList getLociToGenotype(final Collection fingerprints final Snp snp = this.haplotypes.getSnp(info.getSequenceName(), info.getPosition()); // randomly select locusMaxReads elements from the list - final List recordAndOffsetList = randomSublist(info.getRecordAndOffsets(), locusMaxReads); + final List recordAndOffsetList = randomSublist(info.getRecordAndPositions(), locusMaxReads); for (final SamLocusIterator.RecordAndOffset rec : recordAndOffsetList) { final SAMReadGroupRecord rg = rec.getRecord().getReadGroup(); @@ -443,33 +593,53 @@ public IntervalList getLociToGenotype(final Collection fingerprints return shortList; } - /** - * Fingerprints one or more SAM/BAM files at all available loci within the haplotype map, using multiple threads - * to speed up the processing. - */ - public Map fingerprintSamFiles(final Collection files, final int threads, + /** + * Fingerprints one or more SAM/BAM/VCF files at all available loci within the haplotype map, using multiple threads + * to speed up the processing. + */ + public Map fingerprintFiles(final Collection files, final int threads, final int waitTime, final TimeUnit waitTimeUnit) { - // Generate fingerprints from each BAM file first + // Generate fingerprints from each file final AtomicInteger filesRead = new AtomicInteger(0); - final ExecutorService executor = Executors.newFixedThreadPool(threads); + final ExecutorService executor = Executors.newFixedThreadPool(threads, new ThreadFactoryBuilder().setDaemon(true).build()); final IntervalList intervals = this.haplotypes.getIntervalList(); - final Map retval = new ConcurrentHashMap<>(); + final Map retval = new ConcurrentHashMap<>(); + + final Map, File> futures = new HashMap<>(files.size()); for (final File f : files) { - executor.submit(() -> { - retval.putAll(fingerprintSamFile(f, intervals)); + futures.put(executor.submit(() -> { + try { + if (CheckFingerprint.isBamOrSamFile(f)) { + retval.putAll(fingerprintSamFile(f, intervals)); + } else { + retval.putAll(fingerprintVcf(f)); + } - if (filesRead.incrementAndGet() % 100 == 0) { - log.info("Processed " + filesRead.get() + " out of " + files.size()); + if (filesRead.incrementAndGet() % 100 == 0) { + log.info("Processed " + filesRead.get() + " out of " + files.size()); + } + } catch(Exception e){ + log.warn("Exception thrown in thread:" + e.getMessage()); + throw e; } - }); + }), f); } executor.shutdown(); try { executor.awaitTermination(waitTime, waitTimeUnit); } catch (final InterruptedException ie) { log.warn(ie, "Interrupted while waiting for executor to terminate."); } + for (final Map.Entry, File> futureFileEntry : futures.entrySet()) { + try { + futureFileEntry.getKey().get(); + } catch (InterruptedException | ExecutionException e) { + log.error("Failed to fingerprint on file: " + futureFileEntry.getValue()); + throw new RuntimeException(e); + } + } + return retval; } @@ -521,7 +691,7 @@ public IntervalList getLociToGenotype(final Collection fingerprints // Fingerprint the SAM files and calculate the results for (final File f : samFiles) { - final Map fingerprintsByReadGroup = fingerprintSamFile(f, intervals); + final Map fingerprintsByReadGroup = fingerprintSamFile(f, intervals); if (ignoreReadGroups) { final Fingerprint combinedFp = new Fingerprint(specificSample, f, null); @@ -536,8 +706,8 @@ public IntervalList getLociToGenotype(final Collection fingerprints resultsList.add(results); } else { - for (final SAMReadGroupRecord rg : fingerprintsByReadGroup.keySet()) { - final FingerprintResults results = new FingerprintResults(f, rg.getPlatformUnit(), specificSample); + for (final FingerprintIdDetails rg : fingerprintsByReadGroup.keySet()) { + final FingerprintResults results = new FingerprintResults(f, rg.platformUnit, rg.sample); for (final Fingerprint expectedFp : expectedFingerprints) { final MatchResults result = calculateMatchResults(fingerprintsByReadGroup.get(rg), expectedFp, 0, pLossofHet); results.addResults(result); @@ -678,4 +848,14 @@ public static MatchResults calculateMatchResults(final Fingerprint observedFp, f public static MatchResults calculateMatchResults(final Fingerprint observedFp, final Fingerprint expectedFp) { return calculateMatchResults(observedFp, expectedFp, 0, 0); } + + private static boolean isQueryable(SAMSequenceDictionary dict, VCFFileReader reader){ + + try { + reader.query(dict.getSequence(0).getSequenceName(),0,0); + } catch (RuntimeException e) { + return false; + } + return true; + } } diff --git a/src/main/java/picard/fingerprint/FingerprintIdDetails.java b/src/main/java/picard/fingerprint/FingerprintIdDetails.java new file mode 100644 index 000000000..1d105236a --- /dev/null +++ b/src/main/java/picard/fingerprint/FingerprintIdDetails.java @@ -0,0 +1,135 @@ +/* + * The MIT License + * + * Copyright (c) 2016 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. + */ + +package picard.fingerprint; + +import htsjdk.samtools.SAMReadGroupRecord; + +/** + * class to hold the details of a element of fingerprinting PU tag + * + * @author Yossi Farjoun + */ + +public class FingerprintIdDetails { + String platformUnit; + String runBarcode; + Integer runLane; + String molecularBarcode; + String library; + String file; + String sample; + + String group;// not used for equals or hash since it's expected to be made up of one of the other fields.. + + static final String multipleValuesString = ""; + + public FingerprintIdDetails() {} + + public FingerprintIdDetails(String platformUnit, String file) { + getPlatformUnitDetails(platformUnit); + this.platformUnit = platformUnit; + this.file = file; + } + + public FingerprintIdDetails(final SAMReadGroupRecord rg, String file) { + this(rg.getPlatformUnit(), file); + this.sample = rg.getSample(); + this.library = rg.getLibrary(); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + FingerprintIdDetails that = (FingerprintIdDetails) o; + + if (platformUnit != null ? !platformUnit.equals(that.platformUnit) : that.platformUnit != null) return false; + if (runBarcode != null ? !runBarcode.equals(that.runBarcode) : that.runBarcode != null) return false; + if (runLane != null ? !runLane.equals(that.runLane) : that.runLane != null) return false; + if (molecularBarcode != null ? !molecularBarcode.equals(that.molecularBarcode) : that.molecularBarcode != null) + return false; + if (library != null ? !library.equals(that.library) : that.library != null) return false; + if (file != null ? !file.equals(that.file) : that.file != null) return false; + + return sample != null ? sample.equals(that.sample) : that.sample == null; + } + + @Override + public int hashCode() { + int result = platformUnit != null ? platformUnit.hashCode() : 0; + result = 31 * result + (runBarcode != null ? runBarcode.hashCode() : 0); + result = 31 * result + (runLane != null ? runLane.hashCode() : 0); + result = 31 * result + (molecularBarcode != null ? molecularBarcode.hashCode() : 0); + result = 31 * result + (library != null ? library.hashCode() : 0); + result = 31 * result + (file != null ? file.hashCode() : 0); + result = 31 * result + (sample != null ? sample.hashCode() : 0); + return result; + } + + public FingerprintIdDetails merge(FingerprintIdDetails other) { + + platformUnit = equalValueOrElse(platformUnit, other.platformUnit, multipleValuesString); + runBarcode = equalValueOrElse(runBarcode, other.runBarcode, multipleValuesString); + runLane = equalValueOrElse(runLane, other.runLane, Integer.MIN_VALUE); + library = equalValueOrElse(library, other.library, multipleValuesString); + file = equalValueOrElse(file, other.file, multipleValuesString); + sample = equalValueOrElse(sample, other.sample, multipleValuesString); + molecularBarcode = equalValueOrElse(molecularBarcode, other.molecularBarcode, multipleValuesString); + + return this; + } + + static private T equalValueOrElse(T lhs, T rhs, T orElse) { + if (rhs == null) return lhs; + if (lhs == null) return rhs; + + return lhs.equals(rhs) ? lhs : orElse; + } + + /** + * Fills the relevant fields from the platformUnit string. + * + * @param puString platform Unit tag (from @RG) under consideration + */ + private void getPlatformUnitDetails(final String puString) { + + final String[] tmp = puString.split("\\."); // Expect to look like: D047KACXX110901.1.ACCAACTG + this.runBarcode = "?"; + this.runLane = -1; + this.molecularBarcode = "?"; + try { + if ((tmp.length == 3) || (tmp.length == 2)) { + this.runBarcode = tmp[0]; + this.runLane = Integer.parseInt(tmp[1]); + this.molecularBarcode = (tmp.length == 3) ? tmp[2] : ""; // In older BAMS there may be no molecular barcode sequence + } else { + throw new IllegalArgumentException("Unexpected format " + puString + " for PU attribute"); + } + } catch (NumberFormatException e) { + throw new IllegalArgumentException("Unexpected format " + puString + " for PU attribute"); + } + } +} diff --git a/src/main/java/picard/sam/markduplicates/UmiGraph.java b/src/main/java/picard/sam/markduplicates/UmiGraph.java index 12b2359ba..67befa2a0 100644 --- a/src/main/java/picard/sam/markduplicates/UmiGraph.java +++ b/src/main/java/picard/sam/markduplicates/UmiGraph.java @@ -26,7 +26,9 @@ import htsjdk.samtools.DuplicateSet; import htsjdk.samtools.SAMRecord; +import htsjdk.samtools.util.StringUtil; import picard.PicardException; +import picard.util.GraphUtils; import java.util.*; import java.util.stream.Collectors; @@ -65,8 +67,8 @@ public UmiGraph(DuplicateSet set, String umiTag, String assignedUmiTag, boolean // First ensure that all the reads have a UMI, if any reads are missing a UMI throw an exception unless allowMissingUmis is true for (SAMRecord rec : records) { - if(rec.getStringAttribute(umiTag) == null) { - if(allowMissingUmis) { + if (rec.getStringAttribute(umiTag) == null) { + if (allowMissingUmis) { rec.setAttribute(umiTag, ""); } else { throw new PicardException("Read " + rec.getReadName() + " does not contain a UMI with the " + umiTag + " attribute."); @@ -80,7 +82,6 @@ public UmiGraph(DuplicateSet set, String umiTag, String assignedUmiTag, boolean // At first we consider every UMI as if it were its own duplicate set numUmis = umiCounts.size(); umi = new String[numUmis]; - duplicateSetID = IntStream.rangeClosed(0, numUmis-1).toArray(); int i = 0; @@ -90,45 +91,27 @@ public UmiGraph(DuplicateSet set, String umiTag, String assignedUmiTag, boolean } } - // Part of Union-Find with Path Compression to determine the duplicate set a particular UMI belongs to. - private int findRepresentativeUmi(int umiID) { - int representativeUmi = umiID; // All UMIs of a duplicate set will have the same reprsentativeUmi. - while (representativeUmi != duplicateSetID[representativeUmi]) { - representativeUmi = duplicateSetID[representativeUmi]; - } - while (umiID != representativeUmi) { - int newUmiID = duplicateSetID[umiID]; - duplicateSetID[umiID] = representativeUmi; - umiID = newUmiID; - } - return representativeUmi; - } - - // Part of Union-Find with Path Compression that joins to UMIs to be part of the same duplicate set. - private void joinUmisIntoDuplicateSet(final int umi1ID, final int umi2ID) { - int representativeUmi1 = findRepresentativeUmi(umi1ID); - int representativeUmi2 = findRepresentativeUmi(umi2ID); - if (representativeUmi1 == representativeUmi2) return; - duplicateSetID[representativeUmi1] = representativeUmi2; - } - List joinUmisIntoDuplicateSets(final int maxEditDistanceToJoin) { // Compare all UMIs to each other. If they are within maxEditDistanceToJoin // join them to the same duplicate set using the union-find algorithm. + + GraphUtils.Graph umiGraph = new GraphUtils.Graph<>(); for (int i = 0; i < numUmis; i++) { + umiGraph.addNode(i); for (int j = i + 1; j < numUmis; j++) { - if (isWithinEditDistance(umi[i], umi[j], maxEditDistanceToJoin)) { - joinUmisIntoDuplicateSet(i, j); + if (StringUtil.isWithinHammingDistance(umi[i], umi[j], maxEditDistanceToJoin)) { + umiGraph.addEdge(i, j); } } } + final Map umiClusterMap = umiGraph.cluster(); // This ensures that all duplicate sets have unique IDs. During Union-Find a tree is constructed // where each UMI points to parent UMI. This ensures that all UMIs that belong to the same duplicate // set point to the same parent UMI. Note that the parent UMI is only used as a representative UMI and // is not at all related to the assigned UMI. for (int i = 0; i < numUmis; i++) { - duplicateSetID[i] = findRepresentativeUmi(i); + duplicateSetID[i] = umiClusterMap.get(i); } final Map> duplicateSets = new HashMap<>(); @@ -141,8 +124,7 @@ private void joinUmisIntoDuplicateSet(final int umi1ID, final int umi2ID) { if (duplicateSets.containsKey(duplicateSetIndex)) { duplicateSets.get(duplicateSetIndex).add(rec); - } - else { + } else { final List n = new ArrayList<>(); n.add(rec); duplicateSets.put(duplicateSetIndex, n); @@ -155,9 +137,7 @@ private void joinUmisIntoDuplicateSet(final int umi1ID, final int umi2ID) { final List recordList = entry.getValue(); // Add records to the DuplicateSet - for (final SAMRecord rec : recordList) { - ds.add(rec); - } + recordList.forEach(ds::add); // For a particular duplicate set, identify the most common UMI // and use this as an assigned UMI. @@ -174,7 +154,7 @@ private void joinUmisIntoDuplicateSet(final int umi1ID, final int umi2ID) { // Set the records to contain the assigned UMI for (final SAMRecord rec : recordList) { - if (allowMissingUmis && rec.getStringAttribute(umiTag) == "") { + if (allowMissingUmis && rec.getStringAttribute(umiTag).isEmpty()) { // The SAM spec doesn't support empty tags, so we set it to null if it is empty. rec.setAttribute(umiTag, null); } else { @@ -188,25 +168,6 @@ private void joinUmisIntoDuplicateSet(final int umi1ID, final int umi2ID) { return duplicateSetList; } - // Determine if the two strings s1 and s2 are within edit distance of editDistance. - // TODO: use HTSJDK version when this become available - private boolean isWithinEditDistance(final String s1, final String s2, final int editDistance) { - // Comparing edit distance of strings with different lengths is not supported - if (s1.length() != s2.length()) { - throw new PicardException("Attempting to determine if two UMIs of different length were within a specified edit distance."); - } - int measuredDistance = 0; - for (int i = 0;i < s1.length();i++) { - if (s1.charAt(i) != s2.charAt(i)) { - measuredDistance++; - if (measuredDistance > editDistance) { - return false; - } - } - } - return true; - } - // Create a map that maps a umi to the duplicateSetID private Map getDuplicateSetsFromUmis() { final Map duplicateSetsFromUmis = new HashMap<>(); diff --git a/src/main/java/picard/util/BaitDesigner.java b/src/main/java/picard/util/BaitDesigner.java index 2dbb05584..381243d47 100644 --- a/src/main/java/picard/util/BaitDesigner.java +++ b/src/main/java/picard/util/BaitDesigner.java @@ -44,7 +44,7 @@ programGroup = None.class ) public class BaitDesigner extends CommandLineProgram { -static final String USAGE_SUMMARY = "Designs oligonucleotide baits for hybrid selection reactions. "; +static final String USAGE_SUMMARY = "Designs oligonucleotide baits for hybrid selection reactions."; static final String USAGE_DETAILS = "

This tool is used to design custom bait sets for hybrid selection experiments. The following " + "files are input into BaitDesigner: a (TARGET) interval list indicating the sequences of interest, e.g. exons with their " + "respective coordinates, a reference sequence, and a unique identifier string (DESIGN_NAME).

" + diff --git a/src/main/java/picard/util/GraphUtils.java b/src/main/java/picard/util/GraphUtils.java new file mode 100644 index 000000000..ef376563f --- /dev/null +++ b/src/main/java/picard/util/GraphUtils.java @@ -0,0 +1,113 @@ +/* +* The MIT License +* +* Copyright (c) 2016 The Broad Institute +* +* Permission is hereby granted, free of charge, to any person obtaining a copy +* of this software and associated documentation files (the "Software"), to deal +* in the Software without restriction, including without limitation the rights +* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +* copies of the Software, and to permit persons to whom the Software is +* furnished to do so, subject to the following conditions: +* +* The above copyright notice and this permission notice shall be included in +* all copies or substantial portions of the Software. +* +* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +* THE SOFTWARE. +*/ + +package picard.util; + +import java.util.*; +import java.util.stream.Collectors; +import java.util.stream.IntStream; + +/** + * Created by farjoun on 11/2/16. + */ +public class GraphUtils { + + static public class Graph> { + final private List nodes; + final private List> neighbors; + + /** + * returns the cluster map of connected components + * + * @return Nodes that point to the same integer are in the same cluster. + */ + public Map cluster() { + + final int[] cluster = IntStream.range(0, nodes.size()).toArray(); + + IntStream.range(0, neighbors.size()).forEach(i -> + neighbors.get(i).stream().forEach(j -> joinNodes(cluster, j, i))); + + return nodes.stream().collect(Collectors.toMap(n -> n, n -> cluster[nodes.indexOf(n)])); + + } + + public Graph() { + nodes = new ArrayList<>(); + neighbors = new ArrayList<>(); + } + + /* directed and private */ + private void addNeighbor(final Integer fromNode, final Integer toNode) { + final List fromNodesNeighbors = neighbors.get(fromNode); + + if (!fromNodesNeighbors.contains(toNode)) { + fromNodesNeighbors.add(toNode); + } + } + + public Integer addNode(final Node singleton) { + + if (!nodes.contains(singleton)) { + nodes.add(singleton); + neighbors.add(new ArrayList<>()); + } + return nodes.indexOf(singleton); + } + + /* bidirectional and public */ + public void addEdge(Node left, Node right) { + + final int leftIndex = addNode(left); + if (left == right) return; + + final int rightIndex = addNode(right); + + addNeighbor(leftIndex, rightIndex); + addNeighbor(rightIndex, leftIndex); + } + + // Part of Union-Find with Path Compression that joins to nodes to be part of the same cluster. + private static void joinNodes(int[] grouping, final int nodeId1, final int nodeId2) { + final int repNode1 = findRepNode(grouping, nodeId1); + final int repNode2 = findRepNode(grouping, nodeId2); + if (repNode1 == repNode2) return; + grouping[repNode1] = repNode2; + } + + // Part of Union-Find with Path Compression to determine the duplicate set a particular UMI belongs to. + private static int findRepNode(final int[] grouping, int nodeId) { + int representativeUmi = nodeId; // All UMIs of a duplicate set will have the same reprsentativeUmi. + while (representativeUmi != grouping[representativeUmi]) { + representativeUmi = grouping[representativeUmi]; + } + while (nodeId != representativeUmi) { + int newUmiID = grouping[nodeId]; + grouping[nodeId] = representativeUmi; + nodeId = newUmiID; + } + return representativeUmi; + } + } +} diff --git a/src/main/java/picard/util/ReflectionUtil.java b/src/main/java/picard/util/ReflectionUtil.java new file mode 100644 index 000000000..9922b45d6 --- /dev/null +++ b/src/main/java/picard/util/ReflectionUtil.java @@ -0,0 +1,49 @@ +/* + * The MIT License + * + * Copyright (c) 2015 The Broad Institute + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. + */ + +package picard.util; + +import java.lang.reflect.Field; + +/** + * Class which contains utility functions that use reflection. + * + * @author Yossi Farjoun + */ +public class ReflectionUtil { + + static public void copyFromBaseClass(final T base, final S derived) { + final Class baseClazz = (Class) base.getClass(); + + for (Field f : baseClazz.getFields()) { + + try { + f.set(derived, f.get(base)); + } catch (IllegalAccessException e) { + throw new RuntimeException(e.getMessage() + "when trying to access" + f.getName()); + } + + } + } +} diff --git a/src/test/java/picard/analysis/CollectGcBiasMetricsTest.java b/src/test/java/picard/analysis/CollectGcBiasMetricsTest.java index 18adc90de..7e8990b99 100644 --- a/src/test/java/picard/analysis/CollectGcBiasMetricsTest.java +++ b/src/test/java/picard/analysis/CollectGcBiasMetricsTest.java @@ -248,8 +248,9 @@ public void runWindowsComparisonTest() throws IOException { if (metrics.ACCUMULATION_LEVEL.equals(ACCUMULATION_LEVEL_ALL_READS)) { Assert.assertEquals(metrics.WINDOWS, details.get(i).WINDOWS); i++; + } else { + break; } - else {break;} } } @@ -261,6 +262,8 @@ public void runWindowsComparisonTest() throws IOException { public File build (final List setBuilder, final File unsortedSam, final SAMFileHeader header) throws IOException { final File sortedSam = File.createTempFile("CollectGcBias", ".bam", TEST_DIR); sortedSam.deleteOnExit(); + final File sortedSamIdx = new File(TEST_DIR, sortedSam.getName() + ".idx"); + sortedSamIdx.deleteOnExit(); final SAMFileWriter writer = new SAMFileWriterFactory() .setCreateIndex(true).makeBAMWriter(header, false, unsortedSam); diff --git a/src/test/java/picard/analysis/CollectWgsMetricsTest.java b/src/test/java/picard/analysis/CollectWgsMetricsTest.java index 1a24eeae6..ab5a4304c 100644 --- a/src/test/java/picard/analysis/CollectWgsMetricsTest.java +++ b/src/test/java/picard/analysis/CollectWgsMetricsTest.java @@ -139,6 +139,9 @@ void setupBuilder() throws IOException { final File tempSamFileUnsorted = File.createTempFile("CollectWgsMetrics", ".bam", TEST_DIR); tempSamFileUnsorted.deleteOnExit(); tempSamFile.deleteOnExit(); + final File sortedSamIdx = new File(TEST_DIR, tempSamFile.getName() + ".idx"); + sortedSamIdx.deleteOnExit(); + final SAMFileHeader header = new SAMFileHeader(); //Check that dictionary file is readable and then set header dictionary diff --git a/src/test/java/picard/fingerprint/CrosscheckFingerprintsTest.java b/src/test/java/picard/fingerprint/CrosscheckFingerprintsTest.java new file mode 100644 index 000000000..5403ae960 --- /dev/null +++ b/src/test/java/picard/fingerprint/CrosscheckFingerprintsTest.java @@ -0,0 +1,342 @@ +package picard.fingerprint; + +import htsjdk.samtools.metrics.MetricsFile; +import htsjdk.samtools.util.IOUtil; +import org.testng.Assert; +import org.testng.annotations.BeforeTest; +import org.testng.annotations.DataProvider; +import org.testng.annotations.Test; +import picard.util.TabbedTextFileWithHeaderParser; +import picard.vcf.SamTestUtils; + +import java.io.*; +import java.lang.reflect.Field; +import java.util.*; +import java.util.function.Function; +import java.util.stream.Collectors; + +import static picard.fingerprint.FingerprintIdDetails.multipleValuesString; + +/** + * Tests for CrosscheckFingerprints + */ +public class CrosscheckFingerprintsTest { + + private final static File TEST_DIR = new File("testdata/picard/fingerprint/"); + private final static File HAPLOTYPE_MAP = new File(TEST_DIR, "Homo_sapiens_assembly19.haplotype_database.subset.txt"); + + static private final File NA12891_r1_sam = new File(TEST_DIR, "NA12891.over.fingerprints.r1.sam"); + static private final File NA12891_r2_sam = new File(TEST_DIR, "NA12891.over.fingerprints.r2.sam"); + + //this is a copy of a previous one, but with a different sample name + static private final File NA12891_named_NA12892_r1_sam = new File(TEST_DIR, "NA12891_named_NA12892.over.fingerprints.r1.sam"); + + static private final File NA12892_r1_sam = new File(TEST_DIR, "NA12892.over.fingerprints.r1.sam"); + static private final File NA12892_r2_sam = new File(TEST_DIR, "NA12892.over.fingerprints.r2.sam"); + + static private File NA12891_r1, NA12891_r2, NA12891_named_NA12892_r1, NA12892_r1, NA12892_r2; + + static private final int NA12891_r1_RGs = 27; + static private final int NA12891_r2_RGs = 26; + static private final int NA12892_r1_RGs = 25; + static private final int NA12892_r2_RGs = 26; + + private static final Map> lookupMap = new HashMap<>(4); + + @BeforeTest + static public void setup() throws IOException { + NA12891_r1 = SamTestUtils.createIndexedBam(NA12891_r1_sam, NA12891_r1_sam); + NA12891_r2 = SamTestUtils.createIndexedBam(NA12891_r2_sam, NA12891_r2_sam); + NA12891_named_NA12892_r1 = SamTestUtils.createIndexedBam(NA12891_named_NA12892_r1_sam, NA12891_named_NA12892_r1_sam); + NA12892_r1 = SamTestUtils.createIndexedBam(NA12892_r1_sam, NA12892_r1_sam); + NA12892_r2 = SamTestUtils.createIndexedBam(NA12892_r2_sam, NA12892_r2_sam); + + lookupMap.put(CrosscheckMetric.DataType.FILE, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.FILE).addAll(Arrays.asList("LEFT_FILE", "RIGHT_FILE")); + + lookupMap.put(CrosscheckMetric.DataType.SAMPLE, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.SAMPLE).addAll(Arrays.asList("LEFT_SAMPLE", "RIGHT_SAMPLE")); + lookupMap.get(CrosscheckMetric.DataType.SAMPLE).addAll(lookupMap.get(CrosscheckMetric.DataType.FILE)); + + lookupMap.put(CrosscheckMetric.DataType.LIBRARY, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.LIBRARY).addAll(Arrays.asList("LEFT_LIBRARY", "RIGHT_LIBRARY")); + lookupMap.get(CrosscheckMetric.DataType.LIBRARY).addAll(lookupMap.get(CrosscheckMetric.DataType.SAMPLE)); + + lookupMap.put(CrosscheckMetric.DataType.READGROUP, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.READGROUP).addAll(Arrays.asList("LEFT_RUN_BARCODE", "LEFT_LANE", + "LEFT_MOLECULAR_BARCODE_SEQUENCE","RIGHT_RUN_BARCODE", + "RIGHT_LANE", "RIGHT_MOLECULAR_BARCODE_SEQUENCE")); + lookupMap.get(CrosscheckMetric.DataType.READGROUP).addAll(lookupMap.get(CrosscheckMetric.DataType.LIBRARY)); + } + + @DataProvider(name = "bamFilesRGs") + public Object[][] bamFilesRGs() { + return new Object[][] { + {NA12891_r1, NA12891_r2, false, 0, (NA12891_r1_RGs + NA12891_r2_RGs) * (NA12891_r1_RGs + NA12891_r2_RGs + 1) / 2}, + {NA12891_r1, NA12892_r1, false, 0, (NA12891_r1_RGs + NA12892_r1_RGs) * (NA12891_r1_RGs + NA12892_r1_RGs + 1) / 2}, + {NA12891_r1, NA12892_r2, false, 0, (NA12891_r1_RGs + NA12892_r2_RGs) * (NA12891_r1_RGs + NA12892_r2_RGs + 1) / 2}, + {NA12892_r1, NA12892_r2, false, 0, (NA12892_r1_RGs + NA12892_r2_RGs) * (NA12892_r1_RGs + NA12892_r2_RGs + 1) / 2}, + {NA12892_r2, NA12891_r2, false, 0, (NA12892_r2_RGs + NA12891_r2_RGs) * (NA12892_r2_RGs + NA12891_r2_RGs + 1) / 2}, + {NA12892_r2, NA12891_r1, false, 0, (NA12892_r2_RGs + NA12891_r1_RGs) * (NA12892_r2_RGs + NA12891_r1_RGs + 1) / 2}, + {NA12891_r1, NA12891_r2, true, 0, (NA12891_r1_RGs + NA12891_r2_RGs) * (NA12891_r1_RGs + NA12891_r2_RGs + 1) / 2}, + {NA12891_r1, NA12892_r1, true, 1, (NA12891_r1_RGs + NA12892_r1_RGs) * (NA12891_r1_RGs + NA12892_r1_RGs + 1) / 2}, + {NA12891_r1, NA12892_r2, true, 1, (NA12891_r1_RGs + NA12892_r2_RGs) * (NA12891_r1_RGs + NA12892_r2_RGs + 1) / 2}, + {NA12892_r1, NA12892_r2, true, 0, (NA12892_r1_RGs + NA12892_r2_RGs) * (NA12892_r1_RGs + NA12892_r2_RGs + 1) / 2}, + {NA12892_r2, NA12891_r2, true, 1, (NA12892_r2_RGs + NA12891_r2_RGs) * (NA12892_r2_RGs + NA12891_r2_RGs + 1) / 2}, + {NA12892_r2, NA12891_r1, true, 1, (NA12892_r2_RGs + NA12891_r1_RGs) * (NA12892_r2_RGs + NA12891_r1_RGs + 1) / 2} + }; + } + + @Test(dataProvider = "bamFilesRGs") + public void testCrossCheckRGs(final File file1, final File file2, final boolean expectAllMatch, final int expectedRetVal, final int expectedNMetrics) throws IOException { + + File metrics = File.createTempFile("Fingerprinting", "NA1291.RG.crosscheck_metrics"); + metrics.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -2.0, + "EXPECT_ALL_GROUPS_TO_MATCH=" + expectAllMatch + }; + + doTest(args, metrics, expectedRetVal, expectedNMetrics, CrosscheckMetric.DataType.READGROUP, expectAllMatch); + } + + @DataProvider(name = "bamFilesLBs") + public Object[][] bamFilesLBs() { + + return new Object[][]{ + {NA12891_r1, NA12891_r2, 0}, + {NA12891_r1, NA12892_r1, 0}, + {NA12892_r2, NA12891_r2, 0}, + {NA12892_r2, NA12891_r1, 0}, + {NA12891_r1, NA12891_named_NA12892_r1_sam, 1}, //error since expected match but found a mismatch + {NA12892_r1, NA12891_named_NA12892_r1_sam, 1}, //error since expected mismatch but found a match + {NA12891_r2, NA12891_named_NA12892_r1_sam, 1}, //error since expected match but found a mismatch + {NA12892_r2, NA12891_named_NA12892_r1_sam, 1}, //error since expected mismatch but found a match + }; + } + + @Test + public void testCrossCheckLBsWithClustering() throws IOException { + File metrics = File.createTempFile("Fingerprinting", "NA1291.LB.crosscheck_metrics"); + metrics.deleteOnExit(); + + { + final String[] args = new String[]{ + "INPUT=" + NA12891_r1.getAbsolutePath(), + "INPUT=" + NA12891_r2.getAbsolutePath(), + "INPUT=" + NA12892_r1.getAbsolutePath(), + "INPUT=" + NA12892_r2.getAbsolutePath(), + "INPUT=" + NA12891_named_NA12892_r1_sam.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -1.0, + "CROSSCHECK_BY=LIBRARY" + }; + final int nLibs = 5; + doTest(args, metrics, 1, nLibs * (nLibs + 1) / 2, CrosscheckMetric.DataType.LIBRARY); + } + + File cluster = File.createTempFile("Fingerprinting", "NA1291.LB.crosscheck_cluster_metrics"); + cluster.deleteOnExit(); + + { + final String[] args = new String[]{ + "INPUT=" + metrics.getAbsolutePath(), + "OUTPUT=" + cluster.getAbsolutePath(), + "LOD_THRESHOLD=" + 1.0, + }; + + final ClusterCrosscheckMetrics clusterer = new ClusterCrosscheckMetrics(); + Assert.assertEquals(clusterer.instanceMain(args), 0); + } + + IOUtil.assertFileIsReadable(cluster); + + final MetricsFile> metricsOutput = new MetricsFile<>(); + metricsOutput.read(new FileReader(cluster)); + + final List collect = metricsOutput + .getMetrics() + .stream() + .map(m -> m.CLUSTER) + .collect(Collectors.groupingBy(Function.identity(), Collectors.counting())) + .values() + .stream() + .sorted() + .collect(Collectors.toList()); + + Assert.assertEquals(collect.get(0), (Long)3L); // 2*3/2 + Assert.assertEquals(collect.get(1), (Long)6L); // 3*4/2 + + } + + @Test(dataProvider = "bamFilesLBs") + public void testCrossCheckLBs(final File file1, final File file2, final int expectedRetVal) throws IOException { + File metrics = File.createTempFile("Fingerprinting", "NA1291.LB.crosscheck_metrics"); + metrics.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -1.0, + "CROSSCHECK_BY=LIBRARY" + }; + final int numLibs=2; + doTest(args, metrics, expectedRetVal, numLibs * (numLibs + 1) / 2, CrosscheckMetric.DataType.LIBRARY); + } + + + @DataProvider(name = "bamFilesSources") + public Object[][] bamFilesSources() { + + return new Object[][]{ + {NA12891_r1, NA12891_r2, 0}, + {NA12892_r1, NA12892_r2, 0}, + {NA12891_r1, NA12892_r1, 0}, + {NA12892_r2, NA12891_r2, 0}, + {NA12892_r2, NA12891_named_NA12892_r1, 1}, // the two files contain different samples one has wrong name + {NA12891_r2, NA12891_named_NA12892_r1, 1}, // unexpected match + {NA12892_r1, NA12891_named_NA12892_r1, 1}, // the two files contain different samples one has wrong name + {NA12891_r1, NA12891_named_NA12892_r1, 1}, // unexpected match + }; + } + + @Test(dataProvider = "bamFilesSources") + public void testCrossCheckSources(final File file1, final File file2, final int expectedRetVal) throws IOException { + File metrics = File.createTempFile("Fingerprinting", "NA1291.Sources.crosscheck_metrics"); + metrics.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -1.0, + "CROSSCHECK_BY=FILE" + }; + + doTest(args, metrics, expectedRetVal, 2 * 3 / 2, CrosscheckMetric.DataType.FILE); + + } + + @DataProvider(name = "bamFilesSMs") + public Object[][] bamFilesSMs() { + + return new Object[][] { + {NA12891_r1, NA12891_r2, 0, 1}, + {NA12891_r1, NA12892_r1, 0, 2}, + {NA12892_r2, NA12891_r2, 0, 2}, + {NA12892_r2, NA12891_named_NA12892_r1, 0, 1}, // no error since only one sample in aggregate + {NA12891_r2, NA12891_named_NA12892_r1, 1, 2}, // unexpected match + {NA12892_r1, NA12891_named_NA12892_r1, 0, 1}, // no error since only one sample in aggregate + {NA12891_r1, NA12891_named_NA12892_r1, 1, 2}, // unexpected match + }; + } + + @Test(dataProvider = "bamFilesSMs") + public void testCrossCheckSMs(final File file1, final File file2, final int expectedRetVal, final int numberOfSamples) throws IOException { + File metrics = File.createTempFile("Fingerprinting", "NA1291.SM.crosscheck_metrics"); + metrics.deleteOnExit(); + + File matrix = File.createTempFile("Fingerprinting", "NA1291.SM.matrix"); + matrix.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "MATRIX_OUTPUT=" + matrix.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -1.0, + "CROSSCHECK_BY=SAMPLE" + }; + doTest(args, metrics, expectedRetVal, numberOfSamples * (numberOfSamples + 1) / 2, CrosscheckMetric.DataType.SAMPLE); + + TabbedTextFileWithHeaderParser matrixParser = new TabbedTextFileWithHeaderParser(matrix); + Assert.assertEquals(matrixParser.columnLabelsList().size(), numberOfSamples + 1 ); + + } + + private void doTest(final String[] args, final File metrics, final int expectedRetVal, final int expectedNMetrics, final CrosscheckMetric.DataType expectedType) throws IOException { + doTest(args, metrics, expectedRetVal, expectedNMetrics, expectedType, false); + } + + private void doTest(final String[] args, final File metrics, final int expectedRetVal, final int expectedNMetrics, final CrosscheckMetric.DataType expectedType, final boolean expectAllMatch) throws IOException { + + final CrosscheckFingerprints crossChecker = new CrosscheckFingerprints(); + Assert.assertEquals(crossChecker.instanceMain(args), expectedRetVal); + + final MetricsFile> metricsOutput = new MetricsFile<>(); + metricsOutput.read(new FileReader(metrics)); + + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m -> m.DATA_TYPE != expectedType)); + + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m-> m.LOD_SCORE_NORMAL_TUMOR == null)); + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m-> m.LOD_SCORE == null)); + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m-> m.LOD_SCORE_TUMOR_NORMAL == null)); + + if (expectAllMatch) { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .allMatch(m -> m.RESULT == CrosscheckMetric.FingerprintResult.INCONCLUSIVE || + m.RESULT.isMatch() == m.LEFT_SAMPLE.equals(m.RIGHT_SAMPLE))); + } else if (expectedRetVal == 0) { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .allMatch(m -> m.RESULT == CrosscheckMetric.FingerprintResult.INCONCLUSIVE || + m.RESULT.isExpected())); + } else { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .anyMatch(m -> !m.RESULT.isExpected())); + } + + Assert.assertEquals(metricsOutput.getMetrics().size(), expectedNMetrics); + + // at the readgroup level things aren't always conclusive... + if (!metricsOutput.getMetrics().isEmpty() && expectedType != CrosscheckMetric.DataType.READGROUP) { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .anyMatch(m -> m.RESULT != CrosscheckMetric.FingerprintResult.INCONCLUSIVE)); + } + + //check that fields that should have an actual value, indeed do + for(final String fieldName : lookupMap.get(expectedType)) { + try { + final Field field = CrosscheckMetric.class.getField(fieldName); + Assert.assertTrue(metricsOutput.getMetrics().stream().allMatch(m -> { + try { + return field.get(m) != multipleValuesString && field.get(m) != null; + } catch (IllegalAccessException e) { + e.printStackTrace(); + return false; + } + })); + + } catch (NoSuchFieldException e) { + e.printStackTrace(); + assert false; + } + } + } + + @Test + public void canWriteToDevNull() throws IOException { + File f = new File("/dev/null"); + Assert.assertTrue(f.canRead()); + + final OutputStream stream = new FileOutputStream(f); + final BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(stream)); + + writer.write("Just a test"); + writer.close(); + + } +} \ No newline at end of file diff --git a/src/test/java/picard/fingerprint/CrosscheckReadGroupFingerprintsTest.java b/src/test/java/picard/fingerprint/CrosscheckReadGroupFingerprintsTest.java new file mode 100644 index 000000000..4627e1617 --- /dev/null +++ b/src/test/java/picard/fingerprint/CrosscheckReadGroupFingerprintsTest.java @@ -0,0 +1,271 @@ +package picard.fingerprint; + +import htsjdk.samtools.metrics.MetricsFile; +import org.testng.Assert; +import org.testng.annotations.BeforeTest; +import org.testng.annotations.DataProvider; +import org.testng.annotations.Test; +import picard.vcf.SamTestUtils; + +import java.io.*; +import java.lang.reflect.Field; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.util.*; +import java.util.stream.Stream; + +import static picard.fingerprint.FingerprintIdDetails.multipleValuesString; + +/** + * Tests for CrosscheckReadGroupFingerprints + */ +public class CrosscheckReadGroupFingerprintsTest { + + private final static File TEST_DIR = new File("testdata/picard/fingerprint/"); + private final static File HAPLOTYPE_MAP = new File(TEST_DIR, "Homo_sapiens_assembly19.haplotype_database.subset.txt"); + + static private final File NA12891_r1_sam = new File(TEST_DIR, "NA12891.over.fingerprints.r1.sam"); + static private final File NA12891_r2_sam = new File(TEST_DIR, "NA12891.over.fingerprints.r2.sam"); + + //this is a copy of a previous one, but with a different sample name + static private final File NA12891_named_NA12892_r1_sam = new File(TEST_DIR, "NA12891_named_NA12892.over.fingerprints.r1.sam"); + + static private final File NA12892_r1_sam = new File(TEST_DIR, "NA12892.over.fingerprints.r1.sam"); + static private final File NA12892_r2_sam = new File(TEST_DIR, "NA12892.over.fingerprints.r2.sam"); + + static private File NA12891_r1, NA12891_r2, NA12891_named_NA12892_r1, NA12892_r1, NA12892_r2; + + static private final int NA12891_r1_RGs = 27; + static private final int NA12891_r2_RGs = 26; + static private final int NA12892_r1_RGs = 25; + static private final int NA12892_r2_RGs = 26; + + private static final Map> lookupMap = new HashMap<>(4); + + @BeforeTest + static public void setup() throws IOException { + NA12891_r1 = SamTestUtils.createIndexedBam(NA12891_r1_sam, NA12891_r1_sam); + NA12891_r2 = SamTestUtils.createIndexedBam(NA12891_r2_sam, NA12891_r2_sam); + NA12891_named_NA12892_r1 = SamTestUtils.createIndexedBam(NA12891_named_NA12892_r1_sam, NA12891_named_NA12892_r1_sam); + NA12892_r1 = SamTestUtils.createIndexedBam(NA12892_r1_sam, NA12892_r1_sam); + NA12892_r2 = SamTestUtils.createIndexedBam(NA12892_r2_sam, NA12892_r2_sam); + + lookupMap.put(CrosscheckMetric.DataType.FILE, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.FILE).addAll(Arrays.asList("LEFT_FILE", "RIGHT_FILE")); + + lookupMap.put(CrosscheckMetric.DataType.SAMPLE, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.SAMPLE).addAll(Arrays.asList("LEFT_SAMPLE", "RIGHT_SAMPLE")); + lookupMap.get(CrosscheckMetric.DataType.SAMPLE).addAll(lookupMap.get(CrosscheckMetric.DataType.FILE)); + + lookupMap.put(CrosscheckMetric.DataType.LIBRARY, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.LIBRARY).addAll(Arrays.asList("LEFT_LIBRARY", "RIGHT_LIBRARY")); + lookupMap.get(CrosscheckMetric.DataType.LIBRARY).addAll(lookupMap.get(CrosscheckMetric.DataType.SAMPLE)); + + lookupMap.put(CrosscheckMetric.DataType.READGROUP, new ArrayList<>()); + lookupMap.get(CrosscheckMetric.DataType.READGROUP).addAll(Arrays.asList("LEFT_RUN_BARCODE", "LEFT_LANE", + "LEFT_MOLECULAR_BARCODE_SEQUENCE","RIGHT_RUN_BARCODE", + "RIGHT_LANE", "RIGHT_MOLECULAR_BARCODE_SEQUENCE")); + lookupMap.get(CrosscheckMetric.DataType.READGROUP).addAll(lookupMap.get(CrosscheckMetric.DataType.LIBRARY)); + } + + @DataProvider(name = "bamFilesRGs") + public Object[][] bamFilesRGs() { + return new Object[][] { + {NA12891_r1, NA12891_r2, false, 0, (NA12891_r1_RGs + NA12891_r2_RGs) + 1}, + {NA12891_r1, NA12892_r1, false, 0, (NA12891_r1_RGs + NA12892_r1_RGs) + 1}, + {NA12891_r1, NA12892_r2, false, 0, (NA12891_r1_RGs + NA12892_r2_RGs) + 1}, + {NA12892_r1, NA12892_r2, false, 0, (NA12892_r1_RGs + NA12892_r2_RGs) + 1}, + {NA12892_r2, NA12891_r2, false, 0, (NA12892_r2_RGs + NA12891_r2_RGs) + 1}, + {NA12892_r2, NA12891_r1, false, 0, (NA12892_r2_RGs + NA12891_r1_RGs) + 1}, + {NA12891_r1, NA12891_r2, true, 0, (NA12891_r1_RGs + NA12891_r2_RGs) + 1}, + {NA12891_r1, NA12892_r1, true, 1, (NA12891_r1_RGs + NA12892_r1_RGs) + 1}, + {NA12891_r1, NA12892_r2, true, 1, (NA12891_r1_RGs + NA12892_r2_RGs) + 1}, + {NA12892_r1, NA12892_r2, true, 0, (NA12892_r1_RGs + NA12892_r2_RGs) + 1}, + {NA12892_r2, NA12891_r2, true, 1, (NA12892_r2_RGs + NA12891_r2_RGs) + 1}, + {NA12892_r2, NA12891_r1, true, 1, (NA12892_r2_RGs + NA12891_r1_RGs) + 1} + }; + } + + @Test(dataProvider = "bamFilesRGs") + public void testCrossCheckRGs(final File file1, final File file2, final boolean expectAllMatch, final int expectedRetVal, final int expectedNMetrics) throws IOException { + + File metrics = File.createTempFile("Fingerprinting", "NA1291.RG.crosscheck_metrics"); + metrics.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -2.0, + "EXPECT_ALL_GROUPS_TO_MATCH=" + expectAllMatch + }; + + doMatrixTest(args, metrics, expectedRetVal, expectedNMetrics, CrosscheckMetric.DataType.READGROUP, expectAllMatch); + } + + @DataProvider(name = "bamFilesLBs") + public Object[][] bamFilesLBs() { + + return new Object[][]{ + {NA12891_r1, NA12891_r2, 0}, + {NA12891_r1, NA12892_r1, 0}, + {NA12892_r2, NA12891_r2, 0}, + {NA12892_r2, NA12891_r1, 0}, + {NA12891_r1, NA12891_named_NA12892_r1_sam, 1}, //error since expected match but found a mismatch + {NA12892_r1, NA12891_named_NA12892_r1_sam, 1}, //error since expected mismatch but found a match + {NA12891_r2, NA12891_named_NA12892_r1_sam, 1}, //error since expected match but found a mismatch + {NA12892_r2, NA12891_named_NA12892_r1_sam, 1}, //error since expected mismatch but found a match + }; + } + + @Test(dataProvider = "bamFilesLBs") + public void testCrossCheckLBs(final File file1, final File file2, final int expectedRetVal) throws IOException { + File metrics = File.createTempFile("Fingerprinting", "NA1291.LB.crosscheck_metrics"); + metrics.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -1.0, + "CROSSCHECK_LIBRARIES=true" + }; + final int numLibs=2; + doTest(args, metrics, expectedRetVal, numLibs * (numLibs + 1) / 2, CrosscheckMetric.DataType.LIBRARY); + } + + @DataProvider(name = "bamFilesSources") + public Object[][] bamFilesSources() { + + return new Object[][]{ + {NA12891_r1, NA12891_r2, 0}, + {NA12892_r1, NA12892_r2, 0}, + {NA12891_r1, NA12892_r1, 0}, + {NA12892_r2, NA12891_r2, 0}, + {NA12892_r2, NA12891_named_NA12892_r1, 1}, // the two files contain different samples one has wrong name + {NA12891_r2, NA12891_named_NA12892_r1, 1}, // unexpected match + {NA12892_r1, NA12891_named_NA12892_r1, 1}, // the two files contain different samples one has wrong name + {NA12891_r1, NA12891_named_NA12892_r1, 1}, // unexpected match + }; + } + + @DataProvider(name = "bamFilesSMs") + public Object[][] bamFilesSMs() { + + return new Object[][] { + {NA12891_r1, NA12891_r2, 0, 1}, + {NA12891_r1, NA12892_r1, 0, 2}, + {NA12892_r2, NA12891_r2, 0, 2}, + {NA12892_r2, NA12891_named_NA12892_r1, 0, 1}, // no error since only one sample in aggregate + {NA12891_r2, NA12891_named_NA12892_r1, 1, 2}, // unexpected match + {NA12892_r1, NA12891_named_NA12892_r1, 0, 1}, // no error since only one sample in aggregate + {NA12891_r1, NA12891_named_NA12892_r1, 1, 2}, // unexpected match + }; + } + + @Test(dataProvider = "bamFilesSMs") + public void testCrossCheckSMs(final File file1, final File file2, final int expectedRetVal, final int numberOfSamples) throws IOException { + File metrics = File.createTempFile("Fingerprinting", "NA1291.SM.crosscheck_metrics"); + metrics.deleteOnExit(); + + final String[] args = new String[]{ + "INPUT=" + file1.getAbsolutePath(), + "INPUT=" + file2.getAbsolutePath(), + "OUTPUT=" + metrics.getAbsolutePath(), + "HAPLOTYPE_MAP=" + HAPLOTYPE_MAP, + "LOD_THRESHOLD=" + -1.0, + "CROSSCHECK_SAMPLES=true" + }; + doTest(args, metrics, expectedRetVal, numberOfSamples * (numberOfSamples + 1) / 2, CrosscheckMetric.DataType.SAMPLE); + } + + private void doTest(final String[] args, final File metrics, final int expectedRetVal, final int expectedNMetrics, final CrosscheckMetric.DataType expectedType) throws IOException { + doTest(args, metrics, expectedRetVal, expectedNMetrics, expectedType, false); + } + + private void doTest(final String[] args, final File metrics, final int expectedRetVal, final int expectedNMetrics, final CrosscheckMetric.DataType expectedType, final boolean expectAllMatch) throws IOException { + + final CrosscheckReadGroupFingerprints crossChecker = new CrosscheckReadGroupFingerprints(); + Assert.assertEquals(crossChecker.instanceMain(args), expectedRetVal); + + final MetricsFile> metricsOutput = new MetricsFile<>(); + metricsOutput.read(new FileReader(metrics)); + + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m -> m.DATA_TYPE != expectedType)); + + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m-> m.LOD_SCORE_NORMAL_TUMOR == null)); + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m-> m.LOD_SCORE == null)); + Assert.assertFalse(metricsOutput.getMetrics().stream() + .anyMatch(m-> m.LOD_SCORE_TUMOR_NORMAL == null)); + + if (expectAllMatch) { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .allMatch(m -> m.RESULT == CrosscheckMetric.FingerprintResult.INCONCLUSIVE || + m.RESULT.isMatch() == m.LEFT_SAMPLE.equals(m.RIGHT_SAMPLE))); + } else if (expectedRetVal == 0) { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .allMatch(m -> m.RESULT == CrosscheckMetric.FingerprintResult.INCONCLUSIVE || + m.RESULT.isExpected())); + } else { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .anyMatch(m -> !m.RESULT.isExpected())); + } + + Assert.assertEquals(metricsOutput.getMetrics().size(), expectedNMetrics); + + // at the readgroup level things aren't always conclusive... + if (!metricsOutput.getMetrics().isEmpty() && expectedType != CrosscheckMetric.DataType.READGROUP) { + Assert.assertTrue(metricsOutput.getMetrics().stream() + .anyMatch(m -> m.RESULT != CrosscheckMetric.FingerprintResult.INCONCLUSIVE)); + } + + //check that fields that should have an actual value, indeed do + for(final String fieldName : lookupMap.get(expectedType)) { + try { + final Field field = CrosscheckMetric.class.getField(fieldName); + Assert.assertTrue(metricsOutput.getMetrics().stream().allMatch(m -> { + try { + return field.get(m) != multipleValuesString && field.get(m) != null; + } catch (IllegalAccessException e) { + e.printStackTrace(); + return false; + } + })); + + } catch (NoSuchFieldException e) { + e.printStackTrace(); + assert false; + } + } + } + + private void doMatrixTest(final String[] args, final File metrics, final int expectedRetVal, final int expectedNMetrics, final CrosscheckMetric.DataType expectedType, final boolean expectAllMatch) throws IOException { + + final CrosscheckReadGroupFingerprints crossChecker = new CrosscheckReadGroupFingerprints(); + Assert.assertEquals(crossChecker.instanceMain(args), expectedRetVal); + Assert.assertTrue(metrics.canRead()); + + try (Stream lines = Files.lines(metrics.toPath(), Charset.defaultCharset())) { + long numOfLines = lines.count(); + Assert.assertEquals(numOfLines, expectedNMetrics); + } + } + + @Test + public void canWriteToDevNull() throws IOException { + File f = new File("/dev/null"); + Assert.assertTrue(f.canRead()); + + final OutputStream stream = new FileOutputStream(f); + final BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(stream)); + + writer.write("Just a test"); + writer.close(); + + } +} \ No newline at end of file diff --git a/src/test/java/picard/fingerprint/FingerprintCheckerTest.java b/src/test/java/picard/fingerprint/FingerprintCheckerTest.java index 5c6973e40..f64dad9fe 100644 --- a/src/test/java/picard/fingerprint/FingerprintCheckerTest.java +++ b/src/test/java/picard/fingerprint/FingerprintCheckerTest.java @@ -1,5 +1,6 @@ package picard.fingerprint; +import htsjdk.samtools.ValidationStringency; import org.testng.Assert; import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; @@ -9,6 +10,7 @@ import java.io.File; import java.io.IOException; import java.util.*; +import java.util.concurrent.TimeUnit; /** * Created by farjoun on 8/27/15. @@ -112,4 +114,56 @@ public void testCheckFingerprints(File vcfFile, File genotypesFile, String obs Assert.assertEquals(mr.getPopulationLikelihood(), llRandomSample, DELTA); Assert.assertEquals(mr.getLOD(), lodExpectedSample, DELTA); } + + + @Test(dataProvider = "checkFingerprintsVcfDataProvider") + public void testFingerprintVcf(File vcfFile, File genotypesFile, String observedSampleAlias, String expectedSampleAlias, + double llExpectedSample, double llRandomSample, double lodExpectedSample) throws IOException { + final FingerprintChecker fpChecker = new FingerprintChecker(SUBSETTED_HAPLOTYPE_DATABASE_FOR_TESTING); + Map fp1=fpChecker.fingerprintVcf(vcfFile); + + Assert.assertFalse(fp1.isEmpty()); + } + + + @Test(expectedExceptions = RuntimeException.class) + public void testTerminateOnBadFile(){ + final FingerprintChecker fpChecker = new FingerprintChecker(SUBSETTED_HAPLOTYPE_DATABASE_FOR_TESTING); + final File badSam= new File(TEST_DATA_DIR,"aligned_queryname_sorted.sam"); + fpChecker.fingerprintFiles(Collections.singletonList(badSam), 1, 1, TimeUnit.DAYS); + } + + @DataProvider(name = "checkFingerprintsSamDataProvider") + public Object[][] testCheckFingerprintsSamDataProvider() { + final File na12891_r1 = new File(TEST_DATA_DIR, "NA12891.over.fingerprints.r1.sam"); + final File na12891_r2 = new File(TEST_DATA_DIR, "NA12891.over.fingerprints.r2.sam"); + final File na12892_r1 = new File(TEST_DATA_DIR, "NA12892.over.fingerprints.r1.sam"); + final File na12892_r2 = new File(TEST_DATA_DIR, "NA12892.over.fingerprints.r1.sam"); + + final File na12891_noRg = new File(TEST_DATA_DIR, "NA12891.over.fingerprints.noRgTag.sam"); + + return new Object[][]{ + {na12891_r1, na12891_r2, true}, + {na12892_r1, na12892_r2, true}, + {na12892_r1, na12891_r2, false}, + {na12892_r1, na12891_noRg, false}, + {na12891_r1, na12891_noRg, true}, + }; + } + + @Test(dataProvider = "checkFingerprintsSamDataProvider") + public void testCheckFingerprints(File samFile1, File samFile2, boolean expectedMatch) { + + final String[] args = { + "EXPECT_ALL_GROUPS_TO_MATCH=true", + "LOD_THRESHOLD=-1", + "H=" + SUBSETTED_HAPLOTYPE_DATABASE_FOR_TESTING.getAbsolutePath(), + "I=" + samFile1.getAbsolutePath(), + "I=" + samFile2.getAbsolutePath(), + "VALIDATION_STRINGENCY=LENIENT", + "CROSSCHECK_BY=FILE", + }; + + Assert.assertEquals(new CrosscheckFingerprints().instanceMain(args), expectedMatch ? 0 : 1); + } } \ No newline at end of file diff --git a/src/test/java/picard/sam/FilterSamReadsTest.java b/src/test/java/picard/sam/FilterSamReadsTest.java index 71469c5ad..35e49b810 100644 --- a/src/test/java/picard/sam/FilterSamReadsTest.java +++ b/src/test/java/picard/sam/FilterSamReadsTest.java @@ -95,6 +95,8 @@ public void testPairedIntervalFilter(final String intervalFilename, final int ex // Build a sam file for testing final File inputSam = File.createTempFile("testSam", ".sam", TEST_DIR); inputSam.deleteOnExit(); + final File sortedSamIdx = new File(TEST_DIR, inputSam.getName() + ".idx"); + sortedSamIdx.deleteOnExit(); final SAMFileWriter writer = new SAMFileWriterFactory() .setCreateIndex(true).makeBAMWriter(builder.getHeader(), false, inputSam); diff --git a/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java b/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java index eda1476d5..9c42169a7 100644 --- a/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java +++ b/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java @@ -154,7 +154,7 @@ public void testEmptyUmis(List umis, List assignedUmi, final Lis tester.setExpectedAssignedUmis(assignedUmi).runTest(); } - @Test(dataProvider = "testBadUmiSetsDataProvider", expectedExceptions = PicardException.class) + @Test(dataProvider = "testBadUmiSetsDataProvider", expectedExceptions = {IllegalArgumentException.class, PicardException.class}) public void testBadUmis(List umis, List assignedUmi, final List isDuplicate, final int editDistanceToJoin) { UmiAwareMarkDuplicatesWithMateCigarTester tester = getTester(false); tester.addArg("MAX_EDIT_DISTANCE_TO_JOIN=" + editDistanceToJoin); diff --git a/src/test/java/picard/util/GraphUtilsTest.java b/src/test/java/picard/util/GraphUtilsTest.java new file mode 100644 index 000000000..d0e91c3de --- /dev/null +++ b/src/test/java/picard/util/GraphUtilsTest.java @@ -0,0 +1,76 @@ +package picard.util; + +; +import org.testng.annotations.Test; + +import java.util.Arrays; +import java.util.Collections; +import java.util.Map; +import java.util.stream.IntStream; + +import static org.testng.Assert.*; + +/** + * Created by farjoun on 11/2/16. + */ +public class GraphUtilsTest { + + @Test + public void simpleTest() { + GraphUtils.Graph graph = new GraphUtils.Graph<>(); + + graph.addEdge(5, 6); + graph.addEdge(5, 8); + graph.addEdge(7, 9); + graph.addEdge(7, 8); + + graph.addEdge(4, 2); + graph.addEdge(1, 2); + graph.addEdge(3, 1); + + Map clusters = graph.cluster(); + + // 9 nodes + assertEquals(clusters.size(), 9); + + Integer fivesCluster = clusters.get(5); + Arrays.asList(5, 6, 7, 8, 9).stream().forEach(i -> assertEquals(clusters.get(i), fivesCluster)); + + Integer foursCluster = clusters.get(4); + Arrays.asList(1, 2, 3, 4).stream().forEach(i -> assertEquals(clusters.get(i), foursCluster)); + + assertNotEquals(fivesCluster, foursCluster); + } + + @Test + public void secondTest() { + GraphUtils.Graph graph = new GraphUtils.Graph<>(); + + graph.addEdge(1, 3); + graph.addEdge(2, 3); + graph.addEdge(0, 2); + graph.addEdge(4, 3); + + graph.addEdge(5, 6); + graph.addEdge(7, 6); + graph.addNode(8); + + Map clusters = graph.cluster(); + + // 9 nodes + assertEquals(clusters.size(), 9); + + Integer threesCluster = clusters.get(3); + IntStream.range(0,5).forEach(i -> assertEquals(clusters.get(i), threesCluster)); + + Integer fivesCluster = clusters.get(5); + IntStream.range(5,8).forEach(i -> assertEquals(clusters.get(i), fivesCluster)); + + Integer eightsCluster = clusters.get(8); + Collections.singletonList(8).stream().forEach(i -> assertEquals(clusters.get(i), eightsCluster)); + + assertNotEquals(fivesCluster, threesCluster); + assertNotEquals(fivesCluster, eightsCluster); + assertNotEquals(eightsCluster, threesCluster); + } +} diff --git a/src/test/java/picard/vcf/SamTestUtils.java b/src/test/java/picard/vcf/SamTestUtils.java new file mode 100644 index 000000000..3fbef4cf0 --- /dev/null +++ b/src/test/java/picard/vcf/SamTestUtils.java @@ -0,0 +1,33 @@ +package picard.vcf; + +import htsjdk.samtools.SAMFileWriter; +import htsjdk.samtools.SAMFileWriterFactory; +import htsjdk.samtools.SamReader; +import htsjdk.samtools.SamReaderFactory; + +import java.io.File; +import java.io.IOException; + +public class SamTestUtils { + /** + * Useful test method. Creates a (temporary) indexed BAM so that we can store a sam in the testdata set. + * + * @param samFile the sam file to convert to bam and index + * @return File a (temporary) bam file (index file is created in same path). + */ + public static File createIndexedBam(final File samFile, final File tempFilePrefix) throws IOException { + final File output = File.createTempFile(tempFilePrefix.getAbsolutePath(), ".bam"); + output.deleteOnExit(); + final File indexFile = new File(output.getAbsolutePath() + ".bai"); + indexFile.deleteOnExit(); + + final SamReader in = SamReaderFactory.makeDefault().open(samFile); + SAMFileWriter out = new SAMFileWriterFactory().setCreateIndex(true).makeBAMWriter(in.getFileHeader(), true, output); + + in.iterator().stream().forEach(out::addAlignment); + out.close(); + in.close(); + + return output; + } +} diff --git a/testdata/picard/fingerprint/NA12891.over.fingerprints.noRgTag.sam b/testdata/picard/fingerprint/NA12891.over.fingerprints.noRgTag.sam new file 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SM:NA12891 LB:Pond-492101 PL:illumina PU:HJYFJCCXX160204.8.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HJYN2.1 SM:NA12891 LB:Pond-492101 PL:illumina PU:HJYN2CCXX160123.1.TATCCAGG CN:BI DT:2016-01-23T00:00:00-0500 PI:0 +@RG ID:HK35M.1 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.1.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.2 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.2.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.3 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.3.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.4 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.4.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.5 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.5.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.6 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.6.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.7 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.7.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35M.8 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35MCCXX160204.8.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35N.1 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35NCCXX160204.1.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK35N.2 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK35NCCXX160204.2.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.1 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.1.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.2 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.2.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.3 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.3.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.4 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.4.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.5 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.5.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.6 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.6.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.7 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.7.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HK3T5.8 SM:NA12891 LB:Pond-492101 PL:illumina PU:HK3T5CCXX160204.8.TATCCAGG CN:BI DT:2016-02-04T00:00:00-0500 +@RG ID:HM3G2.2 SM:NA12891 LB:Pond-492101 PL:illumina PU:HM3G2CCXX160308.2.TATCCAGG CN:BI DT:2016-03-08T00:00:00-0500 +@RG ID:HTL2K.5 SM:NA12891 LB:Pond-492101 PL:illumina PU:HTL2KCCXX160412.5.TATCCAGG-GAAGTGGA CN:BI DT:2016-04-12T00:00:00-0400 +@RG ID:HTL2K.6 SM:NA12891 LB:Pond-492101 PL:illumina PU:HTL2KCCXX160412.6.TATCCAGG-GAAGTGGA CN:BI DT:2016-04-12T00:00:00-0400 +@PG ID:GATK IndelRealigner VN:nightly-2015-07-31-g3c929b0 CL:knownAlleles=[(RodBinding name=knownAlleles source=/seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.dbsnp138.vcf), (RodBinding name=knownAlleles2 source=/seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.known_indels.vcf), (RodBinding name=knownAlleles3 source=/seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.variantEvalGoldStandard.vcf)] targetIntervals=/seq/picard_aggregation/G94982/NA12891/v5/1/NA12891.merged.intervals LODThresholdForCleaning=5.0 consensusDeterminationModel=USE_READS entropyThreshold=0.15 maxReadsInMemory=150000 maxIsizeForMovement=3000 maxPositionalMoveAllowed=200 maxConsensuses=30 maxReadsForConsensuses=120 maxReadsForRealignment=20000 noOriginalAlignmentTags=false nWayOut=null generate_nWayOut_md5s=false check_early=false noPGTag=false keepPGTags=false indelsFileForDebugging=null statisticsFileForDebugging=/seq/picard_aggregation/G94982/NA12891/v5/1/NA12891.indel.stats SNPsFileForDebugging=null +@PG ID:GATK PrintReads VN:nightly-2015-07-31-g3c929b0 CL:readGroup=null platform=null number=-1 sample_file=[] sample_name=[] simplify=false no_pg_tag=false +@PG ID:MarkDuplicates VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.10 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.11 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.12 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.13 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.14 VN:6bdf8d4fcdfd4e24b1bbb8ff20c87271864128b8 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HM3G2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HM3G2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.15 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTL2KCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTL2KCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.16 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTL2KCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTL2KCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.17 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.V +@PG ID:MarkDuplicates.18 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.U +@PG ID:MarkDuplicates.19 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.X +@PG ID:MarkDuplicates.1A VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.W +@PG ID:MarkDuplicates.1B VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.R +@PG ID:MarkDuplicates.1C VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Q +@PG ID:MarkDuplicates.1D VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.T +@PG ID:MarkDuplicates.1E VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.S +@PG ID:MarkDuplicates.1F VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.N +@PG ID:MarkDuplicates.1G VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.M +@PG ID:MarkDuplicates.1H VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.P +@PG ID:MarkDuplicates.1I VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.O +@PG ID:MarkDuplicates.1J VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.J +@PG ID:MarkDuplicates.1K VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.I +@PG ID:MarkDuplicates.1L VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.L +@PG ID:MarkDuplicates.1M VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.K +@PG ID:MarkDuplicates.1N VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.H +@PG ID:MarkDuplicates.1O VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates +@PG ID:MarkDuplicates.1P VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.16 +@PG ID:MarkDuplicates.1Q VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.14 +@PG ID:MarkDuplicates.1R VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.15 +@PG ID:MarkDuplicates.1S VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Z +@PG ID:MarkDuplicates.1T VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.12 +@PG ID:MarkDuplicates.1U VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.13 +@PG ID:MarkDuplicates.1V VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Y +@PG ID:MarkDuplicates.1W VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.10 +@PG ID:MarkDuplicates.1X VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.11 +@PG ID:MarkDuplicates.H VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.I VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.J VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.K VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.L VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYN2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HJYN2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.M VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.N VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.O VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.P VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.7 +@PG ID:MarkDuplicates.Q VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.8 +@PG ID:MarkDuplicates.R VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.S VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.9 +@PG ID:MarkDuplicates.T VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.U VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.A +@PG ID:MarkDuplicates.V VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.W VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.X VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.Y VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.D +@PG ID:MarkDuplicates.Z VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.E +@PG ID:bwamem VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.1 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.2 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.3 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.4 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.5 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.6 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.7 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.8 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.9 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.A VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.B VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.C VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.D VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 8 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.E VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.F VN:0.7.7-r441 CL:/seq/software/picard/1.1062/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@CO aggregation_version=5 +HM3G2CCXX160308:2:2121:20618:61116 99 1 14804625 60 151M = 14804863 389 CTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA >A>>??>=>?>==<===<===<<===<=====<===>==<<==<>==>>>>>>===>=>>>=>>>=>?>===>=>>>>=>==>?>=>>>==>>=>?>=>>>=>>>=>>>=???==??>???>>???>???>???>?????@@>@@?==;;> MC:Z:151M MD:Z:145A5 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKFFKKKFFKAKFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKFKKKKKKKKKKKKKKKKFFFKKKKKKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2121:20791:59868 1123 1 14804625 60 151M = 14804863 389 CTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGAGGAGAGATGGATAGATAGATGGCTGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA ;A;>4:>=>?>==<=><<;==<<;:+3:<==71;;>>=-7:=5:=7=,,,(45<49+6.5===(4*7(;9/--'27:*05<4*(<:8;<::8+*.1<**<<:78<=>,>:2>>>?35;?:=?=;=?;),-4;5;>;5-**5;'+?>><;<9 MC:Z:151M MD:Z:50T12G9A71A5 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z://A?@67?*@@7@??9./**=..2=>);:==?.1;6.810(<47.1(8.00>;?<>.%(;<6<=>5<<==8>2>=>><=>:=(>>0==:2=>><=:>><>>><=79><<=789=38<=<3=;<<><'7:?4:- MC:Z:151M MD:Z:0C5T29A114 PG:Z:MarkDuplicates.1K NM:i:3 MQ:i:60 OQ:Z:#########A7A,<,,FFF<??>>?>=>====<===<<===<=====<===>>==<>===7<<>>;>>=>-<=2<>'=<<.9=><9<>=>>>=07=;==>=;>>=>>==>?>=>>>>8>>8>>>;???>&4:=???<=>??????>???@>???@@@@@@@@18<:<< MC:Z:59S92M MD:Z:59A52A30A1A5 PG:Z:MarkDuplicates.1K NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFK7>6??>?????>???@??>=??>?>>6>>=>>===>=>>>=>>>==<>=>><=>>>>=>>=><>=>>>=>>>=>;>=>=;=>>>==>;<>=>====<====<===<==86===<==;<===<===>>>>=>?=>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A=>?>>>>>>>>>==>>=====>>>=>>====?>>>>>>>><===>=>>>>>>>>>>>>>>>>>>>;>><;><>?>>>>>>>>>=>?>=>>>>>>>=>??????=>>???7?=?????=???=8=?>./:=??:=<2=;/6:#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKFKKKKKKKKKKKKFKKFFKAFKKKKKKKKKKFKKKFKKKKKKKFKKKKKKKFKKKKK7AKFFFKKKKKAFKKA7FKF,7AAFKAF<7F<,?;>>>>(:>=<====<====1=;=='63:6<=<*:.=<9.=*0:0:2.=<==>>=.=>=>>2=.79>.=<<88>:/:<088<>.>>9/:20/:=>>>>06;<<>?=>;/8>=/?:*0370??=>>?;>=?################## MC:Z:45S106M MD:Z:28A89A15^AAGA17 PG:Z:MarkDuplicates.1R NM:i:6 MQ:i:60 OQ:Z:AFFFAKKKK,>9?<@2=>.1A*@@@=?<>558?:?94=>?;.*957:8>===:;)<>???>=7==;8>=;<>>=>>=>?>=>>>=<)7=>?=9:>7=>>7=>=3=>=;=>>><>>>><>>;<===<==5<===<==8<8=<<===<==8>?@8<= MC:Z:151M MD:Z:137A13 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:@>>=?>==>>><=====<===>==<<==<=<====<==<=<=<=>==>>>=>?>=>>>=>>>><>><=?>=>>>=>?>=>>>=>>>=>>>=>>>==>>=>=>>=>??>?>?>???>???>???>???>???>?@@=;## MC:Z:151M MD:Z:131A19 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKFKKKKKKKKKKKKKKKKKKKFKKFFKKF,>=?>?>>>>?>>>>>>>>>???>>>?>>?>>>>>>>><9=?>>>>>>>>>>>?>>>>>>>>>=>>>>??>7=>->=:<>??8<=><;?>>>?>>;=<<>@*<>>?@??=?<>@8;;@<.?@=?)((.?;?@@>@@@;>>/89#### MC:Z:151M MD:Z:124A5A17T2 PG:Z:MarkDuplicates.1T NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAFKKKKKFKKKKKFKKKKKFKKKKFKKKKKKK7FK,FFFAFKK7AFKAAKKKFKKFAFFAFK7AFFKKKKFKAFKA<?======<)1<>==<<==<=<=======<>;>=>;4<>>>=<>>=9<>>><>>=>?>=-5=;.;:;=<><>>>=>>>1>>>7=:?>???>??1<:???>???>>??;>?<>9@;>8@?<9=@9@@@?=@@5:A@@97?=9;;> MC:Z:151M MD:Z:13C111A25 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKK,>???>==<===>==<<>=<><==>>===>>=>=>>>=>>>=>?>=>>>=>>>>>>>=>?>=>>>=>>>=>?>>>??>???>???????>???>????>>??>@??>???>+A?@=1;>A06>;76> MC:Z:151M MD:Z:112A9A17T10 PG:Z:MarkDuplicates.1P NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKFFFKAFKKFKKKKKKK,AFF;??>:=;=====<:====;<=<<7*)01<6:==<%<:*<2=:<=:)072<<;=<;;;><=>>9;=<=>?=<<:====*6<=<<289<=>><>8/6=>>>0;>>=/*5><>:?=*:0*;<=9<>>??;>@??@??<<0++>=@?<=-;# MC:Z:22S129M MD:Z:37A48A32A31 PG:Z:MarkDuplicates.1P NM:i:3 MQ:i:60 OQ:Z:AAF)-.*:=8997.=>-6::?=?=6.?=9<@?>?89<@>??@??>????@<=>???=>?8=:?>>>?>>>?>>>?>>;?>>>?>>>?>>>?>>>?<>:>>>>>>>>?>???==< MC:Z:151M MD:Z:12C9T128 PG:Z:MarkDuplicates.1H NM:i:2 MQ:i:60 OQ:Z:####################A7,FA<=?>>==<:=;<=<====<==<=<=<===<=>><=?>=>>>=>>>><>>9=?>=>>>=>>>;=>>>=;=>=<>>=>>>9>>><41<=>???>??=3:>?>>>?>???>???3>?@>???;<>@9/<-;1<<:9@@=##### MC:Z:151M MD:Z:116A13A20 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKFFAKKKKKKKAKKKKKKFKKKKKKKFFKKKKKKKKKKKFKKAFKKKKKKKKKKFAKKKKKKKFFFFFKKKKKKAKKKF<7FFKKKKKKKF7AFKKFFFKKKKFKKK7FFFKKKKAAAK<,<,<,<<<7==>?>>>=>===<==<=<=<===<><====>=>>><>>>><<<=>?>>>>>=4<=>=?>=>>>=>>>=>>>=>>>=>>>=>>>>=>>>=>>>=>>>=>>?>???>???>???>???>???>???>:;:>7;:????@<9-=:;? MC:Z:151M MD:Z:114A36 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKFKKKKKKKKKKKKFKKFFKKKKKKKKKKFFFKKKKFFKKK7FFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKF6%96)>=7:;)(7-19+7>=6-19+:=8+-9><>>;:<9,+?<>>89:?<=:>8>:>>>=?>>:==>=:?>>:?>>>?>>>?>>>?=>>8=9>?>==?===>===>=======>>>>?>>>>>@??<8+9A?@@>@=8:?@8@2=*1=?1>>>8?>>)=>?)9<70<==8?=>?<>=9?<:&=1>=7=>=8=>><:>>>=><)9;>>>9>>;=>>>=>>>=>>>=>>;=>>=>>>>====<==7<<#;2&==<====<==<=>=??====/?=:/-0<99=4/.<>?<<>??@@;;<=???<>>@=??@??==:?>>>?>>=?>>>?>>>?>>>?;>>?>>>?>>>?>>>?>>>>>>>>>>>?>>>?>?>=?>>=;= MC:Z:151M MD:Z:0T10T139 PG:Z:MarkDuplicates.1L NM:i:2 MQ:i:60 OQ:Z:############A<?>>=>=>>=====<=<=<===<===<=>=<===<======>==?>=>>>=>>>:=?>=>>=<>=>=>>><>=>=>>>=>>>>=>=>=>>>=>>>=>>>=>>>==>==???=??>==>>>?????=??>?>98(/7@@>>>;;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKFFKFKKKKKFKAFKKKKKKKKKKKFKFKKKKKKKKKKKKKKKFFKKFKKKFKKFFFFFKKKKKAFAFFAFKFFA<7,,AFFAFAFK< UQ:i:0 AS:i:151 +HK35NCCXX160204:2:2209:29579:59235 147 1 14804663 60 151M = 14804553 -261 GGCTGAGATGGGTGGGGAGGTGGATGGATAGATGGATGGGTGGATAGATGGATGGGTAGAAGGGAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATA ############################################################=(8'=1=+-<=+>8(,-<2++>;6+-<=:>>>9?1>:>(9+-('5?>>>?8=:-(5>;418?>>>>>>>><>==>>>?>?>>>>??=>.=< MC:Z:151M MD:Z:1A13A3A35A7A43A43 PG:Z:MarkDuplicates.17 NM:i:6 MQ:i:60 OQ:Z:############################################################A,A,A7F,,FF,FA,,,F7,,F@>??>>>=>=><===<===<=>=<===<=======<=>=<====>=>=>?>=>>>=>>>=>>>=>>>=>>>=>>>>=>>>=>>>=>>>=>>>:>>>=>>=>>>>=>>>=???>????=>?>>???>??>?=?=???>@@@??A@>>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKFFKKFFKKKKKKFFFFKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2106:16315:24515 163 1 14804672 60 151M = 14804871 350 GGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGG =;<>>>====:>==<===<=>=<====>==>>=>=>?>=>>>;>>><->;=>>><=;>=>>><>>>=>>>=><>>=>>>=>>>=>??>?;?>>??;>??>>?<??=9/9<@.:>>?@@9.-/--**A/:=:/-;??@5><:: MC:Z:151M MD:Z:98A52 PG:Z:MarkDuplicates.1M NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF,FFKKKKFAFKKKKKFKKKKKKKKKAKKKKKKKKKKKKKKKKFKKFKK?;?>?=>>>=>==<=>=<===<=======<=>=<===<===<=?><>>>=>>>=>>>=>>>=>>>=>>>>=>=>=>><<>>>=>>>=>>>=>>=>>>>=>>>=>>>=>><>8>?>=>5<=>=>?@?@???>???>?>>?@@=?@@?<8?<><===<=>=<===<=======<=>=<==>;>>>=>?>=>>><<>==<>>=>>>=>>>=><>>=>>>=>><=>>>=>>>=>>><:>>>??=:???6=?>=??>?/-)4.==?>?><.(.(/--9@>@?82<5=?@==@@?@><9:= MC:Z:151M MD:Z:91A59 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFFKFKFKKKKKKKKKKKKFKKKKKKKKKAFKKKKKKKKKKKFFKKKKKFAKKK=>??>>>>==<<==7;59======<=;=<===<===<=>=<==5<==>:<4=)2;==>><=6<<>=>>53<==:=>>=699<>>5=<>=>>2<=>><=:><:=>>>=>>=/-<>>?=>???>?=?>3?-*<569==??>>>>=>?=<===<=======<=>=<===<===<=>=<==><=<>=>>><>>;=>>>=<>>>=>>>=>>>=>>>=>>>=>>>=>>==>>>=>>>=>>>=>>>>>>>>??5<>??>?@?@???>???>);?>????@@@>@@?==;## MC:Z:151M MD:Z:131T19 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AA>>><;?7;5=>>>>>>>?>>;?==>>>>>==>>??>>?>==>==>?>=>>>>>????=;< MC:Z:151M MD:Z:6T7T2A4T6A15A31A68 PG:Z:MarkDuplicates.1D NM:i:7 MQ:i:60 OQ:Z:###################################AAF7A7<,AAAA<7A,FAA,7,,,,,AA,?=>?>>>7>>?>>>>>>>>>>??=??>>>?>>>??>>??>>?>?=>??8>>=>>?9>>:5=><=>>??=>>>>>>?>>.==>??>>9?>>698(.=8><9<,69=?6>>:6,==::>.?@5=.65.7:>@<78<.??9-;>8/<8## MC:Z:151M MD:Z:72A76T1 PG:Z:MarkDuplicates.1H NM:i:2 MQ:i:60 OQ:Z:AAFFFFKKAFFKFFKKKKKKKKKKFKKKFFKKKAKKFKKKKKKKKKFKFKKKAFFFKKKAKF<<=>>?>>>??>>>>>>>>>>??>>?==>?>>>?>>>?>>>?>>>>>?>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>=>>><>???@???>?@?????????@@??@???@???@???A@@@A@?@A@@@?@@?>;:8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKFKKKKKFFKKKFAKF UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1204:6066:67340 147 1 14804699 60 33S118M = 14804209 -608 GGAGAGGGGTGGGGGGAGGGATGGGTAGGTGGGTGGGTGGGTAGATGGATGGATAGGAGGAAGGAAGGAAGGAAGGAAAAGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAA #######################################################81>95.089.0(99<81.092;6.:8/$3=<&>=6<<=.>>=;<>=>>>=;>>=;>><-0>=>>>><===:8======<;=;====;<=><=>=<= MC:Z:151M MD:Z:7A15A25A3A17A46 PG:Z:MarkDuplicates.1P NM:i:5 MQ:i:60 OQ:Z:#######################################################A7AA<,,AA,,,A<1.<4:/1=1.0+9-/10.<<<:/8=.<8=:><><><>>>8>;0<>=>>>====>>>?>>>>>=>>>>>===>>>>>>??<<<; MC:Z:151M MD:Z:7T11T50A58 PG:Z:MarkDuplicates.1R NM:i:3 MQ:i:60 OQ:Z:##################################################A<,7A<<7A<,177>760=8=/>;>>?>=:>>=9><8=;>=>><<<<;9.<7:=>>=>>;>=<>=>?>;>>>=>>>=>?>=>>>====<===<===<==<====<==<=====?>?=:= MC:Z:151M MD:Z:1T11T3T133 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:###############################A,77A/<=====<=>=7:==<8;5<0;;797;<<:>9>>&2=>>=9>>>5>>>8<<>=>>>=>>=;<;:<>>>0<>>4=>,<.57):=;>2;4*.(70==?=.-9>7@?>3?,*):,)),,*1@?<3;=<#################### MC:Z:151M MD:Z:40A33A76 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AA,>=>>><=?=<>==<===<=======>===>====<==>=>>>=>>>=>>>=>>>=>>=>>>>=>>>=>>>=>>>>/>=>>>>>=>>=>?>?>>>=>>>=>>?>?<>????>???>???>??>@>@;@?@@<@@@@@?@0?6;6> MC:Z:2S149M MD:Z:151 PG:Z:MarkDuplicates.1J NM:i:0 MQ:i:60 OQ:Z:<<=<===<===;===;<;<<====>>>;<<>>=>>=<>>><>>><>>>=<9><>><9>>>=;<53>=<504<<.:;<39;==8/;/,>><<<>=7=:;??>???>???>???>9?9<>@;+/>55=>04:8;8 MC:Z:151M MD:Z:62A88 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFA,FKKF,AAKKKKKKKKKKFKKFFFAFKKKKKKKKAFFKKKKKFFKKKFKKKFKKKKFAKFKKFAKKKKFF77KFA7,7AF,AAA7AAKFA,F,,FKAAAKAAAAAKKFKKKKKKKFFKKK725=6:,@=:,>9><8=>4@<=;?894?=????=>>?<=<>=8>>4>>>>>>>>>??>>?>>>?>>>?>>>?<>>?>>>?>>>>>>>>?>>>>>>:>>>?>??=<=< MC:Z:151M MD:Z:2T3T6A24A18A93 PG:Z:MarkDuplicates.1F NM:i:5 MQ:i:60 OQ:Z:#######################################A<<,A<77<><>?>.8=7><8=<;=8=>9=9=>?><>?<>>?<>=?>=-(4>>?:6>9/<>=8>>?>=-5>>6907>>>>>?=<<,<,>>>=>>>.<>??>?>?=@???@?.-=8->@=<:>?:;?:8??A@@'<;@@?########## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 NM:i:0 MQ:i:60 OQ:Z:?>>>?>=>>>====<===<====<===7<==<===<===<====>=<<>>>=>>>=>>>=>>>>>>=<7>>>=>>=>?>?>>>=>>>=>?>=>>>=>>>=>>>=>>>=>?>????>??>>?????>??@>?>??>??@?@@>@@?=;0>===>>>>>=>>===>>>==>=>=>==>>>>>>>>>===>9>>>>>>>>>>>>>>>>>>>>>>>:=<>>>>>>=?=?>>>>>>>>>>>>>>>>>>>????????????>????;??????;????@8????=?@@@@@>>.:??>3<9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U NM:i:0 MQ:i:60 OQ:Z:AAFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKK>>??>=<===<===<=>=======>==<>>>=>>>=>>>=>>=>>>>=>>>=>>=<>>>>7><0.:=>>>=9.9/.<>=>.>=0.;????????>????>???>??0@:@??@@?/?:>?@@;@/07'2>AA@@A@A############ MC:Z:151M MD:Z:149T1 PG:Z:MarkDuplicates.1P NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAFKKK7FF,,AFKFKF7,7,,AFFK,FF,,@>?@@?299A1:<@:)??=>???>??=>???>???>???>??;/;>;=<%)>:=>=>?>?>::9>>;9>;<<,>7=<>69;179=<0,>=9/=<&4+;0.;==<;<==:<<8<15=<5)9=)=7<2;/3?=?:>= MC:Z:151M MD:Z:43A21T22A14G6G1A38 PG:Z:MarkDuplicates.1Q NM:i:6 MQ:i:60 OQ:Z:FAA7>:97:8<5@;>;;98;;>):6>8,;=9>;=)=:?9=5@58688?@<9>>>?>;<>>>?>>>>>>>?<>>>>>>?>>>>>>>>>>>>?>>>>>?>>>>?>>>=>>>8>>>=>>=>?>>;>=:< MC:Z:151M MD:Z:99G51 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:#########A<>@?<<<>5-:2?>>8(&;;<5@<<>=(>>?<<5?<9>?<>8>>>>;<:=<=;>>><=>=<>?>>=9=>>8>7>>>>>>?>?>>=;< MC:Z:151M MD:Z:0A13A6A4A2A10A0A0A2A7A27A69 PG:Z:MarkDuplicates.1W NM:i:11 MQ:i:60 OQ:Z:###############################################################KKKKKFAAF7,<7KFFA,,A8?9>7?4(7?=>??=>???>>?>=>>>=>>><:=>=>><7=>>=>?><>>>=>>>=>?>=>>;==>>=>>3=>>>=>==>>>>=:=<====<=<==>=====<===<==<>=====<>?>>>@?=:?> MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1J NM:i:1 MQ:i:60 OQ:Z:#######A77,7A?@96/.)6=?=??=???@?>?????>@@??@?>>>?>>>?>>>?>>;?82>;=>8;?>>>>>?>=>>?>>>>>>?>>;>>>>>??>>?@@<:=< MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1T NM:i:1 MQ:i:60 OQ:Z:############################A,<7FAA,,:;3;.63,.=>::?>?@=:+?9>9????@??><<=+;<=5>?>>>>>>>>>>?>>>?>?>>>>>>>=>>?=>?;=:?>>><>>:?>>>=>>>?>>>>>:<;=>>>>>?=<:>?>==>>>?>>>=>>>>??>>???>>>?>?>;? MC:Z:151M MD:Z:9^AAAA24A117 PG:Z:MarkDuplicates.17 NM:i:5 MQ:i:60 OQ:Z:F7?=>???>>>>>?>>?>>>?>>>?>=>?>>>?>>>?>>>?>>>?>>>?>=>?>>>>>>==>>>?>>>?>?>>>>><>>>??>>?>>>>><>?>>>@>>>@>>?@?=>?????=>?><<>?>??@??????@?@@@@@@??=?8A@@>89:? MC:Z:151M MD:Z:36A114 PG:Z:MarkDuplicates.19 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFKKKKKKKKFKKKKKKFKFKKKKKKKKKKKAKKKKKKKKKKKFKKKFFKKKKKFFKFAAFKKKKKKKKKKKKFFFKKKKFAAA->=>7><7+>=>=>>>=>>=><>>=>:=>2>>=>=>>?>>>>>=>>>=>=<>>=<==:=>=>=>====><>>?=?>>= MC:Z:151M MD:Z:10A11A0A3A1A1A3A2A4A6A100 PG:Z:MarkDuplicates.1N NM:i:10 MQ:i:60 OQ:Z:################################################A<,FKFA,AA,,7,F,KKF7KF7,FKA,AKAFFKA2>0(2@@>=8A9(?@'2@0)'.>6;?=((><':;.('><971>89;,0869'%>;=?>:>;>=::>;>9><;23>43=;8=>>:=<<;<:7>7;8<=9==7=<==>=:===<==+;==<===<==<=>=<=>===>><>>?=?>@> MC:Z:151M MD:Z:29A121 PG:Z:MarkDuplicates.1M NM:i:1 MQ:i:60 OQ:Z:#FAA<7<,,7AFFA7AA,A<,7A,,,,F020*02)*0<9=0>4:027=8><<8*>=>67>=><:/(='>(;==>>=>8><>>>=>>9===*=>>>=>>=>>>><>>=>>>>=>=>=?>=<==<=6=<==<===<==<=>=<=>==<==<=>>=>>>???<=> MC:Z:151M MD:Z:5A1G16A17T108 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z:########F,7AA,AAF,,7,,,,,,7AF,<92=>=9:0=:<;8=.><=>>>>=>>=>:;.><>=>>>=>7==>>>=>>>=>>>=>>>=>>=>>>>=>>=>>>>=>=>>?>====<===<==<===<==<=>=<=>==<==<===<===>>>>>??>>? MC:Z:151M MD:Z:10A9A130 PG:Z:MarkDuplicates.1P NM:i:2 MQ:i:60 OQ:Z:###################AA@8;:=97==?;+>:???==<<,:9>@;??>:??@?>>?<>?@>>>?>>>>>>>>>..<>>;<>>>?>>>>>>?>>>>>>>>>?>>>??>>>>>>>>>==>>>?>>??==<< MC:Z:151M MD:Z:5A4G8A131 PG:Z:MarkDuplicates.1X NM:i:3 MQ:i:60 OQ:Z:#######################################FF7AAF7=?>?>>>?<>>?>><0<>=?/77>1>>66'8==/8>?>>(-,=,(08,8'<,>,:,5'-('&:-(':8(,,>=-<;@??:8=/=?1,7?887988@@=>.=>6################################## MC:Z:7S144M MD:Z:4A13A29T13G1A3A9G48G17T5 PG:Z:MarkDuplicates.1T NM:i:9 MQ:i:60 OQ:Z:AAF,,FFFFKKKKKFKKKKFA7FFFK77AKK7F7KK7A(7FF7AFKKK,,,F,,77,A,A,F,A,<,,,,(<,,,77,,,FF,A>??980>*>???>???>>>8<8/8*2*?>=>>=:?><><>=>>>=:42==1>=>>>=>>>=>>>===<<>=>=>>=>>>>=>=>>?>>>>><=>=<==<===<==<=>=<=>==<==<===<====>>>=>????<=> MC:Z:151M MD:Z:17A2G14T3T111 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z:?>=8:==;;5>>7=(?9<=???>??>==>>=>>>=>><9>>;=<==>=>>=>>9>;>>=>=>>?>>>>>=>>>=>>==>>=>=<=>=<=>=#<==<===<=======<=????;<= MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:#####AA<7A77<,,<<,F7(.070.0(8.-<930'<'.<7/1>;,=<>4.><6-<<<<>61;-+=;;6-<><78/;->><9/7=====>==<>=<>=><<>;=>>:=7< SA:Z:9,28189608,-,17S8M1I29M1I34M61S,1,5; MC:Z:151M MD:Z:14A4A4A18A48 PG:Z:MarkDuplicates.1K NM:i:4 MQ:i:60 OQ:Z:########################################################A7,AA,,,A7,,,A,,FA7,,F,,FA,7KF,AFKA,KF7,FFFAKA>>>=>=<>===<===7>======>>=>7>>>>>>>=>?>?>>>=>>>=>?>>>>>=>>>>>>>;8>>;<<<>><>>>>==??>??>?8,6>:??>???>??????>?>>?=@;@<=:><<@@@@??/9?=5=@??>>/>?/<6=)078< MC:Z:151M MD:Z:146T4 PG:Z:MarkDuplicates.1K NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFAFFKKKKKKKKK7FKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKAAKKAAFAKKFKFKKKKKKKKKKK7,AFFKKKKKKKFKFFKKKFAFAAAAA=>?>?>>=>>><===<===<=======<====<==<=>=>====>=>=>?>=>>>=>>>=>>>=>>>=>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=?@?>?@??=?>>>??>???????>?@??=-@?>=;:< MC:Z:151M MD:Z:7A143 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKFKKKKKKKKFKKKKKK<,AFFAKKKKKKF UQ:i:42 AS:i:146 +HK35MCCXX160204:8:2122:1479:33973 83 1 14804764 60 17S134M = 14804569 -329 GAAGAAAGAGAGGAAGGAGGAAGAAAAGAAGGAAGGAAGGGTGGGTGGGAGGAAATATGGATGGATAGAAGGAAGGAAGGAAAGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGAT #############################################<&87.8.++6+9;>=:64<87>8+?>>;?:=+.);+<.==>(===7=::8+8>?>=9>>?9<5>>:=7:9>=99>4=>>>>??>>>>>>>>>>>>>??=<>> MC:Z:114M37S MD:Z:9G17A8T28G68 PG:Z:MarkDuplicates.1D NM:i:4 MQ:i:60 OQ:Z:#############################################A(AA,A7,,7,A?,/)?7:)-.>7>,>><@9>-@=;?@???@?=?@?>>?????>@?>8;>>8(>>?>>>>>>?>>>>>>><=>>>=??>>>>>><>>>>===>>>>>>><>>>>?<;>>>>>8=<>< MC:Z:151M MD:Z:3A12A18T115 PG:Z:MarkDuplicates.19 NM:i:3 MQ:i:60 OQ:Z:#################F<9>??@>>>?>>>?>>>?>>>>>>>>>>>?>>>?>?=>>>>>>>>??>>?>>>?>>>?>>>?>=>?>>>?>>>>>>>>?>>>>>?>>>>?>>>>>>?>???>>;>?@>?@@@?=????>?????9;>==?@???@<@@A>@;7:@?78<08 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:A>>>>=>=>>>=>>=====<:======<=?=>;>>=>>1==>>>=>>>=>>>=>><<<>=-76<;>>=6>>>>>=>>?>>>>>=>>>=>>->>5;88==?=??>?>=?????????7,==,)=?@@6;,==??>>>>=>>=<=======<====<==<=>=>===<===<=>>==>>=>=>=>>>=>>>=>>=>>=>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>?=??><>?>???????>?@????>???>9?@;<88@=>;;? MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKFFFKKKFKKKFKKKAFKKKKKKKKFKKKKKKKKKKFA7AK>>?>>>>>>>>>>>?>==>=>>>>>>=>>>??>=>==>?>>>?<>>?>>>?>>>>>>=>>>>>?65>>>?6>6>=><=<>>?>>96>><=@@??=>@???08<=8>??7?<>=?.?>>>?>=>>>>========<==<=>=>===<===<=>=<===<>>==>>=>>>>=>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>??>???????>?@??>=>????????>>;@?@=@@?>=:;? MC:Z:151M MD:Z:50G100 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAAKKKKKKKKKKKKKKFFKKKKKFKK UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:2220:16417:29226 99 1 14804777 60 151M = 14804877 251 GGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGG ?<>???=>>>>===<====<==<=>=>===<===<=>><>==<>>=<===<>>>=>>=>>>>=>>=>>>><>=>>?>>>>>=>>>=>>=>>>=>>>>?>>>?>>:>>>???>???????>?@????>????????>?;@?@A@@>@>;;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFAFKKKKK UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:1224:26311:55227 99 1 14804780 60 151M = 14804984 355 AGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAG =>=???>>>>>===>=<==<=>=>===<===<=>><>>=====<====>>>>>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>>>>=>?>=>?>>>>>=>>?>?????>>>?@>???>????????>>:?>@@@@>@>@@><9:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKK.>=>8<6>+?>>?>>>?8<=?>>>?>>>?>>>?>>>>=<>=?>>>>>?>9=>>======>========>?>=>??=>?=>>?? MC:Z:151M MD:Z:107 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:#############################################################A?>>>==>>====<==<=>>>==>==>==>?>=>>>=>>>=>>>=>>>=>>=>>>>=>>==>>>8>=>>?=>==>=>>>=??=???>?>9>@?:>@?????>??>>??@?>?8?@.::?@@@>:<@A==7;8? MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1K NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAKKKKKKKKFKKKKKKKKKKKKKKFAFKKFAKKKKKKKKKFKFKFKAFAA<7AF,<7AKKK<7AAKAAF(7A7,,=@7@6?@>>??<>???>??:=?>>=>>>=>=;<>><=>>>=<4=>>>>=>=>>?>>>5>=>>>=>>=>>>=>>=>?=<=;>=<==<>==<=======<=>====<====<===<=8=<====<>>=>>>?>?:@> MC:Z:151M MD:Z:6T144 PG:Z:MarkDuplicates.1M NM:i:1 MQ:i:60 OQ:Z:##AA<<,KAF,AAKKFFF7F7KAFKKAFKAFKKKFFFFKKKKKKKKFFFKKFAKKKKF7KKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:11 AS:i:146 +HM3G2CCXX160308:2:2203:13088:33691 99 1 14804784 60 151M = 14805169 536 AGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGCTGGGTGGATGGCAGTTTT >?>?>?>=>>>>===<=>=>===3===<=>=<===<===<===<>>=<>><>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>>=>>>=:=6::>?>>@):??>????>>??;<:?:??=??-;<?>>?>>>?>?>=>><>>>>39>>=>7<5;>>=>>:?>>=?>>>?>><>>>>>?>>>>>?>>???????;:=??????-=?@>=<@@<-9@<))-<:8@=%2>??;9>3:9### MC:Z:151M MD:Z:144T6 PG:Z:MarkDuplicates.1V NM:i:1 MQ:i:60 OQ:Z:A?>>===<===<=>=<===<===<===<===<==<====<=>==>>><>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>>>=>>>>>>>>>?>>>>>?>??<>9?>????9??>????@@@<@@@@?=?;;=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKFKKFFKKKKFKKAAKKKKFKKKKKK7FKAFKKKFKK<@;??>@@;??=>@??>???>??;<91=>?<>=;??;9<>=7<>:>>=>>>=>>==>>=>>;>;>9>?>>=;>=>>>=>><>>>>=>?>=>;=<=>>=>>=<=8=<====<==<======<=====<>?>?<;= MC:Z:151M MD:Z:9T141 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:FFFF?>>?@>?>>>====<=>=<===<===<<==<===<==<====<>><=>>><>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>><>>><=>>>>>>:>?>>>>=>>??????>>:?:>>?????;??????>?@@@@?>@?21;8;; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKFKAKKKKKKKKKKKKKKKKKKKAFFKKKKKAFKKKKKAAFKKKKKKK,,<=>=?@>>>=>>=<=>=<===<===<===<===<==<====<=====>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>>>=>>>>>>>=>?>>>>=>>>>????>>:?>??>>>??>??????>????@??@>@@?==::? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKFFKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1219:25317:10433 99 1 14804800 60 151M = 14804836 187 TATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCA >;>=??>=>>>==>=<===<===<===<===<==<====<==<<>>=>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>>=>>>=>>>>>>>=>?>>>>=>>>>>>??>>:?>?>??;>?>????????????>?@?@?@??=<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK?@>@@?:>4@@??@;@??>????????>>??>>>?>>>>>>>?>>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>???;;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F NM:i:0 MQ:i:60 OQ:Z:###FAF??=<===<===<===<===<==<====):==:>>>>=<>>?=>=>>=>>>=>>=>>>=>><>?>==4:<<>=<>>>==>><>>>=>??><8=>???,095>7>?>=<=>@9=;*5;8@1.:655+<>=@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKK,%$3>6(9,6%$+75&#<-:'((/<(;,9>=>9############################################################################################## MC:Z:151M MD:Z:8A8G12G0A4A2T4A1A11A0T5T1T2A7G17 PG:Z:MarkDuplicates.1N NM:i:14 MQ:i:60 OQ:Z:AAF<,,,F,,=?>>9=>=>>>>>>;>>><>>=>>>=====>>>>>>>>>>?>=>=<>>>8>>>>>>>>><9??>>?6>>>>>=>:<;>>>=.=>><>>>>=>>>><,>><,:=?';&??2>)>96=8.:+))/.8:= MC:Z:4S147M MD:Z:151 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:<@<>>?>>=>>><===<===<==<====<=<<<=====<2=><==>==>>>=>>=>>>=>>==?>=>?>>>=>=>>==>>>>><>=>?<>>;==>>>=>>>==8<=>>>-=<<=?>????0;/>==8;?>@@??.?*9=:;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKFKKK7FKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKAKKKKKKAKKKKFKKAKFKKKAFFKKKFFKKKF,FAAFKFKKKK,<,AAAA@?@A@?@@>=9@6>@);/-??6);0>(<-?=>>??>>>)7'><5)>>=>>=>2>=>>><>>>=<>;=>>=>=<)>=<9>=>1>>=>>=>>>>>><9====<;=====<=<=========<=>>??;<= MC:Z:151M MD:Z:27T36T86 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:#A,A<7,<9;12>?=@????=>>:;<6>?>?>??@=9/<>:<9?>>>=>>>=-7==>?>>=8>=>>>=>>>>>>>=><>>:;<=8>>=>>>=<9>=>>>>=>>=>>>=>><=====<==<===<=<===<==<==<==<====>>>>>>?>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:<7FA,,FFFAFAAKFKAAA<7AKKKKKKKF<,AFAAAKKFFKKFKF,7KAKKKKKKKKAKKKKKKKKKKKKKKKFKF<>??===<====<==<<=====<==><=<==<>>>=>>=>>>=>>=>?>=>?>>>>>=>>7=>>>>>>>=>?>>>>=>>>>>>>>==9>=??????>:=<>=???=????>>??>>8??>@=@@?@??:@@??=@?@=<=<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@9?@@@@<820?9???>?>???>?1*9?=>>?75@?>?@??>??>?>>=>>>>>>>=><>>><=><=>95):=>9>=>>>>=>>=>>>>>>=>>>>>=>><>>><=<=========<==<===<=====<=>??>=:= MC:Z:151M MD:Z:4G146 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:A>>=(>?>??=>2?>??>??<=?>:??>>=>>=>>>=>>>>>>>=>?>>>>=>>>>=>>>=>9><>>>>=>>=>>>>>>=>>>>>=>=>>==<=<=========<==<===<=====<===>=>>==>??=>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKKKA,>>>>?>>>>>?>>>>?>>>>>>?>>>>>>>>??>>???>;>>>>>>>>>>>>?>>>??>??>??87=>>=>::??????,=<,<@=?@>>;@?@@?9>//*(9(:?@BA=*/:<<;<9 MC:Z:151M MD:Z:133T17 PG:Z:MarkDuplicates.1T NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKFKKKKKKKKKKKKFKKAAFFFFFFKKKKKKK,FFFKKKKKFA,AAKAFFFF7,AFK<<,AKKFAFK==:.89=94=>@??<@?>>?<>><<3=>9:,$84;;><;6<0;<9<8?>>>=<(9+(64=<<8=:7;9>>>>>>>>4*>>>=>=;>5(,>>>>16=9>9@?>;>< MC:Z:151M MD:Z:8A8C133 PG:Z:MarkDuplicates.1A NM:i:2 MQ:i:60 OQ:Z:#########################################FAA7FFF<,AAA<7AFKKKAKKFFKFFFFF?@?A@9>=@@;@?@@@?@@@>??>???>??>?@?>?@??>??>???>???????=>?>>>>=>>>>=>;<=>9>=>>>>=>>=>>>>>>=>>>>>=>>>>>>=>=>>>>>>>==<==<===<=====<====<==<<==>@?><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKAAKAFAKKAAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1211:14346:10697 163 1 14804838 60 151M = 14805276 589 GATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGCATGAAAAATCACAGAGGCCCCTATTTTGG ;<=>??>>>=>=8>>>=><>>>>99>>>>>><9=>>->>>>>>;>>>>>>=>>9>>>>=<>;6<)<;<>>.2>=><:7=;;=:>*3?=73>9*...>9;0&>8@.<@@?=(7????@??;>':/>A;;??94@>AA0;>'$$$1A@?::## MC:Z:151M MD:Z:121A17T1A8T0 PG:Z:MarkDuplicates.1R NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKFKK7FKKKKAFFFKA7FKFFFFKFFKK,FKKFKKAFKFFKKKKK7FKKKKAF<7A,A??@?@??>=?@?>>?=>??8?9?>?=??>???????>??>>>>=>>>>=>>>==5;=>>;>=>>=>>>>>>=>>>>;<>>>>>>=>=>>>>>>>>><==<===<=====<====<==<<===>>?>>;8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:<77FA7FA7,7KKFFAKFKKFFFKKKKFKFKKK@9/?=0+?;.:>>7?:=<>>.=>???>?@??>??=.8>=>>>>>>>=>?>>;><>>>>=>>>=;9>=>>>>=>>=>>>>>>:>>>>>=>>>>>>=>==========<==<===<=====<====<==<<===>==>>>=???==? MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1P NM:i:1 MQ:i:60 OQ:Z:#FAAAKF7,FA,,?>>>>==>=>=>><>>>=>>>??>>??>>>>>=>>>=>>>>>>>=>?>>>>=>>>>>>>>=>9>=>>?=>>=>>?????=(:?=?>?>?@:=??>???????>????>@??@@>>=@@@<@@?@@???9A-?->A@@@@>9:8; MC:Z:151M MD:Z:87T63 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKFKKKKKKKF,AKFKKKFKKAFFKKKKKKKKKFKFKKKFKKFFAA=?>3/1(;<&(;85>>4.).;'>>77.<00.90(5/;01.7(9>><8:===>9>>>>>><=><:-7-:.8>>=>>?<>=/; MC:Z:134M4D17M MD:Z:7C35A18G43 PG:Z:MarkDuplicates.1R NM:i:3 MQ:i:60 OQ:Z:#####################################################AA<7A7K5?<>>=>878>>==7;;>518=<9;=;>>>>9=<:>====>9<:><7>>>9<,,0(.715<9,04-0;<-;)7;7.:->/;:7>><=><>::>???6=8)/:<:?5<<;?;>>)<'.:=9866=<@@?==?:;6-:9?>;;9<:## MC:Z:151M MD:Z:67G83 PG:Z:MarkDuplicates.1U NM:i:1 MQ:i:60 OQ:Z:AAAFFFKFFAAFKKKKAFAF<7);-.)@=8),7.),@??>=:<.4:??959????@?>>:=5>??>>>8);9=>>>8)>>)1=';/>?>>>>><5=9;=<>>>=<=<:956-1>>>>=<>>>?>>=,=>>=7>>>>>>=>>>?>>>???=;> MC:Z:151M MD:Z:74T50G25 PG:Z:MarkDuplicates.19 NM:i:2 MQ:i:60 OQ:Z:###FAKA,??>???>???????>?@>>=>=>>>>==><=09>=><>>=>>=>;<(>>;>>=>>=>>>=<*9>>>>=>>>=>>=>>=======<====<==:<===>=====<==<===<=>>?>>=>??=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:##KKKAKKAA7F7F,KKFA>?><==<=>=<=>=====<===<========>?>>>>=>>>><>>>==9>;=>>>>>>=>>>>>>>=><>>==>=>>>=>==>>>>>>??=??>???===???>?>??>???79@@A@@59@@?@>=:8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFFKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKKKKK=+68@=?8@><;2<@26<8@=>???>?6???<>=97:=:<>=?;=>>>>>>=><:>><>>9<>>=>=>>>>>>>>>==>=>>>=>=88>=>>=>=>>==>>=>=====<==<===<===:==<===;>>@?><>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:<>97<;4)9-))=71:=>=51=>><>;898<<:;>>=;;01>:)/<>=6=====<==93=9<<47>>;<<==<6>3?>:<= MC:Z:151M MD:Z:7A18A11T1A22G87 PG:Z:MarkDuplicates.1Q NM:i:5 MQ:i:60 OQ:Z:############################################FAA,A,A@=;>?@==>>=?:>>9=9+.*=:+<-)<,4;><7>>>>:>>>>>>?>>>>>>>;==;:>>?>>>>>>>=>>=>><=>>>>>>>><>>>?=;==>>>>>>>====9==>>>>>>>??>>=<>=>>???>;;> MC:Z:151M MD:Z:1A149 PG:Z:MarkDuplicates.1D NM:i:1 MQ:i:60 OQ:Z:####F77,FKFAAAAKFAFFAKAFF;;?????>>???>>>>====>>>>>>?>>>?>>>>>>>?>>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>>>>>>>>>?>???????????@?@?=???=@??????????@???@@AA@@@@@@@AA@@?>=:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E NM:i:0 MQ:i:60 OQ:Z:AA==>?>>?>=>?=====<===<=======<=>====<=======>=<9=<=>>>>8=3=>>>>>:0==>>==>=;>==>==>>>>>>>>=>>=>>>=>>>>>=>9>>=<>=:<>?@??????>?>??>>=??@??>>?@?@@@@@>==<:7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A@9'*@>/;5>>?>/>9?==?@=0;1>>>>8;21<*=9>==%%81*8::(7=<=:**6<%=<80>><==*<5>>>=2;><>>:=>>=>>><=:>8==*=7<<=8=8=:===<==<<;=<===)=24=;==>>?>::896=?; MD:Z:10T7T31T100 PG:Z:MarkDuplicates.1Q NM:i:3 OQ:Z:######FFA,,AF7A?:;72>9-)3@937?@8@??=@@???>?@@?>9>?>??<;=5:03<>????>??;>=2>>>>=><=>><:==>>>>>>>>><>>=>>>=>>>>>=>>>>=>>==>>>?>;>==<<=<===<===>==<===<==>==<>?=>=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FAFA77<<,,,KA7????>>=>>>>=:>>>=>>>>>>>>>=>>>>>=>>>>>>9>>>>>>=>;>>>>>>>>>>>>>>>>>=>>??>???>????=??==8???????;>=??@>6>7>@>@>@@@><@@A@=?=@@=@B@@<7@AA=>;:98 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKFFKKFAAFKFKKKKA8@=???@???><<>9.?<@2?>>>=>=:9>=>>>>==>=>>>>>>5>>>>>=><9>>>=;:;;>7>>>>>=>>=>>>=====><=======<<===>=====<==<===<===>==<==>9==>=>=>>?>???>@> MC:Z:151M MD:Z:33A117 PG:Z:MarkDuplicates.1M NM:i:1 MQ:i:60 OQ:Z:####A7A><,<;;=?;>>88-:??<><>>>??>>>>=?;>>>>>>>>>?>>>>>>>>>>>>>>>>>>>>>>>=>>>?>?>>>>>??>>>>=>>>>>=9>>>>??>>>=><>??>>>>??>>???>:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:#AA,,,KKKKKKKAFFA,AAFKKKK@A9=-/*=@=A@@@@>@A?@=@?<;.)8.?=?>8=?????????????=>?????<5?????????=>>=?>>>>>>>>>>>>>>>>>=>>>?>?>>=>>>?>>;>>>>>=>>>=>>>??>>>>=>>>?=>==>?>>>>??=<;- MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:AF<,AFKF?>>>=>>=<=======<=>====<======>==<9=<=>>>>>>=>>>>>>:>>>>>==>=>>>=>==>>=>>>>>=>>=19==>>>>>=>=>>=>>>=>=>@???;????>???>???@?#?>??>??@??7@@>?@@@@>8;:: MC:Z:151M MD:Z:85A40G24 PG:Z:MarkDuplicates.1K NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AFKKKFFKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKK#KKKKKKKKKA?>?>>>>>>>>>>>>>?>>>?>>>>>>>?>;>;<>>9>-;=>>>><;>>>>>?>:>>7>>:>99>?>0>??8:<>?>?9<;>(?<.:;>?<>;7/,>;@@??@@?:@=?@@@@A@@9/?19A8--*+0?:??>.:;696 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFFKKKK,AFKKKKFAKKKKKKKAKKAKFFKF7FKF7FKKFFFAKKKKFA???>>>====<=======<=>====<========<<8========>=>>>>>>>;=>>>==>=<===>==>>>>>>>>=>>=>>>=>>>>>=>=>>=>>:=>=>;>???>???@??>>??>??@=@?7?>=@>@@?<;## MC:Z:151M MD:Z:149T1 PG:Z:MarkDuplicates.1P NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAFKKKKKKK>AA=AA<@@@>//@=@9@@==@@@?6@@@@@?????@??????????=>>?;;?>?????=?>?>?>>>>>>>>>>>><>=>>>>>>>>=>>>>>>>>>>>>=>>>====?>>>>>>>>=?>><>=>=>>>>>>??>=<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:##AA==>>>==><=>====<=>=====>==9>=>>>>>>>=>>>>>>>>>>>><;>=>>>=>==>>><>>>?=??>?>?>??>???>?>?@????????>?????@@A@@??@@?@A>@@?@@A@AA:A?AA@?@?;769 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKAKKKKKKKFAKKKKFAKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKFKKKA@@A>?A??@??>?@A><@9?>?9?>????>>>>?>????=>>>>>=>>>>>>=>=>>>>>>>>>=>>=>>>=>>>>>=>>>>=>>==>>>?>>>>>=>><===<==>>>><>=><==>==<==========>=<>>>>>=???>@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:KKKAKFFFFKAAAFKKKKFFFFF7KKKFKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1114:23399:48705 99 1 14804888 60 151M = 14805151 414 AAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGT >==>>?>>=>?>===<========<<8=<=======<=======>>=>>==>=>>>=><=>>>>>>>>=>><>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>?@??>>??>??@??>??@>??????=?>@@@???@?==;9=6,-@;<=;,98<.?=:>:==?????????????@?>>>;?<=<6;<;>=>>>948>>>>>>>>>>>>>>>8;<>>>?>?>>>>=>?>>>>>>>>>>>====>??>>>>>===>====>?>=====>>==<>>=>>>>>???;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:##AFFAF7,,F8;>@AAAAAAA@0@>@1?@@:?@A@<7@@6@@@;?=@@>:?@>????????????>?????????????????>>>>>>>=>>>?>>>>>>>>=><>=>>>?>>>>>>>>>>==<>=?>>>>>>=>>==>====>>>>>?<><:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAKKFAFFFAFKFA,KFA,FKFFFKFAA?=>0??>=>>>7>9=;>>>8;38;('48==8=<===>?;+;;==>><;=;=<9>&81<>6>9=7>>>?>>>?<-8==>>>5:=(-)<%/,>;;??;>???@;98>6>########################################### MC:Z:151M MD:Z:25T102T3T3A1T12 PG:Z:MarkDuplicates.1H NM:i:5 MQ:i:60 OQ:Z:AAFF,KKFFFKF>>>====>=>>><>9>=>>>=>==<=>>>>>=>>>>>=>>>>>>=>=>>>>>>>>>=>>=>>>=>>?>?????????=??????????>>?????????@?@?@@@@@@A@:?@@A@@@@@@?AAAA<=AA@AA>AA@>;86= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:>>>03,0->9=;5*5-+?.>>>>2><)>=:3,//02;<8-805,:)=<==;<,==7;9=-37==<><;><7>91>?;@> MC:Z:151M MD:Z:9T3A2T8T7T31T21A7G8C12A33 PG:Z:MarkDuplicates.1Q NM:i:10 MQ:i:60 OQ:Z:##########################FKA<<,,(A7A7FKKFFFF?>@?>@>?>?????>8)97??????????==,=:+.7&>?;=;><<-<6>>>>??>79>>>>>04>>>=??>>>>=>==9<=>=6=>=>6>>>>?>>=<9 MC:Z:151M MD:Z:0A10A0A6A4T55G70 PG:Z:MarkDuplicates.1H NM:i:6 MQ:i:60 OQ:Z:###############################AA,,FAFF77FAA7FKFKKFKFKFKKFKFFA,<7KKKKKKKKKFAF,FA,,A,FKAFAFAA,AAFFKKKKKAAKAFFAKKKKK77KFKFKKKKFKFFFFAAFFF@>?A@A>9?@=?@;>?@@96>?=>?=????>?>???>??=???>?>=?????>>>=>>=>>>=>>>>>=>>>>=>;==>>>?>>>>>=>>=>>>=>>>;>>=>>>>>>?>=<==>=========<=====<=======>??=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KAKKKK>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>>>>>>>>>>>>>>>>>>>??>@>=?=???@@??????????@?????@@??????=@@??>@AA@@@@@@@>@?@@@=A@@@@:==8>>>9><>>>=>=;>=077;5;9==(<,1;:?>><>=>;>>><9<>>>>>(=0&---;>>>&7=>>>>);;>>>>17=6*59$6<9<;>650:2>=?<>+,+(5>@=;??18<############################ MC:Z:121M30S MD:Z:37A22A2A14C6T6C23C3T7 PG:Z:MarkDuplicates.1A NM:i:8 MQ:i:60 OQ:Z:49:@@@9+3>?@:>99@>@?<@?@?????>?;>??>??????>?>?????????>??>>>>=>>>>>=>>>>=>8:)>>>?>>>>>=>>=>>>=>>>?>>=>>>>=>?>>=>>?>>=======<=====<======<<=====>?=?=8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A7F7AKKA,7FKAFF<7KFKKAKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAF,KKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:2220:14336:54102 163 1 14804903 60 151M = 14805087 335 AAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTNCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGAT <>>>>>>>==<8=<====>==<==>>>=><>>>>==>=>>>=>==>>>>>>>>=>>=>>>>><>>=8>=>>=>>==?=>?>>>>>;<#>>>?>???@??>>??>>?@??>??@>@?@@@@@@?@@@#<<@@?A@@@@?A@AA@BA?>;88> MC:Z:151M MD:Z:87T63 PG:Z:MarkDuplicates.1J NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAFKAAKKKKKKKFKFKKKKKKKK@?A>AAA@>@@@@9=7@?@@@@@A@@@A?=???????=?????????????????@?@??=>=@@??;???>?>>?>>=>>??>>>>;>>=?>>>>??>>>>>>>>?=>===>>>>>>>>;<>>>>>>??>@<=<<9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 NM:i:0 MQ:i:60 OQ:Z:#FAKAA77<,,?>>??>==9>========<============<<=<>8<<=<<=>>=>>>>=>>=>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>>?>>==>>=>>?>>=>>@>????????>???>?>??>????>???@@?@@@@?><;:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKK<7AFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKF UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:2108:15392:72350 147 1 14804914 60 2S149M = 14804706 -357 GGGGATGGGTGGATGGCAGTTTTGGACACTTGAGACGCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTN ##650?3<@AA;A@?;5<9A/?@@;:4?;@>;@7>.'@@@>?9>?=58/=>=7-??>?=:>80<5<*=>1>><=>=?>:(>><;>>?>>=<>>;>>?>>=>>><><==>><7>><>=<=>>>>=>====>-===>>=<=<===>=?;><<# MC:Z:151M MD:Z:34C113T0 PG:Z:MarkDuplicates.1J NM:i:2 MQ:i:60 OQ:Z:##F<,<7AKKKAA:<>>?>>>>>>?>>>>>>>>>>?><>>>>;>>>>>>>>>>>>>>>>>>7;>=>?<=>>>?;>>>>>>>>><>>>>>>;?>>>>>>>?>>+=<=>??>7<==??>?7-6997,6?-19)2.-?'9>@;><################## MC:Z:151M MD:Z:126A7A3T12 PG:Z:MarkDuplicates.1I NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFFFKKKKKKAKKKKKKKKKKKFKKFKFKAFFFFKFFKKKKAKKKKKKKKKFKFKKKKAKKKKKKKKKFK,FFAFKKK7AFFKFKK7,A7A7,AF,7<,7,,F,AAK?????????>??>???>?????>????>??>>?>>?>>>>>=>>=>>>=>>>?>>=>>>>>>?>>=>>?>>>>>>>>>=>>>>>=>>>>>><<=======>==<=<=<==<======<>?=?=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKKFKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:4:2109:5355:66039 147 1 14804923 60 151M = 14804562 -512 GATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTT ##::=?A:/>A@<=A?72/9???>7@@@@@@;<>9?@?;;=6?,-?>>:@:9=7?>?@=?@@@???@@>=;:<>>>?>>>>>?>>>:>>>>>>=>>=?>>>>>>>>>>????>???>???=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H NM:i:0 MQ:i:60 OQ:Z:##AFFKKA,?>======<<=<===<=<<========<=>=>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>>?>===>>=>>?>>=>>?>??<>>???>???>?>??>????>?????>?@9?=@>@?>@>@@@@@@@@@A@@?<:?@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKK??>><<=<===<=<<=========>=<>>==>>>>>=>=>>=>>:<>=>?>>>>><>>=>>>=>>>?>>==>>=>>?>>=>>@>>???????=>??>?>??>????>?????>@A@@???@?@@?@@@@@99AAAAABAA?A?=?<8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@?@?@@@@A@????????????????>?????>???@?@>>=>>>?>>>>>>>>=>>>=>>>??>>>=>=>>?>>=>>?>>>>>>>>>=>>>>>=>>>>>>><>>>>>>>?=>>===<==<======<=>?>>?>>>==?>?><*>:9/2*/;**/0?><7<8-2:;36**/>8;==2<6==6->=6,->8>7*==;;>6?>><<>;:=80;;<>>9<>=>==>><,>;6:9=/;8<4801.<0/9-/:,=====<,=>==>=>=>=<>;>:==> MC:Z:151M MD:Z:22G96G31 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:A<,,><><=>><=9;=======<<<=<===<===>>=>=>>=>>>=>=>?>>>>>>>=9;>>=>>>?>>==>>=>><=>=>>?=>>>>>>)<><=?>>>?<>????>?:???>?@??>?>@1:>>?/?0@??@@A@@A@@A@?@@@==### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFAFFKKKFFFKAFKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKFFKKKKKKKKKKKK,AKFFKKFKKFKKKKKKKAKKKKKKKFFKKF7AFKK,A,AFKFKKKKKKFKFKKKKKF### UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:6197:55614 147 1 14804939 60 4S147M = 14804810 -276 GAAGACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTCCCTT #############@?;@=>8*7=),-.)>>@7>@:??@;818=1;9,<;>-7/????=7=8=<,:(8==<6<8?>?=4(==8++,=78(=>>>>>>=8=8,>6>6<>>>=0489>>>>>>>===>>>>=(6?0,?>>>>><>>=>>)<<>< MC:Z:151M MD:Z:142T4 PG:Z:MarkDuplicates.1A NM:i:1 MQ:i:60 OQ:Z:#############KF=>8<9+.0+7?A=@@@@@@@>@A:A>?>@@?@????????<<=<;7??@@????????@?????@?=??>;8>::>;>>>>>>>>>>>8=>>?>?>>>>>>>>>>>>>>>>>?>>>=>>>>>>>>>>=>>>?>>>??=;:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U NM:i:0 MQ:i:60 OQ:Z:#FF77F<<7A<,,,,7AFFAFKKKKKFKKAAFKAKKKKKFKKKKKFFFF<??>>>>>>>>>>>>>>>>>>>>?>?>>>>>??>>>>>:>>>>?>>>>>??>>>>>>>??>?>?@@??>???>?=????????????@?<:7:???@@@7?@?=8?A@=?@@@@<>>>>>>>>>>>>>====;:>>=??=>>><>>>>>?>>>>>?(8=>>>>>=>>;;>??>>>>>=>>?>>>>>?>>>>>>>>9>>8>=>?>>>;?>>>>8>?9<@;A6=@@>>>4<994 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKFKKKKKKKKKKKK,AFKKKKKFFKAFKKKKKFKKFKKKKKKKKKKKKKFKKKAKK7FFKKFFKAFKKKKKKAKFKKKKF@>?=>>>======<=<==<===<=<=>========<===<;>='8>==9>=>>?>>=>>?=*<>>>4>>=>>>;>=>>=6>>>=>>>>>=>?>>=>==1<3=>>>>??>?=4*>@>???>???=??>=??@>??@@?@?@??==8>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK,??@<>*@@???;????;?778=?>@>:*=?5:?=??==>>>?=<==>>=>><>>=>>?>>>=>81>>=><10>=>><;>>==>>=>>>>?=>:>=>:>><>>====<==>==>==<9<===<==<===>==<===>>>=>???><> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:???><>/>=8;<=>><>=>>;=<;=?>=&<><<>>>>>>>>>?>><>8>>>>?>>>>>;;=8/8>=>5=>90<1>0=;?.;.(9///???.:*.;>@?>../..8@@@>?/:./>?<1A@A9=@A>/6=:@A>AB:9<:A1,:= MC:Z:151M MD:Z:32T118 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKAF,FK7?=>??=>>>>><=<==<===<=<=;========<===<===>=>=<>>=>>?>>=>>?=>>>>>>>>=>>>=>=>==>>>>=>>>>>=>?<>=>=>=>>=>>>>>>=>>@??@????>???>??>???@>?>??>??@?@??@@?::;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAKAF UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1123:29701:26782 99 1 14804957 60 151M = 14804983 177 TGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTTCCTTACTCTTCCTTCACAAGCCATAA >?=>??=>>>>><=<==<===<=<=>========<===<===>=>=<>>=>>?>>=>>?=>>>>>>>>=>>>=>=<>=>>>>=>>>>>=>?>>=>=>=>>=>><>>>=>>@??@????>???>??>=??@>?>??>6?@?@=??@?>=;>>?>>==><=<==<===<===;>>>=>=>>=>>>=>>>?>>==>>=>>?><<>>?=>>>>>>>>=>>>=>=>>=>>>>=>??>?>?@.===>?>??>??????>?????@?@@?7@@@><@>@@@A<@;@><;A@@A=AA;;@@=;:=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FAFFKKKKKKKKKKFKKKFKKKKFFK???>>>>>>>>>>>>>?>====<>>=>>>>>>>>?>>>>>>>>??>>>>??>>>>>>>>?>>>>>?>>>>>>>>>>>>>>>??>>>>>>>>>>>>>>???@?@??@?>>>??>??@???@?@?@;@??=@??)==@8=@@@A?><;;# MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1W NM:i:1 MQ:i:60 OQ:Z:A<@?A+=:@@68/@=<<7?@>?>;???????@???>????==>;==>=>>>>>9==>><>><>?>>=;=>=>>=>>>>>>=>>?>>?>><<<>>>==;9===>==<==<===<=========>===>?=<<>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KFFAA<<?>>>>>?>;>>>==>=>>?>>>==?>>>>>>>>??>>>>??>>>>>>>>?>>>>>?>>>>>>>>>>>>>-8?>=>=>?>??>???@?@.<+?>>??7@??@?>?@?<=><=(@?8=######### MC:Z:151M MD:Z:137A4G8 PG:Z:MarkDuplicates.1A NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKFAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF,AKFKKFKKFKAKF<.?69@@?=<8@?>/)9/19*?>87;:<>;<7A?@@A@<@?==9>>????>@??<=6???@>??@?>?=<,@??>>>@>>>>>>>>>>>>?>>==>>>>?>?>>>>>>>>?>>>>>>>?>>?>?>>>>>>>?>?>:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I NM:i:0 MQ:i:60 OQ:Z:FFKFAA<=?@?@?@@7?A@@@@??????>>58??????>?=)7?>><>:??:=?><3:>4=>9>>:>>==>>=>>>;>>>>>>=<>>>>>=>=>>>>=>=>>=>>>>>>?>>>>><=<==>=====<<=====>======<<>??=;8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:#KKKFKKFFFFKFKKKA59>?>>8??????;;>>=7/>>>>>=>>>>>>>=>=79>>=>>=>>>=><><>>==>>>>>=>=>>>>=>=>>=>>>>==>=====<=<==>======<=====?==>==>==>>>?=;>?> MC:Z:151M MD:Z:5A145 PG:Z:MarkDuplicates.1J NM:i:1 MQ:i:60 OQ:Z:FFFA<,FA?????@?@?@?@????>?<>???=>=??????>???=>=>><<>>>>>=>>>>>=>=>>>>>>=>>=>>>=>>=>>>=>>>>>>=>=>>>>=>=>>=>>=:>=>=====<=<==>======<=====>========>>>>?<>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:19??>==?>?>>>?7>?>>?>)<041'5=;8?>>?>>>?>>>>>>>;?>>>=>>>>>>>?8<8<>>>>?>>>>>6;?9>>>=8>=;,).8=?;>?@?..-98;>+'>?;>??6.=5:'/7*=:@:>A@A7.;>@@@@>######### MC:Z:151M MD:Z:122A20G7 PG:Z:MarkDuplicates.1F NM:i:2 MQ:i:60 OQ:Z:A,AFFFFFKKKKKKK>@?>>?>??>>?>>>>>>>>>>>?>>?>>>?>;5=>>:>?>>>>=>>>>>><>>>>>>=>>>>>???>?>?<3.>??@5?=;=>>@>?????????>??>?@@@@@>@=9?@@@?@@@A@@>A@??A??9==8<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF7FKK?;7?;)-?<@@?@@?;=<?::;=@@???>9:7?>??>:-@@?>@??@@??>=8@?????@>?>@>=?>>>?>?>>>>>????>???>>?>>>?>=><>?>?>>???>>>>?>>>>>?>>>???:=< MC:Z:151M MD:Z:146 PG:Z:MarkDuplicates.1H NM:i:0 MQ:i:60 OQ:Z:##############F7;?>???>??>>?>>>>><>>>>>?>>?>>>?>>>>=>>>?>>>>>>>>>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>>>>>>??@>?>>>?????@?????@>@??@???????>???@>>@@@@):>@?>=:<>?8>??>>?>>>><>40<:4?>>?>=8?=>>><>96?:>48>>=>>>>?>>>>>>>>?>8>@>??2<;??8?>>?:>;??>>>8;?>>??-,7,,<<0>???A?@@<=<)/);@6-(./9>*@4/>*2<)>=*?#### MC:Z:151M MD:Z:93A30A4G7T13 PG:Z:MarkDuplicates.1T NM:i:4 MQ:i:60 OQ:Z:AAFFF?7<.@@@@@@?;7@@?>=5*6??@?????;8=?????==???????????=????9??>>>>>>>>>>>>>>=>>>>>>>>>>>>>>?>>>>>>>8>>>>?>>==>>>>>>?>>>=>>>>>>>@?>==9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U NM:i:0 MQ:i:60 OQ:Z:######KAAA7<(<7KFF==-@>>?>>>><<>>>>>?>>?>=>?>>=>>>>>?>>>>>>>>>>>?>>>>>;=>?>>>?>>>>:???;???@????=????@???;????@<@????????@??@?=A@A?>A@A@@@@@@@@>@:?@A??@AA?@A>?>=;8<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:AAFA,KKKKKKKKFFKKKKKKKKKKFKFKKFKKKFKKKKKKKKKKFKKKKKKKKAFKKKKKKKKKKAKKKAKKKKAKFKKKKFKKKKKKKKAFKKKKFKKKKKKKFKKKKKKFKKKFFKFKKKKKKKKK>??>>=>>>>>>>>?>>?>>>?>>>>>>>>?:>>9><><>>>?>$/>>>5=?>>>@;=?><;@?>>8?<4=<2/6@@@?<@?@=?@)79??@@@<#### MC:Z:151M MD:Z:48C102 PG:Z:MarkDuplicates.1H NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFAFKAKFKFKKKKK,7FFF7FKKKKKAFKKAFKKFFAKA7FAFKAKKKKKKKKKAFKKKKAFKKAAKKKKKFAAAF7,>????>>>78.>;:?=><>:>>=>>=>>>=>>>>>>>>>>>>>>>=>>>>>==>>>>=>>>>?>>>>>>>===>===>>=<=>=>=>======8<=============>>>>>>=>??>>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:====<=====<===<===========<>=>>>>>>=>>=>>>=>=>=>>=>>>>>><<=>>>>>>=>>=><>>>>?=>>>>>>=>?@?>?>??>?????@???????>???????>:??>@@A@:?@?>@??@?@@?@@>=:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAFA'>:9@<@:)88?@?>???>;=>7<;>?????@????????????@??>:>>??@>@?>>>>>>>>>>>>>?>?>>=>?>>>>>>>>=>?>>>>>>>>>>>?>>>>>>>>>?>?>>>???<=?< MC:Z:151M MD:Z:3A147 PG:Z:MarkDuplicates.1V NM:i:1 MQ:i:60 OQ:Z:#####FFKKFA==<=====<===<===========<=<>>>>>>=>>=>>>=>=>=>>=>>>>>=>>=>>>>>>=>>=>>>>>>?=>>>>>>=>>;?>9>??>?????@???????>?????????????@A@@@@?@@=?@?@@@=@@@>;:7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKAKKKKFKAKKFKFKKF UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2108:5101:51711 163 3 17077053 60 151M = 17077363 461 ACCTGCTTCCTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAACTTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTCAATTCAAACTCTGCTGTGTAGAAG =6=<=====<======>===>>====>=<>>>>>=>>=<>>=>=>;>>=>>>>>>>>0>>>>>>=<>=>&>;?<>;??????>??.=&><=?>??>???>>:@???7??:?9?@@+>>@/?)1./@81@0'A9AA@########## MC:Z:151M MD:Z:74A51A14A9 PG:Z:MarkDuplicates.1P NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKFKKKKKFFKKKKKKKKKKK7FKKKKKFAKKK,A?:??>>>>=>=2<=<===========<=<=8;===<==<===<;===>==>>>>>>>>=>>>>>>==><:6>>>><=>>>>>>=9>?>=>=>>=>>>>>?>>>>>>>=>???????=??>??@????>??;>?>???@@@@>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAA<==@?>>>>3;>?>>>>>>>>>>>?>>6:>>>>?>>>?>>>>>>?><>>>?>>=>9>>>>=>>?>>>7>;>>?6<>>>>>>>>?>;>>>?>?>>@>@??>??,>(:+6,6:;>>=??6,9-<;638-;7@>:??8;?@<72.-)8><### MC:Z:151M MD:Z:103G5G38A2 PG:Z:MarkDuplicates.1I NM:i:3 MQ:i:60 OQ:Z:A8:<<@?6<.>??=:<92;<-/>;4:-:7??>?8>??;*?95->?6/<9??<6:==???=>=490;/5>>>:*;==;=><>>7=;5;;>==>>>>?>>==0;.<;>>;/:>>;=;=>=>==<<<=====<=;0==<=:70===<=?=18?= MC:Z:151M MD:Z:42A29A78 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:FKKKFKF7<,<@>=?@@@??>?>???>?>??????>??>???>???>>>=>>>>>>=>=>>>>=>=>>=>>>>>>?>>>>>=>=>>?>>>>>>=>>>>>?>>>>>>==>=>>=<===<=<==>====<=====<=====<=<>==>>=>>@?=>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKAFAKAFAKKKKKKKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:2122:17411:52924 147 3 17077062 60 151M = 17076813 -400 CTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCT <67?A@@?:5+;@@?@@@@@??@>?@@?>??????>?>???=>?>??=>>>???@?????6?=>>?>>>>>>=>>>><5>>>>>>==>>>>>=>>>=>=>>87873===<=====<====>????>=: MC:Z:103M1I47M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AKKFA,<7,KFKF?>?=?@@@@@@@@@??@????????@??=@??????@?>???@??>???>?>>>>?>>>>>>>>?>?>>>=>>>>?>>>>>?>?>>?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>>>>?>>>?>>>??>>?>>>????>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I NM:i:0 MQ:i:60 OQ:Z:FFFFKKFFAFKKKKKFKKKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:6:1120:25712:20120 147 3 17077063 60 151M = 17076752 -462 TGTTCCCACTTTTGTGGCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTGTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTG ##################?>@?))).>@:)9>))8>:7)-;>@==>(??6<52-8=>>=95?;?<>??;?@???<.7?;>>:(,';>&>>=:6>>>>>>>>7;->>>>>>>>>>73++,;-54+,=7=<>7?;>>??8580;>>>?9;9=- MC:Z:151M MD:Z:16C70C62T0 PG:Z:MarkDuplicates.1B NM:i:3 MQ:i:60 OQ:Z:##################A;<=>>>>>====<=<======<==<===<=<=<==<====>><>=>>>>>>=>>=>>7>>>?=>>>>>>=>>?>=>=>>=>>>>>?>>>>>>>=>>>>>>>>>>>=??@????>??=>?>???????>=?>???@@A@@@??>>;:9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKFAFKKKKAFKKKKKKKKKKKA UQ:i:0 AS:i:151 +HK35MCCXX160204:6:1221:21054:54453 83 3 17077067 60 151M = 17077030 -188 CCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCC 7878??@@@@@@>:7@A@@=>>??;>8=?@?<>>>;@?????@???>?=>??>>>?>>>>>>>>?>?>>>>>>=>?>>>=>?>?>>?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>>>>>>=>==>?>>>??=>?>>>?>?>>??@?>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B NM:i:0 MQ:i:60 OQ:Z:AAA7KKKKKKKKFA7KKKKFFAFFAF7AKKFAFFFAKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1203:18994:66214 99 3 17077070 60 151M = 17077224 305 ACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAACTTGTCCAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAAT >9>???7=.=>>=<=<======<==<===<=:=<;=<======<>==>>>>>=>>=>>>>>=?=>>>>>>=>>;>;>=>>=>(=>>?>>6>>=>=*<>>>=>>>>>=>8???>?>??????>>@?>>????@@A@??@A@<;;;A MC:Z:151M MD:Z:89A5A55 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFK>?>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>>>>>>>>?>?>>>>>>>>?>??>?@>@??@?@??????????@???????????@????????@A@A@@@A;?@AA@@A@@@A@AA@BAAAA?A?>=<86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKFKKKKKKKFK><======<==<===<=<#===<=====>>>=>>>>>>=>>=>>=>>>?=>>>>>>=>>?>=>=>>=>>>>>?>>>>>>>=>>>>>??????>?????>?>???=?>??@?>??@@@A?>@?@@A@=@>@@?@?/73:@ MC:Z:151M MD:Z:24A126 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFFFKFKKKFKKKKKAFFKKKKFAKFKKKKA,<7A7 UQ:i:2 AS:i:149 +HK35MCCXX160204:4:1114:8887:45470 83 3 17077081 60 151M = 17077038 -194 CTCTCCCATGTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCAC 4=8<>>?7>5@;>80AA@>666:8:???>@?<=?=??*'@?@???>?@@@@?@@@??@>?><>=>>>07=>>?>?>>>>>>>>>;?>>>??<&>>>??>>>?<>>>>?>?>>>?>>>??>>?>???>?<>???>>>>>>>?>;=>???=>> MC:Z:151M MD:Z:0A8T141 PG:Z:MarkDuplicates.1H NM:i:2 MQ:i:60 OQ:Z:7AAKKFF7A;:;?=%&>>>?>>>>>>>>>>>>?60>>=>>>=>?>>>>>>>>>>>?>>>>>>>>>>>>>>=?>>>??>>?>>>?>=;%==?>>==>=>>>>>>>>>>>>>>?>>>@> MC:Z:151M MD:Z:7C4C108T29 PG:Z:MarkDuplicates.1A NM:i:3 MQ:i:60 OQ:Z:FF7FA<,,FA<,,KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK77KKAKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF<,KKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:33 AS:i:136 +HM3G2CCXX160308:2:1101:29031:56528 99 3 17077090 60 151M = 17077406 467 TTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCT >@=??>>>>=>==<<=<========<===;<=<==<======><>>==>>=>>;>=>=>>==>>>>?><<===>=>=,>=09<>=>=>><>>=>=>>==>=>>>>>=>8(>=:4=>=??@?>????>?==>1:@?@?=?@@>=;:A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAF<:0&5>>>=>4<>>>7>=>>>=>=>>?>>>==>>>>>=>>7:>=><>=<==<==>=>=<==>=<====<=======<=<=<===>>=???>@?@??@@@???>;>????>?>??>>?????@?????=>=>>?>>>>>>=>>>>>?>>>>=>==>>>>>=>>>=>=>>?>>>>=>>>>>=>>>>>=>=?><>><==>=>=<==>=<====<=;=====<===<===>>=>??>?>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKFFFKKKKKKKKKKAKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2113:21552:53908 163 3 17077098 60 151M = 17077279 332 TCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGT =<9<=>>=<========<====;<<==<======?=>>>>>>=>>?>=>=>>==>>>>?>>>>=>>=>>>>>>>><===>>?>>>>=>>>=>>????????@?>?????@?@?>2>=?):>>?>??@@66??>?==>@?@A=@1@?7;<;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAAFFKFKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF,AFF,AFFFKKKKK<:>=>?>>?>>>>>>=>>>>=>>>======?>?>=====>>?>>>>>?>?>>?>?>>>>>>>>>>>>>>>>>>>=>>?>>>>>>>>>?>?>>>>>>>?>>;>>>>?>@??@??@2=<::# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKAKFFKKKKKKKKKFAAFKAAFKKKKKKAFFFAF7FF>6>?;:=>=>>>===<>>>>>7>>>98?>>3<>>=>?>>>>:?>?;>?>?=;=>><<==>>>>=>?>?<:>>@;???).<,;>9@80?1-9-:0=8@@,@@>@-@4A>()8=A'/(??@@=B8=AB@:7## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:AAAFAAKKAFKKKKKKKKKFKKKKK=>?>?>>>>=>=====<==<=<====><======<==>=<=<=>==>>>>?>>>>>>>=>>>>>>>>>>>=>>?>>>>=>>>=>=>>>>>>>>?>=>>>>>?>?>=>>??>????>???????>?>?>??>??>?:@?@@@?@@?==;;6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKK7 UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:2212:21004:54295 99 3 17077107 60 151M = 17077269 288 TGCTTGTTCATGGTTCTGAACTTTTACTTTGTTCATAACCCCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGGGTAGAAGTTTATATCTTATCCAATCTGGCCGTCACTCCTCTTCTATCCCTGTTTCCTTACA =:>>>>=>>==>>>>&;==>>>>=>>>>>>>?>=;=>?>?0;?>?=>:>>>>/<>>>>>>>>>>>>>?>>=>>>>;>?<=4>>>(2>>>8>?@?@??@?@?????59//)0)$-'.0:11:1;=:A@?@@2@@;?@@??;:7; MC:Z:25S126M MD:Z:20A18A49T30C17A12 PG:Z:MarkDuplicates.1U NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKK,FFKKKKKKKKKKKKKKKKFKKKKK7FKKKFK<;>=>>>?>>>-;>>>?;?>>8=>>>>><;>>>>>?9>>><<-->>9>>--5==9>9>>><>>><-:>><<>?@?@9??99=?,(9-2++9-<:;6>?=<>=9.7:?>)'2):(./@?@;(@@9@?A:8/-4,>>@9@@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 NM:i:0 MQ:i:60 OQ:Z:AAFFAKKAAKFKKKKKKF,AFKKKFKKKAFKKKKFAFKKKFKKAKFKAA,,FKAKK,,>>>??>>>>>?>>>>>>>>?>?>>>>>>>>?>:>>=?>?>?>>>>>>>>>>?>>>>>>>>>>><>>>>>>>>>?8?>>>?=;>?9>>=>>>;>:>2?>?;=>????@????@<>@???=??9?@=@)?######### MC:Z:151M MD:Z:143A7 PG:Z:MarkDuplicates.1V NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKAKKKKKFFKKAKFFKFKAKAF7FKKFFKKKKKKKKKKFF=?>===<==<======><==#===<==>=<>=>>=>>>>>?>>>><3<'9/=>><>>>8>==>0<>>>=>>>=>=>>>>>>>=?;:>>?>>@???0>=????>?==09??>?>?:<>??@?@;=?@@@@@@@?;A@199@=4B6 MC:Z:151M MD:Z:24T27C68C29 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKFKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKA7F,A7FKKAKKK7KKFK7FKKKKKKKKKKKKKKKKKFKAFKKKFFKKFKKKK7FFKKKKKFAA7AKFKKKKAFFFFKKKA?>>??>>>>?>?>>>>>>>>??>>>>?>?>>?>????>>>>>>??>>>>>>>>>>?@@=????@@??>@???@???@@?@@???@?@9>@?@???@A@?A<@7<8?:@@@?@A@A.9@<@@=?=9<@>;A<>@A@@>9;8<7: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L NM:i:0 MQ:i:60 OQ:Z:A?@A@AA>AA@A@?AA@??>@@@?>@@@@?@@?@?@????>?>>?????>???>?>??@????>????>?>>=>=?>=>>=>>?>?>=>>?>=>>>>=>>>>>>>=>>>=>>=>><=?><==>=<>=<===>====<>>??>=: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:#FAAKKKAKFF?=?>?>=>>>>==><======<==>=<=<==<=====>=====>><>>>>>>>>>>>=>>?>>>>=>>>=>=>>=>>=>=>>===?>?>=>>?>=>>=>=>>>>8>?>?>?9??>??>?@?>???????>???:=>@@>@???=<34 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AA?>??@??????>?????@?????>==>>>>>=>>>=>=>>?>>>>=>>>=>=>>>>>=>=?>=>>=>>?>?==>>?>=>>>>=>;>=>>=<===<==<==<=>=<====<==<===>=====>=>?>?=>8=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:1210:28280:55086 147 3 17077122 60 151M = 17077010 -263 CTAAAATTTTACTTTGTACATAACACCTCTGCTTAAAATTGTCAAGCGTTTGTGATTAAACTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGT ######################@@?94/>.::.7??.@.>7??>05#78<.&.,/.+>.<*7:-.=>;>9<>=..2>==>>&>,<>>;72.+/-(2..>)//281)7(8;=9>=7>7<;><>>=>5>>-=>-582.-95<=?>98::==7- MC:Z:151M MD:Z:2G14T28G13T85C4 PG:Z:MarkDuplicates.1J NM:i:5 MQ:i:60 OQ:Z:######################FKF<7,A,A<,7AA,F,==??>>?>>>=>>>===>=:>>>?>?>=>>?>>>>>>>>>>>>>=;>>>>>>>?>7>>><=>>?>???>????????9=??@?@??@?@?:<=?????=??:@?@@A@>A?A@@AA@@*.@>>?@48A@-7:?@@B@A=@A<65;59<8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKK7FKKAFKKKKKKKKKKKKKKKKAFKKKKKKKKKKKAFAFFKFKFKKAKKKKKKFKFKKKKKKK,,FFFAK7??<=:=@@A@?@9@@?@@??;@????>?>>?????>???>?>??@??>=:==7<>=>>>>>=>;?>:>>=>>?>?>;>>?>=>>>>=>>>>>>><;/;=>>9>>=>?>=>>>=<==<===>====<=<=>==>=8<=<=>>?=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKFKFFAF=>=<=<==<====;>====;=;<===<=7===7====>>8:;=>>>:>=>=<>>:*=>>>>>?>?>=>>?>=>>>>=>>>>>>>=>=:=>>=>>=>??=???????>???@60??>?>?@??@=;19>99?@?><;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:>>>7>>>>>>9>?>?>>>>>>>>>>?>>>;===>>>>:>>>>=>>>>?><>>>?=>:@==>@6>?6;;????>??@??@@?@?@-8-=@@@:7819--;@@A8A@AA<>(099@:9.487## MC:Z:151M MD:Z:18T119G11A0 PG:Z:MarkDuplicates.1V NM:i:3 MQ:i:60 OQ:Z:AAFAAFKKF;??=???/45??>=???<4=>>=?>?>>??>>5+>>>>>>;?=?58>6-<-1?>>?<9>?>>>>?>>>>>???>7?@<;< MC:Z:151M MD:Z:6A27T69C46 PG:Z:MarkDuplicates.1C NM:i:3 MQ:i:60 OQ:Z:###########################################KF<,<<,,F<,,F<,A7A,,,AKKFAKKFKFF,<=<>?>?>>?>?>>>>=>>>=68<>>>>>>>>>>?>>>>>>>>>?>?>>>=:>>?@>>@?>?>=@5?@?@?=??>??@?88<<==??@??@?@?>@<=7=?<>@@@@:A7>==@@@A@AA@@-93/38><################# MC:Z:151M MD:Z:134A7A8 PG:Z:MarkDuplicates.1I NM:i:2 MQ:i:60 OQ:Z:AAFAFFKKKKKKKKKKKFKFKKKKF7AFKKKKKKKKKKKKKKKKKKKKFKKKKKFAKKKKKFKKFKFFK7KKKKKFKKFKKKKAAFF>?>?>>>>>>>>>======>>=>>=>?>>>>>>>>>?>?>>>>>>>?>>>>>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>?>>??>>>>???????@?@>>>??@?@@??@????>?????????@@@@@@@@A??<:9? MC:Z:151M MD:Z:122C28 PG:Z:MarkDuplicates.1W NM:i:1 MQ:i:60 OQ:Z:>@@@>A@>>=@=<6@@>@?>>>3?>??@????>???????>;>8;=7>>?>?>?>=>>?>=>>><=>>:>>>>=>;>;>>=>>=>?>;>>>>=>>=>>>?>>>>=>=>>==>==<9=#=<==<=<;*>=<=====>@?>=?= MC:Z:151M MD:Z:122C3T24 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:#FKKKFKKKFKK<?@@@?@?@>70???>?????>?=:-;7?>@?:916?:5.@>>??@>>=8;<=;;><<8,*-<=*;3=>>8>?>=<;=>5>>9<=4'<;>>==9;7/><=:<====>=9<=====><=;=:<=====>?=9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKFF?>>>?>>?>>>>>>>>>>>?>>>>>>>>>?>?>>>?>>>??>>?>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>??>???@?@@??@?:?@????@??>??@@>.=?@?@?@?@@@@@@@@@A?>;98? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKFKF,AKKKKKKKKKKKFFKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1217:20182:19540 163 3 17077161 60 151M = 17077403 393 TGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTT =><>=?>========<==>====<===<=<====>>>>?>=>><>>;>?>=>>?>=>><>=>>>>>>==>=>=>>=>>=>?>=>>>>>>>=>??@>???>?>?4=?9>?>????>?=?????=?>?<>>@?>@?@@@A@@A@>=<@>;:8? MC:Z:151M MD:Z:107C43 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKKFKKKKKKKKKKKFKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>?>>>>>>==>=?>>>=>>>>>?>?>>>>>>>?>=>>>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>@>>???>?????????@?@???>?@?@???@?:=>;?8>82>?A@@AA@?5?>;:8@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKK?=>??>>>>>>>>>>>>>>9>.9=>>5=>??>>>>>?<=?>?>><>>>>?=>>><<1>>?98?>?>::?>>>>>>>>>=;?>@;??>??6?96<9<5?==5>=9-5>=?@?:;7@@>/6,./;=@@@@@@6==>?>>7<8=> MC:Z:151M MD:Z:104C8G37 PG:Z:MarkDuplicates.1H NM:i:2 MQ:i:60 OQ:Z:AAAFFKKFKKKKFKKFFFFKAAKKFF>>>??====<==>===><=>=<==>===>>>>?>=>>>>>?>?>=>>?>=>>>>=>>>>>>>=>=>=>>=>>>?@?>???:???>????>??<>>>>@??99+?@?>@>??0+5:@A@@;0:6@=?AA4A@A@@@>98>; MC:Z:151M MD:Z:100A2C47 PG:Z:MarkDuplicates.1P NM:i:2 MQ:i:60 OQ:Z:AAFFFKFFKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKKKKKKFKFKKKKKKAKKKKKKKFKKKAKAFAKKK77,AFFAFKKK,,=>>=>0;<5-<7====<===<;;09<8<==<;+6>>>=<;.7./18?.));<.1&,,')21)6:3<20<=4;10><*5,;8;//);/-;>=7:=>&::<<*+:;0,*),0<>?=2<1348>#################### MC:Z:151M MD:Z:7G26G21T9T13T16T4C4T0G2G19T11T5 PG:Z:MarkDuplicates.1Q NM:i:12 MQ:i:60 OQ:Z:AAFAFAK,AA<,AAKKKKKKKKK7F,AFAFKKFF,AKKKFAF,A,7,7K,,,FF,7,,,,,<(,AFAF<,FF7F,7FF,<,A7A,7,7,7FKF7AFK,AAAF,,AA,,,,,,:=???>>>>>?>>>>>>>>>?>?>>>?>86>?>>?>>>?>?>>?>?>>>>>>>?>>><>?>>>?>>?>?>9=?,6<;>==>>>+(99<>:66+87==>=>@8=(2)/+6??')*9,;<78-;,;<@################# MC:Z:26S125M MD:Z:100C10G7A0G15C7 PG:Z:MarkDuplicates.1I NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKA7FKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKFKKFAAK,AFAFFFKKKFFAA<A>;@?@@@:@?@>???;>>??>>??<>=>>=>>>>?>=>>>>=>>=>>>?>>>>=>=>?>>>>>=>9>>=>>=>>>>?>=>;>>>>>>>>==>>=>=>====<=>==>??:>;< MC:Z:151M MD:Z:100C50 PG:Z:MarkDuplicates.1J NM:i:1 MQ:i:60 OQ:Z:77AF?8?8?>>>=.9>??44???=??>??>?@?>?>?>;>>=>>>?8>>>=>=>?>>?>>=>=>>=>>=>>>>?>=>>>>>=>=<===>====>==>=<>=><>>?=*.6,.>1@>19<<969><<.;4.;>=7>>5=<(3->>854=9;5-*<<:><>:(>=8><<>1>>?:;.<>>>>><==<<4=<==55>>;==>>>=>>><2?@@=?@?@>???>?>@?>??>??@?@?>??@?>???>=<<>>>>>=>=>=>>=>>=>?>=>>>>=>>=>>>?<>>>=>=>?>>?>>=>=>>=>>=8>>>>>=======>=====>==<=>====<===<===<<>>>>>>?>>>?> MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:9>>??>>>>>>>=<=====>=>=<==>=<====<=======<==><>>=>>=>?>=>>>>>>>=>>>?=>>>=>=>?>>?>>=>>>>=>>>>>>>?>=>>>>>>?>=>>?@????@>???>???>????>???????@?@@>@@>>=;;? MC:Z:151M MD:Z:81C69 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:1124:19441:42517 83 3 17077193 60 151M = 17077008 -336 CAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGC ;:;<>@@@@@@@@A?@?>??@?>????>???????>???>??>?>=>?>=>>>>>>>=>>>?>>>>=>=>?>>?>9>>>>>>>>>>>>>?>>>>>>>>?>====>=>>=>=>=>====<====<========<=====<=>>>>>?>?>;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1120:21471:44661 99 3 17077194 60 151M = 17077397 354 AGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCG ?==?>@>>>>>==>=>====>================>=>===>>==>===>>>>>>>>>>?>>>>>>>>?>>?>9=>>>>=>><>>>>?>=>>>>>>?>>>>>?>>??@????>?????????????>??@>????@@A@A@@@?><;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAFFFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKKKKKKFKFKKFKKKKFK UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2101:11282:13088 163 3 17077199 60 151M = 17077303 255 AGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTC =<>???>=>=>=<==>=<>==><==>>==>=>=>=>>=>>=>?>=>>>>>>>=>>>?=>>>=>=>?>>?>>=>>??>?>?????@?>??????@?>???@????@>???>@@@?@@@@?@@5=;@@@??@?A>=@=?@?A;@AA@:>;8<9 MC:Z:151M MD:Z:69C81 PG:Z:MarkDuplicates.1P NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFKKKKKKKK7AAKKKFKKKF9*3=(2'=9/<>?:=;>)<:?>?>>=>?=>1+>=>=><<>3=>>>>?=<98>>>><'<>>>?=)<>;<>>89.>>==::==>===<===<=<<,.<=======8=>=7=<=8<=>9 MC:Z:62M1I88M MD:Z:1A11A0T2A11A11T24A0C23A59 PG:Z:MarkDuplicates.1Q NM:i:9 MQ:i:60 OQ:Z:################################AAF<,7A,,,A<,FKKAFAF,F=<====<=======#=<=<==;===>?>=>>>>>>>=>>>?=>>>=>=>?>>?=9=>>>>==>>=>>>?>=>>>>>>?>=>>?@????@>???>???>?>??>????????>??>==?@@@@@???@@@6@@@0=%A=:8@ MC:Z:151M MD:Z:24C126 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKFFFKKKKKKKKF?=??@9>>>>>>?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>?>>>>>?>??>>?>>>?>><<98>>>>???>>>?>?>?>>>>>?>>>>?>>?>?????>>==??@??84=??9?>>?@?4@(:-;:A?@8=;98< MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.1T NM:i:1 MQ:i:60 OQ:Z:AAFAFKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAAAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFKKKKKA?>===>===<:=<=<=<==<==<=>-;==>><>>=>=>?=>>><==>?>>?=7=>>>>=>>>,<:>?>=>2=82846;>>5<=<;>?59>4=.>;<<=+==?>??1=??>=?<7?>??:;?@61<@?5>@7/*7@@?@@@@/77;# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AA=9=4<8-@A@@@@@@?@=?@@@?)@@@A@@;,=?=<&>????>???>=?@?:?@????@???????@>>>>?>>?><>>>?>>>>?>>>>>>>>=>>?>=>>>>>>>>=>>>>>=>>>>>>>>>?=9>>>;=>=>>>>>>?==<>< MC:Z:151M MD:Z:32C4T113 PG:Z:MarkDuplicates.18 NM:i:2 MQ:i:60 OQ:Z:FA7A7A7,>=?>>=>>>==;>==<=<==<==<>;=<===<<==<=>=><>>===<>?>>?>===<=,<<>>=<>>?,<&<==>;;>=>>>?><=>?:>>>=>>:=>>>>=>>>>=??>??>??,59?==::(&))60*:@-0;<@?><:9## MC:Z:151M MD:Z:55C17A77 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:;<>?>>>>>>>=<=<=<==<==<=>=<=======<===><====><>?>>?=9=>>>>=>>>>>>>?>=>>>>>>?>=>>>?>>>>?=>>>=>>>=>>>>=>>>>>>>>>??>??>???????????:????>????@@@@?@@?>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1107:25702:14301 163 3 17077217 60 146M5S = 17077598 532 CAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGGGTGTGGCAGGAGCC =98?>?>===<;))6=9==1==;=>=<==<3.7:9:>=':5>=>>>=<>>>>>>>?>=;>=%?>=8.<=>;>5??>>?:>9)*2;-5%>0)9*7=8>1???6;?'2:;7);>#################### MC:Z:151M MD:Z:51C84T9 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:A<;88<=A=<@@ABAAA@?7?9@@@@@A@@@A@@;<;@@A@>?=7????@??=:/=?>?>@@@???@?@@@?>???@?>@-@??>?=<@?>>>?>>>?>>>=??>>>>>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>?>5<:< MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1H NM:i:1 MQ:i:60 OQ:Z:###A=<);;-81>;:6,<-9-(>9,71.2=/>>>?<>>8>>?>?>?>>>>>?>>>>><>>>=>>>8>>?>>>?>>>>?<>>>>>>>>>>>>?>>>?>6>>>:>>?>>>>>>>>>>?>?>=<;> MC:Z:151M MD:Z:1A4G7T14G20C100 PG:Z:MarkDuplicates.1T NM:i:5 MQ:i:60 OQ:Z:#######KKF7<<,,A<7<,AA,7FFFA<,<<,A7FA<<,A,A,,F<,77,7A7KKKKFKFAFKKKKKKKKKKKFKKKKKKKKKFFKKKFKKKAKKKKKKKFKKKKFFKKKKFKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKFFFAA UQ:i:37 AS:i:129 +HK35MCCXX160204:3:1124:31203:1784 147 3 17077221 60 151M = 17077059 -313 CTTGCCCTCTCGCCTCTGCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGGGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAAT ###########################@>.;<-8<:8@>A>;=,-,-8:/?<.6:9)*1?@?>)??@?=;:;-/,.+566>:=7>>85?>>?>?>>>?>>><=>><<<>>>>;>>>?>>>>>9>>>>><<=>>;>>>>>>?>==?=>< MC:Z:151M MD:Z:2G6A1T5T39T93 PG:Z:MarkDuplicates.1I NM:i:5 MQ:i:60 OQ:Z:###########################FA,AA,7?@?9:=;<@>@@?;<=?;???>??>????>???>?>>?>=?>>=>=>>=>>=>>>>?>=>>>>>>?>>>>>?>>>>?>>>>=>>>=>>>==>>>>>>>=<<====<===========8===<<===<=<=<=====>>>>???>>? MC:Z:151M MD:Z:44A2C103 PG:Z:MarkDuplicates.1P NM:i:2 MQ:i:60 OQ:Z:A>>>>=?>?==>>=>>>>>>>>==?>?>>>>>?>??>>?>9>;::;>>>>>>>?<;>>=>>@????<7>=,>?>@????????????>??@=??????=@@@7;@@@@@A@@@@<2>(;. MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:<-=6=5?8@?@>@=?@?>???@>???>?>?@??@?:>?>?<>>0>????@==>>>=>>?>>>>>;>>>>:<,>>=>>>=>>>===>>>>>><<8>>>><>>>>>>>>>==8===<<===<=<=<===========>??==;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A<,KAFFAA<,A7A7A<6/2<>=:=74:=(0+(/))'-)1&)&;+4179:1<+9-//5/.'.9(6;7,:9'=1><,==5;82686,+<2,=<==<====>:<3-?;/,9 MC:Z:151M MD:Z:11T2T10C17G1G3A31G36G1 PG:Z:MarkDuplicates.1Q NM:i:8 MQ:i:60 OQ:Z:###############################################FAA,A7<,,,FFA,7AKKAK<<<;?>?>=>>=>>=<====<==<===><===<=<=>==0==<==>><>>>=>>>?>=>>>>>>?>=>>>?>>>>?=>>>=>=>=>>>><>>>>9<>>=>>=>>=>>>>>>?????:????>??????>??6>????>?@8?@?A@?>=::? MC:Z:151M MD:Z:39C111 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKK7KKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKFKKKKAFKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKK7FKKKKKKK@?+@?05+/9.@??83:>.9??:?>?@?????:01<<=?(1=3(*?>-><>=7;<>.76>?>>>>?>>>>:><>=>>>><6==88>>>=6:>88==7<89:=<*=<18881=3:=:<18==;=:=<==9;=9<8>:>;78@; MC:Z:6M1I144M MD:Z:36C114 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:###KKF<,A<,7,,77FKF<77A,@A?;@@@@@@@@?@?@???????@@??;=:?@????@???><:??????>?>?>>>>>?>>>>?>>>>>>>>>>>?>>>?>>>>?>8>>>>>>>>>>>?>>>?>9>>>>=>?=>>>>>>>>>?>>>>>>>>>?>:>?>>??>?;>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:F7FKFKKFAKKKKKKKKKKKKKKKKKKFKKKKFFKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKAKKFKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:5:1109:13210:48740 147 3 17077234 60 151M = 17077146 -239 CTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTA =98;>?@=?AAAAAAAA@@@@?@@@@@@@A@@;@@@?@@??@??????@@???@???@?????@>>??@??????>????@?>??>?>>>>>>>>>>>>>>>>>>>>?>9>>>>>>>>>>==>>>>>?>===>>>>>?>>>>>>>?>?:>< MC:Z:151M MD:Z:34C116 PG:Z:MarkDuplicates.1W NM:i:1 MQ:i:60 OQ:Z:FFKKKKFF>>>>===>=>>?=>>>>>>>>>=>===>=>>=>>>>>>>?>=>>>>=>?>>>>>?>>>>?>>>>=>?>????????????????????????>????@@;:<@@><@@@>@:@?=:@@@@@@@?AAAA.??ABA?B>1>;:>? MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKFFAKAKKAAKFFAF4?;=;,/>4>8>,<5;;8-=>>8'-;'3?;;>>.(<;;<.'.(-;(-)-,;:;;=>>>1<;(8)'=??%8>69#################################################################### MC:Z:151M MD:Z:15T8C27A2T1T15C12A0T3G13C12G18T7 PG:Z:MarkDuplicates.1U NM:i:12 MQ:i:60 OQ:Z:,AF,,AA,FF;=???>?>>>>>>>?>??>>?>9>?>>>8=>;>><>6?;;><>?>?>>>>=;>>>>?>>>>>>>>>86==>7?>>>>?>><>>>>>>>>>1?>7:)62<<<93>???=;????9?@39>>A@@,>9=######### MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1V NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFFKKKKKKKKKKKKKKKKKKK7FKAKKFK7K??,;>9;(,+<8=>==>><>?>><>8;>>+>&>;0;<:8=>-=,98??/3&.+84>;6>5?-:88@=87)(/4>89)9>???<>>>???@@@@@@?@=7@>?@A?@A@############################ MC:Z:151M MD:Z:4C146 PG:Z:MarkDuplicates.1H NM:i:1 MQ:i:60 OQ:Z:AAFF,FFK,AKKA,,,F><>5,8-=>7&;<>?>>>>>>=+3=;>=>?>><>>9>><7>>=<>>=>>>>;>?;>;,8-,(=9>=))0=24>################################# MC:Z:151M MD:Z:7C76G30 PG:Z:MarkDuplicates.1W NM:i:2 MQ:i:60 OQ:Z:AA,FFKAKKAK<,A,FK<,FFKKKKKKKKF,>>?>>>>?>>>>>???>>>?>?>?>>>>>?>>>>?>>>>>>>>>>>?>>>?>>>>?>>>>>>>??>??>@???@?:???=??@??????????@?????????@??@A@@A@A@@@@@@@@@@@AA9@@>A@?:=@@>?><96> MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.17 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKFFAAFAFF<<??@>>>>===>=======>:<<=====>======>===>=>>=<====>>=<>>>=>>>>>>>>>>7>>.*=9>8=97<9><9098>>;:;>>>>;>28>>>>>?/..*:=>:9060<<8&-:(?(>@#################### MC:Z:28S123M MD:Z:6C104T11T2T1G22 PG:Z:MarkDuplicates.1R NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKFKFKKFFKKKKKKKAKAKKKKKKKKKKKFKKFKKKKKKKKKKKKKFFKKKFKKKKKKKKKK7KK,,FAFAF7??>9==>=><===>===>=<==>>==?>=>>>>>>>>==>>>=>>>=>>>==>>>>>>>==>>=>>=>:=>>>=>>9>9>?>88)=?>??>?????=@>??@>?@?@>?,>/)>@8:9<5;/=-=/,>/*9>::== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKFKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKAKKKFFKKAKKKKK7AFKKKKKKKK,FFFKKKKKKKK>>?>=>>>>?>?>?>;>>>=<=>=?>=>=:=3>7>>=>>>>4??=?@?:???;6<@????>??=6=:9??::8==?8>???<)/)0:?@9?>>A;=>-:9<(@;849 MC:Z:151M MD:Z:1A147T1 PG:Z:MarkDuplicates.1C NM:i:2 MQ:i:60 OQ:Z:A,AFAFF@>=>>=>======>=<======>=<===>====><===<>>==>>>>=>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>;=<>>>>>>>>>>9>>>=>>>>>>?>>??>??>???8??7>????@?>??>??>@?:@@?@@?>=;:? MC:Z:151M MD:Z:3C147 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?<>??>>>>>>>??;>>>>=?>?=====>>>>>>====>>>>>>>>==>?>>>>?>>>>>>>>>>>>>?>>>>>9>>>>>>?>>>>>>>>>>>>>>><>>>>?>>>@??@?@??@??;?????@??????;=?7;=???A@@@@>><:;< MC:Z:151M MD:Z:15G135 PG:Z:MarkDuplicates.1G NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKFFAK7>??=>>>====>=<======>=<===>====><===<===<=====>>>>>>>>=>>=>>=>>>>>>>>>>>8>>><<:>>>>>>>>>>>>>>=>>>>>>?>>>>=>>>???>?>???@9<4?4?@@@@@:>;;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKAFKKKKKKKKKKAFFKKFF7<7F7FFKKKF7AFKAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:2212:21004:54295 147 3 17077269 60 25S126M = 17077107 -288 CATGGTGCCGTCCAGTCTCTACTATGAGTTGAGGTGCCTAGAACGCTTAACAATAGTGTACAGGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAA #################@;@.).=@@A@@=<0?@?@=6-?8-9,???>:.0,-90/?7>;8>*<:;.???@????>???>><>>>>>:>>7>>>>><>>9>>>>=<>>2.>>>>>>>?;>>>>>6==>>>>>>>>>>=>>,->>??<>=:; MC:Z:151M MD:Z:18A11T1T4T88 PG:Z:MarkDuplicates.1U NM:i:4 MQ:i:60 OQ:Z:#################FAA,,,@>?>?>>>>>><=<======>=<===>====><===<===<==>=<>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>??@????????@?>?????>?>@????@@@@?A@>>=;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:1:2119:11150:46929 83 3 17077271 60 151M = 17076974 -448 GTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGTCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCG 7;:;?==?(2>=?7??@???@?????@=>??@???????????@>>>>>>>>>>>>>>>>>>>>>>>>>>?>9>>>>>>>>>>>>>>>2>?>>>>>>>>>?>>>>>>>>>>>>====>>>>>===>=>>>>>??>=>>>>>>?>>???=5> MC:Z:151M MD:Z:88G62 PG:Z:MarkDuplicates.1G NM:i:1 MQ:i:60 OQ:Z:AFKFKFFA,7FAA@?@=.<8@?@@A@@?72(>0>>=>)?@????>???>???>>>>???>??>????==9=>=>;>=;=>8><>==>=>=>=>=>;>>=0=>>>>=/7?>>>>=>>=>>=?>>=>==<=>====<==<=<>=<=======>==???<7= MC:Z:137M1I13M MD:Z:22A128 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:A,FKKKKKA,<<<==?>>>>?><======>=<===>====><===<===<====<===>====<>=<===>>>>;>>>>:>9>>>>:9>>;>:>>>>>>>;>=>>>>>>?=>>>=<>=>>=<>?>??@?>??6??>??@>=9;@@/@AA@?@?=<6:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:AAAFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKAFKKFKAKKKKKKKFKKKKKKKKKFKKKKFKKKKFFKKAFKFKKKKKKK7AFKKFKF<?;1>=@2>6?:0@@:-9=7>,?<,9-8,;)6?>:489&;&9?8.>>>>;<9(>;<><'>6<%4?>2<198=;>>5>7=/=5'/496;6'4=>:86>>;;>>=;<:><=>>>>=>?==7>===<=6??;><9;>>>;>= MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1D NM:i:1 MQ:i:60 OQ:Z:A,,7KKA7FAA7A7AA7KF<,AA7F,FA,<,A,A,7KF<<<7,A(AKA7KKKKFFA,KFFFF,KAF(>>?>>>?=<======>=<===>====><===<===<====<====>>>>=>>=>>=>>>>>>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>>>@????????@?>??>??=?=@?????@@@@A@?@@?>7;<@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKK@A@@@@A@A@A;?????????@???????????@???@????@?>>>=>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>>>>>>>>>?>>>?>>?>?>>>=>>>>>>>?>>>?==>>?>??>=>?>>>>?>>>>?>9?>?>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 NM:i:0 MQ:i:60 OQ:Z:KAKKKKKFKKKKKKFKAKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2114:28422:55930 163 3 17077279 60 151M = 17077474 346 GCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAA =;;?=?=======>=<===>====><===<===<>>>>=>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>>=><>>>>>>>>>>>>>=>>>>>?@????>??>?>?@????????=?>?????>??@@@?@@@@@@A@?@@A?;@@@><99; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFFKKKKKKFKKFKKKFKKFFKKKKKKKKFKKKKKKKFA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2113:21552:53908 83 3 17077279 60 151M = 17077098 -332 GCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAA #>;2@8@@=@@?A?????=>*??@????>>?=>?=>>>???>>>>=;>>=>>=>><4>>>=>=>9>>>==>>>;:=>=>>>>><>=>>>>>>?>><>=>>=>>=>>><===<=>=<<=<==<=<>=<=======>=<==>>9>>>?<>>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:#AF7A=?>>=====>=<===>====><===<===<;>>>9;=;;8;>>=>;5>><;>=>>>>>>=<6;<><;;>>>=8>/>>>>><>=<<>>>>@????>?>>???@>?=9/=><@>>=?>?@@?@?@A@?@=@A:?@@7@;::9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAFAAAAFKKKKFAKKFFKFKKKKKKFFFAFKAFFKKKF7F,FKKKKFKKFFKKKKKKKKKKKFKKKKKFKF7,AF===>?>>>?>?>>>>>?>>>>?>=======>>=>>>>>===>?>>>>>>>>>>>>>?>>>>=9>>>>>>?>>>>>>>>>>>>>>>>>>>>?>>>?>>?>?>??????????@?????>?=?=>????@???@A@@@@@?;@@?@><<:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:AFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKFFKKKKKKKKKKKKKKKKKKFFKFFKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2118:27630:55825 147 3 17077281 60 151M = 17077067 -365 CTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGT ?:@82:@@@@;@1@@>8??=*>=>?7>>?<>???>>??=????:4>>=??>9>>>==>>>=>=>;>:,=>;>>>>><=9'=;8<6>>=>>=7>>=>>>=>?>>>>==;<=<>=<=======>=<====8=====>??>8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KA<<,7KKKKAA,KK<>?>?>>>>><>>>=>====>>=>>=>9>>>?>>;;?>>>>>>>>>>=>>?>>=8;9>>58<;?9>>>>>>>>>>>>6<>>>>>?>>>?<>?>???@>?????;>?>???=??=1-=:>>==????>?@@@=><39> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W NM:i:0 MQ:i:60 OQ:Z:AAAFFAKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKFFKKKKKKKKKKKFKKKKKFAFKKK<>=<=<;83&>>=7$&$$$$$$0$2$$%&%)/4--/'*.><%;)=2/&>>)//(/%<$2/>123- MC:Z:151M MD:Z:12T1T5A15T3A7C4A22 PG:Z:MarkDuplicates.1P NM:i:7 MQ:i:60 OQ:Z:############################################################################A(A(FA7KAFKKKAKAF7<,KFFF(,((((((,(<((,,,,,A,,,,7,KF,<,F7,,FF,,7,,,A,7,A,,,, UQ:i:19 AS:i:41 +HTL2KCCXX160412:6:1108:14286:24690 99 3 17077290 60 151M = 17077346 207 TTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTAC ?>>?>?>===><===<===<====<========<==<==<=====>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>>>?>>>>>>>>?>=>>>>?>??@?????????@?>????:??????@@@@@?@?>;;;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2115:15016:15971 163 3 17077291 60 151M = 17077479 339 TAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACCGGTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACA =:8<=?>889>=><===<==<<===.7;========>>=>>=>=;<>=;<>>>7>>>>=;>>>>>>>>>>>>>>=>>>>>>?>>=>=<>==>?@???8>?==>???????;@@79@88<:=@@@@@?@@@=<;7? MC:Z:151M MD:Z:105A1T43 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AA>???>>>==>=<>==<====<====8<=>=>>=>>=>>>>>>>=>>>9>>=>=>>>>>>>>;=>>>=>=>>>>??@????>??>???@????????=<28:<>?.=><@@??@??@@-@)>.<78@?A@@??/6;@=AAA4B####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKAFKFKFFKKKFFFKKKKKKKKKKKKKKKKKKFKKKA<<7<>?>>>>>>>>>>>?>>>?>>>>?>>>>>>>=>>>>>?>>>=>$<<<==>?>>>?>?????@???????>?@???@??@?@=??????????@???>=?@@>=@A@@@A@@@@A@@@@??9@@=?@=AA?>@AB@?AA=6><4>; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKFK(FFFFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKFFKKKKKKFKFKKFAFKFFAFKKKKKKKKKKKKKKFFFKK>>@@>?@@<@?;@@?6;(>=>?@?<>/>??????4?=?:>?;?@?=??>>?=>>>?>9><.>>>?>>>>>>>>>;?>>>>>>>>>?>=>>>=8==>=>>>>>>><>>><>>==>>>>>=??>=<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:77A77<,F>?7@????>;@????8<<>??=??????>?:>>>==>>>=>=>=>>>>><=>=>>>>>?>><>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>========>=<====8====<<===<=<===<=>=====>>=>???>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:??>??>???????=<=?:<>>==>>>=>=>=>>>>>>>>>>>>>>?>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?==>>=>>==>=<====8====<<===<=<===<=>====>>>=>>?>=>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:?=???=>:>==========<==<==<===========8===<<>>=>>>>>=>>>>>>=>>>>>>;>=>>=>==>>>?>>>>>>=>?>=>>>=>=>=<>>>>>>>>>?>>????:?<=>;=:7=>?>???>?@>??=@@@??@@??97<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKFKKKKKKKKKKKKKFKFKKKKFKKKKKKKKKFFFKKKKKKKAKKKFFKKKKKKKKKKKKKKKKKKFAF?>==<========<==<==<=========>>9>>><<>>>>><>>>>>>>>>=>>>>>>?>>>>=>>=>>>?>>>>>>>>?>=>>>>?>??@?????????@?>????:?????>????@>@@@?@A?@@?@@@?A@@@A@?<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKFFKKKKKKFK UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:1222:28757:53522 83 3 17077308 60 151M = 17077115 -344 ATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGG ><:;>?A?@?A@>@@AA@5@>>@?>?@@?@??>>?7??????@??>???????@????>>>>?@>>>?>>?>?>>?=>>??>>??>>>?>?>>?>??>>>??????>>>>?>8>>>>>>>>?>?>?>>=??>>>>???>?????>@???=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L NM:i:0 MQ:i:60 OQ:Z:4:=7=>><5:*.5<=<-6<>?>99->=9<0>-9+:=: MC:Z:151M MD:Z:5T11A4A10G19A3A2T13T10A29T3 PG:Z:MarkDuplicates.1N NM:i:10 MQ:i:60 OQ:Z:#############################################################################################################AFF,F7?:???>>???>?>?>??????????????@?>>>=>>=>>=?>>=>>>=>?><>>=>>=>=?>:>>>>>>>?>=>>>>9>>>>==>>>==<===<=>=======<====>=>=>==<>>><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKFFKKKKFA,7FKFKKKFKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:2:1204:14966:57688 99 3 17077315 60 151M = 17077405 241 GTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTGTTTATCCAGCGCATTGCAAGTTCTTTCTACAACTTTCTTTTCTATAGGGTTTTTT >>==@*==>?>>>>>>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>>>>>>>>>+,9>?>>?>?>>?>>>>>>>>?>>>?>>>>>>?9>>>=)6>>@>?)>@?:???5('??@@????@??@A?@@)AA@AA@@?><:9? MC:Z:151M MD:Z:95T6A7G0T25A13 PG:Z:MarkDuplicates.19 NM:i:5 MQ:i:60 OQ:Z:AAFFF,FFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,,AKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKA,7FFKKK,FKKKKKK7,,AKKKKKKKKKKKKKKKKKKKKFKK,FKKKKKKKKKKKK UQ:i:66 AS:i:126 +HK35MCCXX160204:2:2204:6228:72016 147 3 17077316 60 151M = 17077024 -443 TCCTGGCCTCCCACATCATGCCTGCAGCGGTGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCGGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTC ##################?<8*=(*A@9;(.0=77.'.4.8?2>@@96:>?><<6,:=>5./9.2*?@>>'6?.7/@>=8?5;;(;1??->=<9>>>;<;>>?377>>>;;<>;5>;==9>8+==>4<5;>>;>>>+<7?>>10< MC:Z:151M MD:Z:9T20G34T85 PG:Z:MarkDuplicates.1F NM:i:3 MQ:i:60 OQ:Z:##################AA<,<,,FKFA,,7<<<,,,<,AF7FKFA<=6,;6>=<>==;>><>>219;=7/486:>:7>>;>=>3>;9;==:==>>>?9>?>?>>8,<=48??>==;>=>????3=-;:77=@:;8=-7=;8A@74A############################## MC:Z:151M MD:Z:134A13C2 PG:Z:MarkDuplicates.1D NM:i:2 MQ:i:60 OQ:Z:AAFFAFFKFA,F======<========>==8>>=><>>>>>>>>>>>>><,:>>7==>?>>>>=>>=>>>1=>==;=<>;<9>=<2=;==>==??????<<99>=;?8;.>>>>?8???>@??>@84?:8@9@>@=@?)A=A?55>@AAA?@<#### MC:Z:151M MD:Z:132A18 PG:Z:MarkDuplicates.1K NM:i:1 MQ:i:60 OQ:Z:<=??===<==<====(;=====8====;====>>>>>>>>>>>=>>><9>?>>>>=>>=>>>?>>>';=>;>>>>>=>><*248;>>?,3==????:?????>?????>???>?@>?;;?>@??*2@A@>>>@@-@1>=@.*+69= MC:Z:151M MD:Z:17C50T17T6T35T15T5 PG:Z:MarkDuplicates.1Q NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKK,>;==?@@?@?@?>????????6???>>???>?>?>?????>>>>>>>>>?>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>><=>==<=<===<=>=======<====>=>=>===<>>>>>=???>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FAKKKKKKKKFKAFKKKKKKKKAKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2122:16305:67076 147 3 17077323 60 151M = 17076863 -611 CTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTA ?:9=?>@@:?0*8-@@?;@?7;%>/>?>?>>>?>?4???:=>=>???>@???>:?==??=?>>=>>>:2?>=>:=>>=<=?>=>>>>>>;?:3>>>>78>>8:=>>>=>==>>=>?>==:===<====>=>=<;==<=====4>>7>?=:= MC:Z:53M1I97M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FFFAF=<=25>=<>>>8======8=8<16&==========1===<===>>=?>>>==>>=>>>?=><=>=>>?>=>=<>>=>=;>>>>>>>>>?>=>>>18>5=>>=>>>>==>0>=?@5??6>006190>@>=?@???>??9?@<;>@?>=### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFF<8??=;>>>>?>>>?>8==><<>?>>>>>>>>>>9=>>>8>>>>?><>?>>==?=>;>>>>>0;=?6'>>>;6=90:?9>>>;>>>>@>:(<>0=?>.59>1/>>6?@6?=2@???@=?>>>====8==<<0:<7.97.6=9====>:/29;:/.386<=>+7>?7=;>>>7>8.2;=>>2/9=><<=>?><=>4;.5>.::????.?*3/...@@?@@@>>?######## MC:Z:151M MD:Z:69T44T29T6 PG:Z:MarkDuplicates.1P NM:i:3 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKF,FF??@?@@@?:??=>>???>?>?>???????=>>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>>==>>>=>=>=>==>=======<====>=>=>===<=====<===>>>?>???>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:#AKFKKAKKKKKFKKKFKKKKKKKKKKKKKKKKKFFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2119:14489:32144 83 3 17077332 60 151M = 17076973 -510 CATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCG ?;;=>?@@=@@;@??>>???>?>?>??????????????@?>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>>==>>>=>=>>><>?=======<====>=>=>===<=====<=====>?>?>>?>==8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1117:20182:10046 163 3 17077333 60 151M = 17077732 550 ATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGT ==>>=?>====8===;<=>==><==>>==>>>=>>>>>5?>>><=>>=>:>=>>>>>>>>;>=>>8>6>>/;>7>>???:>@>>=???:????9>?>?>?>>??><=>@07??@??>?A@>@@?>5?@=9=;6<33=??;1@@0;13< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKAKKKKKKAKKKKKKFKKKKKKKF7KKKKAFKKKFAKFKFKKKKKKAKKKK7F87==:@@>@@@A@@@@@@@@??@?????>???@???@??@?@??@????????@??>?>>>>?>??>>>?>>>>?>>>>?>9>>>=>>=>?>>>?>>>??>>>>?>==>=>>?>?=>?>>;>=====>>>>>??>?>>>>>>9>@A<>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C NM:i:0 MQ:i:60 OQ:Z:F>==>?=>>>=>>==>>>=>;>>>>>?>=>>>=>=>>>>>>>>>?>=>>>>9>>>>?>?????>???>?@>>?>???>????@?@?@?@@?@@@@@>@;@@>@=@>A@@?5<;<9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:=========8=09=4;,7%;;==>=====>>=>>>?>><<=;>>7>=>>>>>)=>>>9==>>?>=>=>>9>9>>>=>>>>>=>??>?@>??>>??>????@?@?@???>>????>??@@@AA@A@@@@@@:>;<@?@>;:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKAK7AF>>91@>>===6==<==>>;=>==:(>';9>=>>>5/==>@(7.(/8==>=>=>=><>:=?>>><=<2);<><><5;02)=:62:*2,-+,<5=;0><=2=888589+9>>??=?/ MC:Z:151M MD:Z:13G65C62G8 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:##################################AFKFA7:=7==>=>;>>)<>>><>>>>?>>>?>>9>.16(=8=8>(<>6;;>?++1&8'<69==?>;>>+95>>=9#8>>='<><):+=9+>=<9;<-;9=;2/+8>@<>>>68?6+995<))9=??####################### MC:Z:4S147M MD:Z:40A16A1T22T47T7G4G0G6 PG:Z:MarkDuplicates.1T NM:i:8 MQ:i:60 OQ:Z:=?>>>>>>=======<======>====<==<===>=====>>=?>=>><>>=>>;>>>>>>>>>?>=>>>>8>>>>>=>>>>>=>>>=>?=>>=>>>=>>>><>?>@?????????>??????@?@??????:?A@@@??@@:>;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:,AFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF@?A@A@A?A@>@@@@@@??@@?@@@?@@?@@?A??>???>?@????>??>?>@?>???????@?>????:>?>>==>>>=>=>>>=>?>>>>>>>=>>>>?>?>?>>>=>>>>>=>===>>>=>>==>==8<>=<==<=>>??;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:KKFKKKKKKKKKFKKFFKKKFKKKKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1124:12591:16692 99 3 17077349 60 151M = 17077384 186 CCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGAAGATGTGGTA ><>>>?>>>>>>>>>>>>>>=>7>>>>>==>=?>>?>>;>=>>>?>=>>;>>=>>=>>>>?>>;>?>>>>=>9>>>>=>>>>>>>>>>>??>>>>?>98?>>?@?@?@9?>?<6999<<0=:=.6,;2=4>,:@@=@?6<>>=;:9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKK<>@@?@?B??AAA>@?@<8@@@?@@@@@@@@@@@@@@@A?@?:???>???????>>>>>>?>>>>>>=>>>>>?>?>??>>>>>>>>>>>>==>?>?>>>>==8=>?>>=>=?>>>??=:>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:FFFKFF>??>>>>=====<======>====<==<===>==========<==7==<=9=>>>>>>>>>?>=>>=>9>>>>==>>>>>=>>>=>?=>>=>>>=>>>>?>?>?>>>:>????>??????=?@/?=;@?:/.8>@?>@:?@@?><;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKK7FFAF4;<@7<=2*@<998>/(??@?@<.5@9>=@@='@@@=>@@?@@???@???;@????@?:?=??>@???@?>?=?>>>>?>>=?>>>?>>>??>>>>:>>=:>>>>>??>?>>>>>>9>??>>>>>?>>>>>>>@@<=:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:<7A,<7AA<=<;?<>2=1:>*'=;5/*2*=><=6-0>>4=5/>===>>7>=8>><=?>==:'':=4><<<)?>?=;;=>6>>=6*5====>=>======8:;;:=;:(=<==<=7=<>=>?>?>?> MC:Z:151M MD:Z:2G4A15C22T4C35T7A36A18 PG:Z:MarkDuplicates.1Q NM:i:8 MQ:i:60 OQ:Z:##############################AFKKFF?@@@>@?@??@@===@??>???>?@????>??=?>>>=>>>>>>>?>=>>>>9>>>>==>>>=>=>>>=>?>>>>>>>=>>>>?>?>?>>>=>>>>>=======>=>======8<>=<==<==<==<==<>=<==<>>>>>??;?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:KKKKKKKFF(7:3773=4,5<=%,;=9+?9&6(5>0><,5<957<8=8:999>,577=>5(9=):==>=@?+5<>;-<3?>)2?58;;->>;81=-(/,+:377*98A?-)=-,+9(2->?8;;..9?@3(5##################### MC:Z:151M MD:Z:20T40A17T14T13A19T8 PG:Z:MarkDuplicates.1I NM:i:6 MQ:i:60 OQ:Z:A,<<>??@>===<=;<===>>==>===>?=<=>>>>=>>?>>>>>>>>>?>=>>>>9>>>>>=>>>>>=>>>=>?=?>>???>????@?@???>>>?????>??????@>@?@@=@@69@@?@@?@@@@??@@@A@@<@AAAAAAA@??;79? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFKKKKKKKKKKKKKAFKFF=>>>>>>>>==============<>===>>?>?>==>>>>>>>?>>>>>?>>>>=>>>>>>==>=>?>>>>>??>>>>>>?>>>:<>>>>>>>>>>?>??@@????@??;=???>=???>??????@?@@AA@@4=@?<=<:5= MC:Z:151M MD:Z:53G97 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKFKFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKAFFKKFAFKKFFFFKKKKKKKKKKK7AFA:>,????=2???>:?>.@:@>>>>??=9+?@>>>>>>5;;<>>><%>>>>>>??>>>=>??>>>>>>?>>>>>>9:>><=>>=>569?=:=<;7+>>>?>>>>>==>>>?>>>>>>>??>>?>?>>.>??>>=/ MC:Z:151M MD:Z:11A39G10T88 PG:Z:MarkDuplicates.17 NM:i:3 MQ:i:60 OQ:Z:AF<,77A7A77(KFKFF8A>77:<@@@=?=='.916-7=>=&8.2,=?):6>>;>??>>,;,=::>1><8>>>>>;>>?==:=8;<7>>>9=>>>>=<>>>?>>>=>97>?>>?>>>>>>>?=?=@< MC:Z:151M MD:Z:16A21T9T1G4T20T74 PG:Z:MarkDuplicates.1W NM:i:6 MQ:i:60 OQ:Z:#A,A,<,7<77FA,,,,F<<<,7<??9@>(616<70=;/??@?=?=??????>9????>8>=09<<=;??>9/=<7';(>>;>>>9.>?>;=8?>5<6,>>:>>>>=>>>>>=>?=>>>>>>=?>>?=?>>>>>>>???;<=< MC:Z:151M MD:Z:11A10A24G103 PG:Z:MarkDuplicates.1G NM:i:3 MQ:i:60 OQ:Z:####FAFAFAA,F<<,7<,A,F;=?>==>===<=<>===<==<==>==>?=>>>>>>>>>=>>>>>>>?>>>>>>>>>>>=>>=>?>>>===?>>>>>=>>>?>=>????>???>@>?>?@>???@???>???=>@@@@@@@@>>@@@?@A??@??:>:AA:A@>=8:=# MC:Z:151M MD:Z:46G104 PG:Z:MarkDuplicates.1N NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKFKKKKKKKKK;<=>=>=><====<==<=<====><=========<=====>>>>>>>>>>>>>><>>=>?>>>>=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>8=<>>?>>>=>>??>??????@?>????>?@>???@????@@?@?@@<><;;= MC:Z:151M MD:Z:43G107 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1117:27235:56299 1123 4 57194286 60 151M = 57194316 181 CCCACCCACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATA >;<=>=>=><====<==<=<====><=========<=====>>>>>>>>>>>>>>=>>=>?>>>>=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>?=>>>?>>>=>>??>??????@?>????>?@>???@????@@?@/>@?><;;9 MC:Z:151M MD:Z:43G107 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AKFKKKKA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1117:21704:36979 163 4 57194292 60 151M = 57194387 246 CACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGC =;:=<=========<=>>>>>>?>>>>>>>>>>>=>>=>?>>>6=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>@>???@???>????>??????@?>????>?@>??@A@@@@@@?@@@@?A?@@A@=<88: MC:Z:151M MD:Z:37G113 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2217:7953:49654 83 4 57194293 60 151M = 57193393 -1051 ACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCT ><<=1;@@??@@?@>???<0>5???=>??>=<<;???>@??>>=>=>>=>=>>=>?>>>>>>?>=7>>=>>>>==>>>>>>>>>>?>>=>?<>>>?>>==>>>><>>=<==>=<====<=>===<>====<=<====<==>>?>=?=?=?> MC:Z:151M MD:Z:36G114 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:7F3??>9/837-2>@<>@8@6@@:0@?????9;>?>?7;5(-7;;->??>=>>=*:+??=>>?>?=='=>?>>>>=>>>>>>>>;>?>=/=+:>==,>?;5>=>>>>>>>7>=>>7>?7>>?0><=- MC:Z:151M MD:Z:25G9G115 PG:Z:MarkDuplicates.1B NM:i:2 MQ:i:60 OQ:Z:##################FA7AA<7,<77,7FFFAFAF7FFA7KKKKFFA?8?@=@9@@@@@@?=????????@@?????@@??????@??>??????????>?@?@?@@??>??>>>>?>>>=>>>>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>???>??>>?@=<<< MC:Z:151M MD:Z:6A21G122 PG:Z:MarkDuplicates.1S NM:i:2 MQ:i:60 OQ:Z:########FFKKKKKFFKA<<@7@@@??@;9,,<@?@@@=@,7@:???????>:?>?@??>?>?>99???>?????>???>>?>+>>>=>=>=>>>>?>>>=<>>>>>>>>>>?>=>>>>=>?>>;>?>>>>>>>>>?>>><>>?><>?>>>?>>>@>==>< MC:Z:151M MD:Z:27G123 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:A<,<,7A7FFA7FKKAAKA<,,AKKKKKFF,7KAKKKKKKKF87.@1@@>?==91=@:>-;<>?>?=?=>5>9@?>???>?=?<><=,;>>>><>>;=>=><==4;?>>==>>>;=<=>=>>?>=>><>=>;68&=?>=>>=>=====;=<==>=<=>===;==<=====<>>?>=>= MC:Z:151M MD:Z:2G17G86A43 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:#####AKKFF<7,A,KKFFAFA7><>>=>=8;=9<>=.====2,<=96=6;==><=>9=>=>>>>;>>>>>=>=>>>==>=>=1<8>:1>:9;<=00=<388<<>>>>,>0(=><=>;8=:/,.=1);8=..)(..(8.=?:???=>@@@@4:@/9?=9######### MC:Z:151M MD:Z:15G134T0 PG:Z:MarkDuplicates.1K NM:i:2 MQ:i:60 OQ:Z:AAA,57<;89-.<=??@AABAA@;@@@@@@@@@@@AA@@@@?A=@?@@@?@;=8@;??????>??@?????????>??;>?>>>??>>?>?>>>>>>>>>>>>>>>>=>>???>??>>>?>>>?>>>>>>>>?;?9=< MC:Z:151M MD:Z:14G136 PG:Z:MarkDuplicates.1C NM:i:1 MQ:i:60 OQ:Z:KKKFA<<,,AAAAFKKKKKFAKKKKKKKKFKKKKKKKKFKAKFKKKFKAKFKKKKKFFKKFFFFAF7KAKKKFFKFKKKKKKKKKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFF>??<:4//.>>=>>>>=:->>>8?><=>>><>>;>=>><>>>;>=>>><<6>=>>><>?>>>>>:-<>===>>8).>?8;=<6 MC:Z:151M MD:Z:11T2G15T10A103A3 PG:Z:MarkDuplicates.1R NM:i:5 MQ:i:60 OQ:Z:#######################AAAKAA<,,,<<,,,7@?@@?@@@@??>??>?@??????@?????>????>>???????>>>?>>=>?>>>>?>>==>>>>=>>>=>>?>=>>>>=>?>>>=?>>>>=>=>>>>=>===>=<=>===>========<=======>?>?<>= MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKKKF@>?@@A@?@?>@@@@??>?>?>?@??????@?????>????>>???????>>>?>>=>?>>>>?>>==>>>>=>>>=>>?>=>>>>=>?<>==?>>>>=>=>>>>=>===>=<=>===>========<=======>?>?<>= MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KFKKKF>@@???@=8>@**(*9@@>:2<8>@:?=??>=9;7;>?=*;>?????=?=<)?>>==0<>>>8>;===::))>=89>;7>=>=9<8=?>>=5?>>;;:)=7==75>=>7>=<<40==:==;=======>:*><:>= MC:Z:151M MD:Z:12G138 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:###F<<=?;@AA@@?@@@=@@?@@@@@@?=@@>?::@?>>?<>????>>>>>>>>>>=>>=>>>;0>>>>>>?>>>>>>>>>>>>>=>=>=<>>>>>?>>>=>>>=>===>>>>>>>?><:; MC:Z:151M MD:Z:12G138 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AKKF<,FF@AAAAAAB?@AAAA@@@@@@?@@>??@@@@@A@@@@?>?????>??????????@>>>?@????@???>>?>>>>>>>>>?>=>>>>>>?>>>>?>>>>>>>>>>>>>=>>>=<=?=>>?>>>>=>>>=>===>>>>>=??==<; MC:Z:151M MD:Z:11G139 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:FFKF<?>>:>>?>>>>=>>>>>><,>=?>>>><4?5,,;;>>?>>/=>77>>>>>>>>?>????????<8>?1=;?;<=*;>>9;73<:=<;?>??>############################################ MC:Z:5S146M MD:Z:10G117A12A9 PG:Z:MarkDuplicates.1B NM:i:3 MQ:i:60 OQ:Z:<<=>>>>>>>>=>===========<==<=>====<=>=====<>>=>>=>>>>>=>>>>?=>=>?=>>>;>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>??>?>??@?>?@???@>???????>?>??@@@?@??==;;> MC:Z:151M MD:Z:10G140 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2112:23967:16428 1123 4 57194321 60 151M = 57194450 280 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAAT ><=<=?>>>>>?===========<==<=>====<=>=====<==>>==>>>>>=>>>>?=>=>?=>>>?>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>>>>?>??@?>?@???@????????>?>?>?@;@@>@??>=:;? MC:Z:151M MD:Z:8G130A11 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:24403:16234 99 4 57194321 60 151M = 57194450 280 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAAT ><=<=?>>>>>?===========<==<=>====<=>=====<==>>==>>>>>=>>>>?=>=>?=>>>?>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>>>>?>??@?>?@???@????????>?>?>?@;@@>@??>=:;? MC:Z:151M MD:Z:8G130A11 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:84 AS:i:141 +HK3T5CCXX160204:2:2103:16863:31336 99 4 57194328 60 151M = 57194901 724 TTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGA >>=>8?>>>>>>>>>>>>>>??>>>>>??>>>>>>?>>>>>>>>>>>>>>>?>?>??>>>>?>>>>?>>>>>>>>>>?>>>?>>>??=>?>?>>>?>>>?=@?>????@??@@@?@;???????@???????@@??A@@A@@@@@?=79## MC:Z:151M MD:Z:1G149 PG:Z:MarkDuplicates.19 NM:i:1 MQ:i:60 OQ:Z:AAFF@<).();7>56-6=5)..6?@:6?7.(5-)998,.:,-9.95-<8>5:.'.9.<*=69>'7:;6./(-->8(588&++6=1&>1+9=>=>78,5,'9+./=++(,<7===(=,8;;>9>=48>><;)>>>>>?>?>@;>> MC:Z:136M15S MD:Z:5G6G0A1T9A0A13A34T6T2A20T10G11A21 PG:Z:MarkDuplicates.1E NM:i:13 MQ:i:60 OQ:Z:######FFKFAF<,,,,<7A<<,1/*(=>:97>8*2;==:*2=;-8?>=8==2:'&(48=55/(.*53<>>;:>:<1:*;/=7;=968(<;>:;;'>7=;5'<18).=>=?7<=?=8+8;8=><==1<=<-/)=<=<<=<5;*=0><=>>;9:?):>@> MD:Z:46A1T38A5A30C26 PG:Z:MarkDuplicates.1Q NM:i:5 OQ:Z:####A7>>?@?>>>>>>??>>>>>???>>>>>?>>>>>>>???>>>>>?>?>??>>>>?>>>>?>>>>?>>>>>?>>>?>>>??>>?>??>>>>>>@?@??????@??@@@?@@@@@@??@@?@?????:???@?@A@@A@@@@A@@@A@@?<:9? MC:Z:151M MD:Z:124A26 PG:Z:MarkDuplicates.1H NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HK3T5CCXX160204:3:2223:10531:44802 147 4 57194337 60 151M = 57193980 -508 TTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGG ><9<>?<:>>B@A?3<99?=@@@@@A>@>@@:;@=@=???@?=@?@@>???@????@??????????@???@????@?=@?@>??>>>>>>?>>>>>>?>>???>?>=>>?>>>?>>>>>>>>>>>?>>?>>>>>>>?>>>?>?>???;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:FAF??>>?=>=><=?=====<=====<===>>=>>>>?=>=>?=>>>?>>>=?>=>=>>>>>>?>8>>>>=>?=?>?@??????>????<>>??@?>?@?8;>?>??????>?>@>:@@@?;@7;A@?@@@@@@?A@??B?A/5>?=>;-= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKFKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKAFKKKKFKKKKA7AKAFKKKKKKKKKKAKFKAAA<>>????>>>>>??>>>>>>?>>>>>>>>>>>>>>>?>?>??>>>>?>>>>?>>>>>>>>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>?>@?@@???@???@???????:???@??@?????@@A@@@A@A@@@@@?><98> MC:Z:151M MD:Z:118A32 PG:Z:MarkDuplicates.1S NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1219:20466:25552 163 4 57194345 60 151M = 57194474 280 TTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAA 9>==<=>=====<=====<=====<====?=>=>?=>>>?>>>=>>>>=>>>>>>7>=>>>>=>?=>>>?=>>>>><>>>>=>=>>??>?@???@????????>?>?>09=?=>?>???9?@@@@@@@?@@8?@@?@@?@@=<98> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:<?@@@AA@@@@@@A@@@????????????@?@?@@????@????@???????>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>???>??>>>?>>>?>>>>>>>9>>>?>>?>==>>>>?>>>?>?>>>>>>>>>?>>=>> MC:Z:151M MD:Z:115A35 PG:Z:MarkDuplicates.1F NM:i:1 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:1219:7405:39423 99 4 57194347 60 151M = 57194615 419 CTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGG ?@>???>>>?>=====================>====?=>==>>>=======>>>>>>?>>>>>>>>?>>=>?>>>>>>=>>>>=>>>>?>>>?>>>?<>>>>>>>=?????????>?????>????????>??=>?@@@@?@@@@?A@@@@@@@A@@@@@@?????????@?@?@@????@????@?????>????@>>>?>>>??>>?>?>>>>>>>>>?>>>>>=?>=???>??>>>?>>>?>>>====9>>>?>=?>>>>===>=>>?>?>>>>>>>>>>>>?@@<<> MC:Z:151M MD:Z:112A38 PG:Z:MarkDuplicates.1C NM:i:1 MQ:i:60 OQ:Z:KKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:2123:5325:20067 83 4 57194357 60 151M = 57194062 -446 ATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGG ?::<=?@@@?@@@@@@@?@??@>?>?@????@>?>>????>???>>>?>=>>>>=>?>>>=?>>>>=>=>>>>=>=>>?>=>?>>>?>>>>>>>>=>>>;>>9=>=><===<======<=<=<>======<=====>==>=>>>>???>:> MC:Z:151M MD:Z:103A47 PG:Z:MarkDuplicates.1J NM:i:1 MQ:i:60 OQ:Z:AKFKKKKKKKFKKKFKKKFKKFFKKFKKKKKKAFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>??>>>>>===>=>>>=?>>>>?>=>=>==>>>>>>=>>>>>>?>>>>>>>>?>>>>?=>>>>>=>>>>=?>??@???@???@???????????????:?>????@@?@@@@?@???@>A@@A@@@?AAAA@?AA@AAA1A@:<86? MC:Z:151M MD:Z:102A48 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKFAKKKKKKKKKKKAFFKKKAKKKFKKFKFKKKKKKKF=======;===>><><=>=>==>>>>=>>5==>>>>>>>>=>>>>=>>=>*=?>.>*<>08<>*0>=>>)=(=.6=>>/;/*????0/5>??>>>>>>===>=>?>=>>?>>>>>>====>=>=>>>>>>?>>>>>>>>?>>>>?>>>>>>=>>>>=>>>??????:?????????@@@@@@@@@+.@@?@@=@AA?2A>AAA?@AAAAAA@@>;86= MC:Z:151M MD:Z:99A51 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKFKKKKFF,,AFAAKAFFF<7;<>>>>?<=<=><===>===<====<======>=<=====>>=>>>?>>>>>>=>>>>=>=>>?>=>?>>>?>>>>>>>>=>=>=>74===>=>>>:>>>>>>>>>??@????>?**>1=>=???>?>=>><@@6;8::>?+7=;> MC:Z:151M MD:Z:92A58 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAAAKKKKFFAKKKKKKKKKKKKKKKKFK,,A7FKFKKKKKKFAAAFK7A8:6+;/>8<9+*),-/51&'/.&<;456=>8=8=>7'>;;?><;6//>>>>>=5;:><>>75))46=;)==>5>8<:)4<<>==;=#=;==<9.=<;;<==<=357;:6<= MC:Z:151M MD:Z:20T3T9T3T2T3T7T38A24G24 PG:Z:MarkDuplicates.1Q NM:i:9 MQ:i:60 OQ:Z:##################################A<7,AA7A<,A7FAA<,,,,,,7,,,,,,FF<<7AKAF7KF7,KFAKKFAA,,KKKKKF<>??@=>=>?;===>===<====<<=====>=<====<=0&;<05<>>>>>=>>>>=>=9=?>=>?>>>?<>>>=>>>=>=>=*;>>>=>=>>>=>>>>>>>>7>=?>>????>??><>????>?>???>?>?@@<8=@@?>=;:A MC:Z:151M MD:Z:84C66 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKFKKKKKKKKKKFKFFKKKKKKKKKFKKKK7,FA,>8=<2/9+???>???.?28>7=?1:3?@=>=9-=,)<=<6>>><=>=>><==><;=;8>>>>:.0>==<>>>>>>:<4<>;><=>==:;===;8=<=;<====28<=<==<<=928=====>=7<64:??>@> MC:Z:151M MD:Z:7T36T76A29 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:###########AA7F<77<,KKKKKFK7K7AF@::07??=>*.:(:>:>>?>6>9@>?>3=>=>>>>=><<=?>=>>==>?<<.;>>>>>:>>/<<>=:><=<>>>>>=>=>;>==965;<>==>=>===<==>><<=;==><==>9>>.0<>>>=??5?= MC:Z:151M MD:Z:148C2 PG:Z:MarkDuplicates.1O NM:i:1 MQ:i:60 OQ:Z:####KF:?=<8=>??:7?????>??>>???>??>>>?>>>?>>>>>>>>><>?>>?>>>>>>>?>>>?>?>>>>>>>>>>>>>>?>>>>>>>>?>>>>>>>>>>?>>>>>>>>>>??@;?> MC:Z:151M MD:Z:144C6 PG:Z:MarkDuplicates.1T NM:i:1 MQ:i:60 OQ:Z:#FFAKAAA<7FAFFA:>>>?=>><>>>>=>?>>>?>>>??>>>>?>>>>>>=>>>>=>>>>?>>??>>??>>>>>>>>=>>>?>>9=?>@??@?>????????>?=@??????>?????????>??@<@@A?@@?@>=@@@@@@@@@?@A=>@@=;96> MC:Z:151M MD:Z:77A64C8 PG:Z:MarkDuplicates.18 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKF>==?>+$-?@><=>?A@?=><>??@???>@??==7=>????>=>??@?>>8???@>>>>>>>>=><>>>>=>>=>=><>=>>>>>>=>=>=?>>9>7>=>>=>>>>>>=>>>>=<=======#=====<=======<=>==?>>:>= MC:Z:151M MD:Z:7T118C13C10 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:<:<>?@@@@=@@=???@????????@??@?@??????>>>@??????@??>??>>?>>>?>>>?>>=>;>>>>>>>>>>>>>>>>>?>>>?>?>>>>>>>>>>>>>>?>>>>>>>>>>=>>=>>======>>>>>>>>>??>>>??>>?= MC:Z:151M MD:Z:138C12 PG:Z:MarkDuplicates.1W NM:i:1 MQ:i:60 OQ:Z:<@@?@?@@?>?>@?>????>?@???>@????>?>??>>=>=>>?>=>?>>>?>>>>>>>>=>>>>>>9=>=>=>>>=>>>>>>=>=>=?>>>>>>=>>==>>===<=====<==========<==<=======<>?>=>>?>?><> MC:Z:151M MD:Z:73A64C12 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:FKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HTL2KCCXX160412:5:2110:4371:23935 83 4 57194398 60 151M = 57194361 -188 AATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCA ?:;<>@@@?@@@@?<@???=@?????????????>??@?>?>?=>?>><>>>>>>>>>>>>9>>=>=>>>>>>>>>>>>>>>?>>>>>>>>>=>>>>>>>=====<>>===;=>===============>=====<====>>>>>>>>==? MC:Z:151M MD:Z:62A64C23 PG:Z:MarkDuplicates.1R NM:i:2 MQ:i:60 OQ:Z:KKKKKFFKKKKKKKAFKKKFKKKKKKKKKKKKKKKKKKKKKFKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HK3T5CCXX160204:4:2117:5193:44345 163 4 57194399 60 118M33S = 57194676 401 ATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCGGTTCTCCTGAATGCCGTGAGTGATTGGGAATCACAAGGAACATTCCGGCACGCAACTCTGTCCATGTGAGTTGTCAGGATTCTTCGCCCC ,=<=???>>><>>>??;>?>?>>>8:<><>?=<<=>>?6==>43?>>;,=>>>?>>6>;>,1659?((.0;,,4=)0-(959)8-898=?9=-7################################################# MC:Z:27S124M MD:Z:60C0A13A6A23T5C5 PG:Z:MarkDuplicates.1S NM:i:6 MQ:i:60 OQ:Z:,AFFFKKKKKAFFKKKFKKKKKKKAAFFAFKFAAFKFK7FAF<=))>@>?@<7='A?=78/.)?>@>?=(>????7??@=>>=80>75>>?>>?>>>>>>>?>><<>?=>>>>8=>>>>>>>?>>>>>>>>?>>>>>>>>>>?>>>>>=>>>>>??>>>>>>>>>?>>>>>?>==>> MC:Z:143M8S MD:Z:23G37A64C24 PG:Z:MarkDuplicates.1S NM:i:3 MQ:i:60 OQ:Z:7A,,77A<,,AFAFFA<<,KFA777,,AF>?>>>>=?>>>>>>>>>==>>>>>?>>?=>>?=>>>>>>>>=>>>>>>9>>>?>>?>>>>>>>>>???>@????????????????@?9?=???=??@?::9=;?@@@<@@>?@@@@@=0<<.?@@@?@@;A<<88# MC:Z:151M MD:Z:55A64C30 PG:Z:MarkDuplicates.1U NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKAFKKKAKFKKKFKKKK:7925-7:5.)@?>59:09=&.2<1>6?>>8(,>;?>=+,887;=78=1,1=4;6?>>>=>>9<>><5?>>>>>>;>>?;>>>>>>>=6=<9>???8:, MC:Z:102M49S MD:Z:6A2G34G72C33 PG:Z:MarkDuplicates.1S NM:i:4 MQ:i:60 OQ:Z:############A7A,7=;>>9?=7?;:.(?>=5;??@??>>>>=>=<>5=>>>>>>=>=>=?>=7>5>=>==>>><>>=>>>>>=>>>>><>>>>>=>==88====<=>=<===<===<=<===<======9><=>>??=7;> MC:Z:151M MD:Z:2T111C36 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:####FAFAAAAFFAFA7KF>@>>>>>>>>>?<>>>=>?>>???>??>>>?>>>?>>>>>>>9>>>?>>?>>>>=?>?=??@=@?>????:??@;@AA@>@@?@@@@).-@@<>@@@AAAB*??B@<;=996< MC:Z:151M MD:Z:46A64C39 PG:Z:MarkDuplicates.1I NM:i:2 MQ:i:60 OQ:Z:AA?==>?>>>>=>===<=9;=>=<=8;==>========<=<=<;=9===>=>>>=>>>>>>>>=>>?>>>>==*<>=>=>>>>=>=>>>=>>>>>=4<>>=>>>>>>>1=>=?@?????>??=:???@@@?@@@><;;? MC:Z:36S37M78S MD:Z:109C41 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKAFKKKKKAAKKKKKKKKKKKKKKKKFKAFKKKKKKKKKKKKKKKKKKKKKKKKFF,FKFKKKKKKKKKKKKKKKKKKK@<>??>>>=>>==<=<==>=<=>===>========<=<=<===>><>=>>>=>>>>>>>>=>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>>>>>>>>>>>?@?????>???>?????>????>?>??>@@@@?@A?=;;;? MC:Z:151M MD:Z:108C42 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2118:25347:62593 83 4 57194419 60 151M = 57194155 -415 AATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAA A<;==??@?@@?@>??@>*==???@???>????>???????>==>=>>>=>><>>>=>=>=?>>>>>>=>>=>>>>>>=>>>>><>>>>>>>>>>>>>=>>>>>=>==>=<===<===<=<===<====<=<==<====>=?>>>???=@> MC:Z:151M MD:Z:106C44 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z::=:(.@7.:*/)?44.8;-)>;5=7-=::>:<>>?8?>?<<=9>:=<3./0/(+<=;92>6-(,>==>:=3%><7<<7>:>?>=<=<==<>=<=>>><=92==;<==<=>===<><82=4>=>29= MC:Z:151M MD:Z:10A2A1A23A37A26C46 PG:Z:MarkDuplicates.1N NM:i:6 MQ:i:60 OQ:Z:#################A7,A,AF<7AA,,A<,7,,,FA<,7A,,F<??==<==>=<=>===><=======<=<=<=>>>>=>=>===>>>>>>>==>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>=????8?>???@?=???>???>????<>????>??@@?@@@@@@A@?@A>@?@@><87: MC:Z:151M MD:Z:100C50 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKFKKKKKFKKKKKKKKKKKK=>?>>=>=<=>===>========<=<=<====>=>=>>>=>>>>>>>>=>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>>>>????????@?????>???>?????>????>?>???@@@@@@A@?@@@@@@@@@@=<:7? MC:Z:151M MD:Z:97C53 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HJYFJCCXX160204:5:1202:4493:72420 83 4 57194430 60 151M = 57194283 -298 GATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCAT >99<>@??@A@@@A@??@???@>??????:>?>?>??>==????>=>=>=?>>>>>>=>>=>>>>>>=>>>>>=>>>>>>>>>>>>>=>>>>>>>=>?=<=>===>><>==>=<======<==<=====<>=====>=>>>>>>>??>=?> MC:Z:151M MD:Z:30A64C55 PG:Z:MarkDuplicates.1N NM:i:2 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKAKFKKKFFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HK35NCCXX160204:1:1219:25905:68306 163 4 57194432 60 151M = 57194547 266 TCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCGCTCTGAAGCTGTAACCCAGAAGGCACATCCATTC -;<>>;9>;>>?7;;>>7>>==>>;;446>+8;<>?>>;>>>;<=>=>4=;+8>==;;>8>>>>>4>>>;+9=?=)8:;7>>-;;1+=??=@=@>><@/:*?AAA@A@@@@A@@@A@?????=????@??@>??????@>??@?@?>???>?>>>>>>>?>>>>>>>>?>>=>>>>>>>?>>>>>>>>>>>??>>>>>>>>>?>>>>>>>>>>?>?>>>?>?>>?>>>>>?>>?>>>>>>>?>?>>> MC:Z:151M MD:Z:93C57 PG:Z:MarkDuplicates.1I NM:i:1 MQ:i:60 OQ:Z:6>???>>>>;7<1>>=?>>?>=>>>=>?:/98>?->>/7>>>>>>>>>=>><;>>>>?=7361))->?@===?96??=?>@@->>>1??::5>??<2***;<@?A>>@;@A;<=7983>?9/))7.5893+/?-49(>@AA@####### MC:Z:151M MD:Z:14A64C70A0 PG:Z:MarkDuplicates.1F NM:i:3 MQ:i:60 OQ:Z:?>>>>>9>>>?>>?>>?>>>>?>>>?>??>>>>>>?>>>>>??>>?>>>>>?>>>>>>>>?>?>>>>>>>>>>>??>>>>>>>>????????????@?@=?@@>@?>?@????5??@??????@@@@@?@@@@@@@;@?<17;6 MC:Z:151M MD:Z:13A64C72 PG:Z:MarkDuplicates.1H NM:i:2 MQ:i:60 OQ:Z:??=>>>>>=8=>=>>>=>=>>>>>=>=<==?>>>>>>=>>>>>>>>>=>>>>>>>>>>>>>>>>>>>>>>?>?????@?>???????>?>?????????????@?@@@@@A@@@@?@??A@@@@@@@AAAA@?AAAAAAAA@>586< MC:Z:151M MD:Z:13A64C72 PG:Z:MarkDuplicates.1R NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKFKKKFKKF UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:23967:16428 1171 4 57194450 60 151M = 57194321 -280 AAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGT ?89:>@@@@;@@?@?@@@?@?@@@@>?>?>@??????>??>??????>?==??=?????>>>>><>>=>>>>>>>=>?>=>>>=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>><========<====<========>==8>?>?;8= MC:Z:151M MD:Z:10A64C75 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:KKA7FFKKKKKKFKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:24403:16234 147 4 57194450 60 151M = 57194321 -280 AAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGT ?89=@@@@@:@?5@?@@@?@@@@@@>?>?>@??????>??>??????>????=>?????>>>>>>>>=>>>>>>>=>?>=>><=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>><========<====<========>==8>?>?;8= MC:Z:151M MD:Z:10A64C75 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:KKKFAFKKKFKF7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2107:10115:12613 99 4 57194460 60 151M = 57194635 326 GTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAG >@>>?>>>>=>>===<==<==>======<==<=<;<==<=<====>=>>>=>>>>=>>>>>736=><>;><=>>=>>>=>>>>>=><>>=;<=>=:>=>>>?>=>>>>=>>>??>??>????>?>=?????@>?:??>@@?@;9@?==;?>>>>>?>>>?:>>>>>>>>>>>>>>>?>>>>>>>>?>>>>/33>>>?>>>>>>>>>>>@??;???????=<>????????@?@???@>@??@=?==?@?<:?6@'=??2<@@@@@@@@@@>>9*2<@(B=?<@/<-=/=><#### MC:Z:151M MD:Z:61C43A41T3 PG:Z:MarkDuplicates.1S NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKAFKKKKKKKFKKKKKKKKKKKKKKKKKKKK7<>??>8>>>>>=>=>======<=======>=<>:>>>>?>=>>>>;<>>?>>>><;=>9>>?>>>>>88;=<>>>6?=)8<>;?>;<>>>=>9==8->>???????<-;),7.;,9: MC:Z:151M MD:Z:60C16T57T0G14 PG:Z:MarkDuplicates.18 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKFKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKFAKKKKKKKFFFKAKKKKKKKKA7AFAKKK>>?>?>>>>>>>>>>>>>>?>>>>>>>>?>>>>>>>>>>?>:>=<<>>>>>??>>>>?>>??@????9=???;@?@=?>@?@??@?7?>=;@==>;,,=<585;@@?8@9?9AA:/<=?:=9>>>>;>>1<82==&<>>>>>>==>>>>==07>5<4=>>=(<=398<;4:>;5=>,>5:,4,=:;??<6;@?@=?=:<@??>7;:?8>>=>9=8@@@;;'*1>95A?6?2..<4/>===4.*8>355: MC:Z:151M MD:Z:55C95 PG:Z:MarkDuplicates.1W NM:i:1 MQ:i:60 OQ:Z:?@?@?B@@?<;@?@@?@@@@?>>?????>??????????>??>??=???<>?@?=>>>=>>>=>=>>>=>>=:;><>>=>>>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>==;>==8==;==<==<==<==>=<=<=>?=>=>= MC:Z:151M MD:Z:55C95 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KFAFKKKKKKKKFFAAKKKKKKKFKKFKFAKKKKKKKKKKKKKKFKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKFAAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKFKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:4:1220:10998:62945 147 4 57194472 60 151M = 57194201 -422 GCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTG 868:>?B?AAAAAAA@@@@@@@@A><@/@@??@@@?@????@???>???????>?@?>???>???>?>???>???<>>>>>=>?>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>>>>?>>8=====<==<==<==?=<><>=>>>>><0= MC:Z:151M MD:Z:53C97 PG:Z:MarkDuplicates.1O NM:i:1 MQ:i:60 OQ:Z:>?>>>?>=====<==<=<====<=<===<=====<====<=====>>>>>>>?>>>>>=>>>=>>>>>=>>>>=>=>>=>>>>>>?>=>>>>=>>>>>=>>=>>>>=?>??????@>?:??>?????>??>??@@@@@@@@@?><;:? MC:Z:151M MD:Z:52C98 PG:Z:MarkDuplicates.1P NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1219:20466:25552 83 4 57194474 60 151M = 57194345 -280 AGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTT ?:;<>>A@=9@@@???>???>??>?>???>???????????>>=>>>>>>>=>?>=>>>=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>>=>>>>>>>>=>=>><========>==8==<==<==<==<==>=<=<>>>>>>??=;=> MC:Z:151M MD:Z:51C99 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKKKKKKKF??>??==??>=69=?=<><==9??;<>>>>>>?>>>>>>>>>?>>>>>>>>>=>=<;>>?>>>>?>:><8?>>?>>>>>><>>>>>>>>>>==7><>9<5;=>=<=>>>=>>??=>>>>>>>>>??<>?; MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1G NM:i:1 MQ:i:60 OQ:Z:KKFFF=>?>@>>>>>><=><======<=<===<=====<====<====>>>>>>>>?>>>>>=>>>=>>>>>=>>>>=>=>>=>>>>>>?>=>>>>=>>>>>=>>=>>>>>?>??????@>?:??>?????>??>??@@@@@@@@@@@@?><;;? MC:Z:151M MD:Z:49C101 PG:Z:MarkDuplicates.1J NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HK35NCCXX160204:1:2217:26332:34764 83 4 57194477 60 151M = 57194383 -245 GAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATT >;:=>?@@@@@@@@@@??@???????>??????????????????>>>>>??>>>>=>>>>?>>>>=>>>>>>=>>>>?>>>>?>>>>>?>>?>>>>>>=>>>>=>>>=>>>>?<>9==>========<==>>==>>>>>>>>=>???>?? MC:Z:151M MD:Z:48C102 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:FKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:5:1220:16934:43800 163 4 57194486 60 151M = 57194723 388 GGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACGCTGAAGCTGTCACCCAGCAGGCACCTCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCC =;=??>>==>=>6><=>=<====,:<>===>>>>>2;>=>>>?>>>>><>=>=>=9>>=(7;>=$2>8<99>=>>0<=>>>>7>9>>>>%<=???>9-6??;??==>?:??>?4=?==9;=;;@9=>5>1*??=AA@@@>?<76? MC:Z:151M MD:Z:39C24T10A6A6A61 PG:Z:MarkDuplicates.1N NM:i:5 MQ:i:60 OQ:Z:AAAFFKKKKKKK7FKKKKKKKKK,FFKKKKKKKKK?>?=>>>=<=<===<=====<====<============>=====<>>>=>>>>>=>>>>=>=>>==>>>>>?>=<>>>=>>>>>=>>=>>>>=>=>>>>>>?=>9>>;>????>??>???*;>A@@?@@@??;9:# MC:Z:151M MD:Z:38C112 PG:Z:MarkDuplicates.1P NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKFFKKKKKKKKKKF,==<=<===<=====<==#=<==6==)5+;=>>?>>/<>=>>==>/=><=6>;>=><=><>>>>;/6)&<<>>=>>><<=>>=(86/=<>?>8?<>@><:??'??>?5;??>:?@?8>???@@@:>@-@>8@@3+3+@;536=:9 MC:Z:151M MD:Z:0A23A7C3C114 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z:#AAFFKKKKKKKKKKKAKKKKKKK#KKFK7FK,A7AFKKKKK,AKKKKFKK,FKFKAKFKKKFFKFKKKKA,A,,FFKKKKKKFFKKKK,A7,FFKKF7KAFKKFKKK,AFFK7AFFFAAKK7FAKFKKKAFA,A<?>>=?>>>>>>?>>>>>>>=>=>>>>=====>>>?>>>>>>>>>>=>>>>>>>>>>?>?>>=>>?>>?>>>>>>>>>>>>>>>>>>>>>;;>>>>>>?>>9???@??=?=,8?>?@???????????@:5=@??@@@@<@???@?>>:;= MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1A NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKFKF,>?<=>?79*0*<;=<;===>>3662=:;<,><3<>><;<;96*:$<<>=?;=??>?>>,;'9<-;:=97>.8>.8$-8)9.8=9)4>2-7<3%80#68)%.-26=>@@18>>%)%1&&0).-,>746>=@A@991*#/.>>95<7 MC:Z:2S149M MD:Z:27T0C1T19C30C2T5T2T7T4A1T5T27C8 PG:Z:MarkDuplicates.1L NM:i:13 MQ:i:60 OQ:Z:AAFFF><<>=8);<><==>>>>=>=>:9<>><=>599>7:+);>>>>=*>=>>;>=<;;>>===8>?:?<>>>??>(19;2<=?>?>?=6;>9A?>@@),;;;> MC:Z:151M MD:Z:24C3C77A44 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:A>>>>===;================>:====>=>=<=>=======>>>>>>=>>>>>>?>>>>>>=>>>>>>>>>>>:>=>>>>>>>:>;>9>>;>>>>==>???>=??:=>>?(>???9>.29@??@@@@@3<18/?<;?>>>>5<;>>>?>>><>8-=<:;><=>;><-78;9>77>>>>>>>=>:>>>?>=(,6<:>>71<>(47/7,-=>>>)=>;->(6+++6<+=7;/&,88&.+9-7;=-1:)&+59==06<:,;,2:<,-)79:############ MC:Z:8S143M MD:Z:27C55T5T15A11G17A3T6 PG:Z:MarkDuplicates.1T NM:i:7 MQ:i:60 OQ:Z:<>@@=?@@@@>??>=??????>?@?>=??>???>?>=>>=>8>>>>=>>=>>>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>>>>?<>7>>>>>=>>=>==>=>=<=<=========<=>==<====>====<=>>?>>>>>?><> MC:Z:151M MD:Z:25C125 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKKAKFKKFAFFKFFFKKFKKKKKKKKKKKFKKKKKKKKKFKKFF?@?===A>AAAAA@@@AAA@AAA@@@@@A@AA?=??@@@A@@???@?@??@?????@??@????????????????@@@@@?>:>???>>>>>>?>>>??>>>>>>>>>>?>>??>?>>>>>?>>>?>>???>?>>>>>>??>=>< MC:Z:151M MD:Z:20C130 PG:Z:MarkDuplicates.1H NM:i:1 MQ:i:60 OQ:Z:AFAKAKKF<9=?>??:???@????@?=???@<>.>?=69>8>????;,>,>6?>9>>>>>>>>>>>>>=>>>>4:>;>>>>>>>>?<=>><>;='===6>>>?>>>>>><>?>==@< MC:Z:151M MD:Z:20C107A22 PG:Z:MarkDuplicates.1W NM:i:2 MQ:i:60 OQ:Z:#######AA,AA<&<5.2-7?9/(.1.'-->=/<-5=096;=6(;;.1,.58;2;,<:87>7)->8>=:9<-;988>>>>==<,<926?>=====><.:;>>>>?>>>?==>>< MD:Z:10T6A1C9A10C38A48 PG:Z:MarkDuplicates.1X NM:i:6 OQ:Z:#######################AAA,,A7,,7((7>>><9>>>>>?>>>>>>>>>99>>=8<;<=5?8>=>;8>?>>?>>>>>5>>@??6;=???????<<>??;>?@??:?&&89>>>?@@@@@@@@A@@@@@@?*9>@=@@@A@>A@===3>9?>?><@=:6;< MC:Z:4S147M MD:Z:17C70A62 PG:Z:MarkDuplicates.1I NM:i:2 MQ:i:60 OQ:Z:A>;==?>>?>>>>>>>>>>>??>>>>>>>>>?>>>>=>>>;>?>?>>=?>?>>?>>>>>?>>?>>>>>>>>>>>>>;>>>>>>?>>9>>;?>>>>>>>=;??=>=>???????@??>6>?)9??>@???@??@??-;>9=<87=?9==9;< MC:Z:151M MD:Z:17C133 PG:Z:MarkDuplicates.1V NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFFKKKKKFFFFAKKFKFKKKKKKKKKKKF7KK,AKKKKKKKKKKKFF,AF7FA7AAF7AKKFA UQ:i:42 AS:i:146 +HK35MCCXX160204:2:2202:13778:7110 83 4 57194523 60 151M = 57194446 -228 ATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCT <97@@>>5?<@?@???@?@??@?;??9@??@80===><98>6>>>>;5>90=;=8>>>>>:->>??>>:><884849<;>;>>>=<;<=;==9-<(<>>?>>=86>:94;?==;>>8882==?6??687> MC:Z:151M MD:Z:2C148 PG:Z:MarkDuplicates.1F NM:i:1 MQ:i:60 OQ:Z:A7FFKKKKF??>?>>>>==<>=>>>=>>>>>>>=>9>4=>>>?>>>>>>>>>>>>>>>>>>><>>>>=6=>:9>>9>9;=<???>;<>????;???????.>.???>9.87>@@>@@@=@=?:AA5?@@@AAAA:=AAAA?AA@@>;89# MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKKKKKKKKKKKK7FAKKKKKKKKKKKFKFKKKKKKKKKKAKKKFF7FK>>>>===<===============<======?=>===>=======>>>>>>>>>>>>>>>>?>>9>>>>>>>>>>>>>>?>>>>>>=>>>>>>>>?>>>>>??@????????@???>??????>???????@@@@@@@@?><;?: MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAA UQ:i:32 AS:i:149 +HK35MCCXX160204:5:1204:10307:19874 147 4 57194525 60 151M = 57194086 -590 GTTAGTTTTCATGCGTTTCCCCCGCTCTGAAGCGGTAACTCAGAAGGCGCATCCATTCGCGTTTTCACCGCACTGTGGATTCATAGTGTCGGGCCCTGTTATTCCAATACACTCGTTATGGACATGTGAAGCATTTGGCCCAGTTGGCTCC ##################################################==69?<=%'8';.78(-4288618?><86::5;+<2-%.$4&4''1>;>?>=><<+,;,1,58&&-+,-75:16>;;<>?>=>6>><=''7?;>?=>:<*< MC:Z:151M MD:Z:0C12A4T4A9T5C8A9A1A4T23G20C3C3A32 PG:Z:MarkDuplicates.1C NM:i:14 MQ:i:60 OQ:Z:##################################################AA??@@@@@@@??@??????>?????????@??????????>>>>>=>>>>=>>>>>>>>?>>9>>>>>>>>>>>=>>?>>>>>>>>>>>>>>>?>><====>>>==<>=>>===<;&===================>>>>>??>==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF<,KKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1108:28036:59306 99 4 57194529 60 151M = 57194815 437 GCTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGTTTCATAGTGTGGGGCCCTGTTATTCCAAGACCCTCCTTAAGGACATGTGAGGCATTTGGCCCAGTTGGCTCCCAGG >-???>>=>=>8>9=<=7;;1>:=<<),01-88<:*01<<2;;<*.5:<35=>:>=>>/8=>42;5>15250=50:1**7(,<-=<>=8%<;18/00/86>9*+7108218??8*>8769==/9>,-'7??/6;1==;############# MC:Z:151M MD:Z:1T72A28T21A25 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z:A,AAFKKAKKF?>=??>=>>>>>=>===<=<==<======>=<====<=>=>><>><>=>=<:=>>>>>>?=>9>>=>>>>==>>=>>?>>>>>>>>>>>>>>>?>>=>>>>:=>>>>=???>>?>>?????>?????????????@@@?@@@<:4><:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKFKKKAA8:;>>=0=<=:;@?@?@=@????@?>?>;@?>>???????????????????>=9<9>>>>>>>>>>>>>>??>=>>>>>>>>>>>>?>>>>>>><7>>>>>>>?>?>>===>>>>>?>>>==>=>=>=>>>>===>>=>?>>>?>=>>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U NM:i:0 MQ:i:60 OQ:Z:FKKK4)..+.;&9*=%(>>>2(2/.>??->6.>=>97.+8=9>:<>>:>>=.:-)=98=:0/2<<<9=>>=<>=><>>,=<.==7<=8%>-><==:...>=>< MC:Z:138M13S MD:Z:6T4A19A4A66T14 PG:Z:MarkDuplicates.1J NM:i:5 MQ:i:60 OQ:Z:#############################################A7KFA,A<,,7,,<(A,A(,KKK7,7,,KFF,F<,KAKA7,,7FKKAAKKFFKF,<,,F<7K<<(@>?>?>>>=>===<======>=<====<=====<==<====<==>=>>>>?=>9>>=>>>>>=>>=>>?>>>>>>>>>>>>>>>?>>=>>6=<=>>>=>>>?&6>==<>???>?>?:????>??=:>>?????>???@@@46=@??=;:# MC:Z:151M MD:Z:103A47 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@@>@@?@????>@??????>????????>????>?>>>>>>>?=>9>>>>>=>>=>>=>>?>=>=>>>>>>>>>=>?>>=>>>>?>>>>=>>>?>>>==>>=<=<==============<=====<======<>>>>>>?=?>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1223:10236:52660 163 4 57194543 60 151M = 57194777 385 TCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTT =:<==?==<==<======?=<>====>===>=>>=>>>>=>=>>>>>>:=>9>>=>>=>>;>>=>>?>=>>>>>?>??????@??>????@>???>??=????>>?==??>?@@@@@@@=@>@@5?@>8@A@??@@@:1@@@@A@@?#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFFKF;:<????>???>==???>>><@?>9>>>>>>>>>>>=>>>?>=%:>5>=>>>>>>?>>=>>>>?><>>8><>?>?>>><>>>>>>?=>>>>=;>>==?===<=<<===>=====>>>>>?>=>???>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:KKA=:>;><>>;3<:-;9==>>>>>>>>><>>>>=>9/>>&.)7<>->>17,+<=770(77<:>0(/:>??.<>9=<;>>><?<=6==<--1/:*).6?<=3>0+&1:7*1??9############### MC:Z:151M MD:Z:141A9 PG:Z:MarkDuplicates.1X NM:i:1 MQ:i:60 OQ:Z:?=A@<@==)-@@@A@@@??>>????????????????@>?:???@>???=?>>>>??>>>>><>>>>9>>=?>>>>>>>?6>>?>>?>>>?>>:>>>>>>>?>>>>>>>>>>>?>>>><;<<;>?>>>>>>>>>>?6>>>@?:>8> MC:Z:151M MD:Z:13A137 PG:Z:MarkDuplicates.1I NM:i:1 MQ:i:60 OQ:Z:#A>??>>=>=?=<==>=<=====<>><=>>>=>=>>>>>>?=>9>>=>>>>>>>>=>>?>>>>>>>>>>>;7>>>>>=>>>>@=>>?>???@??>?>?>???>????????????@@@@@@?@>@@@?9?>@>@A>>@BAA:@A?>;89: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKAFKKFKKKKKKKKKKKKKKKFKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKF78;>@@AAAAAAAAAA<>?>?<-@@@@?@8.8=?7@<;<@@@;@>=@??=:???>?????=9??@@=@?????@==?=>7=>>;;>===>>>>=8?8(>>>>>=>>>?>?>;>>>?>>>>>>>????>6???>??<=>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H NM:i:0 MQ:i:60 OQ:Z:<=====<==<====<=<======><=8>>=>>>>>9<><>>?>>>>><>>>>>=>>>?>>=>><>?=>>>=>>>?>>>==>>>>>>????==>?????????????>????????>????@A@@@@A=@@?A@A@?@@?><:7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAKFKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAAFKKKKKKFKKKKKKKKKKKKKFKKKKKFFKKKAKKAKKFKKKKKKKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:4:2116:13565:10714 147 4 57194561 60 151M = 57194342 -370 AACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGAC =;7;=A=-?;?=??<@???<=?????@??>@=???@?=?9;?@?@?@??>?>>>>>>?>>>>>><>>7>?>>=>>?;>>>?>>>>>>>>>>?>>>>?>>>>??>>>>?>???<<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:FAFKKFA,7FFFFKAFKFFAFKKFKFFAF>??=>??>??>??@?>?>?????>>=>>>>?=>>>=>>=?>>>=>>>>=>=>>>>>>;>>>>>>>=>>>>>=>=>>>>=>======>====>===<>=<=<==<====???=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKFF,1)&:--;=?=<)<5%&%(;8==%7$8.''-8-'-$8.7-28+;/8&$$$=1;:$$&'$1&%<>>>:5)-%<:4<;><>43..8,5(<013>.??4>>2=???<>.:59/..><:>################################# MC:Z:151M MD:Z:22T6A1T4A0T0T1A1A8C49T8A9T6A3 PG:Z:MarkDuplicates.1O NM:i:13 MQ:i:60 OQ:Z:AA,,,,A,,AFFKA,AA,,(,<8:<>@@@@?A@@@?@@???>=@A>=:?????>=?>??>??@?;7>?????????>?@?>=>>>>>>=>>>?>>6=>>>>=>=>>>>>>>>>>>>=>=>>>>>=>>>>>>=>;>====>====>===<>=<=<==<===<=>??><>= MC:Z:151M MD:Z:145A5 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKFKKKKKKKKKFKKKKFAFFAKKFAKKKKKKKFKKKKKKKKFF)(,.=7,-?;9)???==96,+==(7+=:@????=??>>>>>?7>>7>;43>8>?>>>482>889?>>>>:>>>>>?>>>;?+>>>??>>>>?>>>98>>>?;=9/< MC:Z:151M MD:Z:20T49C73A6 PG:Z:MarkDuplicates.17 NM:i:3 MQ:i:60 OQ:Z:##############################FAA,,,,A<,,FFFA,FKKFFA,FFKKFKKFF<7,,FF,7,F=>==<9<==8<==8<=8==<===5<9=/9;>?=<5<4,4*&7317<>?>>=>>>>?=>><<:=<:9+<;=5>8=-:6<<>>:>5+8679=>??<>:5;>>??@??/==;=>?A@>@9?;A@@?A>##### MC:Z:151M MD:Z:139A11 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAF?@A?A>A?????@??@????????>>>>>>>?>>=>>>>?>>>>=>>>?>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><=====>>===>=>=>====>====>==============>>=>??>?>=? MC:Z:151M MD:Z:139A11 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:7KKKKKKFKFAFAAKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2111:29143:57495 147 4 57194577 60 151M = 57194257 -471 CCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGC ?8:<=<1;9:?=4;@@;;@@@@?@=>??>??=?<:7????>????>?@?=>?>=:'8??==>>>?=>>=><>>=>=>>>>>>>;6>>>>>=>>;>>=>>>>>>=>>>>>>>?>>>>?==/<:=<=<==<===:=====<=>=<==??>=;= MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKFFA<,<7=><=8==<=====<==<==>=======>>>>>>>>?>>=>>>>?=>>>=>>>?>>>==>>>>>=>>>>>>>>>>>>>>>>>>>=>?>?????@????@????@???>??>??@??@@@@?@A@?@?A@?@@@?;:8? MC:Z:151M MD:Z:129A21 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:1124:17787:48054 147 4 57194587 60 151M = 57194476 -262 TTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCA >88;=?;A@@A@@AA?@@?@@A@?@?@@@@@@@@@<@@??@????@>???>???@???>?>>>=>=>>>>>>>>=8=>>>=>>>>><==>>>>=>>>>>>>?>>>>?>>>=?>=>=>>=>>>==>>>=<=>===<==<===?=>>?;><<: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J NM:i:0 MQ:i:60 OQ:Z:KFKFKFKKFA@?@@?@@?@?;@?@>???:?????>?@??>????@????>???@=>?<7>>>=>=>>>>>>>>>>>>>>=>>>>>=>>>>>>=>>>>>>>?>>>>?>>>=?>=>=>=<===<===#=<=>=<=<==<===>==>?<><>= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KFKAAFFKK?<@A@@@A@@@??@@A?@?@@?@??=@??????????@???????=???@?????@?>??@????=?>?>>?>>>>?>>>>??>>>>?>>>?>>>>>>>???>>>>?>?>??>>>?>>>>>?>>>?>??==:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:FFKKKKKFFAFKAFAA,FFAFKKKKKFKFFFFFKFKKKFFKKFAKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1212:3671:37875 99 4 57194602 60 151M = 57194950 499 GATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAG >;=<>=>?>=>>===========>==<====><===<===>===<==>><>=>>>>>>>>>>>>;=>8=>>><>>>>>>=>=>>>>>?>>>>?>>>=<>>>=>>;:*<==????>??>?>>???@>?>+=?>?>?@@?@?@??>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A<<:-08>=;:0/3/''0>9<**9&0;)/*0&+78...**.<302>>>>=>8$(<>;;0/50<9...??<7;<.8/(&=8>=<>?0+>7:?@@?@/9197@:@############################# MC:Z:151M MD:Z:50A44A29A15T9 PG:Z:MarkDuplicates.1P NM:i:4 MQ:i:60 OQ:Z:,,<===5========>==<====><===<>>>?>>>==>=>>>=>>>;<>>>>>>>>>>>=<>:;7>>>>>=>=>>>>>?>6=<9>>??@???:=;=???>>?=?9>?@?>?>??>???>>@?@@03;?A@@?@@?=3=A?>=9:< MC:Z:151M MD:Z:107A43 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFFKAKKK6=6/&9<>?<@A7=>.?/;9--=-@@?>19->)/:?=>@=<<><@89-<=?5==7<3@>???>9+5?>?:<>>??;9>=?7>>?8>>>>><=>?>=<>?>=;??>=>?>>>>>?>>>?>>>?>?>???9=< MC:Z:151M MD:Z:34A116 PG:Z:MarkDuplicates.1V NM:i:1 MQ:i:60 OQ:Z:#AF<<((/@:(:(?>;<37007<=9;(');>>6..(3)8)&207>=>>;>>><9><><:=,>:?<57<,8=>>:;86>>>=8(73--6>==>==<==993<=>=><8< MC:Z:151M MD:Z:15T12T79T42 PG:Z:MarkDuplicates.1K NM:i:3 MQ:i:60 OQ:Z:################################A,AA,7,AAF<<7,7=6:=4:3>;;>>2>8>=744<='9=>=;=79>>/<5,857>)054::(84=381>;8&=;97<=5??=>>>?<-:>=/><68<4=;'=19988<>8<=;=;'-5'/+7>8',<6-'?:?>?)-7?3?>71>(;?@<<### MC:Z:151M MD:Z:41A100A8 PG:Z:MarkDuplicates.1D NM:i:2 MQ:i:60 OQ:Z:AAAAF<:+0//@>=:@@@@@??;?@@?@?>???????>6>?:>?????????????9???>>>>>>?>>>>>>=4<=9=><>>=>?>>>>>>>>>>?>>>==<<>=>>>=>>><>=>=>===>=>=>?=>>==; MC:Z:151M MD:Z:17T133 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:77FAA@@=>@@=@??@?@??????????@???????????@????;5?>>>>>>>??>>>>>?>>>>?>>>>??>>>>?>>>?>>>>>>>>??>>>>?>?>=>>>>?>>>>==>>>>>>>>>>>??===< MC:Z:134M17S MD:Z:136 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:FA???@?>?>????>?>????????>>>>>>=>>>>>=>>>>>>=>>>>>>>?>>>>?>>>=?>=>=>>=>>>=>>>>>=>?>=>=>><>>=>====<=<=====<==<<=<==<=<==<=<=>>=>?>?=>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKFKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:7:2215:6147:36575 99 4 57194621 60 151M = 57194794 324 TGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCTCCATCTAGGGCAGT >;=???>>>>>>?>>>?>=>=?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>?>>>>?>>>>>>>>>>?>>>>?>>>>??>>>>?>>>?>>>>?>?@@@????@?@?@@???@?????@???@???@?@?@A@@@@A@@@@@A@A?><::? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:19319:5036 99 4 57194622 60 134M17S = 57194620 134 GTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATAGATCGGAACAGCACAC >>>???>>>>>?>>>?>>?>>>==>>>=====>>>>>>>>>>>>>>=>>>>?>>>>>>>>>>>>>>>?>>>>?>>>>?>>>>>>>>>>>>>>>>>??>>>>>????@@?????????@???@???@?@???>??@@@@@;@??4??><:9? MC:Z:15S136M MD:Z:134 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKK??70-;?;==99?2?>>??:7:>??:??=:98%>>>>=>5<=>:5<8>/<<>=>=<=78;<337;/7;<;=>=<=<=>=<<>>>9=;?><=68><>8=?====<=<=<=:=<==<<=<==<=<==<>=====>?><+>??7;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:<=?>=><===<===>===<<=#===<=====>>>>>>>>>>>=>>>=>>>>>>=>=>>>>>?>>>>?>>>>?>>>=>>=>>>==>>>>=?@?>?>??>???(;?????>?>???>???>?>???@??@?@<;>@?@AA@@(36@7::? MC:Z:151M MD:Z:24T126 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKKKKKKKKKKKKKKKKFKKKAAFKKKKKKK,77A>@3?@@?@???=????6???>??@?????>>*8?=>*<>>>>>=>>=>=>>9>>>>=?>==>>>>>>?>><>>>=>>>>>=>>>>>>=>=>>=9>>>>==>>====<=====<=<======<=<===8<=<===>>>>>>?=>>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKFKKFF7KKKKKKKKFKKKF??@>>>?>>>>>?>>>>>?>>>>==?>>>>>>>>?:>?>>><>>>>>>==,0=9>>?>>?=>>>5>?>?;>>>>>>>?>>?>>>?>>?>>?>.<=7==;?7:;???@?7-9=>>85;=4:>?@>>=>@@;@A=?:?@72:<8###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F NM:i:0 MQ:i:60 OQ:Z:?><=>====><==<==><=======>===>>>>>=><>>>>>8>9>>=>>?>>=>>>>>>?>>><>>=>>=>==>><>>>=>=>>=9????>?><;?;???>9???>=9>:9@9@0??=>;<=@@A@=@19<=9## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKK>?==>===8;<==<==><=======>=====;>>;>>;>>>>=>7>;>>>?>>'.)4<3=?><>>>==<,8>>=>>>>>>=>=>==9>=??>?>?????2=>?>?>?8???>???7>>?8@681=%*(=5A@?<><### MC:Z:151M MD:Z:57C93 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKK<>>>>>====><==:=7><===#=<=><===8&8===8=><>>=>9'7==77>>;>>>>.=0<=<=4<=><;><;<>=<>>=>(==558:=>*<'882=<=6>>?>;?8<>?:1?=################################# MC:Z:151M MD:Z:24A9C87C10C6C2C7 PG:Z:MarkDuplicates.1Q NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFK7KKKKK#KFKKFKKK<,AFFF7FKFKKFKK,AFF7AKKFKKKK7A7FFFF7FKKFFKAAFFFFKKKK,FA?@<@=@A?=<;8/*<8/)>,6?>@:?@?>:=@??=9'?;;84<<>??@??>???@?=<>8??>>=>>>?@>>?>>?>=>=9>>>>>;=>>>?<;=>:>>>;>=5>8(5>>>?>>8=?<=>>>><==>>>>>>>>>>?9==;:< MC:Z:151M MD:Z:18T3A128 PG:Z:MarkDuplicates.1A NM:i:2 MQ:i:60 OQ:Z:7AKFAFA>>>>=>>>>>>>>>?>>?>>>>>>>>>>>>>>>9>>?>>?>>>>>>>>??>>>>>>>>>>???>>>>>????>??:?@>>>????????>?>??>??=?=@@@@??>??:???;<8?@@@@@?@@@@AA@>9>@A@=?>;86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKAKFKFKKKKKKKKKKFA>?@?@@@A????????@??????????>??>9>??:>>>>=?>==>>>>>>?>>>>>>=>>>>%=>>>>>>=>=>><'>>>>=><>>>>>=>>>>>=>==*>===<=<=<-8<=<======-=<====<>=5==>>>><>??>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKKKFFFKKKFKKFKKKKFKKFKKKKKKKKKKKKKAKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKF,KKKKKKKKKKKKF,KKKKKKFKKKKKKKKKKKKKKF,KKKKKKKKF,KKKKKKKKFF,KFKKKKFFF=?@@@A@@@?????@??????????????????:??????>>=>>>>>>?>>>>>>>>>>>>>>>>>>>>>>>>=9>>>>>><>>>>>>>>>>>>======>>===>=>8===================<=====>>>>>???=@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:KKKKKAAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:2212:12682:53346 83 5 156355146 60 151M = 156354993 -304 TACAACATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGA #76;=<:>==>><@@@?;88.>@@?@@@???>9??7??@??@@???==??@@?>????>?>>@?>>?>>?>>?>>>>9>??>>=;>>>?>>>>>>>>?>>?>>>?>>>?>>9=?>>?>>>>>>>?>===??>>?>>?>>>>>>>??@?==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L NM:i:0 MQ:i:60 OQ:Z:#KA=2??@@;-??>?=>>8->><>>?>>>>>>?=5>>>>>>>=9>>>><8+=<9<0>><8;>>?>>>>>>?>>=?<=6>?>;=>>==>======:==<=>===>>>>>>>?=???>><< MC:Z:92M59S MD:Z:2A148 PG:Z:MarkDuplicates.18 NM:i:1 MQ:i:60 OQ:Z:################FKKKKAA:4(@@6A:AAAA=@@AAA@AAA?@@@@@@?@;@?:@@A@@>??????@?=??????????????????????>9?>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>==7>>>>>>>====>=>>>>>>==>>>=>===>>>>>>??==9; MC:Z:151M MD:Z:4A146 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:<<7A,FA7A7KKAFFKFFKKKFFFFKKKKKKKKKKF>>>>>>>>??>?>>>>>>>=>>>>>>>9>>?>>>?>>><>?>=?<;<>>>>?>>?>>>?>>?>>?>>>>9>?>>>>>><>?>><=>==>?8,+=?;@69>@??7>9<<8=??38?;819?<@5:7)'5/>)6@@0@;@)=;>;:5## MC:Z:21S130M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKFKKFKKKKKKKKKKKKKFKKKKFKKKAKAAFKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKFFKKKAFKFFKK7,,FKAK7AFKKKFFAAA:97=@8?;;@>A@@AA8>:6;/:),>;?5?96=?;>?:?@?????:?@?=1:,???@??>><>>>?>>>>>>?>>>?>>9>?>>>>>>>>>>?>>>>>9==?>7?>>>>>>>?>?>?>?>9:<6< MC:Z:151M MD:Z:1T149 PG:Z:MarkDuplicates.19 NM:i:1 MQ:i:60 OQ:Z:####################FA7?::*>:.;91??=0>?804><>:>>8631>>>>/4;4>>=.8>>>0;0*&=815=><>>>:93:9=>=8.>>:2/=67>>=:<=6>>>>=>>>=>=9; MC:Z:151M MD:Z:2A8A2T7T8C3T66A48 PG:Z:MarkDuplicates.1R NM:i:7 MQ:i:60 OQ:Z:#################################################FKKFAAA,AA,7A7FKF,FF7,AFAA7FF7A77KKKF,/8(8<5=%/@;?;A@9,/'8@@@A?;6?>>911)>1?1):???>?8=?)><<:?@>.:>====;(?<5&><4?9><-==?5>9=883(?>>>98>>>>>=>>>>?===>>==>>=>>>>?>?>?>?2>>?<;< MC:Z:151M MD:Z:5A2T47T94 PG:Z:MarkDuplicates.19 NM:i:3 MQ:i:60 OQ:Z:##########FAFAAKF<,<,7A<<((KKFAKFA,,,7KKKFKA7FAAA77,A7KA,AKFKFFAFF,FAAKKKF,AFFFFF<,KA7(KF??>>>??>?>>>>>>>>>>>>>>>9>>?>>??>><>>?>;?>>>>>>>?>>?>>>?>>?>??>?>?:?@??>?????@?<<=????@.9<>?@>=8?@>==??:46@4?@@@@A@?@?;3;<4<=@:/?@A?@@@@????=>??>?;??:????>@?>>>????>?>>>>>>=>>>>>=>>>>>>=>=>>=9>>>>=>>>>>>>=>>>>>=>=>>>>>>=>=>>>9===>===============<=============<=<>=>==>>??>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKFKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1111:8836:13035 163 5 156355156 60 151M = 156355264 259 AAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCT =<<>>?>>=======<5=========6=====>=>=>>;>>>?>>;>>>3;=<<>=>>>;>>=>=>597><=:=<;<>>>>9>=>>>=>=>=??????>???89>=/8???==?/>=?=<@?;9?>@<;?@>?443+;:### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKF7FKKKKKKKKFKKKKKKKKKKKFKKKKKKAKKK7AFF???>?>>========<=======8=====>==<======>=====>=9>>>>=>>>>>>=>=>>=9>>>>=>=>>>>>==>>>>=>=;>>>>>=>=>=>9=>=86>>?<=?>?>?<>>????<;?@?=?8@9@@?@?=18=<### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAKKKKKFKKKFKKKKK77FKKFFKKAFFKKFAKAKKKKAAFFKFK=>????>?>707>>>44>:=>/<9>>>>>>=>9>>>?3>=>>>>>>>=>3:>>>?>>=>>?>,9=78887>?;==?06806;9?6<69<@>>?:>?08;?)?>:***.'.:1@0A,;7<@3:?>-@@1A9>*>9@9@:;*+:=7?> MC:Z:151M MD:Z:105T45 PG:Z:MarkDuplicates.1E NM:i:1 MQ:i:60 OQ:Z:99:>9A@?A?AA@?A:@A:@=>?6?@A=9@A=9@:>>???@??@??@???>:?@????;?>?@???????>@>>>>>>?>>>?>>9>?>>>>>>>>>>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>??><<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:KF<7<7KFFFFKKFAKAFKAKFAFAFKK8?????@?<:>>>>??@>/9>>>><>>>>>>>>>>>>>>>>=6>:>>>>>=:>>>1<>>>><=>=8=>>>>><=<<6=====<<<=9:==<=====67=<<7==<===========9=>==;??>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:A,A,FKFKFKKKFA7KKFAKFA(FFKKKKKKKF7FFFAKKKF,7KKKKFKKKKKKKKKKKKKKKKKFKAKKKKKFAKKK7AKKKKFFKF7FKKKKKFFFFFKKKKFAFFKAAKFAKKKKFA=??@@??>???????>>??@???>>>?>>?>>?>>>>9>>>>>>>>>>>>>>>>?>>>>=>?>>>?>>9>?>>====>>>>>>>>>====>==>>>=====?>>=?>?<=>=>>?>=>>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:KFF7FFKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:4:1204:9831:50937 83 5 156355159 60 151M = 156355009 -301 AATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAA ><9=??A@@@@@@@@@@@@@??:?>@??@@?????@?@@???????@??@????>>?>>?>>>>9>?>>>>9>>>?>>>>>>>>?>>>>>>?>>>?>>9>?>>>>>=>>>>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>>>?>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:FAKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF???>>>>>===========8=====>========>>>===>><===9==>>>>>>=>=>>>9>>>>=>>>>>>>=>>>>>===>>>>>>>>=>>>9=>=>===>?????????????????????????>?>?@@?@@@@@@?>=;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAFKKKKKKKAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:3:1223:21745:14160 147 5 156355160 60 151M = 156354998 -313 ATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAA ####9*@@??A>AAAA>@:@>9>;3@=@?8>@>?A9;=?=>???@?>@<>@?,???@>=?:?@?>>>>>?>>>?>>78=>>>><4>;0>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>>>>@??==< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:####A,FKFFK?>>>>>>==>===8=====>==<======?=>>=>=<<==?==>>>>>>=>=>>=9>>>>=>=>>>>>=><=>>=>=>>>>>>>>=>>>9=><<>>>><>>=?>?=6=?=>???@?????>??>?>??==4@?>@@?A@@?><:;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK/<7?<9A>?@9@<*99AA@@@@;A:2=9.>@:@@A@?@??;@??@??@??:8:?><>9;????@??>?=?????>>??>@>>=<>>9>?>>>:=4>>=>=>>>>?>>>?>>?>>>>>>>?>?>?>?>>?><7>>??>>??>=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T NM:i:0 MQ:i:60 OQ:Z:AA,777<,A<?@@??@@??>??:????>@?>>??????@??????>>>>>>=>>>>>>=>=>>=9>>>>=>>>>>>>=>>>>>=>=>>>>>>=>=>>>9=>=>>>>>>>=>>======<=============<=<=<=<==<==>=>?>>???>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1212:6512:47017 99 5 156355166 60 151M = 156355390 375 TGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAA ?==>??>>>>>=====8=====>=========>====>=====>><=====>=>=>>>9>>>>=>>>>>>>=>>>>>=>=>>>>>>>>=>>>9=>=>>>>>>>>>>>???????????????????>?>?>@=/>?>@?@@A@A@??<;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKK7>060,&&)6:,.'+:9/&-6(-05.+4;;8=84=421=08>>3+)9=<3'<:;<>=######################################################################################### MC:Z:151M MD:Z:13C8C3C35C5T8T4T4C4T35A5T0C12A2 PG:Z:MarkDuplicates.1Q NM:i:13 MQ:i:60 OQ:Z:AA0====8===88><=9=;====>==<==>=>>>>>=>>>>>>=><>>=9><>>=>=>>>>>=>>>>>27=>=<>>>====>>9=>8.:>???????>??>??>???????>>?>?*=*>;?@=:;>?AA@??@@@?@5=98= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:=>99>/;7;:78;:0,?;885<;??????=>/?>?>????><7==>>=9===9==>>>>>;=>>>>>;;=<>>>>>=>=>>>9=>=>>;>=>>>>>><;===<====#========;=<=<=<===???<>= MC:Z:72M6D79M MD:Z:6T4G5A10T1G80C24 PG:Z:MarkDuplicates.1Q NM:i:6 MQ:i:60 OQ:Z:KA<,A<,,,,KFFFA<>?>>=8====<8<=<<=====>===8<=;==>>>=>>>>>><><9><7<=>>=>:>>;>)9<>>>>==9><=>>>>>=>>>88>=.;>>/<88;??9;.>?6???=??=::?>=?;?9<22*8=921:==@@@=44;:(<=9;7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:,AAFFFFKKKKFKAAFKFFKKKKKKKKK=?>=>==<======>=====#======<==>>>>=>=>>=9>>>>=>=>>>>><>>>>>=>=>>>>>>>>=>>>9=>=>>>>>>>>=>???>??>??????????>??>?>?>?>>@>=??>?A@@<@@@@@@@??>@??@@=<:8> MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKFKKKAKKKKKKKKKFKKFKFKKKKK UQ:i:2 AS:i:149 +HJYFJCCXX160204:8:2212:5619:49513 99 5 156355182 60 151M = 156355452 421 GCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCA =;??>>=>>====>============<======<=<==<8====<><====><:==>>=>=>>>>>>>>=>;:9=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>=>=?>>>;?>???>?@?@????@??@?<@@?@@@???/39? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:@@=@@@A@>=1?9>?????>??:9>>??>:=>=91:=<>>>>=:5<>>>>=><>>>9=>=>>;4>>>>>>>>>>>>=>=>=>;;4=>>=><><=:;:0=<===<=>==========<<=><==>=>>==???<;> MC:Z:147M4S MD:Z:2T148 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:###AKKKKFFKKKFFF7KAKFKKKKFFFA<7KKFKKKKKFFFA7?>>>>>?===>=>=>=>>>=>>>=>=<=<>>>9>>>>=>>>>>>>=<>>>>=>=>>>>>>>>7>>>9=>>>?????????>???>8>9????????????>=?=@@;=@?>?@??@;>@@?@@@@@A:@?=/??@@@;>?@@,78# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKFFKKKA7F7KKKKKKKKFKKKKAAAFF7FAFF2=9@@AA<3?3@=@;@@@@?@=9?=@?????????????????>1?=385:>=?=>>6>>>>>><>>>==9>=:<<>>>>>>>>>>>>>>>=>>>=>?====>=>>>>>>>=>>>=>====>>>>>?>>=8; MC:Z:151M MD:Z:7T7A135 PG:Z:MarkDuplicates.1R NM:i:2 MQ:i:60 OQ:Z:#AFKFA<,,,7F7,<(KKA,A7?;907??>?>94>?==59$2930>=:>68((.=8>>>>=;>>>>>3;>5.>>>===>>==7*==>=7><6:=>>>>>>>======<;=<<:===>======;==========>====<=>>>>@>?????>???==1?>??????><>???:=>=>>>>>>>>>>>>>==;=>>>>>>>>>>>>><==>=>=<>=>>>=>?>>>>>>>>>=<:==<===<===<==============?>?=<= MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:#AFFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKFF7AKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKFFKKKKKAKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:2 AS:i:150 +HM3G2CCXX160308:2:1104:19065:11347 163 5 156355200 60 151M = 156355380 331 TGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAG =>=??>>====<======<=<==<8====<=<==>>><>>>>>=>=>>>>>><>;>>>9=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>>?>?:?>>?=?@??????????>>??>????@>@?;>/.=/>9::>?>?>=9->?=;????>?>>><9->=>=>>>9=>=>>;>>>>>>>>>>>>>=>>>>>>>>>>>>=<>===>=>>=>>>==>>==<===<===<===9;==<============<=>=>>=?>?=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A,FA,AA,,<'.)9(<7===9-=5><0>>9;;59;3>>=5(97/>(>>=.(=(.(=(,=->=>;1;;>>>>=>>>>=>>?>>>;(>=2;8<=3)18?>>>>>0>>>?>?>?>>?>>>=@> MC:Z:131M20S MD:Z:11A0T16G44G40G35 PG:Z:MarkDuplicates.1B NM:i:5 MQ:i:60 OQ:Z:##############################AF7F==>=?>=>=>><8====<=<=====<=====<=<=====<<=<>>=9=>=>>>>>>>>=>>>>=>>9>>>>=>>:>>=;>=>=>:>==>=>>>=>8>>>>>=6;>>*6???>???>??????1::>7>?>>>=??@9@'<@?>=9>>9>=====>>>=>>=>>>>==><9::>>>7:>:=<9=>:>,:=<<8>;$1=>;/:<>>>>8::8<<8?8?;???;??::??9>&0/=:==/=>>:>/@@?@@@@?:/)8@.+=<<########################### MC:Z:151M MD:Z:1A55T34T57T0 PG:Z:MarkDuplicates.1R NM:i:4 MQ:i:60 OQ:Z:A#AFFKKKKKKKKKKKKKKKKFKKFKKKKKFKFAAKKF7AFAFFKKK7F,AFFFAFF(;:=?<;@??@?@?????=>?????>?>??????>?>???:=>=>>>>>>>>>>>>>>>>=>>>>>>=>>=>>>=>=>==<8==>>>=>?>>>>>>>>===>>><>>=<===<====;========<=<==<=<=<==<>>>>>>>?>>?> MC:Z:151M MD:Z:68G82 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:FKKFAAKKKFKKFFKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAF7FKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HK3T5CCXX160204:2:1112:16904:59850 163 5 156355219 60 151M = 156355292 224 GAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGG <>:?>:>?>>>>>>>>?>>>>>>>=>==>>>>?>>>?><7>?>>>>>>>>>>?>>>>?>>>?>>@>?????>@?@>><=>;==????@;??>=?????@???>>>?@@@@>@>>@@@;1@@@@@>><89?@@@=@@B@B@ABA;####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 NM:i:0 MQ:i:60 OQ:Z:AA=>?>6>>>?>>,==2=>9>>>>>>?=>>=>)7-(-5=>>>>>91?8')4$,9)$'0?(=7;&7;='.-86/<7+>5:<=@;.':;@@?(/1(/<@*?######## MC:Z:151M MD:Z:50A1T2A8A3A7T8A6A3A3A3A24A21 PG:Z:MarkDuplicates.1F NM:i:12 MQ:i:60 OQ:Z:AAFAFKKAKKKKKK,FF>>;<7>>=<<>;6;:=<========<===5<9<===<7=>><>=>>:===>>>>>>8<>>=>>=>=>===;>=>>>==<:>>>>>>>>>==>>=>>>==7>=<>>??>0>>=:=<=>)69>?>?>??>?>??@@9@########## MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:?======<=====<=<========<===8=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>=>=>=>;=>=>>>==?>>>>>>7=>?>>??>???>???>??????:????7??@>??>??@?@@?@@@@@@?@?@B?@?><98; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKAFKKK7FAFKKKKFKKKKKKKKKKKFFAFKAAFKFKFF< UQ:i:0 AS:i:151 +HJYFJCCXX160204:5:2118:5578:21596 83 5 156355226 60 151M = 156355092 -285 TTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACAT ######?@@@>?.8>>;/;??????>?=???:=?>??>>>??>==>>=;>>=>>>>>>>>>>>>>=><:==<;>>=9>=>?>>>>>>>>>>=<>>=>>=<=>===>>=>>=>=====<=<==<=<=<==<=======>=>>>>=>??>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:######KKAKFA,AFFA,AKKKKKFKKFKKKKFKKKFKKKKKFFFKKFAKKKKKKKKKKKKFKKKKKF7KAFFKFFAKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:2:2215:26260:22581 147 5 156355233 60 151M = 156355126 -258 CACGATGGGGAGATTGCGGTGAGCCGAGATTGCGCCCCTGCACTTCAGCCTGGCAACAGAGAGAGGCTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATT ######<4<*;A@//)&+AA=@2759:<-/.2$%6((A7:);)7<)>9(@?=56,-)/:/><68*(9.'96.96?-+7:?>??@=8=?>>>?<++878=>><<==>=/=;>;>9?>?>?>>?>?>>>>>>>>>?>>=::>==>>>:>><>: MC:Z:151M MD:Z:2G14A15C2A28A85 PG:Z:MarkDuplicates.1F NM:i:5 MQ:i:60 OQ:Z:######A7A,7KA,,,,,KFAA7??>>=>=>===>=:>==>>9=>===>====>>>>>>>>>>>>>>>>>>>>>>>=>=>=>=>>>>>>>5>>?>???????>???>???>??8;????????@??@?=.<@@?=?@@=@?@7@@@=@/=*<;>??AAAA;4A@@>#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKK?>>>?>=>=>>>>>===<===8<=<========<======>==>>=>=>====>>=>=>=>==>=>>>=>?>>>>>>>>>>==>>=>>>=>>>=>>8=>>>>>>>>?9>9>>=?>?>??>>????>@@>????>@@@<@@?@?7;00;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKK7FAKKKKKKKKKKFKKKKFFFFKKKKKKKKFFFKFF@@@@@?@?@@@:>?>??????=9???????>>?>>>>>>>>>>>>;==>=>=>>=>>>=>?>>>>>>>>>>=>>>=>>>=>>;=>>>====>=======<==<=<=<==<======<=<====<======<===>>>?>>?>?:?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:KKKKKAKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFKFKKKKKKKKKKKF=>=:'0>=>>>*9/>>>>>>>>>>=>>>*003=0:2(>=7>3884)0==8:2<>>==<=1>======.**=)==;;<===<==:=====9;>=<>>=?>>>>?>?6=> MC:Z:151M MD:Z:27T6G4C7G31T31G39 PG:Z:MarkDuplicates.1Q NM:i:6 MQ:i:60 OQ:Z:7FF,<<<,<<,F,A7FA7F7<,,,,,FA,,AA<<,FA<7,,7FKFFA,,KKKKF,<7KKKKKKKKKAKKF<,,,,F,<,,KF7K=8>/'*059*>7.09>10=>%.(.*3><.>>>>>>>>>>>>>>>>>>>9>>8=<7.=>><:=<2.=>>=>>>>>=8.===8>==;>=============<=:====>>=<===>>>>>>??==@? MC:Z:151M MD:Z:24C7T5C10T4C96 PG:Z:MarkDuplicates.1R NM:i:5 MQ:i:60 OQ:Z:#########################FA?=<>>>===>=>>>>;>>>>>>=>====>>>>=>=>=>=>-.<<>==>>>>>>>>>>>//8);;>;=>??>1?>;?>??39=<3.7.:<>?><>???@0:@4<0.<)14+@@@7/@############################# MC:Z:151M MD:Z:46T18C26C29T0C2C9T3C8T1 PG:Z:MarkDuplicates.1R NM:i:9 MQ:i:60 OQ:Z:AAFFFKFKAKFKKKKKKFKKFFKKKKKKKKKKKFKKFKKKKKKKKK,7FFFFAFKKKKKKKKKK,,7,?8@@@@@????<==??:????>?>?>?=>?>???>?@??????>>>==>>>=>>>=>>>=>>>;>>>>>>>>>=>==>=>=>=>>=>>>>>>=>=>>>>======<<+;====>=====<>=====<=>>?=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:7FKKKAA<77?;/%%(=??>7966)--0/%5@>80(????8<2.9/'+8'(>>=??;;>>>:<>>?>=>?=>+=2;,(;<8<7>>>?>><>>6>>>?>?>?>>?>?8>>====>>?>>>:=>>>>8>?>>>>@@=;;> MC:Z:109M42S MD:Z:7C33T27A60 PG:Z:MarkDuplicates.1B NM:i:3 MQ:i:60 OQ:Z:###################F,KFF<((,,FKKF7A<7,,,7,(;>)/4A;83;).979.)7?????????@>;?@???@???>>????8<8@:???>?>?>?>?>?>>?>?>>?>>>>>>?>>>>>>>>>>>?>>>>?>>>>?>??>>>?>?>>?>>>?>?;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:######FFFKA<,7FFA,,,777,>?>>>>?>>>==>?>>>>>>==>>>>>>>>?>>>>>??>>>>>>>>>>=>>>>>>>>>>>>>>>>>???=>=>>>???????????????????????=?=?==6?72??@>@@A@@@?@=<;@@@?@@@@@@9:2@=<09;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFKKFKKKKKKKKKKKKKKKKKKKKKKKKFFKAF?6>:;;0>=?>?>>>>>>>>>>==<>:>=>=>>>=>>>>;3>>>=5<;5>=>>=>===>>=>9>>>;<>=8>>==>=====<==<===>==<=;:;;====<<=<<=<<8=>>=?>?=@> MC:Z:151M MD:Z:0G150 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:#KFF<<,A7<,7AAKKKF7AA7,,KA,FA??????????=?1=>?>?>?>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>=>>>>>>>>>>>>>>>>>><=====>>===><>=====>======>=============>>>>>?>?=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z::>@@@@:8*09&@>.??=???:00.*:*?>9>7>>=7>>><>=(,>==6>>=>><<==)>>>>>>>>>>>>=>>>=>=>>><><>>>>>>=>======>>==<>=>===>====;=>===============>>>>>?>?2?? MC:Z:100M51S MD:Z:66A84 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AFA7A>@>.141+=>?@@?:>90?=1'4401??????:?>?<=>>>3?<<0*>?>????<9=?>>>>>>>>>?>>?>=>>>>;>>>>>>>>=>>>><>=>>>>>>>====>>>==>=<>>=<==<==>==>??==>= MC:Z:20S56M75S MD:Z:30 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:3 OQ:Z:AFFAKA@==?>>>=>>>>>>====<==<=<=<=<<=<===<=>=>=>>=>>=><===<>>>=>>>=>>>>>>>>>>>>>>>=>>=>=>=>>=>>>>>>=>=>>>>=>>>=>>>???><>@??>??;???=??>??>??.<:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFK;;???>>>>>=>>>>>>>>>>>>>>>>><>>9>>>?>>>>>>>>>>>>>>>>>>>>>,<>>>>>>>?>>7>=>??>?????>,-:8)9?-*6.56>:>7>=*/7;>9>??@>/?=:=< MC:Z:151M MD:Z:87G9T35T17 PG:Z:MarkDuplicates.1X NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKFKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKFKKKKAFFFKKKKKKKKK,7@@?;@@>?>????>?>?;>*>''???><9???????>>>=>>>=>>>=>>>=>>><>>>>>>>>>=>=>>=><>=>>=><>>>>==3>=;>=>>>>>>==>>===>=====<>=====<==<==<;=<==<=<==>>>>>???>=> MC:Z:151M MD:Z:27T123 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:=?>>>>>>>=>>>>><>>>>>=>>>>??>>>>>>>>=;=>=>>>>>>>>><>:=<><>?;7:>>-<<=8=.=:????<<><=><??==?=69@@@@@>@>&72.9:@>>??A@@?@@@:<<7=? MC:Z:151M MD:Z:127T23 PG:Z:MarkDuplicates.1U NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFKFKKFFKKKKFFKAFFKFKKFAAFK,AFFAF7AAKKKKFFFFKAKFFFAFFKKKKFKFKKFKKF><:86?@@@2<>?>?><5)=??7>5>=0????>??>>>>=>>>=>>=*>>>>>>>>>>>>>=>=>>=>=>=>>=>9>>>;<<:>=9>=>>==>=93&<>======<==<=;:*;:<(<=<=<===>>>>>>>?>>A> MC:Z:151M MD:Z:101A28G20 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:??@A7<8/>??@?<<8.=>?-?=>8)???>8>=;<9>>>>>>;>?=>>>?>>>>>>??>>>?>?>>?>>>>>?>>?>?=>>>>>>>>?>@>>>:< MC:Z:151M MD:Z:5T5C14T33T90 PG:Z:MarkDuplicates.1T NM:i:4 MQ:i:60 OQ:Z:##############AA7,77<.-?@@,-7<@>@=@9<);)==A???:'7>=.=69'<678.=';>?==9?=>99=5)>(7=9>/(-4????>=;-8?>>>:?>9=(>>>?;>>>98<>?>>?>?>>>;>>>>>?>?>>?>>???;8< MC:Z:151M MD:Z:21C23T7C6T90 PG:Z:MarkDuplicates.1C NM:i:4 MQ:i:60 OQ:Z:###KFA,,,,7,AA,A7FA,,AFF,,7?@>?>>?>>>>>??>>=>>>>>>?>>>?>>>?=>>>>>>>>>>>?==>>>>>>>???>@??@?@??@???????9;9?.:9;@?@A>?@?;@&218<>@A.@#################### MC:Z:151M MD:Z:113T31C4A0 PG:Z:MarkDuplicates.1I NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFFFFKKKKKKKKKKKKKKKKKKKKFKA7AAFFFKKKKKKA;-7);-;=@@@@?????@:<->?>?@??>?@>?>?>>?=?=>>><>?>>>>>>>>>:>?>>>>?>>>>?>>?>>>?>?>>?>>>>>?>>?=?>>>>>>>>>?>?>>?>>>>>>>>>??@>?<> MC:Z:151M MD:Z:8T3T14C123 PG:Z:MarkDuplicates.19 NM:i:3 MQ:i:60 OQ:Z:7FKAA7AA,<,<,AAKKKKKKKKKKAA,AKKKKKKFFAKFFKKKFAAKKKFK>>>>??>>>>>>>>>?<5>?>>>?>>>>=>>>>>>>?==>>>(=>;?-=>=>>?>8>7(3=>,=1.8=?>????<=:=??9;;:<6?@).)4%7:9:>.:<&26&&2.7<7.-<-?--99<@A@?=:?################# MC:Z:151M MD:Z:48T45T12T2A24T2T0C7T3 PG:Z:MarkDuplicates.1S NM:i:8 MQ:i:60 OQ:Z:>>>??==>>>>>>>>>>>>>>>>>>>>>>>>>>9>?;:>>>;=>>>>>>>>>>>>>>>>;>>??+;38>??;?<<>???<28???=99?=><<;>?5=9<.15>::>79::?/297?8*.?@################ MC:Z:151M MD:Z:71T63T2T8 PG:Z:MarkDuplicates.1X NM:i:3 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKKKFFKKKKKKKKKKKKKKKKFKKKK<>>>>>>>>>?===?>>>97=<>>>>><88>?=<>>=:>=>?>?>?>>5>5879'/-:;>?8/<=>>>==>>=>>;>;>>>>?>;??><=?@<<=<-0(<=(<=79??=?6.;?.>.>?7>==@-)06;@A@1>=<=?>>?>>>>=====;<<==<===<===<=====<=299==<<=<>>=>=>=>>=>>>=>>=>=>=>>=>>>6<>=>>>>=>?>>=>>=?>>>9>=>>=>>/<>=>>*<>?>????????>>?>?>;>?7=?9>85?@?>>0=;>59<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKAK,>>>>(7-&;=7>(7:--;>4,<4>>>?(&:+85+05=<7:097(89<-147############################################################################################ MC:Z:151M MD:Z:2T9A7A42T4A20G0C5A8A3A1A13A5 PG:Z:MarkDuplicates.1A NM:i:12 MQ:i:60 OQ:Z:A<,AFFAFFKKF,A,,AF7F,A<,,AKA,A;,@?)'2/8:6:;<:,.92=<=9')?>:9:6.%998(2.9;<9/4)/7<=,?72>?=;>>8=87>?=>>>;75=>;;>?>>>?=9<>=>>>>>?>><>?>>>>>>>>>?>?>>?=>??>;7< MC:Z:151M MD:Z:13A26T3A85 PG:Z:MarkDuplicates.1S NM:i:3 MQ:i:60 OQ:Z:#######################KF>?>=<<==<===<===<=============>>=>>=>=>=>>=>8;>;=<>=>;=>=><99>><>>>><7;===<>=?>>>>>=>>=>?=>?:>?:;=>==??:>????>?>??>?????9;@@?@?@?83>@?@=?># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAFKAFFKKK7FKKKFAFKKFKKKKF7FFFKFKAKKKKKKFKKKKKAFKAFKAAFFFFKKAFKKKKKKFKKKKKKFK7AKKKFKKK77FKKKAA89;>?:?=;A@@@A@==-.=??????@?>/6.67?>@??9=9>@=?==@>?=;7>>>>>>>><8?>>>>?>;==?>>=>>?>>?>>>>=?8:?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>@>>?8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I NM:i:0 MQ:i:60 OQ:Z:KKKAFF7FAAKKKFKKAA,,FKKFKKKKFF77,A7KFKKFA==>>?>==>>====<===<===============<==<=<=<=>==>>>>>=>=>>>>=>>>=>>=>>>>>>?>>=>>>?>>>>>=>>=>>:>>=>>=>=>=>>>>>>>??>?>??>?=>=>;>??>?>?>?>??>?@@9:?@??>=;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK==>>?>==>>====<===<===============<==<=<=<=>==>>>>>=>=>>>>=>>>=>>=>>>>>>=>>>>>>=>>=>><>>=>>=9=>=>>>==>>:>>?=??>?==???>??>?>?>8>=?>?@@@>?@??>;;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKFKKKKKKKKKKKKAKKKKKK>>=<===<===<===============<=>=>=>=>>=><>>>8<<=7><==>><=>>=>=>8=>?>>=>>=?>>>>><>>9>>.;=>??>?>?>?????=???>?>??>??<=>?8=>9:<>9829@<@@@0;?<:67>@>;### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKK?=<=?=>>>=>==<===============<==<=<=<==<===>>==>=>>>>=>>>=>>=>>>>>>?>>=>>>?>>>>>=>>=>><>>=>>=>=>=>>:>>>>>>=>=??>:=???=>?>?;;>??>?*=?=?@?@@?@@@><;<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKAKKKKKKKKKKKKAFKKKFKFKKKKKA?=<=?=>=>=>==<=8=-<===80===8<<;=<=<=<=<<4<9=>===)715<:<><&;=':=<9=<7<>58407>-98>=%73<>/<6:=>=>=>6=*7'69;*8:>3:>=::.<>8)6==?>?;<2:?3**;07<>95;;@?###### MC:Z:151M MD:Z:61C20G18A49 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKFKFKKKKKAF,AKKK<7KKK7AKFKKKFKKKAK7FAFKKKF,A,7AAFKF,FF,AFFAFAAFKAA7,.?:@?@:>@??6-??=.9@?@?@??@?@==@???><7@;<8>>>>=>>>?>>>>?>>>=?>??>>>?>?>>>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>?>>?>???=?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:A7KKKAFKKKKFA,FAFFKAFKFK<,KKA,AKKKKKKKKKKFFKKKKFAAKAFAKKKKFKFKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1209:3640:46261 147 5 156355318 60 151M = 156355156 -313 ACAGAAAGAAATCCGTGGGGTGCATGTGCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAG #####################;7/?8@1>@?@?@?8=?@?*<0?>???<;=>*0???/.??;?>5.?=9:>=:>=<<;05=:>=>=>=>>>>>>>>>=>=><=>.>>>=<><=><=<>>==<>===>==<====<>==??>>>= MC:Z:151M MD:Z:14A4C7T123 PG:Z:MarkDuplicates.1P NM:i:3 MQ:i:60 OQ:Z:#####################A<,@@<=>=;6:(=8>??:72'??>?>?>??=?=????>>:>>>>=>>>>>=:>>=>>>?>>>>>=?>><>>=>>=>>=8;<>><=:><>>>>>>>>>=>=>=======<<==<;<=<=<==<===<>==<====<>>=>>=>?>?8;> MC:Z:151M MD:Z:23T127 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKKFKFAAFA>;>??>>>>>>>>>?>>>>><>>==8=8===>=>>>>====>>?>>>>>>>==>>>>>>>?=>>>>>?>>>>>>>>>;>3<>;>>>>>>=>9>>=>>>79:<>?<>?>;<89?<=<7=9===@@@@=->?)<>>>=)719< MC:Z:151M MD:Z:128T22 PG:Z:MarkDuplicates.1D NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKFKFKKFKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKFK7FKFKKKKKKFKAFKFKKKA?>??==>??????)?==>>?@?????>@?>>>>=>>=>>=>>=>>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=>>><>==<====#>=<==<====8======>?>?=<= MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:#AFKFAAKF?>>>>=>=<=<=<==<======<=<====<===<==<==>>=>?>>=>>>?>>>>>=>>=>><>>=>>=>=>=>>>>>>>=>=>=>>=>>>>>==>>=>=>=>=>?>???=@??>?????@?>?=>????9>>>?2??@??><;;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKAFKFKKFAAAF7FKKKKKKKFF UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2116:13859:51377 99 5 156355338 60 151M = 156355623 436 TGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACA >?==??>>=>>==<=<==<======<=<====<===<==<====>>>>>=>>>?>>>>>=>><=><>>=>>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=????@??>?????@?>??>????:????@<@@>@@>><:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFKKAFKKKKKKFFFK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2211:25307:54752 163 5 156355347 60 151M = 156355413 217 AGAGAGAAGAGCAGGGATCCTGGANAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCTGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGG =>?===<======<=<====<#==<==<===>>>?>>=>>>>>><>>=>>;=>=>>=>=>;>>>>>>>>>=>:>>=>><=>==>>=?><5:=169==>05>?>????>@;;=?>??>=@?@+==>A8@@><9>? MC:Z:151M MD:Z:24A73A52 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKFFKKKKKKKKFKKKKKKKKKKKAKKKKKAFKFKKKKKKA<?>>>>>>>>>?>>>>?>>>>?:??>>>?>?>;?>>>>>?>>?>?>>>>>>>>>?>?>>??>>>=????@?>?@?>??@><>=5;?@?@>?@>@-:?@??>1:8:>@:7>??@@A@>@@=@8*8?2??>>=>>=======>==<===>=====<==<>=<=><===>=>=>>>>>>>>==>=>>=>>>>>>==>=>>:=>=>>=>>>>?>>=>>>>>?>=>>=>>>>9>???????>??>???>??>????>???>@?@A@@@@8@A>091=7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKFFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKA@==??>>>>>>>?>>>>?>>>>?>??>>>?>?>>?=6>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>=>>>>?>>>?;?>?>?>>?>?>>?@?>?>>9??????@???@?>?????;??>??@???@>@A@@A@?@@@>;9:6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKFKKKFKFKKKKKKKKKKKFFKA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2123:14235:45558 83 5 156355366 60 151M = 156355116 -401 CTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTAC ?:;<>?@?=@<>@????@?????;1???9>>>?=><6*<:;>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=>>==?>>=>>>>=?>=>>=>>>>8>>======<==<======<====<===<==<>==>==>>??=<<@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:??=>=<======>==<===>===>><=>=;>6<>=>><>;>=>>>>>>>>>=><>>=>>>>>><>>=><>=><>>=>>;:=>?>?????@-:??>?:.52:=??>?=?>??>??=?@?(7@@@?@@>?9;?A?A@*7AA8.;@90:># MC:Z:151M MD:Z:138T12 PG:Z:MarkDuplicates.1M NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKFK7FKKKKFKFKKKKKKKKKKKKKFKKKKKKKKKFKKFKAKKKFKKAKKF?>???>>>>>>>>>>>>>>=>?>======>>>><====>>>>>>>>>>>>>>><<>>>>>>77>-59<64<<9;==><<>>->>>/<>75;<9=>>>>>>>9>76<9>??8;-8=##### MC:Z:151M MD:Z:86A44T3A15 PG:Z:MarkDuplicates.1G NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFKKKKKKAAK,A??>?@@@@@?????>@?????>??>??;1<>??>?>>=>>>>>>>>>=>=>>=><><>==>>=>===>=>>=>>>=?>>=>>>>=?>=>>=>>>>9>>>=>>==<==<======<====<===<==<>===<<=>?>>=????>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKAKKKKKKKKKKKKKKKKFKKKKKKKF7FKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1115:23368:59798 163 5 156355374 60 151M = 156355455 232 CATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGT =;=>=?>9==>==<==<>=====<==<==:==<=>=>=>=>>>>>9>>>=><>>=9;>>>>=>>=>=>=>=>>=>=>>=>>>>>?==>>>????:>>???=?>>??>???>??>????>?<>>@>>A>@>@?@@8@?>>=@@@?<5># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKAKKKKKKKKFKKFKKKKKKKKKAFKKKKKKKKKKKKKKAKKKKKFKKKAFKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKFKKKKKKKKKFFKKKFKFFKKKKKKKKKKKKKKKKAAFKAFKFKAKKKF:6>9>??????>>>?>?>>?=>>,.>7.>>=?>>=;->=?>;<>>>>;;>==7<>9>?;5$89/><>>>>>?>>9;=;0==>?;>>=====>>>>=>>>=?>>>?>>>>@??>:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G NM:i:0 MQ:i:60 OQ:Z:###########A,AA,7,,7,<7A7,,A<,AAAA@??@)@:??:8?90(107=1=>?>?>>?=<>?>=>>(>72>;;;;/>=>>>=330>=*=<<0>=8>>>7>>;96><=<>><=:;.>->;9=>>7<4>=>==887?<2;2- MC:Z:151M MD:Z:0C9C2T7G8G2G1G115 PG:Z:MarkDuplicates.1P NM:i:7 MQ:i:60 OQ:Z:#######################################FAFKKF,FAKFA7F7,,<,9=@@?>@?@?????????@?@??@?>>:??????>?>@?>>>?>>>?>?>?>?>>?>;>>>?>>?>>9>>>><>?>>>?>><><>>>=>?>>?>>>>>>?>=>=><>?>>>?>>>>?>>???>>>? MC:Z:132M19S MD:Z:151 PG:Z:MarkDuplicates.1L NM:i:0 MQ:i:60 OQ:Z:#####FKKFFA77A????;?>?????????>?>??>??>9?>=??=>=>=>=>>=>>>=?>>=>>>>=?>=>>=><>>9>>>>>>>>=>>=>=>>>>=>>>>====<==<>===<<==>==<>====>==>>>?::= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:##A<<@?@???@?;<.>0=8?????>>>?>?>?>??<>???>>>>>:9>>=>=>=07>>>>><><;>>=:<>>>>>>>>>>====>=>?>>>><=>?>=>>==>>?<>><1;8<; MC:Z:151M MD:Z:4T11C134 PG:Z:MarkDuplicates.1R NM:i:2 MQ:i:60 OQ:Z:#####################K.??=<;??>>;:??:;?????;8?>>?=>>;;>7>>>>>>>9>>>>>>>>=<>>>>>=>>9>>>>>>====>=?>>>>=>>?>>=?===>?>>>>>?>=<; MC:Z:151M MD:Z:7A0C7A1A132 PG:Z:MarkDuplicates.1R NM:i:4 MQ:i:60 OQ:Z:###################KFAA<7KA<<<7KKKKAAFFAFAKKKKKFKA,KFFF7FAFAA7KF7AKKKKKF7F??@??A@>???>??>??>?==>>?>????????>=>=>>=>>><>;=>>=>=>=>=>>=>>>=?>>=>>>>=?>=>>=>>>>9>>>>>>>>==>=>=>>==<====<===<==<>===<<==>==<>====?>>>==?=->@> MC:Z:151M MD:Z:147T3 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:9>@>;@9@;@@@@?????>?>??>?????;???=?>?>?>??=>>?=?>>=>>>>=>>=>>=>>>>6;7<>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>======>==<>=>==>=>==<>>@??>>= MC:Z:151M MD:Z:12C138 PG:Z:MarkDuplicates.1N NM:i:1 MQ:i:60 OQ:Z:##KF7A;?93>>;?(&?>?(?????????=>???>>=><>><<>>>>>>>>>>=>>>>?>>>>>>>>===>>>>>>>9>>>>>>>>>>>>=======>===>=>=====>==;=<==>===>====>===>=>>????>?? MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:#KKKA7<7FF<,77AFAAA@>>>>>=>>===:>=====>6>6===<==<>>>>=>>>====>=<=>>>>>>><>=-><<:;<>>>>=>>-><>>>>>>49;;>>>%4>>>>>>>>6<>>>???;<:*>@?.5=28);-0:???=,>################ MC:Z:151M MD:Z:91A32T21T4 PG:Z:MarkDuplicates.1X NM:i:3 MQ:i:60 OQ:Z:AA@>><==<==:85.>=2==9#<=<======>8><>=>;=>>>;=<=>>==4==7<>>=9>>8?<=;=>>>8<>=>>=>>><%><>>8>??>??>???><6272<6>===>>=?@??>=>?@@?@>A?@@@;=@@1=3:<*==@97;; MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AA>@>>>>>===<>=<>><>>=>=>==>====>>>=>=>>=>>>>>>>>>=>=>=<>>>=>>>>?>>=>>>>??????>????:????????>??????<@@??????@@@?@@9@@;@?<@@A/;:?=AA?AA?A/)*2AA@?;?8>? MC:Z:151M MD:Z:140T10 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFFKKKKKKKKKKF7FA?(<>>867:>=>>>>=>>>>>>=>>=>>:><8,3===>>:>;>><>>>,<>>>>>>>:<:>>>>>>?>??:..9;?:???????8.>?5=?<<).:=)7=.:./<=:7).8389@############################### MC:Z:40S111M MD:Z:37G60 PG:Z:MarkDuplicates.1G NM:i:1 MQ:i:60 OQ:Z:AAFFFF,AKKAA@9A@@@=@@8=;9=8>0)40??;@>?>?>??;???<=??????????>??>?>>>9>>>>>>>>>>>>>>>>>><>>>>>>>>>>>>?>>>><==>>=>?>>>>?=>>><>=>=>>>?>>??===; MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:##################AA,AAFFA7FKFKFKF<<7<<7<,,<,KKAFFFFFAKFAFKKFAKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKK<=??2<:*/8?<<:?;4;>:?????:???<<9>????>?>==>>>>>?>>?>?>>>>>>>>>?>?>=>>>>>=>;;4?>?>?>>>>?>>>?>?>?>?>>>>=>;=>==>><5>=====>>>>>>>>>=>>>>>?<>?==>=3> MC:Z:98M53S MD:Z:111 PG:Z:MarkDuplicates.1G NM:i:0 MQ:i:60 OQ:Z:AF7@7??>4;:?@**?;?7?????????>>=>?=????<;=>>=>=>=>:>>=>>==;>>=>>>>=?>=>>=>>=>9;>>>>>>>=>>=>>>>>>=>>>>=>=>===<>===<<==>==<>====>===<<==>===>?>=>>>??=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FFKKFF=1->=0);.&8??:2)<-72-)7)=8-).,)+).',--(-.$8-$0%*4((/;;>>>=9(>2,;9::97-(1(-5<.<(.';;8-0<>=<.0'=<-',):>=0= MC:Z:151M MD:Z:19G1A5 PG:Z:MarkDuplicates.1N NM:i:2 MQ:i:60 OQ:Z:################################FFKFFKFFF,F7??>>5?>.?;.8@5@????9?@??????>?>?==?>>;<5?>>@=37>;<8=>>>>>?>>>>>>><>=8>>?>>>>>;?>;?6*=>9<>>?><>>?>>?::>>?>>>7??>>>;?@>0>> MC:Z:151M MD:Z:17G133 PG:Z:MarkDuplicates.1E NM:i:1 MQ:i:60 OQ:Z:7AFAA7AF<77A7A7,,,,,AKKKKKFA<9'1782;51)1<9?0+=8?/@?@??@;<<.16&;?>202<1?=??>?>80=*<&<90:>=>>=58<;(=2>>>=>>=>>>=>>>>>>3(0>>=><;->7:;:==>>=<:::9>>===<<==>==;<<8=<=<=;========,.959<<====269;==>9=<518=<&)).-<<=>>/9>?<=>>=%&'/4587)3*<;*-58>>68>;'69&':>6=>>??@???>;??6??<8<='&38=>>=>==<>>>>>=>>>=>>>====9=>==>>=>=>=>>>>>>>>=>>>=>>>>>=<8>>=>>>>9>?>>????>??>?????>>=?????>>>?@?@?@??2>/>9@9>'@=//?@>>9A///A?:AA>?0'2?AA####### MC:Z:151M MD:Z:150T0 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:>>9=>=>>>=>3===>>>>>>>==>>>>>>>>>>>>=8<>=>=>57>>;>>>>>?=>;;:>:?<<:?????<9???=>:???==>,=?@?@@@A@@@6'?9??@@<-<0?7@@@@AA@A:;::@A(0-.;:<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:AAF,AAFKKAKKKKKKKFAKKFKKKKKKKKKKKKKKKKKKKKKFAFKFKFK7>:>>2>=>>:>>>>>>>==:<>>=>><<>><>>>>,1.<7>>>8=>>;>>;>7?;<>><>7'1+63<;05<=-*:?>:=.7=77=>??@@@?A>=<8:%..09@8>99>A1?>@<######### MC:Z:151M MD:Z:125T17 PG:Z:MarkDuplicates.1U NM:i:1 MQ:i:60 OQ:Z:???@?@=9??>=?--806=9??@=89<:??>>?@;@?@>?>>:>?>;>?>>?<;0>>>>>>?>>>?>>5>>>>>>>?=>?>>>>>>?>>?>===>>>>?>>>>?==>====?>>==>>=>>==?>>>>>?>>???>>< MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1X NM:i:1 MQ:i:60 OQ:Z:#AAFA77,A>??>?>>>>>>>>>?>?>>?====>>>>>?>?>?>>>>?>>>?>?>?>?=>?=>>>>?>>4=3:??????@>??@???>??????@??>>??;>@?A@@>?@@<=?@@A??@@A:A=@A60.@@@>>;89# MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.19 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFFKKKKK?==<=========<=<==<======<==<>=>=>=>><>>>>=>>>>>?<=>>=>>>79;;<>>>>>==>=>>>=>74<>>;=>??>???@???==?>9???@>???@????8@>A@?9)=<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKAKKKKKKKAKAAFKKKKKKFKKKKKKK7>?>=>>>>=>>=>=>==>=>>>>>>>>>=>=>>>>>>=>>>>?>>=>>>>>?>>>>=>>>>9>>>>>>=>>>>=>?>????????>???>???@???????@???@????@???<@>@A@@@?A@?@@@@@A@@A@AA@@A?>;868 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKAKKKKKKKKKKKKKKFKKKKKKKKKKFKKK< UQ:i:0 AS:i:151 +HK3T5CCXX160204:6:2106:15179:32461 147 5 156355407 60 151M = 156355386 -172 GGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACA ####@98@=.@>@@A<@@?A;=,@?899=?:1@@@@A@@?@?@?;??:=.?@=>>872>??????>>>><5>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>>>>?>>>>??>>>>>?>>=>=>>>>?>>?>;<9: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:####A<7A<,AKFKKAAKFAA<,KA0>?################################################################################################################################################## MC:Z:151M MD:Z:24 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:A<,FF################################################################################################################################################## UQ:i:0 AS:i:24 +HM3G2CCXX160308:2:2211:25307:54752 83 5 156355413 60 151M = 156355347 -217 AAAAAAAACGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGA ?;;=>@@:$?@?@?>??>*=74??>?>?>?:??>???>@??=>>>>=?>=>>=>>>>9>>>>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>>>==>>?>>=?>>=>?===<<==>====>=<=====<====>===>==>>>>>=??=<=> MC:Z:151M MD:Z:8A142 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKKKKFA7,FKFFKFKFA,FA7KKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKKKFKFFFAA UQ:i:11 AS:i:146 +HK35MCCXX160204:6:1115:7304:33164 163 5 156355416 60 151M = 156355481 216 AAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAG <>=;=??>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>?>>?>?>>>?>>?>>7<>>=>>?>>>????>;??87?=??@<=?@?>?;7>0>??5??A=;;,<=@@??@>@@?@??=?<9??>?>?>?3??>???>??>>=?>=>>=>>>>9>>>>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>>>===>?>>=?>>>>?=>><<==>====>=<=====<====>===>=====>>>>>>?>?=A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKFKF>???==<==<===========<=>><===>>>;>>>=>>>>>?>=>>=>>>>9>>>>>>>>=>>=>>>=>>=?>??>???>???@???8>??@??>@>??<@????>??@@?@@A@?@@?@@?@8?:?A@@A@@@@A@A@AA:??9:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:@>?>?>=>>>>>>>>>>>>=>==>>>=====>>>>>>>>?>>=>>>>>>9>>>>>>><>>>>>>>>>>>>>=>=>>>=<>>?>>>>>>>?>>><>>>>@???==>?@????@??????????>*>4=::===<89==<=;='(2&1);:7==;>>>>>?9<1=<>=>.2;=>>)9>>=>>=><;=8>=>>>>=>>>3>=>?9<>=<>>???87;???77?;==?>=>???@?3;)))><;;@?A@@@A?*<(+5<=@A@@?@?>=:7= MC:Z:151M MD:Z:27A90C32 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAAFFF,F?;?>?>=>>>>==<==<=<=<=<==<====>==<=====>=<=>==>>>9=>>>;<>>=>>=>>>=>>=>>>>=>>>:=>>?>>>>=>>?>>>?=>>><>=>==>>?>>??@?>??>??>?>??@???@3>?>?>?>@@>@<@=?>197? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKFKFKFKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKAFFFAKK,A<>?>>=====<==<=<=<=<==<====>==<=>>>>?>=>>=>>>>9>>>>>>>>6<>=>>>=>>=>>>>=>>>;=<><>6=>=>>?>>>;;??@????@?>;?>=?>?=@><3>@>>@>9@?@?@@@@@@5?@>><=8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK=B+=.??@4<.2@??A>?(*A@>>.?@>==9)79=:91?@???@????????>>?>>>>?>>>?>>>>?>>?>>>>?>>>>??>>>>=?>>>>=?>=>?>>>>=>>=>>>>>?>?>>>?=>;:< MC:Z:151M MD:Z:7T143 PG:Z:MarkDuplicates.1G NM:i:1 MQ:i:60 OQ:Z:78;@A@@@@@====/85?1945<.==<4933:??;85<@??>>??>>><>>;>?>>?>>>>>>?>>=:>>>?>>>?>><=?>>?5>>>?>>>5=>>>?>:-=>?>>>>>>>=;;4.=?==>?>;==>>=>>>>????>>= MC:Z:143M8S MD:Z:0T150 PG:Z:MarkDuplicates.1U NM:i:1 MQ:i:60 OQ:Z:AFA7F<<7KKKKKKAFAA<7<7F77<<<7FFAKFF77<.?@@@@@@A@@?@?>@<??@8(:??????@<1>8??????>78)=>>?>>>>>>?>>?>?>>?>>>?>>>>?>/?;-?>5>>>>??>>>=>?=8>=>9>>>?>>>>>==>>>>>>?>?>;<>=.>>>?>@??>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F NM:i:0 MQ:i:60 OQ:Z:AA,KKKK>?:<.>=5??@8=?@???6@?@?;?@=?@?<:?????>?>??@???>>>>>>>?>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>=>>?>>>>??>>>>=>==>>>?>>>?>=======>?>==>=>>>==>>>>>?>?>???>>< MC:Z:147M4S MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:#KFFKKFA<,FF-999-95''=..(':0'446;0+6&(-7('-5.4&-1<'4.:=',(,2(<7-(0<:+(<:*7)8.-;8?<################################################################## MC:Z:10S141M PG:Z:MarkDuplicates.1C OQ:Z:A@')/'6:??@?;=4&:>>==>><=?299)8)>>>?>>?68=8++>;68=8,69;?>>(:+>=>>:>==>>=><>*?>?>=>;8==<=8>>>?>>=<>?>><>@@=:?> MD:Z:92T48 PG:Z:MarkDuplicates.1C NM:i:1 OQ:Z:######################KKKAKFFFF,,,,7?>><==<====/9=3=====%8<=;<====9>>>>>>;>=)=3<<>=>><>;<>=>>><.<>:/<>>?>>>?=>>=?>>>>=>>????.8>>??>??>=>??@???@???>1<>>=?>=<;;@->*637>;@@A@5>869 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AA?@@>@@@?7??>????>=?>??>>>??:????????=>>=>>>>>>=>>>>=>>>=>>=?>>>==>>?>>=?>>>>?=>>==>>?>>>>?>=>>>>><>=>>>===>============<=<==<<====<=>=?>>?=>?=>>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:7AKKKFKKKKKKK>>?>?>=>>>>>=><=>===>=<==<====8========<==<>>>=>>=>>>>=>>>=>>>?>>>>=>>?>>>?=>>>?>>>>=>>?>>>>?>=>>=>>=>=>>@???@???>?>?>????>?>??>??????@A@A@@A@@@@=<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1101:26504:57811 163 5 156355440 60 151M = 156355600 311 AGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATAAATACCTAA <:<>>?>=>>>=?>>=>==>>?>>>>>==>>9>>>>>=<>>>>>>>>>>:=>>>>=>>>=>>>?>>>;>>>?>???;>=>?>????@?@????@??????????@?@???@??????@?@;@@?@?@@;2>@@@=7=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFFFKFKKKFKKKKKKKKKKKKKKKKKKKKKAFKKFKKKKKKKAFKKKKFKKKFKKKKKKKAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKFKKKKA7AAFKFKKKF=@?@@A@A@A@A??@???>?@??@?>:?=<>??@???@???>>>>=>>?>>?>>>>>>?>>?>=>>?>>>?>>>>?>>?>=>=?>>>>??>>>>>?>>>>>?>>=?>>>>>>>==?===>=>==<======?>?>>?>>=??>>>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:FFF>@==AA@AA=A?=@>@@?@@@94<@>@?@@?>??>??????>>>??>???=??>@???>=>>@>>=?>>>>?>=>==>>?>>>>?>=>>>>>=>>>>?>>>?>>><>>><>>>>=>=========<=>=?==>=>=?=>>@??<;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:#FKKKAKF8>>?=><=<=2;>977:9=<====8===<===5;>==<>>=;=(;;==9>>>=<,:7<>><<>7:=4.'&787<>>>>:1=?>8).7*2<<>1=6=;2/8=??@???>=>?7??,:;???-/8*2-;??A@:@@;?@>89######### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AA<>>?>>==<=====>=<==<====8===<:==>=>>=>>>=>>=>;>>=>>>=<<>?>>>8<>>?>>>?=>;>?>>>>=>>?>>>>;>=>?><=3=>?=<==?@???>?>?>?4??>?>?:/<=@669=;@A@@A?@@>?@AA@>2>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKAFKKKKK7FKKKKKKKKKFKKKKKKKKKKKKKKFKKKKKFF7FKKFFFFKKKKKKKKKKK7FFKKKK<,AFA77<1&*2$(($3?>5;>>(?.>8;=993>4(<(6=><3>><9&>3<.<(&7>>>8=>;:-=*=8=<=;8=<<=;>=<..>==7=<.76:<=.3.=9/49=(=,6=&:-(<=>=>==>>8=====>>>>>?=??>?; MC:Z:61M90S MD:Z:21C41T87 PG:Z:MarkDuplicates.1R NM:i:2 MQ:i:40 OQ:Z:########KKFF<,AAFKA,,((,,,7FA;>9-1(;A<:=1*:?7;;?@A@?><8>?>0*/944??>???>?><=???@>?>>*=?>>>><>=>>>>>=:;>:><>>?>;.<>;>8>?>>=?=8>=>2><><=>=>==<>7.-&==?>=>>?8>???>;>= MC:Z:151M MD:Z:10T122A17 PG:Z:MarkDuplicates.1O NM:i:2 MQ:i:60 OQ:Z:##A?7;>A?A<>>3>82<:@@>?@@?@@@???>?>??>???>??>@???>>??@?=4@??>>=>>>==>=?>>>>?>=>>>>>=>>>=?=>>?>>=>>><>>>>>=>=>>==>=>><=?>>==>===><==>====>==?>??>?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:AAKKK?=?>?>>?>=>=<====8========<==<===<==<====<=>><>>>?>>>>=>>?>>>?=>>>?>>>>==>?>>>>?>#4==>>=>===?>>>?>>>=>=>=>>>>>?>??==<>>@?@??@???@>=?@?@@@A?@A?9=<;A MC:Z:151M MD:Z:82A68 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKK,7FKKKKKKAFKKKFKKKKKKKKKKKKFKKKKKFFFFAKKAKKKKKKKKKKKFAKKFKFKKFKK7FKK< UQ:i:11 AS:i:146 +HM3G2CCXX160308:2:1113:29751:2047 99 5 156355454 60 151M = 156355849 481 GAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATACAGGAGGGATGTACAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATGATAAATACCTAAGATAATAATTAATG >=>>=?><99<><5===8;=,9;===<==<===<==':;=5)==><.,88%19/<;=?>>=?=6<>?>>><928<;>>>;>=>>=<>=6/;:7>:/?>>=;9=<9>>8>=4:<50)829,:>5>-8>7;?/6'626<;*/7??A=/?;;;; MC:Z:65S86M MD:Z:36C13A73A13C12 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z:AAFFFKKF@??>??????>????>?>>=>>=?>>>==>>?>>=?>>>>?>>>==>>?>>>>?>=>>>>>=>>>>?>>>?>>>>>>>>>=>><=<==<<====<=>=>==>===>===>====>>>?>>>@??<=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AKKKKFFAKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2221:26098:66390 147 5 156355455 60 151M = 156355316 -290 AGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATNAATACCTAAGCTAATAATTAATGA @8;==>@9@@@@@?<:>@>@@@@@???>??????>????>???>??>>?>7?<>?>>>><>>>==>>?>>>>?>=>><>>=>>=>?>>>6>>>>>>><>>>>=>=>;==>>>=<=>=>===#==;===>====>==>==>@??;<= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:7KAFKFA<@>=>>=>===8========<==<===<==<====<===<=>>><=>>?>>>?=>>>?>>>>=>>;>>=>?>=>>=>>=>=>>?>>>?>>>=>=>=>>>>=>*????>?@???@????A@@A<@>:>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKAKFKKKKFKKKKKKKKKKKKKKKKKKAKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,AKFKKKKKKKKKFKKKKKFKKKKKKKKKKKKKFF7@A>@<<@???>>@=:@4<=??;;>5@?<=?@???@????@>>;;8=>;>>>>>?>>>>>?>>=?>?>>>=>>7;=;.,>?>>>?>?>:>>?>>>>?>?>>>+>>?;>??>?>??>>?>>>?>>>>>><>>>>?>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:FKFA<77>=<===<==<====<===<===>====<>>?>>>?=>>>?>>>>=>>?>>>>?>=>>=>>=>=>>?>>><>>>=>=>=>>>>=>=>??>????>?@?@?>=???@>??@????@??@:??A@@@?@?@@@?@?@A@@@@@=;:8: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKFKKAKFKKKKKKFKKKKKKKKKKKKKKFKKA UQ:i:0 AS:i:151 +HK35NCCXX160204:1:2120:30705:65335 147 7 4490610 60 151M = 4490477 -284 TCTCTGGGATCAAGCGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGA #8=:>?@@@@@AA@;@<@@@?>@@?@@@@@@@@?>?@???@@???????????@??@?:?==??=??=?=>?>>>??>>?>>>>?>>>>>??>??>>>>>>>?>=>>>>>?>?>>>>>>>>>>>>>>=>==>>=><>>>>>>>=>??;=;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 NM:i:0 MQ:i:60 OQ:Z:#F?=>?????????????>?>==<=>>>>>>>=<='=><>>>>>=>>>><>>?>>>?>>>>?>>>>>?>=?>>>=>>>=>===>=>>>==<============<<=<=====<======>=>>>=?>?=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:?????@?????????????>>?>9>>>>>>>>>>>>>>>>?>>>?>>>>?>>>>>?>>?>>>>>>>>>>=>>>>>>=====>>===>=>===<=<=====<=======<======>=>>=???=>?>>>>=?>>>>>>>?>=>>>>>>>>>>>>>?>9>>>>>>>>>>>?><>??<>>?>>>>>>>>>>@??????8>????<<<@??@@????????>;?6???@@?=;97? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAKFKKKKKFKKKKKKKKKKKK=>:?=:7=5<=;=51===9<=53;===.:8=5:>>=;>=;0>;>>=7&=<'=>8;?<8//<79<:>>><7:<=>=<>><8=;):==>><>;>>?>?>=9>=???>?;==??=?%09;>0;>>>*2*9@?8>@=9@<;29;>######## MC:Z:151M MD:Z:49A65T35 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:0/)/..'.(<:<<=>2'8=38=>=<3%(<%,0><(*$+-79>--;(,,,8-7<98(2($$0(($1+%;:3;>><:<>####################################################################### MC:Z:19S132M MD:Z:5A3G29T3T4T9A2G0T3A1T20G1T3A3T12T15G2T5A1T5G5 PG:Z:MarkDuplicates.1N NM:i:20 MQ:i:60 OQ:Z:,AF,,,<7,,,,AFFAKF7,7FAKKKKF7,,A,,?=>?@>>>>>><<==<====><8==<==<==<=<=====>===?>=>>?>>>>>?>>?>>>>>>>=>:<>>=>><=>>>>>>>>>>>>>>>=>=<=>=>=>>>>>>>=>????>?>??>????=?>???3*>?@@=@?@<=;9;<@A(AA>AA?@?@AAAA@@:@A?@>=?@:;>@@@@@A@@@@?>>>@?>???@??@?=??>??=>?>?????>??>>>>>9>><>>>4>>>=>>>=>=>>>>>>>=>>>>>>>=>=6==>=>>>>>>>=>>>=>===>>>>>>??>=8; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:60 OQ:Z:A<:=>?@@@@?@@@????@?:??>?><>?@=>>>?><<>>?>>?>>>>>>>=>>=>>=8>?>>;><><>>>>>>>>>===>>>>>=<>===========<====<;:========9:=====5=====>>>>>??>;@? MC:Z:60M91S MD:Z:151 PG:Z:MarkDuplicates.1R NM:i:0 MQ:i:24 OQ:Z:<?>8.)6;1/184<:?=>967<97).)7?==?<<7@>>>>=,>?7?=>>?=>>>>>>>>>>;>>>>>>9;;>>>>>>>>>>>;=;5;,=6<,8)?>>>><2==>>;>>>>>>====8==?>>=====>>>=>>>>>>>>>?=5>;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:#####KKF<,,<@?@@@@@@:0@?:??????????>>????@???@?????>>>>>?>=?>>>=>>>=>==>>>>>?>>=>=>>>>>>>>>>==>=>>>>==>>>>>>>=>>>==<===><>=====<=====<======<====>>=>>>?>?<@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K NM:i:0 MQ:i:60 OQ:Z:??>=>===>==?<8==<==<==<=<==>>>?>>>?>>>>?>>>>>?>>5>>>>>>>=>>=>>>>>?>>>>>?>?????????>?>???>?>???????>?????>?>??>?@?@@A?@@@@@?@>@@@@@@@AAA@@AAA@A@=>86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKFKFAFKFKKAKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:8:2202:10805:40530 99 7 4490671 60 151M = 4490699 179 ACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCT 99;?>>>?>>>??>>>?>>>>>=====>>>>>>>>====;,98?>>?=7>>>>>>>>>>=?>>>>==<>>>=>>>>>>>?>>>>>>>>>>?>>?>>>?>9>??@=<1->>????@??==>?????>;9>>=@@@>@?;@1%+/768:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:?@@A<.<7/=96,.3-/(<9=>/88-5/9<-<><7??9>><(7?=>>;2>>;;;<-3>><87->?628->>91,959:>>>;>>>>>>9>>>>:<>>;>575;71;<<+579- MC:Z:151M MD:Z:14T2T9T123 PG:Z:MarkDuplicates.1X NM:i:3 MQ:i:60 OQ:Z:##A7AA>1AA8<>@A@@A@@@@?;?@@@A@?@@@@?@@7>?>>?@???@=?>????????????>>?>??9??>??>?>>>=>>>=>=>=>>=>>>>>>=>>>>>=>>>>>>=>>>>>>=>>===>===<><======8<=====>?>?><= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P NM:i:0 MQ:i:60 OQ:Z:##KAAA,FF=8AAAA@>?A@?A/?/A@?A@@@;>??>?>>?????@>>;????????????>>?>>=6<>=<==<>>>=>>>=>=>=>>=>>>>>>=>>>;<=>>>>>>=>>>>>>==>>==>===<=<=<====8<======><=?9>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:##A,A?>@???????@?@?????>?>>>>>>>>>>>>>>>>>>?>>>>>>>?>>>>>>>>>>>>=>>>?>;>>>>>>>?>>>>>>====>>>?=>>=======>>9>>>>>>>>>>>>>?>???<>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:7AFFKFKKKKKFKKKKKKKKKKKFKKKAFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2223:17198:11418 163 7 4490683 60 151M = 4490785 253 GCTAATTATTTTATTTTTAGTAGGCTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTT =;==>=>>====7=====>==>==,9<;;7=;<=>>>=?>>>>>>>7>>=<>>>>=>=;<>=>=>>>>>><<>8==>=>=>>=>>>>>>=>>???>???36<=??>=??>>>?>??>??>?><=>:<@;???>@?@?>A?>:@@??>9:8? MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFAFKFKKKAKKKKKKKKKKK77FAAAKFKKKKKFKKKKKKKKAKKFFKKKKKKKFFKKKKKKKKKK?@@@>>A>@?;>@???@??@@?@??????????@????@>>>>5?>>>?>>>?>>>?>>>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>==>>9>>>>?>>>>?>>>?>>>@>?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F NM:i:0 MQ:i:60 OQ:Z:KFAFFKFKFAAKAKF@>=A<>9.@@@A@AA?@@?@@@A@@?@????>@??????????>>=?>>??>>>>>>>>>>>=>><>>>>>>>?>>>>>>>>>>>>>?>>>>>>>==>>>9>>>>==>>>>>>>?>>>@>>=>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A NM:i:0 MQ:i:60 OQ:Z:FA7<7A>?@>@:A@?A@?>@@@<=@@??>>?????@??<>????????>??>>?=???:?9>>>>>>>=>>>=>=>=>>;>>>>>>=>>>>><>>>>>>=>>>>7>=>>>>>>=>;=>==<====8<=#=======<====<==<=>?>==?, MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:KKKAFFKFF>>?@?>?>>>>>??>??>>>>>>>?>>>?>>????>>>>>>>>>>?>>>>?>>??>?>>>?>>>?>>>=>>>>>>?>>?>>>?>>?>?>?@@@?==@?=?>?????@????????=??28????@?@@@A2@7?:@>?>@@?><;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKFKKFKKKKKKKKKKKKFFKKFKFKKKKKKFKKKKKKKFKK7FKKKKKKKKKK7F7FAFAFAKKKFFAFK UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2124:30391:27521 99 7 4490689 60 151M = 4490851 313 TATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAA >?>????>>>>>>==>=======<==<=====>===============><=<==><=<=>>>>>>=>>>>>=>=>>=>>>>>>=>>>>>=>>>>>>;>>>>>><>>>>>>=<>??=?>??>?:????@????@>?>=@?@@?@>/>?<;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKFKFKKKKKFKKKKKKKKKKKKKKKFKKKKFFF;;=:?@@?@>@?@???>???>?>>?????@??>???????>>>>>==>=>>>>>=>>>>>>>=>>>=>=>=>>=>>>>>>=>>>>>=>>>>>>=>>>>>>=>>=>>=<==<=<=<====8<=========<====<===>>>>????>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:5:1119:17523:28576 147 7 4490692 60 12S139M = 4490536 -295 CCTGGCTATTTATTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGA ############A>-./>@?=A@@A@@@@@@@A@@>A@@A@=@<=@@=?>8??@????@????=@???=???@?>-@????>?@>4=6=7=8>?<78;>>>>>?>>>?>>>>>=>>>?>>>>>>>>>>>>9>>>>?>>>>?>>>?=>?>;< MC:Z:151M MD:Z:139 PG:Z:MarkDuplicates.1C NM:i:0 MQ:i:60 OQ:Z:############KA,,,??@AA@@@@>@?>@@?@??@@?@??????????@????@????=@??>?>>>?>>>?>>>>>>?>>?>>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>>>9>>>>?====>>>>?>>>>>>>>>?>>>>>@@?>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B NM:i:0 MQ:i:60 OQ:Z:7AA,FF@A57A>@@@7>:=/=1@??@??@??;>=??>??@>???@????;@=?>?>?>?>>>?>=>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>>>9>>>>?>>>>?>>>?>>>?>>>>>?>>>>>@??>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 NM:i:0 MQ:i:60 OQ:Z:#A7FKKF<7FFKKF7FA<7A7KKKKFKKKFFFFKKFKKKFKKKKKKKKAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:2218:31223:52309 147 7 4490697 60 75S76M = 4490207 -566 GGCGCACCTCCTGCCTTGGCCTGCAGAGTCGCTGTGAGCACCGGTGCGCGCCACCACAGTGGCGGATTGTTGTGCTTTTAGTAGGGTTGGAGTGCTGCTAAGGTGCCCATGCTGGTCTCACACTCCAGGGCTCGAGTGATCGTCCTGCCTC ###########################################################################>;/>5>?>>>;;0;9/68&*>=*<::&$03*3*.0=1><6/:=+-);2>98=%9=1/%'9;/=>9,%/**0::606 MC:Z:151M MD:Z:18C8T17A12A7C9 PG:Z:MarkDuplicates.1R NM:i:5 MQ:i:60 OQ:Z:###########################################################################A<,F7KKKKKFA,FA,A7,,FF,A<7,(,<,7,,,F7KFA,AF7,,<7FA;?@;@>?<*?????@??>?=??????????>>?=>>>>>=>>>>>>>=>>>=>=>=>>=>>>>>>=>?>>>=>>>>>>=>>=>>>=>>>>>>=>>===><====8<;========<====<==<====>==>>>?>>??<=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKFFKKAKKKF,KKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:8:2202:10805:40530 147 7 4490699 60 151M = 4490671 -179 TTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTAT =<8:>@<@@@=9:AAA>AA>8@A;:.>@@@@@@@@@3@@@@@@>7=8??@???????@???>??????>??????>????>??>?:>>>>>>>>>>>>?>>>>>>>>>>>>9>>>>>>>>==>>>?>>>?=====?>>=>=?>>>@< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D NM:i:0 MQ:i:60 OQ:Z:KAKKKKFKKKF<@@@??>>?????@??>????????????>>?>>>>>>=>>><>=>=>>>=>=>=>>=>>>>>>=>>=>>=>>>>>>=>>=>>>=>>>>>>=>>=><>=====8<=========<====<==<====>===>>?>>>?<><@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKAAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:6:1206:11941:31986 99 7 4490700 60 151M = 4490828 279 TAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATG =>=>??>>>>>><==<=====>=============>=><><==>=>=>>>>>>>=>=>>>=>=>>=>>>>>>=>>=>>=>>>>>>>>>>>>>=>>>>>>=>>>>=>=??>?:????????=?=????>??>?.@?@@@@:@A@@@?>=:## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKK,FKKKKK7FKKKKKFFF## UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2118:19350:53715 99 7 4490703 60 151M = 4491013 461 TAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTC >;>???>>>=>><=====>================<=<===<=<>>=>>>>=>>>>>=>=>>=>>>>>>=>>>>>=<>>>>>>>>>>>>=>>>>>>=>>>>=>=>>=>9>?????????>??=????@?????A@@@=?@@>=;<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKKKKKFAKKKKKFA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:2118:3234:9730 163 7 4490704 60 151M = 4490953 400 AGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCACGGAAGATTTTAAAAATAAAAGTTATGTTCC ;:<=>?>>=>-==>=>=?>>=>>>>>>>=>===99>>><>>>>>>>>>>>>>>>>>9.=8>>>>=><:>>:5>>?==??>?=???>??>8.;>??>>?>*;.;>>=?6>=:>@=4;;1=:''+@?4@/9/>;0@A@=BA############ MC:Z:151M MD:Z:120A30 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKK,FKFKKKKKKKFKKKKKKKKKKK?==>??>>??>?>>>>>>>>>>?>>>>?>>>>>?>>>?>>>?>>>?>>>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>??:????@????@???@???@?????@?????@@@@A@@A@@@@@@A?7<98= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKK?@@@@@?@??????=????>>?>???=?>???????=>>>=>=>=>>=>>9>>><>>>=>=>>=>>>=>>>>>>=>>>>>>=>>=>=<=>>>>7=>9,=;>><;<====<=;:===<5=====>====<=>==<>=>>><>?=;=; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKAKKKKKKKKKKKKKKKKFKFKFFKAKKKFKKKFFKKKFKKKKKKFKKKKKKKKKKKKKKKKAKKKKKFKKA,FFKKAAKKKKKKK7AKKKF3?;.<6@@?@?=>>?5:=0/'.6>4&0.9(=??@???@???:;;-?=?=8??>1;>&(,'9>>870>>>89>=>?>>4?>>??>>>8>>>;>=;?>??><>>>(>->8>>68/?<<< MC:Z:151M MD:Z:5A5C15A2C23C83C12 PG:Z:MarkDuplicates.1H NM:i:6 MQ:i:60 OQ:Z:##A7A,,AA7,,,<<,,AA,,7<,A,A,<,,A::<>?@A@@@@@@???>?>?>?7>5?>???????>???????>>>=>>>>>>=>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>>>>=>>>>9>>>>>>>===<==>>===>=>==>==;==>======>====<=====>>>>>?>?>?? MC:Z:151M MD:Z:136C14 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:FKFKKKKFKKKKKKKKKFKKKKF7A7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKK52??>??@?<<;;<>>>>:989<)/;>>>>>?>>=;7)>>8>>>9>;<<>>3><0=93=>>><)6>>>;===>>?>>>?:>>=>-><>;=>>==6>;>=>>><>?=?>9= MC:Z:107M44S MD:Z:1G16A110C21 PG:Z:MarkDuplicates.1U NM:i:3 MQ:i:60 OQ:Z:>>>>=>>>>>=>>>><>>>>>>>>=>>>>>>=;>>>=>=>>=>9>><>>>>>>>=????>??>?>?=????>>?:;??@>@@@?@@@@@@>@@@39;5<> MC:Z:151M MD:Z:123C24C2 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:AAFFFKFKKKKKFKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKFAFKK>:?=>/;(?@?@:6'?>???>?=?????>>>>??8>>=>>=>>>=><=:<>=>>>>>>=>>=>=>=>>>>9=>>>>>>>>>=>>>>=>><==>=?=>>=>?=>==<=>==<=<====<<=<===<==>>>>>>>==??>=@> MC:Z:44S24M83S MD:Z:3T119C27 PG:Z:MarkDuplicates.1N NM:i:2 MQ:i:0 OQ:Z:#####KK>@>>??>?>>;=<>>==>>?>=;>>>?>>?>>>?>>/=>;8<>>???>>>?>>=>6>>?>=-8??=?55?7394>==89>>>??>?@:??.)=-6<@<=6>8<79;,87?@?<*.8/8.81@>/888:@####### MC:Z:151M MD:Z:120C7T19A2 PG:Z:MarkDuplicates.1H NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKAFFKKAFKFKKFAKKKKKKKKKKKKK7FK>:@A@>@A>@@A@@??=?@?9@???@???=498?????@???@????>>>>>?>>>>>>>>>>>>9>>>=99>>>?>>>?>>>?>>>>>?>>>>>?>>>?>>?>>>>>>=7>>>>>><>>>>;>>>>>?>7>>>>?>>?@==?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:#KKKFFAAKKKFKKAKKKKKKKAKKFAKKKKKFKFF>>>>===<=======<==<======<=====<==========>>>=>>>>>>=>>>>=>=>>=>9>>>>>>5<>>=>>>>=>>=>>>>?>>>>>?>>>>>>?>>??>??????>@??9??@?@@@@A@??<<?>?>??>??????>?????>????>>=>>>>>>=>>>>>>=>>=>=>=>>>>9=>>>>>>>>>=>>>>=>>=>>>>?>>>>>?>>>><>?==<=<====<==<===<=========<<====>=>?>>>?>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1114:6289:10345 83 7 4490741 60 151M = 4490372 -520 AAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAG =><=?<@A<@@@?@???@??>???????????>???>???????>>>>>>>>>>>>>>>>>>>>=>>>>9>>>>>>>>>>=>>>>>>>>>>>>?>>>>>?======?>=====>====================<=====>>?>>??>>@? MC:Z:151M MD:Z:113C37 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:AA<>???>=>>>>=<=<==<======<=====<===<========><=>>>>><>>>>=>=>>=>9>>>>>>>>>>=>>>><>>=>>>>?>>>>>?>>>>=>?>>;>=>>>?>??=>??>???=?>???>>??>??;?@@@?@6?@??=9>?@;@@@@>?????3???>??>?=????>??????>>>=>=:=>>>>9=>>>>>>>>>=>>>>=>>=>>>>?>>>>>?>>>>=>?=55>=>>>>==>=>=><=========<<=====<=>==<=<==<==<===>=>>>?>?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:KKKKAAFFAKKKFKKKKKF7KKFFKKKKFKKKKKKKKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF@6<=@1;@4?????;<=????=>>=?=>?=>?>?>?=>>>>9=>>>>><>>>:;=>>=>>=>>>>?>>>>>?>>>>=>?>>=>=>>>>=>>=>>>=>>>=>>===<<=====<=8==<=<==<==<==<=<===>>>>>>?=>=?> MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:#KKKFF7AFA7>>-8;@7@=@@@@:><89:??@?????8?>@>@@;???9)??>?>???@???@>>>??@??>>?>?>;?>>@?>>>>>>>>>>>>>>>>>>>>>>>>?>>>>>>?>>??>>?>>?>?>>>>>>>>>>?==>>>>>>?==;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X NM:i:0 MQ:i:60 OQ:Z:#KKF7A?@@>@@@@@?;???>??????>??>?>6>????8=>>><<>>>>=<>>>=>>=>>>>?>>>>>?>>>>=>?>>=>=>>>>=>>=>>>=>>>>>>>>========<=>==<=<==<==<==<=<========>>>==>?>?=@> MC:Z:151M MD:Z:85C65 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AF>>>>?>>>?>>>>=>>>=?>>>>>>>>>>:<6>>>;<>>>>?>>>?>>>?>5+8>@????,:?:>@=>?7????@,5<7-=<;4>=79?(;'.-3;<>################ MC:Z:151M MD:Z:81C68T0 PG:Z:MarkDuplicates.1I NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKFFFKKKFAKKKKKKKKKKKKKK7,?<9:A9<<@3;;<@4=@@@>?:?4*4?>?>>>=<:?>4==)8<>>=>><>>>>=>;>>=>=>>:>=>;9<9>==>;>>>>>>=<=<<>>==;>7=>=<><==<==(<4<<;=8======<<=<===>?=43;= MC:Z:151M MD:Z:80C70 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:77<@??<@??=@@@?????@???@?@@???@?>@??????@@??>?>??>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>??>?=<=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H NM:i:0 MQ:i:60 OQ:Z:#######FA77,KFAAAKKKFFKKF<7<7FFKFFF7,AA7KKKKFAKKKAKKFAKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1111:14154:56458 147 7 4490781 60 151M = 4490402 -530 AAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCT ??::>?@@@@@@?>?@@?@@?@?@?????:>=>???9???>??>9>??>????<==>???>>>>=>7>>=>=>>>>=>>=>>>=>>><>;=<>==>>>>><=?>>=>=>>=>>=>>==<===========<===<=<==>=<===@>?=>= MC:Z:151M MD:Z:73C77 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:FAFFKFKKKKKFFFFFKKKKKKKFKKKKKKKFFKKKAKKFKKKFAKKKKKKKKFAFFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKFKFFAKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYN2CCXX160123:1:1108:11140:31054 147 7 4490782 60 151M = 4490536 -397 AAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTT ##49<7=+@A??A@@B@@AA@A@?@A@@9@?<6A@@@@??;@@@@@A@?@@@@?????@???@?@@???@??@??????@@???????>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>??>>>>??==<== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L NM:i:0 MQ:i:60 OQ:Z:##AKF<<,KKAAKFKKKKKKFKFAKKKKFKFA<=;*0*-??>9=9:>@=5???>?>?9;9?>????@<;8>?@??<==>?>>==1>>>>:><6<>>5>>>><<9<>===><>==>?>>=>=>>=>7=>==>=>>=1=======<===<=<=<>=<8;<><=>?>;@@@<>??=?6>=:)>?>>>=>>>>?>>>>>?>><;=>?>>=>=>=>7=>>=>>>=>>>>=<>=>==><<=>=>?>><>==>===<=;<=<===><5=<===<===<=<==>=<=>=?>>7?>=;?> MC:Z:151M MD:Z:69C80C0 PG:Z:MarkDuplicates.1Q NM:i:2 MQ:i:60 OQ:Z:?@@@@A@@@@@?@?????:????>?;??????@>>?>>?>>>>>;>>>;>>>>=>>>>>>>>>>?:>>>=>?>>??>>?>>?>?>>>>===>>>?>>>>>==>=>=>>=>>?>==>>>=>>>>?=?>;= MC:Z:151M MD:Z:67C80C2 PG:Z:MarkDuplicates.1U NM:i:2 MQ:i:60 OQ:Z:<>???>>>=>>>>==<==<=8==========<====>=><>>=>?=>=>=>=>>>>>?>>>>=>>>>=>>>>>>=>>>>>=>>>>=>>=>>=>?>>=>=>>=>>=>?=>>><>????=???>>??>?>??@???@@@@@@>7<9>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKFKKKKKFKKKKKKKKKKKKKKFKKKAKKFKKKFKFKKAF UQ:i:0 AS:i:151 +HK35NCCXX160204:2:2218:17777:18010 147 7 4490792 60 151M = 4490536 -407 ATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATA :68;>@=@AAA=8@@A@@:@@;8A@@@;?@@@A@@@A@????@?????@???@??@?????@?????????????>??>???><>>>>?>>>?>>?>>?>?>>>>>?>>>>>>>>>>>>>>?>>?>>>??>>>>?>>>?>>>>>>??;=>< MC:Z:151M MD:Z:62C80C7 PG:Z:MarkDuplicates.17 NM:i:2 MQ:i:60 OQ:Z:7KKKKFAKKKKA7?@@?@@@?7@@?9?@@?@>:??>>????>??>>*??@?>9??@????>?@??>?=>>>>=>>==<>=>=>9;>>>===>>>>>=>=>=>>=>>=<>3====>=>>>>>>=<===<=<==>=<==<>======<=8==???;@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AKKKKKKKKKKKK7KKAFKKKAKFAKKFKKAKKKKKFA,KKKKF7KKKKKKKKKKKKKKKKKKKKKKKFFKKKFKAAKKKFKKKKKKKKFKKKKKKKKKKKKAK7FKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1112:27407:17149 83 7 4490794 60 151M = 4490450 -495 TGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGA =;;=9?@=??@?>@?=9<=>==:$???>????>??>????<>>>:>?>>>>=>?=>=>=>>>;=>>=>><=>>>>>>>>=:==:8>>==?>>=>=>=:>>==.===>==========<<==<=<==>=<==<>========9>=1>?=>:> MC:Z:132M19S MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:FKKK?>>9=>><9=>>?>9>44*4>>>>,><>>?,4+,=>4=>?>>>(=6>,8>6<8/>6>;969;?5?@?><==>@7>@?@=>?<>??=:->9???????7@@??######################################### MC:Z:151M MD:Z:51T72T12T4A8 PG:Z:MarkDuplicates.19 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKK?+?;%A@A@AAB@?@@?@@?:8@@@@:A@@?@>?@?@>@>????>??>???>?????????>>?????>???>=>=>>=>>=>>>>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>====<===<===>=<>>=>=>=?>???>?: MC:Z:151M MD:Z:46C80C23 PG:Z:MarkDuplicates.1O NM:i:2 MQ:i:60 OQ:Z:##AFKF,A7(KFKKKKFKKKKKFA<77KKKF7KKKKKKKKKFKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFA< UQ:i:84 AS:i:141 +HJYFJCCXX160204:6:2204:12236:71699 147 7 4490810 60 151M = 4490569 -392 CGTGCCTGGCCTCAAGGAAGATTGTAAAAATAAAAGTTATGTTCTTGGNTGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGG 75;9=?@8(*@?=@A;?@@>@=/&A@@@@@A@@@@>?@??>?>???=?#?;???>?????????>>>??>>=>?>>=>=>>=>>=>>=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>>>=><>>=<=>=>=9=>=====?==?>??>9< MC:Z:151M MD:Z:23T20C3A76C25 PG:Z:MarkDuplicates.1K NM:i:4 MQ:i:60 OQ:Z:FF;?9<599(-->97>*<->))?=>7<=0),96<67=5/%((/39.)-//1>5<>4>2.8)+<7;4-=-,0)0<+5<>5-3+7+>>(5>+5;<.*+*50; MC:Z:151M MD:Z:7T7G11A2A1T7C0T3T16C37T11T24T13 PG:Z:MarkDuplicates.1U NM:i:12 MQ:i:60 OQ:Z:##############################################A,7KKFF;?>>?>>>>>?>>>>>?>>=>>>?>>>>>?>>>>>><;>>>6>>>>;>>?==>>:>?>>??>>?>>?>?>>>>>?>>>>?><><>>>>;???=><<@@;=?=>;=8=,5=?:>?????)=-:;77.7@?;,.<-)((7?;6773 MC:Z:151M MD:Z:36C80C33 PG:Z:MarkDuplicates.1F NM:i:2 MQ:i:60 OQ:Z:AAFAFKAKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKFAFKK7FKKKFKKKFFKKFKKKKKKKKKFKKKKKKKKKKKKKKKKFKFKKKFFFKKFFAAKKAFKFFFFAA,+/89<->?6+4;(-,9,*5+(''$58+5=5>5).77,($&,(4-,9>';&>,(,1-,&:@?;@@'''6:=:=).:7)/)>>>98??&=############################################################ MC:Z:151M MD:Z:15T7A0A0A13A0T1T1T23A30A1T8C5C9T5T15C2 PG:Z:MarkDuplicates.1I NM:i:16 MQ:i:60 OQ:Z:AA<,,>@@?98-.;6))>:07(2>;:0?<9=?>>=6@??=8<867659=<9/>>>>>>=>>;>>::>>??>>>9>>4>>??>>?>>>>>>>>?>>>>>==7=?=>6;= MC:Z:151M MD:Z:2T6A12A9T18A4T94 PG:Z:MarkDuplicates.1L NM:i:6 MQ:i:60 OQ:Z:######################################AAAKKF7<,,<<,,F<,<,7FAA,KA>?>??><>=>=>>==>=>======>===>==>>>==>>>>>=>>>>>;>>>>0><5>>=>?>=>>=>>=>><;(<<>>??3<>>>>>??>????@<==??6399?9=@/:<9@@@@@@/8?::@0@:0>??0+5>AB6@@?7;5>< MC:Z:151M MD:Z:32C80C37 PG:Z:MarkDuplicates.1O NM:i:2 MQ:i:60 OQ:Z:AAFFFFFKAKKKKKKKKFKKKKKKKKKKKKKKAFKKKFKKKKKKKKKKKFFFKF7FAAKKKKKKFFFKKKKKKAAFK7,AAFFKK?@A>>BAA><@?>?;?@@@@@@?@@?@@@@@?????????????@??????@??@@??@??@?@????>@>>>?>>?>>>??>>>>?>>>?>=>>9>>>>>??>>?>>>>>?>>?>>>>>>>?>>>>9>?>><<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S NM:i:0 MQ:i:60 OQ:Z:KKKKKKKF<>>>=>>>====?======>=>>=<>>>>=>>>>>>=7>>>>=>>>>=>>=>>=>?>>=>=>>=>>=:==>=>>>>>>>?>>>>>????;><@??>>-<6<=???>>:?@<@@@@??A?@?@@><@@A@=@@A?@555?:<9=:75? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKFKKKFK?>???>>>?>>==>>=>====>====<====<======<====>=>>>>=>>=>>=>?>>=>=>>=>>=>>=>=>>>>>>>>>>>==>>=>=>>?>>>>>?=>>>?>=<>?>???@?>?@??=??@??@????@@@@=@@@;@@?>;::? MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1J NM:i:2 MQ:i:60 OQ:Z:A?>>>?>>>>>>>>>>=>?>>>>=?>=>>><>=>>>>>>>>>>>>>>>>>>>>>?>>>>>>>>>><>>>@?>???>????????@??????@?????@???@==;?9=??@@A>@@A@?@@@A@>>@@@7=>=9??@;=86= MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1G NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFAFAFKKKFKFKFKKKKKKKKAAKKF???>>>?>====>======>=========<====>=====>>======>>>>>=>?>>=>=>>=>>=>>>>>>>>>>>>>>>>=>>>=>>>>?>>>>>?>>>>>?>???>???@?>?@????>@??@?@?<8??@@@@@;@@?>=;:> MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1R NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKFKFFA78;>?AAAAAAAAA:A?@A@@?@?@@@@>@@?@@?>@???>>???>>??>??>?@??>?>??>??=??=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>>>>>=>>>=>>>?>=>?>>>=>>>>>==>=========8=>===>>>>;< MC:Z:151M MD:Z:26C80C43 PG:Z:MarkDuplicates.1K NM:i:2 MQ:i:60 OQ:Z:7FKKFKKKKKAFFKF7FKKKKKKFKKKKKFFKKFFKKFKKKFAKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:1102:13656:9115 147 7 4490830 60 151M = 4490646 -335 ATTTTATAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCACCATGACTGAGAATAGTGGTACCCCTGACGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCAT ##############@=?:=>89*-@?:=>183??;??=??>=?>7)<<;??=:'?;=19;>:=>9><1>=>=>=:<>>;9>:5;=6<;;;+>989>=>>=?><>/>====:==3877===<<==:=77===<=>?+?0?= MC:Z:151M MD:Z:6A69C24T49 PG:Z:MarkDuplicates.1Q NM:i:3 MQ:i:60 OQ:Z:##############FFFA>>???>>>>?>>>?<>?>>>>>?>>>>>>>>>>>>>>>>>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>>>??>?@???????<>?@9??@?????@??@???????@??::8@:A@@@@@>;9:> MC:Z:151M MD:Z:23C80C46 PG:Z:MarkDuplicates.1T NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKKKKKKKKKKKKAFKKAKKKFKKKKKKKKKKKKKKKKKKAAFKAKKKKKFKKKFF UQ:i:84 AS:i:141 +HK3T5CCXX160204:6:2219:27032:43571 99 7 4490839 60 151M = 4491059 362 ATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGCGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAACGGGCTGGGCGGCTGACGCCCATTGTTTGGGA <>:???>>>>>>>>>>;>>====;9;>======.>>;<>>:>>792;>41>>>>>;-;<;>>>>>>>)8<>>;-;>*8)<<-<<>>>6>:>(=8.<9<>9>99?>???>>?>>>>>>>>>>>=>>>======>>>>=====>>>>>?>>>>>>>>>>>>>>?>>>>>>>>>>>>=>?>>>>>>?>>>>>?>>>?>>>>9>>>>=?>>>?????>@??@??????????=>:??@??<=@???@@@>@?>:8:8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKAKKFFKKKKKKFFKKKKKKKAFFKFFF< UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2214:9942:25991 163 7 4490842 60 151M = 4491280 587 AAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAAGTGGGCTGGGCGGCTGACCGCCATTGTCTGGGACAG =>=?>??====<====><>==>=<=>>==<>>>==>>=>><;>:>0=>>>=>><<>0<=>>>>>;>3>>2;=:>>>>=?<><>??@>4?>?:..?;./>/:///>9>@+0:=??:9-1?A################### MC:Z:116M2I33M MD:Z:115A18T7T7T0 PG:Z:MarkDuplicates.1P NM:i:4 MQ:i:60 OQ:Z:AAAFFKKFKKKKKKKKFAKFKKKKKKKKKKKKFFKKKKKKAAFAK,FFFKKKKAAK7AFKKKKKFK>@>>@<@@8=>8*>?=1>?????=9??>>>?=??>??>>=>;>>1>>=>>=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>=>>>;=<9>=>>>?>=<8==>==>==>====3=======7===;<1=7=7;>:>=>=<2?>>>@> MC:Z:151M MD:Z:21T129 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:##KKKFKFKKAKF?>>>?>>7>>=>>>>>>>>>>>>?>>>>>>?>:??>>?>>?>?>>:>8?>>>>?=<7?=@??<@?=??:?????@@??@???@==?@A@@@:88?@?>;?->;A?@@8A*<>@@;>=?9<@A@@?<.@?@?@7><>4=?@@@@@?@?>7???@??@@??@??@?@?>??>@????@??<?>>?>>>??>>>>?>>>??>>>>>>>>>??>>?>>>>>?>>?>>>>>>>?>>>>9>?=>9<= MC:Z:128M23S MD:Z:8C80C39 PG:Z:MarkDuplicates.1L NM:i:2 MQ:i:60 OQ:Z:FA,7A,7AAFAAAA<,AKKF7KFAKKKFAA,KKKFF>>>?>?>>>>>>>>>>>?>>===>??>>>?>>?>>?>>>?>??=<>>?>>?>>???>>>>>>>>>?>?>?=>>>>?>>>?>>??>>>?@?@@>?@@@@@?@@?@>@???>?@??:?:>@0;@@@A@@99>@A=>?@@@@@:=:97? MC:Z:22S129M MD:Z:7C80C39 PG:Z:MarkDuplicates.1L NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKFKKKKFKKKKAKKFK,AKKKKKKAFFKKA>=>>>>?>>=>>===;>>==>=>=>=<>>>>>>>>?===;9>>>>>>>>>>9>>>;>>>>>>>>>?>>>>>><;>7>9?>>>?=;>>92<>>>?>=6>????>@??=??>83:@@@@@###### MC:Z:151M MD:Z:147T3 PG:Z:MarkDuplicates.1U NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKKKKAFKKKFKKKKKKKKKKKKKKKFAFKAKAKKKKKFFKKK??>==>>>><=>>>?>>>;8$76<>=?<>?=>??=,<?>;?>>>=>???>>>>=;-:(=<>?:-.;<00<=?=8>>?:>>;.8,)(1,<>=;:>>=,:-.79??=7%9%16:2)%%8?98..31*=@?>??>??>??>=>???????????>???>?=>>?>=>>=?>>>>>>=>9>=>==?>;>?>>>>>?>>?;9>>>>>>>>>>9>=>><=>><=====<=====<======>=?;>?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M NM:i:0 MQ:i:60 OQ:Z:FF>==>>>>>>>>><>>>>>>>>?>>>>=>>;>>>>>>?>>>>>>>;>>;>>>><=>>;>><>>>7>>>:>??????>?:@87=.=)9)):>1&/%3:%82;86:<<@6+6?*/>*8?:;..=@<984 MC:Z:151M MD:Z:2C80C22T22T2T18 PG:Z:MarkDuplicates.1X NM:i:5 MQ:i:60 OQ:Z:AAFAFKAAFFKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKFKFAKKKFFFKKAKFFKKKAFFKKFFKKAKKKKK>;-7=9<8=<=<=><<==<9<=>:==>>?66<9:-&7/277:<>=>5=<>><>>-9>=;4<>,-><>8<&.>:>>>>>==:>>...5::=?,-&;8:&(8;=.3)'5?;&<85<:################################# MC:Z:151M MD:Z:32G63A3A0T6G14T16T9A0 PG:Z:MarkDuplicates.1N NM:i:8 MQ:i:60 OQ:Z:AAAFA,AF?9=>>>>>>>=<-<<4>=<<=<:>8=><<;;=2<8.><><=&<7;'7->=481=;=>=>=?>9<:9;577=>;:0:6<>>>>>=>?>>8>.9>>>::>=>>>>>=>43=?>>)>;??@79@99.4,5*./<@<;##### MC:Z:151M MD:Z:42A32C48T14T11 PG:Z:MarkDuplicates.1N NM:i:4 MQ:i:60 OQ:Z:AA>=?=>>>>===<==<=>==<=<==<==<==<===>=>===>>>>==>>=>=>>>>>>>>?=>>=>>=>>>=<;>?>=>?>>>>>?>>?>>>>>>>>>>>>9>>>?>>??>????????????>???<@?@??@@@?@??@@@?>>::? MC:Z:151M MD:Z:70C80 PG:Z:MarkDuplicates.1K NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFF0<6==.(6>;=:>>>=>0)0/2.0=/>.'/00<62&>;>0/..:=>2/7;50:(&$(35;$1=.*08.<>/=..<..49##################################################### MC:Z:61S90M MD:Z:0A66T1A4A31T5 PG:Z:MarkDuplicates.1P NM:i:5 MQ:i:60 OQ:Z:,<<<=>>>=>>===<=>==<=<==<==<==<=<==============>=<6<>;>>>>>?=>>>>>==9>=>>>?>=>?>>>>>?>>?>>>>>>>>>>>>9>>>>==>>=?9?????????>;=?????>?>9??>?>?@<@?@??>=;;? 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MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:KKF>?>>>?>>>?>>>>9>8;>>??>>?>>>>>?>>?>=>>><>.74<<7>>?>>>>?>>>>>>?:8=??>????6???@=6>=<=???;@????@==?=62@=-;==?@@@@?9)>8):==9@;8*.*9@=############## MC:Z:31S117M3S MD:Z:151 PG:Z:MarkDuplicates.1V NM:i:0 MQ:i:60 OQ:Z:AAAFAKAKKKKKKKKKKKKKKKKK?=6,+67=??=>>?=/<89,(,4=>>>>>>>>>>>>>>>>>>>>:?;>>>>?><>;?<>>>?>>>><>??>?>>?>>>>>>>?>>>>>>>>>>>>>>?>>>>>?>==9>>>>>??>@;=> MC:Z:151M MD:Z:14C136 PG:Z:MarkDuplicates.1I NM:i:1 MQ:i:60 OQ:Z:######A<,A,A<,,KAA@@??@?????@?>>>>8->>=>>>>>>>>>>>>>>>>>>>>?>>>>>?>>>>?>>>>?>>>>>>>?>?>>?>>>>>>>>=====>>>>=====>>>>=>?>>=9>>>>>>>>@ MC:Z:151M MD:Z:12C138 PG:Z:MarkDuplicates.1G NM:i:1 MQ:i:60 OQ:Z:AKKKFKKKKKKKFKKKFFKKKKKFFKKKKKFAKFFKKF<8@>@>@?@@?????@??@????????????:????>?>>=>>>>>=>>>>>=>>>>>>>=>=>>>=>==>>>>>=>>>>>>>>>?>>=>>=>>>>>>>>>>===>=>====<=<=<====<=8==<====<==>=>>>@>8<:= MC:Z:151M MD:Z:5C145 PG:Z:MarkDuplicates.1K NM:i:1 MQ:i:60 OQ:Z:KKKFFFF-@?0*.=;-77<-;.8-;-@>828=>>72:12>8-()>01=7=:?>>?>>>>>=$&;>>>>>>><;>>>=?>>6>>?8>>9;>>>>?>>?>>>>>??>9>?>@8+- MC:Z:151M MD:Z:0A99C50 PG:Z:MarkDuplicates.1F NM:i:2 MQ:i:60 OQ:Z:#FKFA,FA,,,<<,77<,<,7,<,KF<7<=>>?>>=<=>=====>==><===========8)3=>==>>=>>>=>><<=>>==>.=/67=;/=;>=>=5>>=>>=>><>>>>>>?>>>>?>???>?????????>???>??>+8<;=?>===9@@9=8@69?1:995AA5;@@>#### MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKFKFKKKKKKKKKK,>)0/)?@>>:*???:1?:????>???;=????>?????===7:?>>=>=>>>=>=>8>>>>=><;;6/>>>?>=6====>=7>>>>>>>>>>8;;=>>=>;7<====<<8;:<67;;<=:;=;==>=7=>>?>=;= MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1Q NM:i:1 MQ:i:60 OQ:Z:#AA7,,2=?;==>=====>=>>>>=>===>>=9=99>>>==<>=>>>>>>=>>=5=;>>>;>><>=;>>=>==><>>>??>9??40?>>9=??*<<@?@/77@==@?;?9@@4<@=A'A8>>AB0;>>267299<; MC:Z:151M MD:Z:108T23T18 PG:Z:MarkDuplicates.1P NM:i:2 MQ:i:60 OQ:Z:;?>?>?>>>>>?>>?>>>>>>>?>>>>9>>?5>>>?>>>>>>>>>>>>>>>>>>>>>?=>:>>?>>>>@?>?>????8<<>@?@??@??????8@??9??????@??,3>?@@&22;@@=A@.<=>=?>>?>>>>=>==>============8====<<==<=====>>=>>>==>>>>>>=>>=>>=>==>>>>>=>>>>>>>>>?>>>>>=>>>>>>>>>>>>>>>>>:<>>?>?>????>>:??;>>??>?<>>?>?@?;@@0> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>??>>>>>?>>?>>>>>>>?>>>>9>>?>>>>?>>>>>>>>>>=>>>>>>>+=>?8>>=>@>>;;=??9>@>>?????@>@??@??.?>?=@???????:???>?<;.;;>@A@@04;?/?9&(/88<*89@86<)<>=3A?=<### MC:Z:151M MD:Z:126T24 PG:Z:MarkDuplicates.1F NM:i:1 MQ:i:60 OQ:Z:A?@@@A9)@@>>@02>>;?@@::75:4*>8?:)????:<>7=<89=<<=6:?>?>?55:1:>><>>;=>>><><>>3?5>><>=>>>>>>>>>>==8>13>:5;==<===81><=8==<====;=<=<===;=5;77>=:==@?<<.= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:7KFAKAAAA7,FAF<>???>>>>?>>?>>>>>>>>>>872>>=8=>>>>>>>>>>>>>>>(:>>;>?:>>>>?>>>>?><<:=<><=:=>>?>>>>7=>?;>>?>:-6?=??@?=67?=??7>>?@<@>??@;0%6>@27/9.<:<### MC:Z:151M MD:Z:50T53T43C2 PG:Z:MarkDuplicates.1T NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKAAAKK==@@A@@8@@8=&9((>>8%5@>9@>?<>=:@???;=??????@?:???>=-??>=8?>>?>><<>>>>>>=49=>>>>>><>?<9>;6>3<-9>>=>:=>==>><=>8>>>?><>=9=9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G NM:i:0 MQ:i:60 OQ:Z:##AAK<:>80:0>1@@?@967.???=29??>?????78;??767<><=?<>=>??>=><>>>>2*)>><799,><;>>8=<=>>>>>>>>>8>=<>>70&>;<1==<;;=7(,&)(96=;=<:2));:>&<3'7);=')'<,9 MC:Z:151M MD:Z:127G8G5T3G4 PG:Z:MarkDuplicates.1Q NM:i:4 MQ:i:60 OQ:Z:>?>>?==>=========8====<<==<>=>>=>>====<<>>>>>>=>>>>>=>==>>>>>=>>>>>>>>>?>>>>>=>>>>>>>>>>>>>>>>>/<==>>?>?????=:????>??>?:.:?>?@>:???@@A>@A@@=>=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O NM:i:0 MQ:i:60 OQ:Z:AA?>?@?>>?>>?>>>>>>>?><>=8==>>>>*;;><====>>>>>>>>=>?>>>>>?=>>=?>>>>?>>>><>??>=>>?>>>8=>>?>>???;>=;?-85>9>799<9<=<399=;<@>=>>>8'/9=AA?6=### MC:Z:102S49M MD:Z:35A113C1 PG:Z:MarkDuplicates.1C NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKFKKK7AAKFKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKFKFKKFKKKKKK7FKKKFKKKKAFFFK,A???A@8/.?:?>;?A>>>9@@?@9.??=?@@=?>>@???=>===?=?>?><5==?>?:>>>>><>><<<)91?8;>>:=>>;>>>=>>>9<7>>;;=>>=><<7=>>>=>7>>=>=>=<>==<===>=8>=<==>==>>=?>?=;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N NM:i:0 MQ:i:60 OQ:Z:#A7?@==>=====>====<<7====<<==<===>><>>=;>=:;<>>>;9=>>>>=><=;>>>>=>>>>>>>>>?>>>>>=>>>>>>>>;>???=??5=;9=>>?><6=?>?>??>?7?>@?@A?;@6:??@@@B<>=@@>;88= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKFKKKKAFFKKKFKKKKKKKKKKAKKFAKKFFAKKKAAFKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKFKK7FA??@>>>>>>>?>>>>9>=>====?>=>>=>>>>>>>=><>8>>>>><>>>>>>>>>>>>==<>>>>>>??>>>>>>>>>>>>?>>>>>>>>>>>>>>??????????9>>???99=?;?=??@@?:????=>>?=@@@@@@@?><:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAK>?>>>>?>>>>9>>?>>>>?>>=>>>>>>>>>=>>>>>>>>?:=>>>?><7??>>==?>????<<=???8:9>@=.;*8>1<'15:--:1<82/;:9?@7(58;=?8@?################## MC:Z:151M MD:Z:138T8T3 PG:Z:MarkDuplicates.1L NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKAFKKKKKF7KKKKFFKKFKKFKAKKKKKKKKKKKKKFKKKKAAAKKK7AAFKA,A,7F7<,<:=0?@?<>@@@@9????:'8?>>>=?=???==9??>>>????>>>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>=======9>===>=>====<===>=8========>=====<>>>>>???>=? MC:Z:151M MD:Z:20A130 PG:Z:MarkDuplicates.1R NM:i:1 MQ:i:60 OQ:Z:KAF<,AKFAAKKKKFKKKFA( VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.10 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.11 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.12 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.13 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.14 VN:6bdf8d4fcdfd4e24b1bbb8ff20c87271864128b8 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HM3G2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HM3G2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.15 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTL2KCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTL2KCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.16 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTL2KCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTL2KCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.17 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.V +@PG ID:MarkDuplicates.18 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.U +@PG ID:MarkDuplicates.19 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.X +@PG ID:MarkDuplicates.1A VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.W +@PG ID:MarkDuplicates.1B VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.R +@PG ID:MarkDuplicates.1C VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Q +@PG ID:MarkDuplicates.1D VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.T +@PG ID:MarkDuplicates.1E VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.S +@PG ID:MarkDuplicates.1F VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.N +@PG ID:MarkDuplicates.1G VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.M +@PG ID:MarkDuplicates.1H VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.P +@PG ID:MarkDuplicates.1I VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.O +@PG ID:MarkDuplicates.1J VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.J +@PG ID:MarkDuplicates.1K VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.I +@PG ID:MarkDuplicates.1L VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.L +@PG ID:MarkDuplicates.1M VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.K +@PG ID:MarkDuplicates.1N VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.H +@PG ID:MarkDuplicates.1O VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates +@PG ID:MarkDuplicates.1P VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.16 +@PG ID:MarkDuplicates.1Q VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.14 +@PG ID:MarkDuplicates.1R VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.15 +@PG ID:MarkDuplicates.1S VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Z +@PG ID:MarkDuplicates.1T VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.12 +@PG ID:MarkDuplicates.1U VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.13 +@PG ID:MarkDuplicates.1V VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Y +@PG ID:MarkDuplicates.1W VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.10 +@PG ID:MarkDuplicates.1X VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.11 +@PG ID:MarkDuplicates.H VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.I VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.J VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.K VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.L VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYN2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HJYN2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.M VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.N VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.O VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.P VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.7 +@PG ID:MarkDuplicates.Q VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.8 +@PG ID:MarkDuplicates.R VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.S VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.9 +@PG ID:MarkDuplicates.T VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.U VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.A +@PG ID:MarkDuplicates.V VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.W VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.X VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.Y VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.D +@PG ID:MarkDuplicates.Z VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.E +@PG ID:bwamem VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.1 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.2 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.3 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.4 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.5 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.6 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.7 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.8 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.9 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.A VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.B VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.C VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.D VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 8 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.E VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.F VN:0.7.7-r441 CL:/seq/software/picard/1.1062/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@CO aggregation_version=5 +HM3G2CCXX160308:2:2121:20618:61116 99 1 14804625 60 151M = 14804863 389 CTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA >A>>??>=>?>==<===<===<<===<=====<===>==<<==<>==>>>>>>===>=>>>=>>>=>?>===>=>>>>=>==>?>=>>>==>>=>?>=>>>=>>>=>>>=???==??>???>>???>???>???>?????@@>@@?==;;> MC:Z:151M MD:Z:145A5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKFFKKKFFKAKFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKFKKKKKKKKKKKKKKKKFFFKKKKKKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2121:20791:59868 1123 1 14804625 60 151M = 14804863 389 CTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGAGGAGAGATGGATAGATAGATGGCTGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA ;A;>4:>=>?>==<=><<;==<<;:+3:<==71;;>>=-7:=5:=7=,,,(45<49+6.5===(4*7(;9/--'27:*05<4*(<:8;<::8+*.1<**<<:78<=>,>:2>>>?35;?:=?=;=?;),-4;5;>;5-**5;'+?>><;<9 MC:Z:151M MD:Z:50T12G9A71A5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z://A?@67?*@@7@??9./**=..2=>);:==?.1;6.810(<47.1(8.00>;?<>.%(;<6<=>5<<==8>2>=>><=>:=(>>0==:2=>><=:>><>>><=79><<=789=38<=<3=;<<><'7:?4:- MC:Z:151M MD:Z:0C5T29A114 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:3 MQ:i:60 OQ:Z:#########A7A,<,,FFF<??>>?>=>====<===<<===<=====<===>>==<>===7<<>>;>>=>-<=2<>'=<<.9=><9<>=>>>=07=;==>=;>>=>>==>?>=>>>>8>>8>>>;???>&4:=???<=>??????>???@>???@@@@@@@@18<:<< MC:Z:59S92M MD:Z:59A52A30A1A5 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFK7>6??>?????>???@??>=??>?>>6>>=>>===>=>>>=>>>==<>=>><=>>>>=>>=><>=>>>=>>>=>;>=>=;=>>>==>;<>=>====<====<===<==86===<==;<===<===>>>>=>?=>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A=>?>>>>>>>>>==>>=====>>>=>>====?>>>>>>>><===>=>>>>>>>>>>>>>>>>>>>;>><;><>?>>>>>>>>>=>?>=>>>>>>>=>??????=>>???7?=?????=???=8=?>./:=??:=<2=;/6:#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKFKKKKKKKKKKKKFKKFFKAFKKKKKKKKKKFKKKFKKKKKKKFKKKKKKKFKKKKK7AKFFFKKKKKAFKKA7FKF,7AAFKAF<7F<,?;>>>>(:>=<====<====1=;=='63:6<=<*:.=<9.=*0:0:2.=<==>>=.=>=>>2=.79>.=<<88>:/:<088<>.>>9/:20/:=>>>>06;<<>?=>;/8>=/?:*0370??=>>?;>=?################## MC:Z:45S106M MD:Z:28A89A15^AAGA17 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:6 MQ:i:60 OQ:Z:AFFFAKKKK,>9?<@2=>.1A*@@@=?<>558?:?94=>?;.*957:8>===:;)<>???>=7==;8>=;<>>=>>=>?>=>>>=<)7=>?=9:>7=>>7=>=3=>=;=>>><>>>><>>;<===<==5<===<==8<8=<<===<==8>?@8<= MC:Z:151M MD:Z:137A13 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:@>>=?>==>>><=====<===>==<<==<=<====<==<=<=<=>==>>>=>?>=>>>=>>>><>><=?>=>>>=>?>=>>>=>>>=>>>=>>>==>>=>=>>=>??>?>?>???>???>???>???>???>?@@=;## MC:Z:151M MD:Z:131A19 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKFKKKKKKKKKKKKKKKKKKKFKKFFKKF,>=?>?>>>>?>>>>>>>>>???>>>?>>?>>>>>>>><9=?>>>>>>>>>>>?>>>>>>>>>=>>>>??>7=>->=:<>??8<=><;?>>>?>>;=<<>@*<>>?@??=?<>@8;;@<.?@=?)((.?;?@@>@@@;>>/89#### MC:Z:151M MD:Z:124A5A17T2 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAFKKKKKFKKKKKFKKKKKFKKKKFKKKKKKK7FK,FFFAFKK7AFKAAKKKFKKFAFFAFK7AFFKKKKFKAFKA<?======<)1<>==<<==<=<=======<>;>=>;4<>>>=<>>=9<>>><>>=>?>=-5=;.;:;=<><>>>=>>>1>>>7=:?>???>??1<:???>???>>??;>?<>9@;>8@?<9=@9@@@?=@@5:A@@97?=9;;> MC:Z:151M MD:Z:13C111A25 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKK,>???>==<===>==<<>=<><==>>===>>=>=>>>=>>>=>?>=>>>=>>>>>>>=>?>=>>>=>>>=>?>>>??>???>???????>???>????>>??>@??>???>+A?@=1;>A06>;76> MC:Z:151M MD:Z:112A9A17T10 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKFFFKAFKKFKKKKKKK,AFF;??>:=;=====<:====;<=<<7*)01<6:==<%<:*<2=:<=:)072<<;=<;;;><=>>9;=<=>?=<<:====*6<=<<289<=>><>8/6=>>>0;>>=/*5><>:?=*:0*;<=9<>>??;>@??@??<<0++>=@?<=-;# MC:Z:22S129M MD:Z:37A48A32A31 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAF)-.*:=8997.=>-6::?=?=6.?=9<@?>?89<@>??@??>????@<=>???=>?8=:?>>>?>>>?>>>?>>;?>>>?>>>?>>>?>>>?<>:>>>>>>>>?>???==< MC:Z:151M MD:Z:12C9T128 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:####################A7,FA<=?>>==<:=;<=<====<==<=<=<===<=>><=?>=>>>=>>>><>>9=?>=>>>=>>>;=>>>=;=>=<>>=>>>9>>><41<=>???>??=3:>?>>>?>???>???3>?@>???;<>@9/<-;1<<:9@@=##### MC:Z:151M MD:Z:116A13A20 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKFFAKKKKKKKAKKKKKKFKKKKKKKFFKKKKKKKKKKKFKKAFKKKKKKKKKKFAKKKKKKKFFFFFKKKKKKAKKKF<7FFKKKKKKKF7AFKKFFFKKKKFKKK7FFFKKKKAAAK<,<,<,<<<7==>?>>>=>===<==<=<=<===<><====>=>>><>>>><<<=>?>>>>>=4<=>=?>=>>>=>>>=>>>=>>>=>>>=>>>>=>>>=>>>=>>>=>>?>???>???>???>???>???>???>:;:>7;:????@<9-=:;? MC:Z:151M MD:Z:114A36 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKFKKKKKKKKKKKKFKKFFKKKKKKKKKKFFFKKKKFFKKK7FFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKF6%96)>=7:;)(7-19+7>=6-19+:=8+-9><>>;:<9,+?<>>89:?<=:>8>:>>>=?>>:==>=:?>>:?>>>?>>>?>>>?=>>8=9>?>==?===>===>=======>>>>?>>>>>@??<8+9A?@@>@=8:?@8@2=*1=?1>>>8?>>)=>?)9<70<==8?=>?<>=9?<:&=1>=7=>=8=>><:>>>=><)9;>>>9>>;=>>>=>>>=>>>=>>;=>>=>>>>====<==7<<#;2&==<====<==<=>=??====/?=:/-0<99=4/.<>?<<>??@@;;<=???<>>@=??@??==:?>>>?>>=?>>>?>>>?>>>?;>>?>>>?>>>?>>>?>>>>>>>>>>>?>>>?>?>=?>>=;= MC:Z:151M MD:Z:0T10T139 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:############A<?>>=>=>>=====<=<=<===<===<=>=<===<======>==?>=>>>=>>>:=?>=>>=<>=>=>>><>=>=>>>=>>>>=>=>=>>>=>>>=>>>=>>>==>==???=??>==>>>?????=??>?>98(/7@@>>>;;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKFFKFKKKKKFKAFKKKKKKKKKKKFKFKKKKKKKKKKKKKKKFFKKFKKKFKKFFFFFKKKKKAFAFFAFKFFA<7,,AFFAFAFK< UQ:i:0 AS:i:151 +HK35NCCXX160204:2:2209:29579:59235 147 1 14804663 60 151M = 14804553 -261 GGCTGAGATGGGTGGGGAGGTGGATGGATAGATGGATGGGTGGATAGATGGATGGGTAGAAGGGAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATA ############################################################=(8'=1=+-<=+>8(,-<2++>;6+-<=:>>>9?1>:>(9+-('5?>>>?8=:-(5>;418?>>>>>>>><>==>>>?>?>>>>??=>.=< MC:Z:151M MD:Z:1A13A3A35A7A43A43 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:6 MQ:i:60 OQ:Z:############################################################A,A,A7F,,FF,FA,,,F7,,F@>??>>>=>=><===<===<=>=<===<=======<=>=<====>=>=>?>=>>>=>>>=>>>=>>>=>>>=>>>>=>>>=>>>=>>>=>>>:>>>=>>=>>>>=>>>=???>????=>?>>???>??>?=?=???>@@@??A@>>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKFFKKFFKKKKKKFFFFKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2106:16315:24515 163 1 14804672 60 151M = 14804871 350 GGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGG =;<>>>====:>==<===<=>=<====>==>>=>=>?>=>>>;>>><->;=>>><=;>=>>><>>>=>>>=><>>=>>>=>>>=>??>?;?>>??;>??>>?<??=9/9<@.:>>?@@9.-/--**A/:=:/-;??@5><:: MC:Z:151M MD:Z:98A52 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF,FFKKKKFAFKKKKKFKKKKKKKKKAKKKKKKKKKKKKKKKKFKKFKK?;?>?=>>>=>==<=>=<===<=======<=>=<===<===<=?><>>>=>>>=>>>=>>>=>>>=>>>>=>=>=>><<>>>=>>>=>>>=>>=>>>>=>>>=>>>=>><>8>?>=>5<=>=>?@?@???>???>?>>?@@=?@@?<8?<><===<=>=<===<=======<=>=<==>;>>>=>?>=>>><<>==<>>=>>>=>>>=><>>=>>>=>><=>>>=>>>=>>><:>>>??=:???6=?>=??>?/-)4.==?>?><.(.(/--9@>@?82<5=?@==@@?@><9:= MC:Z:151M MD:Z:91A59 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFFKFKFKKKKKKKKKKKKFKKKKKKKKKAFKKKKKKKKKKKFFKKKKKFAKKK=>??>>>>==<<==7;59======<=;=<===<===<=>=<==5<==>:<4=)2;==>><=6<<>=>>53<==:=>>=699<>>5=<>=>>2<=>><=:><:=>>>=>>=/-<>>?=>???>?=?>3?-*<569==??>>>>=>?=<===<=======<=>=<===<===<=>=<==><=<>=>>><>>;=>>>=<>>>=>>>=>>>=>>>=>>>=>>>=>>==>>>=>>>=>>>=>>>>>>>>??5<>??>?@?@???>???>);?>????@@@>@@?==;## MC:Z:151M MD:Z:131T19 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AA>>><;?7;5=>>>>>>>?>>;?==>>>>>==>>??>>?>==>==>?>=>>>>>????=;< MC:Z:151M MD:Z:6T7T2A4T6A15A31A68 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:7 MQ:i:60 OQ:Z:###################################AAF7A7<,AAAA<7A,FAA,7,,,,,AA,?=>?>>>7>>?>>>>>>>>>>??=??>>>?>>>??>>??>>?>?=>??8>>=>>?9>>:5=><=>>??=>>>>>>?>>.==>??>>9?>>698(.=8><9<,69=?6>>:6,==::>.?@5=.65.7:>@<78<.??9-;>8/<8## MC:Z:151M MD:Z:72A76T1 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFFKKAFFKFFKKKKKKKKKKFKKKFFKKKAKKFKKKKKKKKKFKFKKKAFFFKKKAKF<<=>>?>>>??>>>>>>>>>>??>>?==>?>>>?>>>?>>>?>>>>>?>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>=>>><>???@???>?@?????????@@??@???@???@???A@@@A@?@A@@@?@@?>;:8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKFKKKKKFFKKKFAKF UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1204:6066:67340 147 1 14804699 60 33S118M = 14804209 -608 GGAGAGGGGTGGGGGGAGGGATGGGTAGGTGGGTGGGTGGGTAGATGGATGGATAGGAGGAAGGAAGGAAGGAAGGAAAAGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAA #######################################################81>95.089.0(99<81.092;6.:8/$3=<&>=6<<=.>>=;<>=>>>=;>>=;>><-0>=>>>><===:8======<;=;====;<=><=>=<= MC:Z:151M MD:Z:7A15A25A3A17A46 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:5 MQ:i:60 OQ:Z:#######################################################A7AA<,,AA,,,A<1.<4:/1=1.0+9-/10.<<<:/8=.<8=:><><><>>>8>;0<>=>>>====>>>?>>>>>=>>>>>===>>>>>>??<<<; MC:Z:151M MD:Z:7T11T50A58 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:3 MQ:i:60 OQ:Z:##################################################A<,7A<<7A<,177>760=8=/>;>>?>=:>>=9><8=;>=>><<<<;9.<7:=>>=>>;>=<>=>?>;>>>=>>>=>?>=>>>====<===<===<==<====<==<=====?>?=:= MC:Z:151M MD:Z:1T11T3T133 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:###############################A,77A/<=====<=>=7:==<8;5<0;;797;<<:>9>>&2=>>=9>>>5>>>8<<>=>>>=>>=;<;:<>>>0<>>4=>,<.57):=;>2;4*.(70==?=.-9>7@?>3?,*):,)),,*1@?<3;=<#################### MC:Z:151M MD:Z:40A33A76 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AA,>=>>><=?=<>==<===<=======>===>====<==>=>>>=>>>=>>>=>>>=>>=>>>>=>>>=>>>=>>>>/>=>>>>>=>>=>?>?>>>=>>>=>>?>?<>????>???>???>??>@>@;@?@@<@@@@@?@0?6;6> MC:Z:2S149M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:<<=<===<===;===;<;<<====>>>;<<>>=>>=<>>><>>><>>>=<9><>><9>>>=;<53>=<504<<.:;<39;==8/;/,>><<<>=7=:;??>???>???>???>9?9<>@;+/>55=>04:8;8 MC:Z:151M MD:Z:62A88 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFA,FKKF,AAKKKKKKKKKKFKKFFFAFKKKKKKKKAFFKKKKKFFKKKFKKKFKKKKFAKFKKFAKKKKFF77KFA7,7AF,AAA7AAKFA,F,,FKAAAKAAAAAKKFKKKKKKKFFKKK725=6:,@=:,>9><8=>4@<=;?894?=????=>>?<=<>=8>>4>>>>>>>>>??>>?>>>?>>>?>>>?<>>?>>>?>>>>>>>>?>>>>>>:>>>?>??=<=< MC:Z:151M MD:Z:2T3T6A24A18A93 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:5 MQ:i:60 OQ:Z:#######################################A<<,A<77<><>?>.8=7><8=<;=8=>9=9=>?><>?<>>?<>=?>=-(4>>?:6>9/<>=8>>?>=-5>>6907>>>>>?=<<,<,>>>=>>>.<>??>?>?=@???@?.-=8->@=<:>?:;?:8??A@@'<;@@?########## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:?>>>?>=>>>====<===<====<===7<==<===<===<====>=<<>>>=>>>=>>>=>>>>>>=<7>>>=>>=>?>?>>>=>>>=>?>=>>>=>>>=>>>=>>>=>?>????>??>>?????>??@>?>??>??@?@@>@@?=;0>===>>>>>=>>===>>>==>=>=>==>>>>>>>>>===>9>>>>>>>>>>>>>>>>>>>>>>>:=<>>>>>>=?=?>>>>>>>>>>>>>>>>>>>????????????>????;??????;????@8????=?@@@@@>>.:??>3<9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKK>>??>=<===<===<=>=======>==<>>>=>>>=>>>=>>=>>>>=>>>=>>=<>>>>7><0.:=>>>=9.9/.<>=>.>=0.;????????>????>???>??0@:@??@@?/?:>?@@;@/07'2>AA@@A@A############ MC:Z:151M MD:Z:149T1 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAFKKK7FF,,AFKFKF7,7,,AFFK,FF,,@>?@@?299A1:<@:)??=>???>??=>???>???>???>??;/;>;=<%)>:=>=>?>?>::9>>;9>;<<,>7=<>69;179=<0,>=9/=<&4+;0.;==<;<==:<<8<15=<5)9=)=7<2;/3?=?:>= MC:Z:151M MD:Z:43A21T22A14G6G1A38 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:FAA7>:97:8<5@;>;;98;;>):6>8,;=9>;=)=:?9=5@58688?@<9>>>?>;<>>>?>>>>>>>?<>>>>>>?>>>>>>>>>>>>?>>>>>?>>>>?>>>=>>>8>>>=>>=>?>>;>=:< MC:Z:151M MD:Z:99G51 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:#########A<>@?<<<>5-:2?>>8(&;;<5@<<>=(>>?<<5?<9>?<>8>>>>;<:=<=;>>><=>=<>?>>=9=>>8>7>>>>>>?>?>>=;< MC:Z:151M MD:Z:0A13A6A4A2A10A0A0A2A7A27A69 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:11 MQ:i:60 OQ:Z:###############################################################KKKKKFAAF7,<7KFFA,,A8?9>7?4(7?=>??=>???>>?>=>>>=>>><:=>=>><7=>>=>?><>>>=>>>=>?>=>>;==>>=>>3=>>>=>==>>>>=:=<====<=<==>=====<===<==<>=====<>?>>>@?=:?> MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:#######A77,7A?@96/.)6=?=??=???@?>?????>@@??@?>>>?>>>?>>>?>>;?82>;=>8;?>>>>>?>=>>?>>>>>>?>>;>>>>>??>>?@@<:=< MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:############################A,<7FAA,,:;3;.63,.=>::?>?@=:+?9>9????@??><<=+;<=5>?>>>>>>>>>>?>>>?>?>>>>>>>=>>?=>?;=:?>>><>>:?>>>=>>>?>>>>>:<;=>>>>>?=<:>?>==>>>?>>>=>>>>??>>???>>>?>?>;? 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MC:Z:151M MD:Z:36A114 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFKKKKKKKKFKKKKKKFKFKKKKKKKKKKKAKKKKKKKKKKKFKKKFFKKKKKFFKFAAFKKKKKKKKKKKKFFFKKKKFAAA->=>7><7+>=>=>>>=>>=><>>=>:=>2>>=>=>>?>>>>>=>>>=>=<>>=<==:=>=>=>====><>>?=?>>= MC:Z:151M MD:Z:10A11A0A3A1A1A3A2A4A6A100 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:10 MQ:i:60 OQ:Z:################################################A<,FKFA,AA,,7,F,KKF7KF7,FKA,AKAFFKA2>0(2@@>=8A9(?@'2@0)'.>6;?=((><':;.('><971>89;,0869'%>;=?>:>;>=::>;>9><;23>43=;8=>>:=<<;<:7>7;8<=9==7=<==>=:===<==+;==<===<==<=>=<=>===>><>>?=?>@> MC:Z:151M MD:Z:29A121 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:#FAA<7<,,7AFFA7AA,A<,7A,,,,F020*02)*0<9=0>4:027=8><<8*>=>67>=><:/(='>(;==>>=>8><>>>=>>9===*=>>>=>>=>>>><>>=>>>>=>=>=?>=<==<=6=<==<===<==<=>=<=>==<==<=>>=>>>???<=> MC:Z:151M MD:Z:5A1G16A17T108 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:########F,7AA,AAF,,7,,,,,,7AF,<92=>=9:0=:<;8=.><=>>>>=>>=>:;.><>=>>>=>7==>>>=>>>=>>>=>>>=>>=>>>>=>>=>>>>=>=>>?>====<===<==<===<==<=>=<=>==<==<===<===>>>>>??>>? MC:Z:151M MD:Z:10A9A130 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:###################AA@8;:=97==?;+>:???==<<,:9>@;??>:??@?>>?<>?@>>>?>>>>>>>>>..<>>;<>>>?>>>>>>?>>>>>>>>>?>>>??>>>>>>>>>==>>>?>>??==<< MC:Z:151M MD:Z:5A4G8A131 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:#######################################FF7AAF7=?>?>>>?<>>?>><0<>=?/77>1>>66'8==/8>?>>(-,=,(08,8'<,>,:,5'-('&:-(':8(,,>=-<;@??:8=/=?1,7?887988@@=>.=>6################################## MC:Z:7S144M MD:Z:4A13A29T13G1A3A9G48G17T5 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:9 MQ:i:60 OQ:Z:AAF,,FFFFKKKKKFKKKKFA7FFFK77AKK7F7KK7A(7FF7AFKKK,,,F,,77,A,A,F,A,<,,,,(<,,,77,,,FF,A>??980>*>???>???>>>8<8/8*2*?>=>>=:?><><>=>>>=:42==1>=>>>=>>>=>>>===<<>=>=>>=>>>>=>=>>?>>>>><=>=<==<===<==<=>=<=>==<==<===<====>>>=>????<=> MC:Z:151M MD:Z:17A2G14T3T111 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:?>=8:==;;5>>7=(?9<=???>??>==>>=>>>=>><9>>;=<==>=>>=>>9>;>>=>=>>?>>>>>=>>>=>>==>>=>=<=>=<=>=#<==<===<=======<=????;<= MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#####AA<7A77<,,<<,F7(.070.0(8.-<930'<'.<7/1>;,=<>4.><6-<<<<>61;-+=;;6-<><78/;->><9/7=====>==<>=<>=><<>;=>>:=7< SA:Z:9,28189608,-,17S8M1I29M1I34M61S,1,5; MC:Z:151M MD:Z:14A4A4A18A48 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:########################################################A7,AA,,,A7,,,A,,FA7,,F,,FA,7KF,AFKA,KF7,FFFAKA>>>=>=<>===<===7>======>>=>7>>>>>>>=>?>?>>>=>>>=>?>>>>>=>>>>>>>;8>>;<<<>><>>>>==??>??>?8,6>:??>???>??????>?>>?=@;@<=:><<@@@@??/9?=5=@??>>/>?/<6=)078< MC:Z:151M MD:Z:146T4 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFAFFKKKKKKKKK7FKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKAAKKAAFAKKFKFKKKKKKKKKKK7,AFFKKKKKKKFKFFKKKFAFAAAAA=>?>?>>=>>><===<===<=======<====<==<=>=>====>=>=>?>=>>>=>>>=>>>=>>>=>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=?@?>?@??=?>>>??>???????>?@??=-@?>=;:< MC:Z:151M MD:Z:7A143 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKFKKKKKKKKFKKKKKK<,AFFAKKKKKKF UQ:i:42 AS:i:146 +HK35MCCXX160204:8:2122:1479:33973 83 1 14804764 60 17S134M = 14804569 -329 GAAGAAAGAGAGGAAGGAGGAAGAAAAGAAGGAAGGAAGGGTGGGTGGGAGGAAATATGGATGGATAGAAGGAAGGAAGGAAAGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGAT #############################################<&87.8.++6+9;>=:64<87>8+?>>;?:=+.);+<.==>(===7=::8+8>?>=9>>?9<5>>:=7:9>=99>4=>>>>??>>>>>>>>>>>>>??=<>> MC:Z:114M37S MD:Z:9G17A8T28G68 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:4 MQ:i:60 OQ:Z:#############################################A(AA,A7,,7,A?,/)?7:)-.>7>,>><@9>-@=;?@???@?=?@?>>?????>@?>8;>>8(>>?>>>>>>?>>>>>>><=>>>=??>>>>>><>>>>===>>>>>>><>>>>?<;>>>>>8=<>< MC:Z:151M MD:Z:3A12A18T115 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:#################F<9>??@>>>?>>>?>>>?>>>>>>>>>>>?>>>?>?=>>>>>>>>??>>?>>>?>>>?>>>?>=>?>>>?>>>>>>>>?>>>>>?>>>>?>>>>>>?>???>>;>?@>?@@@?=????>?????9;>==?@???@<@@A>@;7:@?78<08 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:A>>>>=>=>>>=>>=====<:======<=?=>;>>=>>1==>>>=>>>=>>>=>><<<>=-76<;>>=6>>>>>=>>?>>>>>=>>>=>>->>5;88==?=??>?>=?????????7,==,)=?@@6;,==??>>>>=>>=<=======<====<==<=>=>===<===<=>>==>>=>=>=>>>=>>>=>>=>>=>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>?=??><>?>???????>?@????>???>9?@;<88@=>;;? MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKFFFKKKFKKKFKKKAFKKKKKKKKFKKKKKKKKKKFA7AK>>?>>>>>>>>>>>?>==>=>>>>>>=>>>??>=>==>?>>>?<>>?>>>?>>>>>>=>>>>>?65>>>?6>6>=><=<>>?>>96>><=@@??=>@???08<=8>??7?<>=?.?>>>?>=>>>>========<==<=>=>===<===<=>=<===<>>==>>=>>>>=>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>??>???????>?@??>=>????????>>;@?@=@@?>=:;? MC:Z:151M MD:Z:50G100 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAAKKKKKKKKKKKKKKFFKKKKKFKK UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:2220:16417:29226 99 1 14804777 60 151M = 14804877 251 GGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGG ?<>???=>>>>===<====<==<=>=>===<===<=>><>==<>>=<===<>>>=>>=>>>>=>>=>>>><>=>>?>>>>>=>>>=>>=>>>=>>>>?>>>?>>:>>>???>???????>?@????>????????>?;@?@A@@>@>;;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFAFKKKKK UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:1224:26311:55227 99 1 14804780 60 151M = 14804984 355 AGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAG =>=???>>>>>===>=<==<=>=>===<===<=>><>>=====<====>>>>>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>>>>=>?>=>?>>>>>=>>?>?????>>>?@>???>????????>>:?>@@@@>@>@@><9:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKK.>=>8<6>+?>>?>>>?8<=?>>>?>>>?>>>?>>>>=<>=?>>>>>?>9=>>======>========>?>=>??=>?=>>?? MC:Z:151M MD:Z:107 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:#############################################################A?>>>==>>====<==<=>>>==>==>==>?>=>>>=>>>=>>>=>>>=>>=>>>>=>>==>>>8>=>>?=>==>=>>>=??=???>?>9>@?:>@?????>??>>??@?>?8?@.::?@@@>:<@A==7;8? MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAKKKKKKKKFKKKKKKKKKKKKKKFAFKKFAKKKKKKKKKFKFKFKAFAA<7AF,<7AKKK<7AAKAAF(7A7,,=@7@6?@>>??<>???>??:=?>>=>>>=>=;<>><=>>>=<4=>>>>=>=>>?>>>5>=>>>=>>=>>>=>>=>?=<=;>=<==<>==<=======<=>====<====<===<=8=<====<>>=>>>?>?:@> MC:Z:151M MD:Z:6T144 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:##AA<<,KAF,AAKKFFF7F7KAFKKAFKAFKKKFFFFKKKKKKKKFFFKKFAKKKKF7KKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:11 AS:i:146 +HM3G2CCXX160308:2:2203:13088:33691 99 1 14804784 60 151M = 14805169 536 AGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGCTGGGTGGATGGCAGTTTT >?>?>?>=>>>>===<=>=>===3===<=>=<===<===<===<>>=<>><>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>>=>>>=:=6::>?>>@):??>????>>??;<:?:??=??-;<?>>?>>>?>?>=>><>>>>39>>=>7<5;>>=>>:?>>=?>>>?>><>>>>>?>>>>>?>>???????;:=??????-=?@>=<@@<-9@<))-<:8@=%2>??;9>3:9### MC:Z:151M MD:Z:144T6 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:A?>>===<===<=>=<===<===<===<===<==<====<=>==>>><>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>>>=>>>>>>>>>?>>>>>?>??<>9?>????9??>????@@@<@@@@?=?;;=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKFKKFFKKKKFKKAAKKKKFKKKKKK7FKAFKKKFKK<@;??>@@;??=>@??>???>??;<91=>?<>=;??;9<>=7<>:>>=>>>=>>==>>=>>;>;>9>?>>=;>=>>>=>><>>>>=>?>=>;=<=>>=>>=<=8=<====<==<======<=====<>?>?<;= MC:Z:151M MD:Z:9T141 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FFFF?>>?@>?>>>====<=>=<===<===<<==<===<==<====<>><=>>><>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>><>>><=>>>>>>:>?>>>>=>>??????>>:?:>>?????;??????>?@@@@?>@?21;8;; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKFKAKKKKKKKKKKKKKKKKKKKAFFKKKKKAFKKKKKAAFKKKKKKK,,<=>=?@>>>=>>=<=>=<===<===<===<===<==<====<=====>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>>>=>>>>>>>=>?>>>>=>>>>????>>:?>??>>>??>??????>????@??@>@@?==::? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKFFKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1219:25317:10433 99 1 14804800 60 151M = 14804836 187 TATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCA >;>=??>=>>>==>=<===<===<===<===<==<====<==<<>>=>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>>=>>>=>>>>>>>=>?>>>>=>>>>>>??>>:?>?>??;>?>????????????>?@?@?@??=<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK?@>@@?:>4@@??@;@??>????????>>??>>>?>>>>>>>?>>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>???;;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:###FAF??=<===<===<===<===<==<====):==:>>>>=<>>?=>=>>=>>>=>>=>>>=>><>?>==4:<<>=<>>>==>><>>>=>??><8=>???,095>7>?>=<=>@9=;*5;8@1.:655+<>=@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKK,%$3>6(9,6%$+75&#<-:'((/<(;,9>=>9############################################################################################## MC:Z:151M MD:Z:8A8G12G0A4A2T4A1A11A0T5T1T2A7G17 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:14 MQ:i:60 OQ:Z:AAF<,,,F,,=?>>9=>=>>>>>>;>>><>>=>>>=====>>>>>>>>>>?>=>=<>>>8>>>>>>>>><9??>>?6>>>>>=>:<;>>>=.=>><>>>>=>>>><,>><,:=?';&??2>)>96=8.:+))/.8:= MC:Z:4S147M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:<@<>>?>>=>>><===<===<==<====<=<<<=====<2=><==>==>>>=>>=>>>=>>==?>=>?>>>=>=>>==>>>>><>=>?<>>;==>>>=>>>==8<=>>>-=<<=?>????0;/>==8;?>@@??.?*9=:;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKFKKK7FKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKAKKKKKKAKKKKFKKAKFKKKAFFKKKFFKKKF,FAAFKFKKKK,<,AAAA@?@A@?@@>=9@6>@);/-??6);0>(<-?=>>??>>>)7'><5)>>=>>=>2>=>>><>>>=<>;=>>=>=<)>=<9>=>1>>=>>=>>>>>><9====<;=====<=<=========<=>>??;<= MC:Z:151M MD:Z:27T36T86 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:#A,A<7,<9;12>?=@????=>>:;<6>?>?>??@=9/<>:<9?>>>=>>>=-7==>?>>=8>=>>>=>>>>>>>=><>>:;<=8>>=>>>=<9>=>>>>=>>=>>>=>><=====<==<===<=<===<==<==<==<====>>>>>>?>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<7FA,,FFFAFAAKFKAAA<7AKKKKKKKF<,AFAAAKKFFKKFKF,7KAKKKKKKKKAKKKKKKKKKKKKKKKFKF<>??===<====<==<<=====<==><=<==<>>>=>>=>>>=>>=>?>=>?>>>>>=>>7=>>>>>>>=>?>>>>=>>>>>>>>==9>=??????>:=<>=???=????>>??>>8??>@=@@?@??:@@??=@?@=<=<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@9?@@@@<820?9???>?>???>?1*9?=>>?75@?>?@??>??>?>>=>>>>>>>=><>>><=><=>95):=>9>=>>>>=>>=>>>>>>=>>>>>=>><>>><=<=========<==<===<=====<=>??>=:= MC:Z:151M MD:Z:4G146 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:A>>=(>?>??=>2?>??>??<=?>:??>>=>>=>>>=>>>>>>>=>?>>>>=>>>>=>>>=>9><>>>>=>>=>>>>>>=>>>>>=>=>>==<=<=========<==<===<=====<===>=>>==>??=>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKKA,>>>>?>>>>>?>>>>?>>>>>>?>>>>>>>>??>>???>;>>>>>>>>>>>>?>>>??>??>??87=>>=>::??????,=<,<@=?@>>;@?@@?9>//*(9(:?@BA=*/:<<;<9 MC:Z:151M MD:Z:133T17 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKFKKKKKKKKKKKKFKKAAFFFFFFKKKKKKK,FFFKKKKKFA,AAKAFFFF7,AFK<<,AKKFAFK==:.89=94=>@??<@?>>?<>><<3=>9:,$84;;><;6<0;<9<8?>>>=<(9+(64=<<8=:7;9>>>>>>>>4*>>>=>=;>5(,>>>>16=9>9@?>;>< MC:Z:151M MD:Z:8A8C133 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:#########################################FAA7FFF<,AAA<7AFKKKAKKFFKFFFFF?@?A@9>=@@;@?@@@?@@@>??>???>??>?@?>?@??>??>???>???????=>?>>>>=>>>>=>;<=>9>=>>>>=>>=>>>>>>=>>>>>=>>>>>>=>=>>>>>>>==<==<===<=====<====<==<<==>@?><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKAAKAFAKKAAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1211:14346:10697 163 1 14804838 60 151M = 14805276 589 GATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGCATGAAAAATCACAGAGGCCCCTATTTTGG ;<=>??>>>=>=8>>>=><>>>>99>>>>>><9=>>->>>>>>;>>>>>>=>>9>>>>=<>;6<)<;<>>.2>=><:7=;;=:>*3?=73>9*...>9;0&>8@.<@@?=(7????@??;>':/>A;;??94@>AA0;>'$$$1A@?::## MC:Z:151M MD:Z:121A17T1A8T0 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKFKK7FKKKKAFFFKA7FKFFFFKFFKK,FKKFKKAFKFFKKKKK7FKKKKAF<7A,A??@?@??>=?@?>>?=>??8?9?>?=??>???????>??>>>>=>>>>=>>>==5;=>>;>=>>=>>>>>>=>>>>;<>>>>>>=>=>>>>>>>>><==<===<=====<====<==<<===>>?>>;8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<77FA7FA7,7KKFFAKFKKFFFKKKKFKFKKK@9/?=0+?;.:>>7?:=<>>.=>???>?@??>??=.8>=>>>>>>>=>?>>;><>>>>=>>>=;9>=>>>>=>>=>>>>>>:>>>>>=>>>>>>=>==========<==<===<=====<====<==<<===>==>>>=???==? MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:#FAAAKF7,FA,,?>>>>==>=>=>><>>>=>>>??>>??>>>>>=>>>=>>>>>>>=>?>>>>=>>>>>>>>=>9>=>>?=>>=>>?????=(:?=?>?>?@:=??>???????>????>@??@@>>=@@@<@@?@@???9A-?->A@@@@>9:8; MC:Z:151M MD:Z:87T63 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKFKKKKKKKF,AKFKKKFKKAFFKKKKKKKKKFKFKKKFKKFFAA=?>3/1(;<&(;85>>4.).;'>>77.<00.90(5/;01.7(9>><8:===>9>>>>>><=><:-7-:.8>>=>>?<>=/; MC:Z:134M4D17M MD:Z:7C35A18G43 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:3 MQ:i:60 OQ:Z:#####################################################AA<7A7K5?<>>=>878>>==7;;>518=<9;=;>>>>9=<:>====>9<:><7>>>9<,,0(.715<9,04-0;<-;)7;7.:->/;:7>><=><>::>???6=8)/:<:?5<<;?;>>)<'.:=9866=<@@?==?:;6-:9?>;;9<:## MC:Z:151M MD:Z:67G83 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AAAFFFKFFAAFKKKKAFAF<7);-.)@=8),7.),@??>=:<.4:??959????@?>>:=5>??>>>8);9=>>>8)>>)1=';/>?>>>>><5=9;=<>>>=<=<:956-1>>>>=<>>>?>>=,=>>=7>>>>>>=>>>?>>>???=;> MC:Z:151M MD:Z:74T50G25 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:2 MQ:i:60 OQ:Z:###FAKA,??>???>???????>?@>>=>=>>>>==><=09>=><>>=>>=>;<(>>;>>=>>=>>>=<*9>>>>=>>>=>>=>>=======<====<==:<===>=====<==<===<=>>?>>=>??=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:##KKKAKKAA7F7F,KKFA>?><==<=>=<=>=====<===<========>?>>>>=>>>><>>>==9>;=>>>>>>=>>>>>>>=><>>==>=>>>=>==>>>>>>??=??>???===???>?>??>???79@@A@@59@@?@>=:8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFFKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKKKKK=+68@=?8@><;2<@26<8@=>???>?6???<>=97:=:<>=?;=>>>>>>=><:>><>>9<>>=>=>>>>>>>>>==>=>>>=>=88>=>>=>=>>==>>=>=====<==<===<===:==<===;>>@?><>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<>97<;4)9-))=71:=>=51=>><>;898<<:;>>=;;01>:)/<>=6=====<==93=9<<47>>;<<==<6>3?>:<= MC:Z:151M MD:Z:7A18A11T1A22G87 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:5 MQ:i:60 OQ:Z:############################################FAA,A,A@=;>?@==>>=?:>>9=9+.*=:+<-)<,4;><7>>>>:>>>>>>?>>>>>>>;==;:>>?>>>>>>>=>>=>><=>>>>>>>><>>>?=;==>>>>>>>====9==>>>>>>>??>>=<>=>>???>;;> MC:Z:151M MD:Z:1A149 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:####F77,FKFAAAAKFAFFAKAFF;;?????>>???>>>>====>>>>>>?>>>?>>>>>>>?>>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>>>>>>>>>?>???????????@?@?=???=@??????????@???@@AA@@@@@@@AA@@?>=:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AA==>?>>?>=>?=====<===<=======<=>====<=======>=<9=<=>>>>8=3=>>>>>:0==>>==>=;>==>==>>>>>>>>=>>=>>>=>>>>>=>9>>=<>=:<>?@??????>?>??>>=??@??>>?@?@@@@@>==<:7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A@9'*@>/;5>>?>/>9?==?@=0;1>>>>8;21<*=9>==%%81*8::(7=<=:**6<%=<80>><==*<5>>>=2;><>>:=>>=>>><=:>8==*=7<<=8=8=:===<==<<;=<===)=24=;==>>?>::896=?; MD:Z:10T7T31T100 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 OQ:Z:######FFA,,AF7A?:;72>9-)3@937?@8@??=@@???>?@@?>9>?>??<;=5:03<>????>??;>=2>>>>=><=>><:==>>>>>>>>><>>=>>>=>>>>>=>>>>=>>==>>>?>;>==<<=<===<===>==<===<==>==<>?=>=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FAFA77<<,,,KA7????>>=>>>>=:>>>=>>>>>>>>>=>>>>>=>>>>>>9>>>>>>=>;>>>>>>>>>>>>>>>>>=>>??>???>????=??==8???????;>=??@>6>7>@>@>@@@><@@A@=?=@@=@B@@<7@AA=>;:98 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKFFKKFAAFKFKKKKA8@=???@???><<>9.?<@2?>>>=>=:9>=>>>>==>=>>>>>>5>>>>>=><9>>>=;:;;>7>>>>>=>>=>>>=====><=======<<===>=====<==<===<===>==<==>9==>=>=>>?>???>@> MC:Z:151M MD:Z:33A117 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:####A7A><,<;;=?;>>88-:??<><>>>??>>>>=?;>>>>>>>>>?>>>>>>>>>>>>>>>>>>>>>>>=>>>?>?>>>>>??>>>>=>>>>>=9>>>>??>>>=><>??>>>>??>>???>:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:#AA,,,KKKKKKKAFFA,AAFKKKK@A9=-/*=@=A@@@@>@A?@=@?<;.)8.?=?>8=?????????????=>?????<5?????????=>>=?>>>>>>>>>>>>>>>>>=>>>?>?>>=>>>?>>;>>>>>=>>>=>>>??>>>>=>>>?=>==>?>>>>??=<;- MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AF<,AFKF?>>>=>>=<=======<=>====<======>==<9=<=>>>>>>=>>>>>>:>>>>>==>=>>>=>==>>=>>>>>=>>=19==>>>>>=>=>>=>>>=>=>@???;????>???>???@?#?>??>??@??7@@>?@@@@>8;:: MC:Z:151M MD:Z:85A40G24 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AFKKKFFKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKK#KKKKKKKKKA?>?>>>>>>>>>>>>>?>>>?>>>>>>>?>;>;<>>9>-;=>>>><;>>>>>?>:>>7>>:>99>?>0>??8:<>?>?9<;>(?<.:;>?<>;7/,>;@@??@@?:@=?@@@@A@@9/?19A8--*+0?:??>.:;696 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFFKKKK,AFKKKKFAKKKKKKKAKKAKFFKF7FKF7FKKFFFAKKKKFA???>>>====<=======<=>====<========<<8========>=>>>>>>>;=>>>==>=<===>==>>>>>>>>=>>=>>>=>>>>>=>=>>=>>:=>=>;>???>???@??>>??>??@=@?7?>=@>@@?<;## MC:Z:151M MD:Z:149T1 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAFKKKKKKK>AA=AA<@@@>//@=@9@@==@@@?6@@@@@?????@??????????=>>?;;?>?????=?>?>?>>>>>>>>>>>><>=>>>>>>>>=>>>>>>>>>>>>=>>>====?>>>>>>>>=?>><>=>=>>>>>>??>=<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:##AA==>>>==><=>====<=>=====>==9>=>>>>>>>=>>>>>>>>>>>><;>=>>>=>==>>><>>>?=??>?>?>??>???>?>?@????????>?????@@A@@??@@?@A>@@?@@A@AA:A?AA@?@?;769 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKAKKKKKKKFAKKKKFAKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKFKKKA@@A>?A??@??>?@A><@9?>?9?>????>>>>?>????=>>>>>=>>>>>>=>=>>>>>>>>>=>>=>>>=>>>>>=>>>>=>>==>>>?>>>>>=>><===<==>>>><>=><==>==<==========>=<>>>>>=???>@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:KKKAKFFFFKAAAFKKKKFFFFF7KKKFKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1114:23399:48705 99 1 14804888 60 151M = 14805151 414 AAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGT >==>>?>>=>?>===<========<<8=<=======<=======>>=>>==>=>>>=><=>>>>>>>>=>><>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>?@??>>??>??@??>??@>??????=?>@@@???@?==;9=6,-@;<=;,98<.?=:>:==?????????????@?>>>;?<=<6;<;>=>>>948>>>>>>>>>>>>>>>8;<>>>?>?>>>>=>?>>>>>>>>>>>====>??>>>>>===>====>?>=====>>==<>>=>>>>>???;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:##AFFAF7,,F8;>@AAAAAAA@0@>@1?@@:?@A@<7@@6@@@;?=@@>:?@>????????????>?????????????????>>>>>>>=>>>?>>>>>>>>=><>=>>>?>>>>>>>>>>==<>=?>>>>>>=>>==>====>>>>>?<><:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAKKFAFFFAFKFA,KFA,FKFFFKFAA?=>0??>=>>>7>9=;>>>8;38;('48==8=<===>?;+;;==>><;=;=<9>&81<>6>9=7>>>?>>>?<-8==>>>5:=(-)<%/,>;;??;>???@;98>6>########################################### MC:Z:151M MD:Z:25T102T3T3A1T12 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:5 MQ:i:60 OQ:Z:AAFF,KKFFFKF>>>====>=>>><>9>=>>>=>==<=>>>>>=>>>>>=>>>>>>=>=>>>>>>>>>=>>=>>>=>>?>?????????=??????????>>?????????@?@?@@@@@@A@:?@@A@@@@@@?AAAA<=AA@AA>AA@>;86= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:>>>03,0->9=;5*5-+?.>>>>2><)>=:3,//02;<8-805,:)=<==;<,==7;9=-37==<><;><7>91>?;@> MC:Z:151M MD:Z:9T3A2T8T7T31T21A7G8C12A33 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:10 MQ:i:60 OQ:Z:##########################FKA<<,,(A7A7FKKFFFF?>@?>@>?>?????>8)97??????????==,=:+.7&>?;=;><<-<6>>>>??>79>>>>>04>>>=??>>>>=>==9<=>=6=>=>6>>>>?>>=<9 MC:Z:151M MD:Z:0A10A0A6A4T55G70 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:6 MQ:i:60 OQ:Z:###############################AA,,FAFF77FAA7FKFKKFKFKFKKFKFFA,<7KKKKKKKKKFAF,FA,,A,FKAFAFAA,AAFFKKKKKAAKAFFAKKKKK77KFKFKKKKFKFFFFAAFFF@>?A@A>9?@=?@;>?@@96>?=>?=????>?>???>??=???>?>=?????>>>=>>=>>>=>>>>>=>>>>=>;==>>>?>>>>>=>>=>>>=>>>;>>=>>>>>>?>=<==>=========<=====<=======>??=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KAKKKK>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>>>>>>>>>>>>>>>>>>>??>@>=?=???@@??????????@?????@@??????=@@??>@AA@@@@@@@>@?@@@=A@@@@:==8>>>9><>>>=>=;>=077;5;9==(<,1;:?>><>=>;>>><9<>>>>>(=0&---;>>>&7=>>>>);;>>>>17=6*59$6<9<;>650:2>=?<>+,+(5>@=;??18<############################ MC:Z:121M30S MD:Z:37A22A2A14C6T6C23C3T7 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:8 MQ:i:60 OQ:Z:49:@@@9+3>?@:>99@>@?<@?@?????>?;>??>??????>?>?????????>??>>>>=>>>>>=>>>>=>8:)>>>?>>>>>=>>=>>>=>>>?>>=>>>>=>?>>=>>?>>=======<=====<======<<=====>?=?=8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A7F7AKKA,7FKAFF<7KFKKAKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAF,KKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:2220:14336:54102 163 1 14804903 60 151M = 14805087 335 AAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTNCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGAT <>>>>>>>==<8=<====>==<==>>>=><>>>>==>=>>>=>==>>>>>>>>=>>=>>>>><>>=8>=>>=>>==?=>?>>>>>;<#>>>?>???@??>>??>>?@??>??@>@?@@@@@@?@@@#<<@@?A@@@@?A@AA@BA?>;88> MC:Z:151M MD:Z:87T63 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAFKAAKKKKKKKFKFKKKKKKKK@?A>AAA@>@@@@9=7@?@@@@@A@@@A?=???????=?????????????????@?@??=>=@@??;???>?>>?>>=>>??>>>>;>>=?>>>>??>>>>>>>>?=>===>>>>>>>>;<>>>>>>??>@<=<<9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:#FAKAA77<,,?>>??>==9>========<============<<=<>8<<=<<=>>=>>>>=>>=>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>>?>>==>>=>>?>>=>>@>????????>???>?>??>????>???@@?@@@@?><;:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKK<7AFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKF UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:2108:15392:72350 147 1 14804914 60 2S149M = 14804706 -357 GGGGATGGGTGGATGGCAGTTTTGGACACTTGAGACGCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTN ##650?3<@AA;A@?;5<9A/?@@;:4?;@>;@7>.'@@@>?9>?=58/=>=7-??>?=:>80<5<*=>1>><=>=?>:(>><;>>?>>=<>>;>>?>>=>>><><==>><7>><>=<=>>>>=>====>-===>>=<=<===>=?;><<# MC:Z:151M MD:Z:34C113T0 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:##F<,<7AKKKAA:<>>?>>>>>>?>>>>>>>>>>?><>>>>;>>>>>>>>>>>>>>>>>>7;>=>?<=>>>?;>>>>>>>>><>>>>>>;?>>>>>>>?>>+=<=>??>7<==??>?7-6997,6?-19)2.-?'9>@;><################## MC:Z:151M MD:Z:126A7A3T12 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFFFKKKKKKAKKKKKKKKKKKFKKFKFKAFFFFKFFKKKKAKKKKKKKKKFKFKKKKAKKKKKKKKKFK,FFAFKKK7AFFKFKK7,A7A7,AF,7<,7,,F,AAK?????????>??>???>?????>????>??>>?>>?>>>>>=>>=>>>=>>>?>>=>>>>>>?>>=>>?>>>>>>>>>=>>>>>=>>>>>><<=======>==<=<=<==<======<>?=?=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKFKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:4:2109:5355:66039 147 1 14804923 60 151M = 14804562 -512 GATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTT ##::=?A:/>A@<=A?72/9???>7@@@@@@;<>9?@?;;=6?,-?>>:@:9=7?>?@=?@@@???@@>=;:<>>>?>>>>>?>>>:>>>>>>=>>=?>>>>>>>>>>????>???>???=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:##AFFKKA,?>======<<=<===<=<<========<=>=>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>>?>===>>=>>?>>=>>?>??<>>???>???>?>??>????>?????>?@9?=@>@?>@>@@@@@@@@@A@@?<:?@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKK??>><<=<===<=<<=========>=<>>==>>>>>=>=>>=>>:<>=>?>>>>><>>=>>>=>>>?>>==>>=>>?>>=>>@>>???????=>??>?>??>????>?????>@A@@???@?@@?@@@@@99AAAAABAA?A?=?<8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@?@?@@@@A@????????????????>?????>???@?@>>=>>>?>>>>>>>>=>>>=>>>??>>>=>=>>?>>=>>?>>>>>>>>>=>>>>>=>>>>>>><>>>>>>>?=>>===<==<======<=>?>>?>>>==?>?><*>:9/2*/;**/0?><7<8-2:;36**/>8;==2<6==6->=6,->8>7*==;;>6?>><<>;:=80;;<>>9<>=>==>><,>;6:9=/;8<4801.<0/9-/:,=====<,=>==>=>=>=<>;>:==> MC:Z:151M MD:Z:22G96G31 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:A<,,><><=>><=9;=======<<<=<===<===>>=>=>>=>>>=>=>?>>>>>>>=9;>>=>>>?>>==>>=>><=>=>>?=>>>>>>)<><=?>>>?<>????>?:???>?@??>?>@1:>>?/?0@??@@A@@A@@A@?@@@==### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFAFFKKKFFFKAFKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKFFKKKKKKKKKKKK,AKFFKKFKKFKKKKKKKAKKKKKKKFFKKF7AFKK,A,AFKFKKKKKKFKFKKKKKF### UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:6197:55614 147 1 14804939 60 4S147M = 14804810 -276 GAAGACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTCCCTT #############@?;@=>8*7=),-.)>>@7>@:??@;818=1;9,<;>-7/????=7=8=<,:(8==<6<8?>?=4(==8++,=78(=>>>>>>=8=8,>6>6<>>>=0489>>>>>>>===>>>>=(6?0,?>>>>><>>=>>)<<>< MC:Z:151M MD:Z:142T4 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:#############KF=>8<9+.0+7?A=@@@@@@@>@A:A>?>@@?@????????<<=<;7??@@????????@?????@?=??>;8>::>;>>>>>>>>>>>8=>>?>?>>>>>>>>>>>>>>>>>?>>>=>>>>>>>>>>=>>>?>>>??=;:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:#FF77F<<7A<,,,,7AFFAFKKKKKFKKAAFKAKKKKKFKKKKKFFFF<??>>>>>>>>>>>>>>>>>>>>?>?>>>>>??>>>>>:>>>>?>>>>>??>>>>>>>??>?>?@@??>???>?=????????????@?<:7:???@@@7?@?=8?A@=?@@@@<>>>>>>>>>>>>>====;:>>=??=>>><>>>>>?>>>>>?(8=>>>>>=>>;;>??>>>>>=>>?>>>>>?>>>>>>>>9>>8>=>?>>>;?>>>>8>?9<@;A6=@@>>>4<994 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKFKKKKKKKKKKKK,AFKKKKKFFKAFKKKKKFKKFKKKKKKKKKKKKKFKKKAKK7FFKKFFKAFKKKKKKAKFKKKKF@>?=>>>======<=<==<===<=<=>========<===<;>='8>==9>=>>?>>=>>?=*<>>>4>>=>>>;>=>>=6>>>=>>>>>=>?>>=>==1<3=>>>>??>?=4*>@>???>???=??>=??@>??@@?@?@??==8>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK,??@<>*@@???;????;?778=?>@>:*=?5:?=??==>>>?=<==>>=>><>>=>>?>>>=>81>>=><10>=>><;>>==>>=>>>>?=>:>=>:>><>>====<==>==>==<9<===<==<===>==<===>>>=>???><> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:???><>/>=8;<=>><>=>>;=<;=?>=&<><<>>>>>>>>>?>><>8>>>>?>>>>>;;=8/8>=>5=>90<1>0=;?.;.(9///???.:*.;>@?>../..8@@@>?/:./>?<1A@A9=@A>/6=:@A>AB:9<:A1,:= MC:Z:151M MD:Z:32T118 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKAF,FK7?=>??=>>>>><=<==<===<=<=;========<===<===>=>=<>>=>>?>>=>>?=>>>>>>>>=>>>=>=>==>>>>=>>>>>=>?<>=>=>=>>=>>>>>>=>>@??@????>???>??>???@>?>??>??@?@??@@?::;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAKAF UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1123:29701:26782 99 1 14804957 60 151M = 14804983 177 TGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTTCCTTACTCTTCCTTCACAAGCCATAA >?=>??=>>>>><=<==<===<=<=>========<===<===>=>=<>>=>>?>>=>>?=>>>>>>>>=>>>=>=<>=>>>>=>>>>>=>?>>=>=>=>>=>><>>>=>>@??@????>???>??>=??@>?>??>6?@?@=??@?>=;>>?>>==><=<==<===<===;>>>=>=>>=>>>=>>>?>>==>>=>>?><<>>?=>>>>>>>>=>>>=>=>>=>>>>=>??>?>?@.===>?>??>??????>?????@?@@?7@@@><@>@@@A<@;@><;A@@A=AA;;@@=;:=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FAFFKKKKKKKKKKFKKKFKKKKFFK???>>>>>>>>>>>>>?>====<>>=>>>>>>>>?>>>>>>>>??>>>>??>>>>>>>>?>>>>>?>>>>>>>>>>>>>>>??>>>>>>>>>>>>>>???@?@??@?>>>??>??@???@?@?@;@??=@??)==@8=@@@A?><;;# MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:A<@?A+=:@@68/@=<<7?@>?>;???????@???>????==>;==>=>>>>>9==>><>><>?>>=;=>=>>=>>>>>>=>>?>>?>><<<>>>==;9===>==<==<===<=========>===>?=<<>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KFFAA<<?>>>>>?>;>>>==>=>>?>>>==?>>>>>>>>??>>>>??>>>>>>>>?>>>>>?>>>>>>>>>>>>>-8?>=>=>?>??>???@?@.<+?>>??7@??@?>?@?<=><=(@?8=######### MC:Z:151M MD:Z:137A4G8 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKFAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF,AKFKKFKKFKAKF<.?69@@?=<8@?>/)9/19*?>87;:<>;<7A?@@A@<@?==9>>????>@??<=6???@>??@?>?=<,@??>>>@>>>>>>>>>>>>?>>==>>>>?>?>>>>>>>>?>>>>>>>?>>?>?>>>>>>>?>?>:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:FFKFAA<=?@?@?@@7?A@@@@??????>>58??????>?=)7?>><>:??:=?><3:>4=>9>>:>>==>>=>>>;>>>>>>=<>>>>>=>=>>>>=>=>>=>>>>>>?>>>>><=<==>=====<<=====>======<<>??=;8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:#KKKFKKFFFFKFKKKA59>?>>8??????;;>>=7/>>>>>=>>>>>>>=>=79>>=>>=>>>=><><>>==>>>>>=>=>>>>=>=>>=>>>>==>=====<=<==>======<=====?==>==>==>>>?=;>?> MC:Z:151M MD:Z:5A145 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:FFFA<,FA?????@?@?@?@????>?<>???=>=??????>???=>=>><<>>>>>=>>>>>=>=>>>>>>=>>=>>>=>>=>>>=>>>>>>=>=>>>>=>=>>=>>=:>=>=====<=<==>======<=====>========>>>>?<>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:19??>==?>?>>>?7>?>>?>)<041'5=;8?>>?>>>?>>>>>>>;?>>>=>>>>>>>?8<8<>>>>?>>>>>6;?9>>>=8>=;,).8=?;>?@?..-98;>+'>?;>??6.=5:'/7*=:@:>A@A7.;>@@@@>######### MC:Z:151M MD:Z:122A20G7 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:A,AFFFFFKKKKKKK>@?>>?>??>>?>>>>>>>>>>>?>>?>>>?>;5=>>:>?>>>>=>>>>>><>>>>>>=>>>>>???>?>?<3.>??@5?=;=>>@>?????????>??>?@@@@@>@=9?@@@?@@@A@@>A@??A??9==8<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF7FKK?;7?;)-?<@@?@@?;=<?::;=@@???>9:7?>??>:-@@?>@??@@??>=8@?????@>?>@>=?>>>?>?>>>>>????>???>>?>>>?>=><>?>?>>???>>>>?>>>>>?>>>???:=< MC:Z:151M MD:Z:146 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:##############F7;?>???>??>>?>>>>><>>>>>?>>?>>>?>>>>=>>>?>>>>>>>>>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>>>>>>??@>?>>>?????@?????@>@??@???????>???@>>@@@@):>@?>=:<>?8>??>>?>>>><>40<:4?>>?>=8?=>>><>96?:>48>>=>>>>?>>>>>>>>?>8>@>??2<;??8?>>?:>;??>>>8;?>>??-,7,,<<0>???A?@@<=<)/);@6-(./9>*@4/>*2<)>=*?#### MC:Z:151M MD:Z:93A30A4G7T13 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:4 MQ:i:60 OQ:Z:AAFFF?7<.@@@@@@?;7@@?>=5*6??@?????;8=?????==???????????=????9??>>>>>>>>>>>>>>=>>>>>>>>>>>>>>?>>>>>>>8>>>>?>>==>>>>>>?>>>=>>>>>>>@?>==9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:######KAAA7<(<7KFF==-@>>?>>>><<>>>>>?>>?>=>?>>=>>>>>?>>>>>>>>>>>?>>>>>;=>?>>>?>>>>:???;???@????=????@???;????@<@????????@??@?=A@A?>A@A@@@@@@@@>@:?@A??@AA?@A>?>=;8<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:AAFA,KKKKKKKKFFKKKKKKKKKKFKFKKFKKKFKKKKKKKKKKFKKKKKKKKAFKKKKKKKKKKAKKKAKKKKAKFKKKKFKKKKKKKKAFKKKKFKKKKKKKFKKKKKKFKKKFFKFKKKKKKKKK>??>>=>>>>>>>>?>>?>>>?>>>>>>>>?:>>9><><>>>?>$/>>>5=?>>>@;=?><;@?>>8?<4=<2/6@@@?<@?@=?@)79??@@@<#### MC:Z:151M MD:Z:48C102 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFAFKAKFKFKKKKK,7FFF7FKKKKKAFKKAFKKFFAKA7FAFKAKKKKKKKKKAFKKKKAFKKAAKKKKKFAAAF7,>????>>>78.>;:?=><>:>>=>>=>>>=>>>>>>>>>>>>>>>=>>>>>==>>>>=>>>>?>>>>>>>===>===>>=<=>=>=>======8<=============>>>>>>=>??>>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:====<=====<===<===========<>=>>>>>>=>>=>>>=>=>=>>=>>>>>><<=>>>>>>=>>=><>>>>?=>>>>>>=>?@?>?>??>?????@???????>???????>:??>@@A@:?@?>@??@?@@?@@>=:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAFA'>:9@<@:)88?@?>???>;=>7<;>?????@????????????@??>:>>??@>@?>>>>>>>>>>>>>?>?>>=>?>>>>>>>>=>?>>>>>>>>>>>?>>>>>>>>>?>?>>>???<=?< MC:Z:151M MD:Z:3A147 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:#####FFKKFA==<=====<===<===========<=<>>>>>>=>>=>>>=>=>=>>=>>>>>=>>=>>>>>>=>>=>>>>>>?=>>>>>>=>>;?>9>??>?????@???????>?????????????@A@@@@?@@=?@?@@@=@@@>;:7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKAKKKKFKAKKFKFKKF UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2108:5101:51711 163 3 17077053 60 151M = 17077363 461 ACCTGCTTCCTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAACTTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTCAATTCAAACTCTGCTGTGTAGAAG =6=<=====<======>===>>====>=<>>>>>=>>=<>>=>=>;>>=>>>>>>>>0>>>>>>=<>=>&>;?<>;??????>??.=&><=?>??>???>>:@???7??:?9?@@+>>@/?)1./@81@0'A9AA@########## MC:Z:151M MD:Z:74A51A14A9 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKFKKKKKFFKKKKKKKKKKK7FKKKKKFAKKK,A?:??>>>>=>=2<=<===========<=<=8;===<==<===<;===>==>>>>>>>>=>>>>>>==><:6>>>><=>>>>>>=9>?>=>=>>=>>>>>?>>>>>>>=>???????=??>??@????>??;>?>???@@@@>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAA<==@?>>>>3;>?>>>>>>>>>>>?>>6:>>>>?>>>?>>>>>>?><>>>?>>=>9>>>>=>>?>>>7>;>>?6<>>>>>>>>?>;>>>?>?>>@>@??>??,>(:+6,6:;>>=??6,9-<;638-;7@>:??8;?@<72.-)8><### MC:Z:151M MD:Z:103G5G38A2 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:A8:<<@?6<.>??=:<92;<-/>;4:-:7??>?8>??;*?95->?6/<9??<6:==???=>=490;/5>>>:*;==;=><>>7=;5;;>==>>>>?>>==0;.<;>>;/:>>;=;=>=>==<<<=====<=;0==<=:70===<=?=18?= MC:Z:151M MD:Z:42A29A78 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:FKKKFKF7<,<@>=?@@@??>?>???>?>??????>??>???>???>>>=>>>>>>=>=>>>>=>=>>=>>>>>>?>>>>>=>=>>?>>>>>>=>>>>>?>>>>>>==>=>>=<===<=<==>====<=====<=====<=<>==>>=>>@?=>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKAFAKAFAKKKKKKKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:2122:17411:52924 147 3 17077062 60 151M = 17076813 -400 CTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCT <67?A@@?:5+;@@?@@@@@??@>?@@?>??????>?>???=>?>??=>>>???@?????6?=>>?>>>>>>=>>>><5>>>>>>==>>>>>=>>>=>=>>87873===<=====<====>????>=: MC:Z:103M1I47M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AKKFA,<7,KFKF?>?=?@@@@@@@@@??@????????@??=@??????@?>???@??>???>?>>>>?>>>>>>>>?>?>>>=>>>>?>>>>>?>?>>?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>>>>?>>>?>>>??>>?>>>????>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:FFFFKKFFAFKKKKKFKKKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:6:1120:25712:20120 147 3 17077063 60 151M = 17076752 -462 TGTTCCCACTTTTGTGGCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTGTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTG ##################?>@?))).>@:)9>))8>:7)-;>@==>(??6<52-8=>>=95?;?<>??;?@???<.7?;>>:(,';>&>>=:6>>>>>>>>7;->>>>>>>>>>73++,;-54+,=7=<>7?;>>??8580;>>>?9;9=- MC:Z:151M MD:Z:16C70C62T0 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:##################A;<=>>>>>====<=<======<==<===<=<=<==<====>><>=>>>>>>=>>=>>7>>>?=>>>>>>=>>?>=>=>>=>>>>>?>>>>>>>=>>>>>>>>>>>=??@????>??=>?>???????>=?>???@@A@@@??>>;:9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKFAFKKKKAFKKKKKKKKKKKA UQ:i:0 AS:i:151 +HK35MCCXX160204:6:1221:21054:54453 83 3 17077067 60 151M = 17077030 -188 CCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCC 7878??@@@@@@>:7@A@@=>>??;>8=?@?<>>>;@?????@???>?=>??>>>?>>>>>>>>?>?>>>>>>=>?>>>=>?>?>>?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>>>>>>=>==>?>>>??=>?>>>?>?>>??@?>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:AAA7KKKKKKKKFA7KKKKFFAFFAF7AKKFAFFFAKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1203:18994:66214 99 3 17077070 60 151M = 17077224 305 ACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAACTTGTCCAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAAT >9>???7=.=>>=<=<======<==<===<=:=<;=<======<>==>>>>>=>>=>>>>>=?=>>>>>>=>>;>;>=>>=>(=>>?>>6>>=>=*<>>>=>>>>>=>8???>?>??????>>@?>>????@@A@??@A@<;;;A MC:Z:151M MD:Z:89A5A55 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFK>?>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>>>>>>>>?>?>>>>>>>>?>??>?@>@??@?@??????????@???????????@????????@A@A@@@A;?@AA@@A@@@A@AA@BAAAA?A?>=<86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKFKKKKKKKFK><======<==<===<=<#===<=====>>>=>>>>>>=>>=>>=>>>?=>>>>>>=>>?>=>=>>=>>>>>?>>>>>>>=>>>>>??????>?????>?>???=?>??@?>??@@@A?>@?@@A@=@>@@?@?/73:@ MC:Z:151M MD:Z:24A126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFFFKFKKKFKKKKKAFFKKKKFAKFKKKKA,<7A7 UQ:i:2 AS:i:149 +HK35MCCXX160204:4:1114:8887:45470 83 3 17077081 60 151M = 17077038 -194 CTCTCCCATGTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCAC 4=8<>>?7>5@;>80AA@>666:8:???>@?<=?=??*'@?@???>?@@@@?@@@??@>?><>=>>>07=>>?>?>>>>>>>>>;?>>>??<&>>>??>>>?<>>>>?>?>>>?>>>??>>?>???>?<>???>>>>>>>?>;=>???=>> MC:Z:151M MD:Z:0A8T141 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:7AAKKFF7A;:;?=%&>>>?>>>>>>>>>>>>?60>>=>>>=>?>>>>>>>>>>>?>>>>>>>>>>>>>>=?>>>??>>?>>>?>=;%==?>>==>=>>>>>>>>>>>>>>?>>>@> MC:Z:151M MD:Z:7C4C108T29 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:3 MQ:i:60 OQ:Z:FF7FA<,,FA<,,KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK77KKAKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF<,KKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:33 AS:i:136 +HM3G2CCXX160308:2:1101:29031:56528 99 3 17077090 60 151M = 17077406 467 TTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCT >@=??>>>>=>==<<=<========<===;<=<==<======><>>==>>=>>;>=>=>>==>>>>?><<===>=>=,>=09<>=>=>><>>=>=>>==>=>>>>>=>8(>=:4=>=??@?>????>?==>1:@?@?=?@@>=;:A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAF<:0&5>>>=>4<>>>7>=>>>=>=>>?>>>==>>>>>=>>7:>=><>=<==<==>=>=<==>=<====<=======<=<=<===>>=???>@?@??@@@???>;>????>?>??>>?????@?????=>=>>?>>>>>>=>>>>>?>>>>=>==>>>>>=>>>=>=>>?>>>>=>>>>>=>>>>>=>=?><>><==>=>=<==>=<====<=;=====<===<===>>=>??>?>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKFFFKKKKKKKKKKAKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2113:21552:53908 163 3 17077098 60 151M = 17077279 332 TCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGT =<9<=>>=<========<====;<<==<======?=>>>>>>=>>?>=>=>>==>>>>?>>>>=>>=>>>>>>>><===>>?>>>>=>>>=>>????????@?>?????@?@?>2>=?):>>?>??@@66??>?==>@?@A=@1@?7;<;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKFKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF,AFF,AFFFKKKKK<:>=>?>>?>>>>>>=>>>>=>>>======?>?>=====>>?>>>>>?>?>>?>?>>>>>>>>>>>>>>>>>>>=>>?>>>>>>>>>?>?>>>>>>>?>>;>>>>?>@??@??@2=<::# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKAKFFKKKKKKKKKFAAFKAAFKKKKKKAFFFAF7FF>6>?;:=>=>>>===<>>>>>7>>>98?>>3<>>=>?>>>>:?>?;>?>?=;=>><<==>>>>=>?>?<:>>@;???).<,;>9@80?1-9-:0=8@@,@@>@-@4A>()8=A'/(??@@=B8=AB@:7## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AAAFAAKKAFKKKKKKKKKFKKKKK=>?>?>>>>=>=====<==<=<====><======<==>=<=<=>==>>>>?>>>>>>>=>>>>>>>>>>>=>>?>>>>=>>>=>=>>>>>>>>?>=>>>>>?>?>=>>??>????>???????>?>?>??>??>?:@?@@@?@@?==;;6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKK7 UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:2212:21004:54295 99 3 17077107 60 151M = 17077269 288 TGCTTGTTCATGGTTCTGAACTTTTACTTTGTTCATAACCCCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGGGTAGAAGTTTATATCTTATCCAATCTGGCCGTCACTCCTCTTCTATCCCTGTTTCCTTACA =:>>>>=>>==>>>>&;==>>>>=>>>>>>>?>=;=>?>?0;?>?=>:>>>>/<>>>>>>>>>>>>>?>>=>>>>;>?<=4>>>(2>>>8>?@?@??@?@?????59//)0)$-'.0:11:1;=:A@?@@2@@;?@@??;:7; MC:Z:25S126M MD:Z:20A18A49T30C17A12 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKK,FFKKKKKKKKKKKKKKKKFKKKKK7FKKKFK<;>=>>>?>>>-;>>>?;?>>8=>>>>><;>>>>>?9>>><<-->>9>>--5==9>9>>><>>><-:>><<>?@?@9??99=?,(9-2++9-<:;6>?=<>=9.7:?>)'2):(./@?@;(@@9@?A:8/-4,>>@9@@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFAKKAAKFKKKKKKF,AFKKKFKKKAFKKKKFAFKKKFKKAKFKAA,,FKAKK,,>>>??>>>>>?>>>>>>>>?>?>>>>>>>>?>:>>=?>?>?>>>>>>>>>>?>>>>>>>>>>><>>>>>>>>>?8?>>>?=;>?9>>=>>>;>:>2?>?;=>????@????@<>@???=??9?@=@)?######### MC:Z:151M MD:Z:143A7 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKAKKKKKFFKKAKFFKFKAKAF7FKKFFKKKKKKKKKKFF=?>===<==<======><==#===<==>=<>=>>=>>>>>?>>>><3<'9/=>><>>>8>==>0<>>>=>>>=>=>>>>>>>=?;:>>?>>@???0>=????>?==09??>?>?:<>??@?@;=?@@@@@@@?;A@199@=4B6 MC:Z:151M MD:Z:24T27C68C29 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKFKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKA7F,A7FKKAKKK7KKFK7FKKKKKKKKKKKKKKKKKFKAFKKKFFKKFKKKK7FFKKKKKFAA7AKFKKKKAFFFFKKKA?>>??>>>>?>?>>>>>>>>??>>>>?>?>>?>????>>>>>>??>>>>>>>>>>?@@=????@@??>@???@???@@?@@???@?@9>@?@???@A@?A<@7<8?:@@@?@A@A.9@<@@=?=9<@>;A<>@A@@>9;8<7: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:A?@A@AA>AA@A@?AA@??>@@@?>@@@@?@@?@?@????>?>>?????>???>?>??@????>????>?>>=>=?>=>>=>>?>?>=>>?>=>>>>=>>>>>>>=>>>=>>=>><=?><==>=<>=<===>====<>>??>=: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:#FAAKKKAKFF?=?>?>=>>>>==><======<==>=<=<==<=====>=====>><>>>>>>>>>>>=>>?>>>>=>>>=>=>>=>>=>=>>===?>?>=>>?>=>>=>=>>>>8>?>?>?9??>??>?@?>???????>???:=>@@>@???=<34 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA?>??@??????>?????@?????>==>>>>>=>>>=>=>>?>>>>=>>>=>=>>>>>=>=?>=>>=>>?>?==>>?>=>>>>=>;>=>>=<===<==<==<=>=<====<==<===>=====>=>?>?=>8=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:1210:28280:55086 147 3 17077122 60 151M = 17077010 -263 CTAAAATTTTACTTTGTACATAACACCTCTGCTTAAAATTGTCAAGCGTTTGTGATTAAACTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGT ######################@@?94/>.::.7??.@.>7??>05#78<.&.,/.+>.<*7:-.=>;>9<>=..2>==>>&>,<>>;72.+/-(2..>)//281)7(8;=9>=7>7<;><>>=>5>>-=>-582.-95<=?>98::==7- MC:Z:151M MD:Z:2G14T28G13T85C4 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:5 MQ:i:60 OQ:Z:######################FKF<7,A,A<,7AA,F,==??>>?>>>=>>>===>=:>>>?>?>=>>?>>>>>>>>>>>>>=;>>>>>>>?>7>>><=>>?>???>????????9=??@?@??@?@?:<=?????=??:@?@@A@>A?A@@AA@@*.@>>?@48A@-7:?@@B@A=@A<65;59<8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKK7FKKAFKKKKKKKKKKKKKKKKAFKKKKKKKKKKKAFAFFKFKFKKAKKKKKKFKFKKKKKKK,,FFFAK7??<=:=@@A@?@9@@?@@??;@????>?>>?????>???>?>??@??>=:==7<>=>>>>>=>;?>:>>=>>?>?>;>>?>=>>>>=>>>>>>><;/;=>>9>>=>?>=>>>=<==<===>====<=<=>==>=8<=<=>>?=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKFKFFAF=>=<=<==<====;>====;=;<===<=7===7====>>8:;=>>>:>=>=<>>:*=>>>>>?>?>=>>?>=>>>>=>>>>>>>=>=:=>>=>>=>??=???????>???@60??>?>?@??@=;19>99?@?><;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:>>>7>>>>>>9>?>?>>>>>>>>>>?>>>;===>>>>:>>>>=>>>>?><>>>?=>:@==>@6>?6;;????>??@??@@?@?@-8-=@@@:7819--;@@A8A@AA<>(099@:9.487## MC:Z:151M MD:Z:18T119G11A0 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:3 MQ:i:60 OQ:Z:AAFAAFKKF;??=???/45??>=???<4=>>=?>?>>??>>5+>>>>>>;?=?58>6-<-1?>>?<9>?>>>>?>>>>>???>7?@<;< MC:Z:151M MD:Z:6A27T69C46 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:3 MQ:i:60 OQ:Z:###########################################KF<,<<,,F<,,F<,A7A,,,AKKFAKKFKFF,<=<>?>?>>?>?>>>>=>>>=68<>>>>>>>>>>?>>>>>>>>>?>?>>>=:>>?@>>@?>?>=@5?@?@?=??>??@?88<<==??@??@?@?>@<=7=?<>@@@@:A7>==@@@A@AA@@-93/38><################# MC:Z:151M MD:Z:134A7A8 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:AAFAFFKKKKKKKKKKKFKFKKKKF7AFKKKKKKKKKKKKKKKKKKKKFKKKKKFAKKKKKFKKFKFFK7KKKKKFKKFKKKKAAFF>?>?>>>>>>>>>======>>=>>=>?>>>>>>>>>?>?>>>>>>>?>>>>>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>?>>??>>>>???????@?@>>>??@?@@??@????>?????????@@@@@@@@A??<:9? MC:Z:151M MD:Z:122C28 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:>@@@>A@>>=@=<6@@>@?>>>3?>??@????>???????>;>8;=7>>?>?>?>=>>?>=>>><=>>:>>>>=>;>;>>=>>=>?>;>>>>=>>=>>>?>>>>=>=>>==>==<9=#=<==<=<;*>=<=====>@?>=?= MC:Z:151M MD:Z:122C3T24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:#FKKKFKKKFKK<?@@@?@?@>70???>?????>?=:-;7?>@?:916?:5.@>>??@>>=8;<=;;><<8,*-<=*;3=>>8>?>=<;=>5>>9<=4'<;>>==9;7/><=:<====>=9<=====><=;=:<=====>?=9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKFF?>>>?>>?>>>>>>>>>>>?>>>>>>>>>?>?>>>?>>>??>>?>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>??>???@?@@??@?:?@????@??>??@@>.=?@?@?@?@@@@@@@@@A?>;98? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKFKF,AKKKKKKKKKKKFFKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1217:20182:19540 163 3 17077161 60 151M = 17077403 393 TGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTT =><>=?>========<==>====<===<=<====>>>>?>=>><>>;>?>=>>?>=>><>=>>>>>>==>=>=>>=>>=>?>=>>>>>>>=>??@>???>?>?4=?9>?>????>?=?????=?>?<>>@?>@?@@@A@@A@>=<@>;:8? MC:Z:151M MD:Z:107C43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKKFKKKKKKKKKKKFKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>?>>>>>>==>=?>>>=>>>>>?>?>>>>>>>?>=>>>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>@>>???>?????????@?@???>?@?@???@?:=>;?8>82>?A@@AA@?5?>;:8@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKK?=>??>>>>>>>>>>>>>>9>.9=>>5=>??>>>>>?<=?>?>><>>>>?=>>><<1>>?98?>?>::?>>>>>>>>>=;?>@;??>??6?96<9<5?==5>=9-5>=?@?:;7@@>/6,./;=@@@@@@6==>?>>7<8=> MC:Z:151M MD:Z:104C8G37 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKFKKKKFKKFFFFKAAKKFF>>>??====<==>===><=>=<==>===>>>>?>=>>>>>?>?>=>>?>=>>>>=>>>>>>>=>=>=>>=>>>?@?>???:???>????>??<>>>>@??99+?@?>@>??0+5:@A@@;0:6@=?AA4A@A@@@>98>; MC:Z:151M MD:Z:100A2C47 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFKFFKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKKKKKKFKFKKKKKKAKKKKKKKFKKKAKAFAKKK77,AFFAFKKK,,=>>=>0;<5-<7====<===<;;09<8<==<;+6>>>=<;.7./18?.));<.1&,,')21)6:3<20<=4;10><*5,;8;//);/-;>=7:=>&::<<*+:;0,*),0<>?=2<1348>#################### MC:Z:151M MD:Z:7G26G21T9T13T16T4C4T0G2G19T11T5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:12 MQ:i:60 OQ:Z:AAFAFAK,AA<,AAKKKKKKKKK7F,AFAFKKFF,AKKKFAF,A,7,7K,,,FF,7,,,,,<(,AFAF<,FF7F,7FF,<,A7A,7,7,7FKF7AFK,AAAF,,AA,,,,,,:=???>>>>>?>>>>>>>>>?>?>>>?>86>?>>?>>>?>?>>?>?>>>>>>>?>>><>?>>>?>>?>?>9=?,6<;>==>>>+(99<>:66+87==>=>@8=(2)/+6??')*9,;<78-;,;<@################# MC:Z:26S125M MD:Z:100C10G7A0G15C7 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKA7FKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKFKKFAAK,AFAFFFKKKFFAA<A>;@?@@@:@?@>???;>>??>>??<>=>>=>>>>?>=>>>>=>>=>>>?>>>>=>=>?>>>>>=>9>>=>>=>>>>?>=>;>>>>>>>>==>>=>=>====<=>==>??:>;< MC:Z:151M MD:Z:100C50 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:77AF?8?8?>>>=.9>??44???=??>??>?@?>?>?>;>>=>>>?8>>>=>=>?>>?>>=>=>>=>>=>>>>?>=>>>>>=>=<===>====>==>=<>=><>>?=*.6,.>1@>19<<969><<.;4.;>=7>>5=<(3->>854=9;5-*<<:><>:(>=8><<>1>>?:;.<>>>>><==<<4=<==55>>;==>>>=>>><2?@@=?@?@>???>?>@?>??>??@?@?>??@?>???>=<<>>>>>=>=>=>>=>>=>?>=>>>>=>>=>>>?<>>>=>=>?>>?>>=>=>>=>>=8>>>>>=======>=====>==<=>====<===<===<<>>>>>>?>>>?> MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:9>>??>>>>>>>=<=====>=>=<==>=<====<=======<==><>>=>>=>?>=>>>>>>>=>>>?=>>>=>=>?>>?>>=>>>>=>>>>>>>?>=>>>>>>?>=>>?@????@>???>???>????>???????@?@@>@@>>=;;? MC:Z:151M MD:Z:81C69 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:1124:19441:42517 83 3 17077193 60 151M = 17077008 -336 CAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGC ;:;<>@@@@@@@@A?@?>??@?>????>???????>???>??>?>=>?>=>>>>>>>=>>>?>>>>=>=>?>>?>9>>>>>>>>>>>>>?>>>>>>>>?>====>=>>=>=>=>====<====<========<=====<=>>>>>?>?>;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1120:21471:44661 99 3 17077194 60 151M = 17077397 354 AGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCG ?==?>@>>>>>==>=>====>================>=>===>>==>===>>>>>>>>>>?>>>>>>>>?>>?>9=>>>>=>><>>>>?>=>>>>>>?>>>>>?>>??@????>?????????????>??@>????@@A@A@@@?><;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKKKKKKFKFKKFKKKKFK UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2101:11282:13088 163 3 17077199 60 151M = 17077303 255 AGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTC =<>???>=>=>=<==>=<>==><==>>==>=>=>=>>=>>=>?>=>>>>>>>=>>>?=>>>=>=>?>>?>>=>>??>?>?????@?>??????@?>???@????@>???>@@@?@@@@?@@5=;@@@??@?A>=@=?@?A;@AA@:>;8<9 MC:Z:151M MD:Z:69C81 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFKKKKKKKK7AAKKKFKKKF9*3=(2'=9/<>?:=;>)<:?>?>>=>?=>1+>=>=><<>3=>>>>?=<98>>>><'<>>>?=)<>;<>>89.>>==::==>===<===<=<<,.<=======8=>=7=<=8<=>9 MC:Z:62M1I88M MD:Z:1A11A0T2A11A11T24A0C23A59 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:9 MQ:i:60 OQ:Z:################################AAF<,7A,,,A<,FKKAFAF,F=<====<=======#=<=<==;===>?>=>>>>>>>=>>>?=>>>=>=>?>>?=9=>>>>==>>=>>>?>=>>>>>>?>=>>?@????@>???>???>?>??>????????>??>==?@@@@@???@@@6@@@0=%A=:8@ MC:Z:151M MD:Z:24C126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKFFFKKKKKKKKF?=??@9>>>>>>?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>?>>>>>?>??>>?>>>?>><<98>>>>???>>>?>?>?>>>>>?>>>>?>>?>?????>>==??@??84=??9?>>?@?4@(:-;:A?@8=;98< MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFAFKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAAAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFKKKKKA?>===>===<:=<=<=<==<==<=>-;==>><>>=>=>?=>>><==>?>>?=7=>>>>=>>>,<:>?>=>2=82846;>>5<=<;>?59>4=.>;<<=+==?>??1=??>=?<7?>??:;?@61<@?5>@7/*7@@?@@@@/77;# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA=9=4<8-@A@@@@@@?@=?@@@?)@@@A@@;,=?=<&>????>???>=?@?:?@????@???????@>>>>?>>?><>>>?>>>>?>>>>>>>>=>>?>=>>>>>>>>=>>>>>=>>>>>>>>>?=9>>>;=>=>>>>>>?==<>< MC:Z:151M MD:Z:32C4T113 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:2 MQ:i:60 OQ:Z:FA7A7A7,>=?>>=>>>==;>==<=<==<==<>;=<===<<==<=>=><>>===<>?>>?>===<=,<<>>=<>>?,<&<==>;;>=>>>?><=>?:>>>=>>:=>>>>=>>>>=??>??>??,59?==::(&))60*:@-0;<@?><:9## MC:Z:151M MD:Z:55C17A77 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:;<>?>>>>>>>=<=<=<==<==<=>=<=======<===><====><>?>>?=9=>>>>=>>>>>>>?>=>>>>>>?>=>>>?>>>>?=>>>=>>>=>>>>=>>>>>>>>>??>??>???????????:????>????@@@@?@@?>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1107:25702:14301 163 3 17077217 60 146M5S = 17077598 532 CAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGGGTGTGGCAGGAGCC =98?>?>===<;))6=9==1==;=>=<==<3.7:9:>=':5>=>>>=<>>>>>>>?>=;>=%?>=8.<=>;>5??>>?:>9)*2;-5%>0)9*7=8>1???6;?'2:;7);>#################### MC:Z:151M MD:Z:51C84T9 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:A<;88<=A=<@@ABAAA@?7?9@@@@@A@@@A@@;<;@@A@>?=7????@??=:/=?>?>@@@???@?@@@?>???@?>@-@??>?=<@?>>>?>>>?>>>=??>>>>>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>?>5<:< MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:###A=<);;-81>;:6,<-9-(>9,71.2=/>>>?<>>8>>?>?>?>>>>>?>>>>><>>>=>>>8>>?>>>?>>>>?<>>>>>>>>>>>>?>>>?>6>>>:>>?>>>>>>>>>>?>?>=<;> MC:Z:151M MD:Z:1A4G7T14G20C100 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:5 MQ:i:60 OQ:Z:#######KKF7<<,,A<7<,AA,7FFFA<,<<,A7FA<<,A,A,,F<,77,7A7KKKKFKFAFKKKKKKKKKKKFKKKKKKKKKFFKKKFKKKAKKKKKKKFKKKKFFKKKKFKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKFFFAA UQ:i:37 AS:i:129 +HK35MCCXX160204:3:1124:31203:1784 147 3 17077221 60 151M = 17077059 -313 CTTGCCCTCTCGCCTCTGCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGGGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAAT ###########################@>.;<-8<:8@>A>;=,-,-8:/?<.6:9)*1?@?>)??@?=;:;-/,.+566>:=7>>85?>>?>?>>>?>>><=>><<<>>>>;>>>?>>>>>9>>>>><<=>>;>>>>>>?>==?=>< MC:Z:151M MD:Z:2G6A1T5T39T93 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:5 MQ:i:60 OQ:Z:###########################FA,AA,7?@?9:=;<@>@@?;<=?;???>??>????>???>?>>?>=?>>=>=>>=>>=>>>>?>=>>>>>>?>>>>>?>>>>?>>>>=>>>=>>>==>>>>>>>=<<====<===========8===<<===<=<=<=====>>>>???>>? MC:Z:151M MD:Z:44A2C103 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:A>>>>=?>?==>>=>>>>>>>>==?>?>>>>>?>??>>?>9>;::;>>>>>>>?<;>>=>>@????<7>=,>?>@????????????>??@=??????=@@@7;@@@@@A@@@@<2>(;. MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:<-=6=5?8@?@>@=?@?>???@>???>?>?@??@?:>?>?<>>0>????@==>>>=>>?>>>>>;>>>>:<,>>=>>>=>>>===>>>>>><<8>>>><>>>>>>>>>==8===<<===<=<=<===========>??==;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A<,KAFFAA<,A7A7A<6/2<>=:=74:=(0+(/))'-)1&)&;+4179:1<+9-//5/.'.9(6;7,:9'=1><,==5;82686,+<2,=<==<====>:<3-?;/,9 MC:Z:151M MD:Z:11T2T10C17G1G3A31G36G1 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:8 MQ:i:60 OQ:Z:###############################################FAA,A7<,,,FFA,7AKKAK<<<;?>?>=>>=>>=<====<==<===><===<=<=>==0==<==>><>>>=>>>?>=>>>>>>?>=>>>?>>>>?=>>>=>=>=>>>><>>>>9<>>=>>=>>=>>>>>>?????:????>??????>??6>????>?@8?@?A@?>=::? MC:Z:151M MD:Z:39C111 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKK7KKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKFKKKKAFKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKK7FKKKKKKK@?+@?05+/9.@??83:>.9??:?>?@?????:01<<=?(1=3(*?>-><>=7;<>.76>?>>>>?>>>>:><>=>>>><6==88>>>=6:>88==7<89:=<*=<18881=3:=:<18==;=:=<==9;=9<8>:>;78@; MC:Z:6M1I144M MD:Z:36C114 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:###KKF<,A<,7,,77FKF<77A,@A?;@@@@@@@@?@?@???????@@??;=:?@????@???><:??????>?>?>>>>>?>>>>?>>>>>>>>>>>?>>>?>>>>?>8>>>>>>>>>>>?>>>?>9>>>>=>?=>>>>>>>>>?>>>>>>>>>?>:>?>>??>?;>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:F7FKFKKFAKKKKKKKKKKKKKKKKKKFKKKKFFKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKAKKFKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:5:1109:13210:48740 147 3 17077234 60 151M = 17077146 -239 CTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTA =98;>?@=?AAAAAAAA@@@@?@@@@@@@A@@;@@@?@@??@??????@@???@???@?????@>>??@??????>????@?>??>?>>>>>>>>>>>>>>>>>>>>?>9>>>>>>>>>>==>>>>>?>===>>>>>?>>>>>>>?>?:>< MC:Z:151M MD:Z:34C116 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:FFKKKKFF>>>>===>=>>?=>>>>>>>>>=>===>=>>=>>>>>>>?>=>>>>=>?>>>>>?>>>>?>>>>=>?>????????????????????????>????@@;:<@@><@@@>@:@?=:@@@@@@@?AAAA.??ABA?B>1>;:>? MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKFFAKAKKAAKFFAF4?;=;,/>4>8>,<5;;8-=>>8'-;'3?;;>>.(<;;<.'.(-;(-)-,;:;;=>>>1<;(8)'=??%8>69#################################################################### MC:Z:151M MD:Z:15T8C27A2T1T15C12A0T3G13C12G18T7 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:12 MQ:i:60 OQ:Z:,AF,,AA,FF;=???>?>>>>>>>?>??>>?>9>?>>>8=>;>><>6?;;><>?>?>>>>=;>>>>?>>>>>>>>>86==>7?>>>>?>><>>>>>>>>>1?>7:)62<<<93>???=;????9?@39>>A@@,>9=######### MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFFKKKKKKKKKKKKKKKKKKK7FKAKKFK7K??,;>9;(,+<8=>==>><>?>><>8;>>+>&>;0;<:8=>-=,98??/3&.+84>;6>5?-:88@=87)(/4>89)9>???<>>>???@@@@@@?@=7@>?@A?@A@############################ MC:Z:151M MD:Z:4C146 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFF,FFK,AKKA,,,F><>5,8-=>7&;<>?>>>>>>=+3=;>=>?>><>>9>><7>>=<>>=>>>>;>?;>;,8-,(=9>=))0=24>################################# MC:Z:151M MD:Z:7C76G30 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:2 MQ:i:60 OQ:Z:AA,FFKAKKAK<,A,FK<,FFKKKKKKKKF,>>?>>>>?>>>>>???>>>?>?>?>>>>>?>>>>?>>>>>>>>>>>?>>>?>>>>?>>>>>>>??>??>@???@?:???=??@??????????@?????????@??@A@@A@A@@@@@@@@@@@AA9@@>A@?:=@@>?><96> MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKFFAAFAFF<<??@>>>>===>=======>:<<=====>======>===>=>>=<====>>=<>>>=>>>>>>>>>>7>>.*=9>8=97<9><9098>>;:;>>>>;>28>>>>>?/..*:=>:9060<<8&-:(?(>@#################### MC:Z:28S123M MD:Z:6C104T11T2T1G22 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKFKFKKFFKKKKKKKAKAKKKKKKKKKKKFKKFKKKKKKKKKKKKKFFKKKFKKKKKKKKKK7KK,,FAFAF7??>9==>=><===>===>=<==>>==?>=>>>>>>>>==>>>=>>>=>>>==>>>>>>>==>>=>>=>:=>>>=>>9>9>?>88)=?>??>?????=@>??@>?@?@>?,>/)>@8:9<5;/=-=/,>/*9>::== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKFKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKAKKKFFKKAKKKKK7AFKKKKKKKK,FFFKKKKKKKK>>?>=>>>>?>?>?>;>>>=<=>=?>=>=:=3>7>>=>>>>4??=?@?:???;6<@????>??=6=:9??::8==?8>???<)/)0:?@9?>>A;=>-:9<(@;849 MC:Z:151M MD:Z:1A147T1 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:2 MQ:i:60 OQ:Z:A,AFAFF@>=>>=>======>=<======>=<===>====><===<>>==>>>>=>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>;=<>>>>>>>>>>9>>>=>>>>>>?>>??>??>???8??7>????@?>??>??>@?:@@?@@?>=;:? MC:Z:151M MD:Z:3C147 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?<>??>>>>>>>??;>>>>=?>?=====>>>>>>====>>>>>>>>==>?>>>>?>>>>>>>>>>>>>?>>>>>9>>>>>>?>>>>>>>>>>>>>>><>>>>?>>>@??@?@??@??;?????@??????;=?7;=???A@@@@>><:;< MC:Z:151M MD:Z:15G135 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKFFAK7>??=>>>====>=<======>=<===>====><===<===<=====>>>>>>>>=>>=>>=>>>>>>>>>>>8>>><<:>>>>>>>>>>>>>>=>>>>>>?>>>>=>>>???>?>???@9<4?4?@@@@@:>;;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKAFKKKKKKKKKKAFFKKFF7<7F7FFKKKF7AFKAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:2212:21004:54295 147 3 17077269 60 25S126M = 17077107 -288 CATGGTGCCGTCCAGTCTCTACTATGAGTTGAGGTGCCTAGAACGCTTAACAATAGTGTACAGGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAA #################@;@.).=@@A@@=<0?@?@=6-?8-9,???>:.0,-90/?7>;8>*<:;.???@????>???>><>>>>>:>>7>>>>><>>9>>>>=<>>2.>>>>>>>?;>>>>>6==>>>>>>>>>>=>>,->>??<>=:; MC:Z:151M MD:Z:18A11T1T4T88 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:4 MQ:i:60 OQ:Z:#################FAA,,,@>?>?>>>>>><=<======>=<===>====><===<===<==>=<>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>??@????????@?>?????>?>@????@@@@?A@>>=;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:1:2119:11150:46929 83 3 17077271 60 151M = 17076974 -448 GTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGTCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCG 7;:;?==?(2>=?7??@???@?????@=>??@???????????@>>>>>>>>>>>>>>>>>>>>>>>>>>?>9>>>>>>>>>>>>>>>2>?>>>>>>>>>?>>>>>>>>>>>>====>>>>>===>=>>>>>??>=>>>>>>?>>???=5> MC:Z:151M MD:Z:88G62 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AFKFKFFA,7FAA@?@=.<8@?@@A@@?72(>0>>=>)?@????>???>???>>>>???>??>????==9=>=>;>=;=>8><>==>=>=>=>=>;>>=0=>>>>=/7?>>>>=>>=>>=?>>=>==<=>====<==<=<>=<=======>==???<7= MC:Z:137M1I13M MD:Z:22A128 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:A,FKKKKKA,<<<==?>>>>?><======>=<===>====><===<===<====<===>====<>=<===>>>>;>>>>:>9>>>>:9>>;>:>>>>>>>;>=>>>>>>?=>>>=<>=>>=<>?>??@?>??6??>??@>=9;@@/@AA@?@?=<6:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAAFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKAFKKFKAKKKKKKKFKKKKKKKKKFKKKKFKKKKFFKKAFKFKKKKKKK7AFKKFKF<?;1>=@2>6?:0@@:-9=7>,?<,9-8,;)6?>:489&;&9?8.>>>>;<9(>;<><'>6<%4?>2<198=;>>5>7=/=5'/496;6'4=>:86>>;;>>=;<:><=>>>>=>?==7>===<=6??;><9;>>>;>= MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:A,,7KKA7FAA7A7AA7KF<,AA7F,FA,<,A,A,7KF<<<7,A(AKA7KKKKFFA,KFFFF,KAF(>>?>>>?=<======>=<===>====><===<===<====<====>>>>=>>=>>=>>>>>>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>>>@????????@?>??>??=?=@?????@@@@A@?@@?>7;<@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKK@A@@@@A@A@A;?????????@???????????@???@????@?>>>=>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>>>>>>>>>?>>>?>>?>?>>>=>>>>>>>?>>>?==>>?>??>=>?>>>>?>>>>?>9?>?>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:KAKKKKKFKKKKKKFKAKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2114:28422:55930 163 3 17077279 60 151M = 17077474 346 GCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAA =;;?=?=======>=<===>====><===<===<>>>>=>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>>=><>>>>>>>>>>>>>=>>>>>?@????>??>?>?@????????=?>?????>??@@@?@@@@@@A@?@@A?;@@@><99; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFFKKKKKKFKKFKKKFKKFFKKKKKKKKFKKKKKKKFA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2113:21552:53908 83 3 17077279 60 151M = 17077098 -332 GCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAA #>;2@8@@=@@?A?????=>*??@????>>?=>?=>>>???>>>>=;>>=>>=>><4>>>=>=>9>>>==>>>;:=>=>>>>><>=>>>>>>?>><>=>>=>>=>>><===<=>=<<=<==<=<>=<=======>=<==>>9>>>?<>>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:#AF7A=?>>=====>=<===>====><===<===<;>>>9;=;;8;>>=>;5>><;>=>>>>>>=<6;<><;;>>>=8>/>>>>><>=<<>>>>@????>?>>???@>?=9/=><@>>=?>?@@?@?@A@?@=@A:?@@7@;::9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAFAAAAFKKKKFAKKFFKFKKKKKKFFFAFKAFFKKKF7F,FKKKKFKKFFKKKKKKKKKKKFKKKKKFKF7,AF===>?>>>?>?>>>>>?>>>>?>=======>>=>>>>>===>?>>>>>>>>>>>>>?>>>>=9>>>>>>?>>>>>>>>>>>>>>>>>>>>?>>>?>>?>?>??????????@?????>?=?=>????@???@A@@@@@?;@@?@><<:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKFFKKKKKKKKKKKKKKKKKKFFKFFKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2118:27630:55825 147 3 17077281 60 151M = 17077067 -365 CTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGT ?:@82:@@@@;@1@@>8??=*>=>?7>>?<>???>>??=????:4>>=??>9>>>==>>>=>=>;>:,=>;>>>>><=9'=;8<6>>=>>=7>>=>>>=>?>>>>==;<=<>=<=======>=<====8=====>??>8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KA<<,7KKKKAA,KK<>?>?>>>>><>>>=>====>>=>>=>9>>>?>>;;?>>>>>>>>>>=>>?>>=8;9>>58<;?9>>>>>>>>>>>>6<>>>>>?>>>?<>?>???@>?????;>?>???=??=1-=:>>==????>?@@@=><39> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAAFFAKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKFFKKKKKKKKKKKFKKKKKFAFKKK<>=<=<;83&>>=7$&$$$$$$0$2$$%&%)/4--/'*.><%;)=2/&>>)//(/%<$2/>123- MC:Z:151M MD:Z:12T1T5A15T3A7C4A22 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:7 MQ:i:60 OQ:Z:############################################################################A(A(FA7KAFKKKAKAF7<,KFFF(,((((((,(<((,,,,,A,,,,7,KF,<,F7,,FF,,7,,,A,7,A,,,, UQ:i:19 AS:i:41 +HTL2KCCXX160412:6:1108:14286:24690 99 3 17077290 60 151M = 17077346 207 TTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTAC ?>>?>?>===><===<===<====<========<==<==<=====>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>>>?>>>>>>>>?>=>>>>?>??@?????????@?>????:??????@@@@@?@?>;;;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2115:15016:15971 163 3 17077291 60 151M = 17077479 339 TAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACCGGTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACA =:8<=?>889>=><===<==<<===.7;========>>=>>=>=;<>=;<>>>7>>>>=;>>>>>>>>>>>>>>=>>>>>>?>>=>=<>==>?@???8>?==>???????;@@79@88<:=@@@@@?@@@=<;7? MC:Z:151M MD:Z:105A1T43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AA>???>>>==>=<>==<====<====8<=>=>>=>>=>>>>>>>=>>>9>>=>=>>>>>>>>;=>>>=>=>>>>??@????>??>???@????????=<28:<>?.=><@@??@??@@-@)>.<78@?A@@??/6;@=AAA4B####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKAFKFKFFKKKFFFKKKKKKKKKKKKKKKKKKFKKKA<<7<>?>>>>>>>>>>>?>>>?>>>>?>>>>>>>=>>>>>?>>>=>$<<<==>?>>>?>?????@???????>?@???@??@?@=??????????@???>=?@@>=@A@@@A@@@@A@@@@??9@@=?@=AA?>@AB@?AA=6><4>; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKFK(FFFFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKFFKKKKKKFKFKKFAFKFFAFKKKKKKKKKKKKKKFFFKK>>@@>?@@<@?;@@?6;(>=>?@?<>/>??????4?=?:>?;?@?=??>>?=>>>?>9><.>>>?>>>>>>>>>;?>>>>>>>>>?>=>>>=8==>=>>>>>>><>>><>>==>>>>>=??>=<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:77A77<,F>?7@????>;@????8<<>??=??????>?:>>>==>>>=>=>=>>>>><=>=>>>>>?>><>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>========>=<====8====<<===<=<===<=>=====>>=>???>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:??>??>???????=<=?:<>>==>>>=>=>=>>>>>>>>>>>>>>?>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?==>>=>>==>=<====8====<<===<=<===<=>====>>>=>>?>=>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:?=???=>:>==========<==<==<===========8===<<>>=>>>>>=>>>>>>=>>>>>>;>=>>=>==>>>?>>>>>>=>?>=>>>=>=>=<>>>>>>>>>?>>????:?<=>;=:7=>?>???>?@>??=@@@??@@??97<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKFKKKKKKKKKKKKKFKFKKKKFKKKKKKKKKFFFKKKKKKKAKKKFFKKKKKKKKKKKKKKKKKKFAF?>==<========<==<==<=========>>9>>><<>>>>><>>>>>>>>>=>>>>>>?>>>>=>>=>>>?>>>>>>>>?>=>>>>?>??@?????????@?>????:?????>????@>@@@?@A?@@?@@@?A@@@A@?<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKFFKKKKKKFK UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:1222:28757:53522 83 3 17077308 60 151M = 17077115 -344 ATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGG ><:;>?A?@?A@>@@AA@5@>>@?>?@@?@??>>?7??????@??>???????@????>>>>?@>>>?>>?>?>>?=>>??>>??>>>?>?>>?>??>>>??????>>>>?>8>>>>>>>>?>?>?>>=??>>>>???>?????>@???=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:4:=7=>><5:*.5<=<-6<>?>99->=9<0>-9+:=: MC:Z:151M MD:Z:5T11A4A10G19A3A2T13T10A29T3 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:10 MQ:i:60 OQ:Z:#############################################################################################################AFF,F7?:???>>???>?>?>??????????????@?>>>=>>=>>=?>>=>>>=>?><>>=>>=>=?>:>>>>>>>?>=>>>>9>>>>==>>>==<===<=>=======<====>=>=>==<>>><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKFFKKKKFA,7FKFKKKFKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:2:1204:14966:57688 99 3 17077315 60 151M = 17077405 241 GTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTGTTTATCCAGCGCATTGCAAGTTCTTTCTACAACTTTCTTTTCTATAGGGTTTTTT >>==@*==>?>>>>>>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>>>>>>>>>+,9>?>>?>?>>?>>>>>>>>?>>>?>>>>>>?9>>>=)6>>@>?)>@?:???5('??@@????@??@A?@@)AA@AA@@?><:9? MC:Z:151M MD:Z:95T6A7G0T25A13 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:5 MQ:i:60 OQ:Z:AAFFF,FFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,,AKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKA,7FFKKK,FKKKKKK7,,AKKKKKKKKKKKKKKKKKKKKFKK,FKKKKKKKKKKKK UQ:i:66 AS:i:126 +HK35MCCXX160204:2:2204:6228:72016 147 3 17077316 60 151M = 17077024 -443 TCCTGGCCTCCCACATCATGCCTGCAGCGGTGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCGGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTC ##################?<8*=(*A@9;(.0=77.'.4.8?2>@@96:>?><<6,:=>5./9.2*?@>>'6?.7/@>=8?5;;(;1??->=<9>>>;<;>>?377>>>;;<>;5>;==9>8+==>4<5;>>;>>>+<7?>>10< MC:Z:151M MD:Z:9T20G34T85 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:3 MQ:i:60 OQ:Z:##################AA<,<,,FKFA,,7<<<,,,<,AF7FKFA<=6,;6>=<>==;>><>>219;=7/486:>:7>>;>=>3>;9;==:==>>>?9>?>?>>8,<=48??>==;>=>????3=-;:77=@:;8=-7=;8A@74A############################## MC:Z:151M MD:Z:134A13C2 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAFFAFFKFA,F======<========>==8>>=><>>>>>>>>>>>>><,:>>7==>?>>>>=>>=>>>1=>==;=<>;<9>=<2=;==>==??????<<99>=;?8;.>>>>?8???>@??>@84?:8@9@>@=@?)A=A?55>@AAA?@<#### MC:Z:151M MD:Z:132A18 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:<=??===<==<====(;=====8====;====>>>>>>>>>>>=>>><9>?>>>>=>>=>>>?>>>';=>;>>>>>=>><*248;>>?,3==????:?????>?????>???>?@>?;;?>@??*2@A@>>>@@-@1>=@.*+69= MC:Z:151M MD:Z:17C50T17T6T35T15T5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKK,>;==?@@?@?@?>????????6???>>???>?>?>?????>>>>>>>>>?>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>><=>==<=<===<=>=======<====>=>=>===<>>>>>=???>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FAKKKKKKKKFKAFKKKKKKKKAKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2122:16305:67076 147 3 17077323 60 151M = 17076863 -611 CTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTA ?:9=?>@@:?0*8-@@?;@?7;%>/>?>?>>>?>?4???:=>=>???>@???>:?==??=?>>=>>>:2?>=>:=>>=<=?>=>>>>>>;?:3>>>>78>>8:=>>>=>==>>=>?>==:===<====>=>=<;==<=====4>>7>?=:= MC:Z:53M1I97M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FFFAF=<=25>=<>>>8======8=8<16&==========1===<===>>=?>>>==>>=>>>?=><=>=>>?>=>=<>>=>=;>>>>>>>>>?>=>>>18>5=>>=>>>>==>0>=?@5??6>006190>@>=?@???>??9?@<;>@?>=### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFF<8??=;>>>>?>>>?>8==><<>?>>>>>>>>>>9=>>>8>>>>?><>?>>==?=>;>>>>>0;=?6'>>>;6=90:?9>>>;>>>>@>:(<>0=?>.59>1/>>6?@6?=2@???@=?>>>====8==<<0:<7.97.6=9====>:/29;:/.386<=>+7>?7=;>>>7>8.2;=>>2/9=><<=>?><=>4;.5>.::????.?*3/...@@?@@@>>?######## MC:Z:151M MD:Z:69T44T29T6 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKF,FF??@?@@@?:??=>>???>?>?>???????=>>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>>==>>>=>=>=>==>=======<====>=>=>===<=====<===>>>?>???>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:#AKFKKAKKKKKFKKKFKKKKKKKKKKKKKKKKKFFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2119:14489:32144 83 3 17077332 60 151M = 17076973 -510 CATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCG ?;;=>?@@=@@;@??>>???>?>?>??????????????@?>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>>==>>>=>=>>><>?=======<====>=>=>===<=====<=====>?>?>>?>==8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1117:20182:10046 163 3 17077333 60 151M = 17077732 550 ATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGT ==>>=?>====8===;<=>==><==>>==>>>=>>>>>5?>>><=>>=>:>=>>>>>>>>;>=>>8>6>>/;>7>>???:>@>>=???:????9>?>?>?>>??><=>@07??@??>?A@>@@?>5?@=9=;6<33=??;1@@0;13< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKAKKKKKKAKKKKKKFKKKKKKKF7KKKKAFKKKFAKFKFKKKKKKAKKKK7F87==:@@>@@@A@@@@@@@@??@?????>???@???@??@?@??@????????@??>?>>>>?>??>>>?>>>>?>>>>?>9>>>=>>=>?>>>?>>>??>>>>?>==>=>>?>?=>?>>;>=====>>>>>??>?>>>>>>9>@A<>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:F>==>?=>>>=>>==>>>=>;>>>>>?>=>>>=>=>>>>>>>>>?>=>>>>9>>>>?>?????>???>?@>>?>???>????@?@?@?@@?@@@@@>@;@@>@=@>A@@?5<;<9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:=========8=09=4;,7%;;==>=====>>=>>>?>><<=;>>7>=>>>>>)=>>>9==>>?>=>=>>9>9>>>=>>>>>=>??>?@>??>>??>????@?@?@???>>????>??@@@AA@A@@@@@@:>;<@?@>;:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKAK7AF>>91@>>===6==<==>>;=>==:(>';9>=>>>5/==>@(7.(/8==>=>=>=><>:=?>>><=<2);<><><5;02)=:62:*2,-+,<5=;0><=2=888589+9>>??=?/ MC:Z:151M MD:Z:13G65C62G8 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:##################################AFKFA7:=7==>=>;>>)<>>><>>>>?>>>?>>9>.16(=8=8>(<>6;;>?++1&8'<69==?>;>>+95>>=9#8>>='<><):+=9+>=<9;<-;9=;2/+8>@<>>>68?6+995<))9=??####################### MC:Z:4S147M MD:Z:40A16A1T22T47T7G4G0G6 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:8 MQ:i:60 OQ:Z:=?>>>>>>=======<======>====<==<===>=====>>=?>=>><>>=>>;>>>>>>>>>?>=>>>>8>>>>>=>>>>>=>>>=>?=>>=>>>=>>>><>?>@?????????>??????@?@??????:?A@@@??@@:>;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:,AFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF@?A@A@A?A@>@@@@@@??@@?@@@?@@?@@?A??>???>?@????>??>?>@?>???????@?>????:>?>>==>>>=>=>>>=>?>>>>>>>=>>>>?>?>?>>>=>>>>>=>===>>>=>>==>==8<>=<==<=>>??;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:KKFKKKKKKKKKFKKFFKKKFKKKKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1124:12591:16692 99 3 17077349 60 151M = 17077384 186 CCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGAAGATGTGGTA ><>>>?>>>>>>>>>>>>>>=>7>>>>>==>=?>>?>>;>=>>>?>=>>;>>=>>=>>>>?>>;>?>>>>=>9>>>>=>>>>>>>>>>>??>>>>?>98?>>?@?@?@9?>?<6999<<0=:=.6,;2=4>,:@@=@?6<>>=;:9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKK<>@@?@?B??AAA>@?@<8@@@?@@@@@@@@@@@@@@@A?@?:???>???????>>>>>>?>>>>>>=>>>>>?>?>??>>>>>>>>>>>>==>?>?>>>>==8=>?>>=>=?>>>??=:>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:FFFKFF>??>>>>=====<======>====<==<===>==========<==7==<=9=>>>>>>>>>?>=>>=>9>>>>==>>>>>=>>>=>?=>>=>>>=>>>>?>?>?>>>:>????>??????=?@/?=;@?:/.8>@?>@:?@@?><;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKK7FFAF4;<@7<=2*@<998>/(??@?@<.5@9>=@@='@@@=>@@?@@???@???;@????@?:?=??>@???@?>?=?>>>>?>>=?>>>?>>>??>>>>:>>=:>>>>>??>?>>>>>>9>??>>>>>?>>>>>>>@@<=:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:<7A,<7AA<=<;?<>2=1:>*'=;5/*2*=><=6-0>>4=5/>===>>7>=8>><=?>==:'':=4><<<)?>?=;;=>6>>=6*5====>=>======8:;;:=;:(=<==<=7=<>=>?>?>?> MC:Z:151M MD:Z:2G4A15C22T4C35T7A36A18 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:8 MQ:i:60 OQ:Z:##############################AFKKFF?@@@>@?@??@@===@??>???>?@????>??=?>>>=>>>>>>>?>=>>>>9>>>>==>>>=>=>>>=>?>>>>>>>=>>>>?>?>?>>>=>>>>>=======>=>======8<>=<==<==<==<==<>=<==<>>>>>??;?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKFF(7:3773=4,5<=%,;=9+?9&6(5>0><,5<957<8=8:999>,577=>5(9=):==>=@?+5<>;-<3?>)2?58;;->>;81=-(/,+:377*98A?-)=-,+9(2->?8;;..9?@3(5##################### MC:Z:151M MD:Z:20T40A17T14T13A19T8 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:6 MQ:i:60 OQ:Z:A,<<>??@>===<=;<===>>==>===>?=<=>>>>=>>?>>>>>>>>>?>=>>>>9>>>>>=>>>>>=>>>=>?=?>>???>????@?@???>>>?????>??????@>@?@@=@@69@@?@@?@@@@??@@@A@@<@AAAAAAA@??;79? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFKKKKKKKKKKKKKAFKFF=>>>>>>>>==============<>===>>?>?>==>>>>>>>?>>>>>?>>>>=>>>>>>==>=>?>>>>>??>>>>>>?>>>:<>>>>>>>>>>?>??@@????@??;=???>=???>??????@?@@AA@@4=@?<=<:5= MC:Z:151M MD:Z:53G97 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKFKFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKAFFKKFAFKKFFFFKKKKKKKKKKK7AFA:>,????=2???>:?>.@:@>>>>??=9+?@>>>>>>5;;<>>><%>>>>>>??>>>=>??>>>>>>?>>>>>>9:>><=>>=>569?=:=<;7+>>>?>>>>>==>>>?>>>>>>>??>>?>?>>.>??>>=/ MC:Z:151M MD:Z:11A39G10T88 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:3 MQ:i:60 OQ:Z:AF<,77A7A77(KFKFF8A>77:<@@@=?=='.916-7=>=&8.2,=?):6>>;>??>>,;,=::>1><8>>>>>;>>?==:=8;<7>>>9=>>>>=<>>>?>>>=>97>?>>?>>>>>>>?=?=@< MC:Z:151M MD:Z:16A21T9T1G4T20T74 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:6 MQ:i:60 OQ:Z:#A,A,<,7<77FA,,,,F<<<,7<??9@>(616<70=;/??@?=?=??????>9????>8>=09<<=;??>9/=<7';(>>;>>>9.>?>;=8?>5<6,>>:>>>>=>>>>>=>?=>>>>>>=?>>?=?>>>>>>>???;<=< MC:Z:151M MD:Z:11A10A24G103 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:####FAFAFAA,F<<,7<,A,F;=?>==>===<=<>===<==<==>==>?=>>>>>>>>>=>>>>>>>?>>>>>>>>>>>=>>=>?>>>===?>>>>>=>>>?>=>????>???>@>?>?@>???@???>???=>@@@@@@@@>>@@@?@A??@??:>:AA:A@>=8:=# MC:Z:151M MD:Z:46G104 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKFKKKKKKKKK;<=>=>=><====<==<=<====><=========<=====>>>>>>>>>>>>>><>>=>?>>>>=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>8=<>>?>>>=>>??>??????@?>????>?@>???@????@@?@?@@<><;;= MC:Z:151M MD:Z:43G107 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1117:27235:56299 1123 4 57194286 60 151M = 57194316 181 CCCACCCACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATA >;<=>=>=><====<==<=<====><=========<=====>>>>>>>>>>>>>>=>>=>?>>>>=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>?=>>>?>>>=>>??>??????@?>????>?@>???@????@@?@/>@?><;;9 MC:Z:151M MD:Z:43G107 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AKFKKKKA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1117:21704:36979 163 4 57194292 60 151M = 57194387 246 CACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGC =;:=<=========<=>>>>>>?>>>>>>>>>>>=>>=>?>>>6=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>@>???@???>????>??????@?>????>?@>??@A@@@@@@?@@@@?A?@@A@=<88: MC:Z:151M MD:Z:37G113 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2217:7953:49654 83 4 57194293 60 151M = 57193393 -1051 ACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCT ><<=1;@@??@@?@>???<0>5???=>??>=<<;???>@??>>=>=>>=>=>>=>?>>>>>>?>=7>>=>>>>==>>>>>>>>>>?>>=>?<>>>?>>==>>>><>>=<==>=<====<=>===<>====<=<====<==>>?>=?=?=?> MC:Z:151M MD:Z:36G114 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:7F3??>9/837-2>@<>@8@6@@:0@?????9;>?>?7;5(-7;;->??>=>>=*:+??=>>?>?=='=>?>>>>=>>>>>>>>;>?>=/=+:>==,>?;5>=>>>>>>>7>=>>7>?7>>?0><=- MC:Z:151M MD:Z:25G9G115 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:2 MQ:i:60 OQ:Z:##################FA7AA<7,<77,7FFFAFAF7FFA7KKKKFFA?8?@=@9@@@@@@?=????????@@?????@@??????@??>??????????>?@?@?@@??>??>>>>?>>>=>>>>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>???>??>>?@=<<< MC:Z:151M MD:Z:6A21G122 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:2 MQ:i:60 OQ:Z:########FFKKKKKFFKA<<@7@@@??@;9,,<@?@@@=@,7@:???????>:?>?@??>?>?>99???>?????>???>>?>+>>>=>=>=>>>>?>>>=<>>>>>>>>>>?>=>>>>=>?>>;>?>>>>>>>>>?>>><>>?><>?>>>?>>>@>==>< MC:Z:151M MD:Z:27G123 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:A<,<,7A7FFA7FKKAAKA<,,AKKKKKFF,7KAKKKKKKKF87.@1@@>?==91=@:>-;<>?>?=?=>5>9@?>???>?=?<><=,;>>>><>>;=>=><==4;?>>==>>>;=<=>=>>?>=>><>=>;68&=?>=>>=>=====;=<==>=<=>===;==<=====<>>?>=>= MC:Z:151M MD:Z:2G17G86A43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:#####AKKFF<7,A,KKFFAFA7><>>=>=8;=9<>=.====2,<=96=6;==><=>9=>=>>>>;>>>>>=>=>>>==>=>=1<8>:1>:9;<=00=<388<<>>>>,>0(=><=>;8=:/,.=1);8=..)(..(8.=?:???=>@@@@4:@/9?=9######### MC:Z:151M MD:Z:15G134T0 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:AAA,57<;89-.<=??@AABAA@;@@@@@@@@@@@AA@@@@?A=@?@@@?@;=8@;??????>??@?????????>??;>?>>>??>>?>?>>>>>>>>>>>>>>>>=>>???>??>>>?>>>?>>>>>>>>?;?9=< MC:Z:151M MD:Z:14G136 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:KKKFA<<,,AAAAFKKKKKFAKKKKKKKKFKKKKKKKKFKAKFKKKFKAKFKKKKKFFKKFFFFAF7KAKKKFFKFKKKKKKKKKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFF>??<:4//.>>=>>>>=:->>>8?><=>>><>>;>=>><>>>;>=>>><<6>=>>><>?>>>>>:-<>===>>8).>?8;=<6 MC:Z:151M MD:Z:11T2G15T10A103A3 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:#######################AAAKAA<,,,<<,,,7@?@@?@@@@??>??>?@??????@?????>????>>???????>>>?>>=>?>>>>?>>==>>>>=>>>=>>?>=>>>>=>?>>>=?>>>>=>=>>>>=>===>=<=>===>========<=======>?>?<>= MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKKF@>?@@A@?@?>@@@@??>?>?>?@??????@?????>????>>???????>>>?>>=>?>>>>?>>==>>>>=>>>=>>?>=>>>>=>?<>==?>>>>=>=>>>>=>===>=<=>===>========<=======>?>?<>= MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KFKKKF>@@???@=8>@**(*9@@>:2<8>@:?=??>=9;7;>?=*;>?????=?=<)?>>==0<>>>8>;===::))>=89>;7>=>=9<8=?>>=5?>>;;:)=7==75>=>7>=<<40==:==;=======>:*><:>= MC:Z:151M MD:Z:12G138 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:###F<<=?;@AA@@?@@@=@@?@@@@@@?=@@>?::@?>>?<>????>>>>>>>>>>=>>=>>>;0>>>>>>?>>>>>>>>>>>>>=>=>=<>>>>>?>>>=>>>=>===>>>>>>>?><:; MC:Z:151M MD:Z:12G138 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AKKF<,FF@AAAAAAB?@AAAA@@@@@@?@@>??@@@@@A@@@@?>?????>??????????@>>>?@????@???>>?>>>>>>>>>?>=>>>>>>?>>>>?>>>>>>>>>>>>>=>>>=<=?=>>?>>>>=>>>=>===>>>>>=??==<; MC:Z:151M MD:Z:11G139 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:FFKF<?>>:>>?>>>>=>>>>>><,>=?>>>><4?5,,;;>>?>>/=>77>>>>>>>>?>????????<8>?1=;?;<=*;>>9;73<:=<;?>??>############################################ MC:Z:5S146M MD:Z:10G117A12A9 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:<<=>>>>>>>>=>===========<==<=>====<=>=====<>>=>>=>>>>>=>>>>?=>=>?=>>>;>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>??>?>??@?>?@???@>???????>?>??@@@?@??==;;> MC:Z:151M MD:Z:10G140 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2112:23967:16428 1123 4 57194321 60 151M = 57194450 280 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAAT ><=<=?>>>>>?===========<==<=>====<=>=====<==>>==>>>>>=>>>>?=>=>?=>>>?>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>>>>?>??@?>?@???@????????>?>?>?@;@@>@??>=:;? MC:Z:151M MD:Z:8G130A11 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:24403:16234 99 4 57194321 60 151M = 57194450 280 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAAT ><=<=?>>>>>?===========<==<=>====<=>=====<==>>==>>>>>=>>>>?=>=>?=>>>?>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>>>>?>??@?>?@???@????????>?>?>?@;@@>@??>=:;? MC:Z:151M MD:Z:8G130A11 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:84 AS:i:141 +HK3T5CCXX160204:2:2103:16863:31336 99 4 57194328 60 151M = 57194901 724 TTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGA >>=>8?>>>>>>>>>>>>>>??>>>>>??>>>>>>?>>>>>>>>>>>>>>>?>?>??>>>>?>>>>?>>>>>>>>>>?>>>?>>>??=>?>?>>>?>>>?=@?>????@??@@@?@;???????@???????@@??A@@A@@@@@?=79## MC:Z:151M MD:Z:1G149 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFF@<).();7>56-6=5)..6?@:6?7.(5-)998,.:,-9.95-<8>5:.'.9.<*=69>'7:;6./(-->8(588&++6=1&>1+9=>=>78,5,'9+./=++(,<7===(=,8;;>9>=48>><;)>>>>>?>?>@;>> MC:Z:136M15S MD:Z:5G6G0A1T9A0A13A34T6T2A20T10G11A21 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:13 MQ:i:60 OQ:Z:######FFKFAF<,,,,<7A<<,1/*(=>:97>8*2;==:*2=;-8?>=8==2:'&(48=55/(.*53<>>;:>:<1:*;/=7;=968(<;>:;;'>7=;5'<18).=>=?7<=?=8+8;8=><==1<=<-/)=<=<<=<5;*=0><=>>;9:?):>@> MD:Z:46A1T38A5A30C26 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:5 OQ:Z:####A7>>?@?>>>>>>??>>>>>???>>>>>?>>>>>>>???>>>>>?>?>??>>>>?>>>>?>>>>?>>>>>?>>>?>>>??>>?>??>>>>>>@?@??????@??@@@?@@@@@@??@@?@?????:???@?@A@@A@@@@A@@@A@@?<:9? MC:Z:151M MD:Z:124A26 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HK3T5CCXX160204:3:2223:10531:44802 147 4 57194337 60 151M = 57193980 -508 TTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGG ><9<>?<:>>B@A?3<99?=@@@@@A>@>@@:;@=@=???@?=@?@@>???@????@??????????@???@????@?=@?@>??>>>>>>?>>>>>>?>>???>?>=>>?>>>?>>>>>>>>>>>?>>?>>>>>>>?>>>?>?>???;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:FAF??>>?=>=><=?=====<=====<===>>=>>>>?=>=>?=>>>?>>>=?>=>=>>>>>>?>8>>>>=>?=?>?@??????>????<>>??@?>?@?8;>?>??????>?>@>:@@@?;@7;A@?@@@@@@?A@??B?A/5>?=>;-= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKFKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKAFKKKKFKKKKA7AKAFKKKKKKKKKKAKFKAAA<>>????>>>>>??>>>>>>?>>>>>>>>>>>>>>>?>?>??>>>>?>>>>?>>>>>>>>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>?>@?@@???@???@???????:???@??@?????@@A@@@A@A@@@@@?><98> MC:Z:151M MD:Z:118A32 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1219:20466:25552 163 4 57194345 60 151M = 57194474 280 TTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAA 9>==<=>=====<=====<=====<====?=>=>?=>>>?>>>=>>>>=>>>>>>7>=>>>>=>?=>>>?=>>>>><>>>>=>=>>??>?@???@????????>?>?>09=?=>?>???9?@@@@@@@?@@8?@@?@@?@@=<98> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<?@@@AA@@@@@@A@@@????????????@?@?@@????@????@???????>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>???>??>>>?>>>?>>>>>>>9>>>?>>?>==>>>>?>>>?>?>>>>>>>>>?>>=>> MC:Z:151M MD:Z:115A35 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:1219:7405:39423 99 4 57194347 60 151M = 57194615 419 CTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGG ?@>???>>>?>=====================>====?=>==>>>=======>>>>>>?>>>>>>>>?>>=>?>>>>>>=>>>>=>>>>?>>>?>>>?<>>>>>>>=?????????>?????>????????>??=>?@@@@?@@@@?A@@@@@@@A@@@@@@?????????@?@?@@????@????@?????>????@>>>?>>>??>>?>?>>>>>>>>>?>>>>>=?>=???>??>>>?>>>?>>>====9>>>?>=?>>>>===>=>>?>?>>>>>>>>>>>>?@@<<> MC:Z:151M MD:Z:112A38 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:2123:5325:20067 83 4 57194357 60 151M = 57194062 -446 ATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGG ?::<=?@@@?@@@@@@@?@??@>?>?@????@>?>>????>???>>>?>=>>>>=>?>>>=?>>>>=>=>>>>=>=>>?>=>?>>>?>>>>>>>>=>>>;>>9=>=><===<======<=<=<>======<=====>==>=>>>>???>:> MC:Z:151M MD:Z:103A47 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AKFKKKKKKKFKKKFKKKFKKFFKKFKKKKKKAFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>??>>>>>===>=>>>=?>>>>?>=>=>==>>>>>>=>>>>>>?>>>>>>>>?>>>>?=>>>>>=>>>>=?>??@???@???@???????????????:?>????@@?@@@@?@???@>A@@A@@@?AAAA@?AA@AAA1A@:<86? MC:Z:151M MD:Z:102A48 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKFAKKKKKKKKKKKAFFKKKAKKKFKKFKFKKKKKKKF=======;===>><><=>=>==>>>>=>>5==>>>>>>>>=>>>>=>>=>*=?>.>*<>08<>*0>=>>)=(=.6=>>/;/*????0/5>??>>>>>>===>=>?>=>>?>>>>>>====>=>=>>>>>>?>>>>>>>>?>>>>?>>>>>>=>>>>=>>>??????:?????????@@@@@@@@@+.@@?@@=@AA?2A>AAA?@AAAAAA@@>;86= MC:Z:151M MD:Z:99A51 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKFKKKKFF,,AFAAKAFFF<7;<>>>>?<=<=><===>===<====<======>=<=====>>=>>>?>>>>>>=>>>>=>=>>?>=>?>>>?>>>>>>>>=>=>=>74===>=>>>:>>>>>>>>>??@????>?**>1=>=???>?>=>><@@6;8::>?+7=;> MC:Z:151M MD:Z:92A58 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAAAKKKKFFAKKKKKKKKKKKKKKKKFK,,A7FKFKKKKKKFAAAFK7A8:6+;/>8<9+*),-/51&'/.&<;456=>8=8=>7'>;;?><;6//>>>>>=5;:><>>75))46=;)==>5>8<:)4<<>==;=#=;==<9.=<;;<==<=357;:6<= MC:Z:151M MD:Z:20T3T9T3T2T3T7T38A24G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:9 MQ:i:60 OQ:Z:##################################A<7,AA7A<,A7FAA<,,,,,,7,,,,,,FF<<7AKAF7KF7,KFAKKFAA,,KKKKKF<>??@=>=>?;===>===<====<<=====>=<====<=0&;<05<>>>>>=>>>>=>=9=?>=>?>>>?<>>>=>>>=>=>=*;>>>=>=>>>=>>>>>>>>7>=?>>????>??><>????>?>???>?>?@@<8=@@?>=;:A MC:Z:151M MD:Z:84C66 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKFKKKKKKKKKKFKFFKKKKKKKKKFKKKK7,FA,>8=<2/9+???>???.?28>7=?1:3?@=>=9-=,)<=<6>>><=>=>><==><;=;8>>>>:.0>==<>>>>>>:<4<>;><=>==:;===;8=<=;<====28<=<==<<=928=====>=7<64:??>@> MC:Z:151M MD:Z:7T36T76A29 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:###########AA7F<77<,KKKKKFK7K7AF@::07??=>*.:(:>:>>?>6>9@>?>3=>=>>>>=><<=?>=>>==>?<<.;>>>>>:>>/<<>=:><=<>>>>>=>=>;>==965;<>==>=>===<==>><<=;==><==>9>>.0<>>>=??5?= MC:Z:151M MD:Z:148C2 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:####KF:?=<8=>??:7?????>??>>???>??>>>?>>>?>>>>>>>>><>?>>?>>>>>>>?>>>?>?>>>>>>>>>>>>>>?>>>>>>>>?>>>>>>>>>>?>>>>>>>>>>??@;?> MC:Z:151M MD:Z:144C6 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:#FFAKAAA<7FAFFA:>>>?=>><>>>>=>?>>>?>>>??>>>>?>>>>>>=>>>>=>>>>?>>??>>??>>>>>>>>=>>>?>>9=?>@??@?>????????>?=@??????>?????????>??@<@@A?@@?@>=@@@@@@@@@?@A=>@@=;96> MC:Z:151M MD:Z:77A64C8 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKF>==?>+$-?@><=>?A@?=><>??@???>@??==7=>????>=>??@?>>8???@>>>>>>>>=><>>>>=>>=>=><>=>>>>>>=>=>=?>>9>7>=>>=>>>>>>=>>>>=<=======#=====<=======<=>==?>>:>= MC:Z:151M MD:Z:7T118C13C10 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:<:<>?@@@@=@@=???@????????@??@?@??????>>>@??????@??>??>>?>>>?>>>?>>=>;>>>>>>>>>>>>>>>>>?>>>?>?>>>>>>>>>>>>>>?>>>>>>>>>>=>>=>>======>>>>>>>>>??>>>??>>?= MC:Z:151M MD:Z:138C12 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:<@@?@?@@?>?>@?>????>?@???>@????>?>??>>=>=>>?>=>?>>>?>>>>>>>>=>>>>>>9=>=>=>>>=>>>>>>=>=>=?>>>>>>=>>==>>===<=====<==========<==<=======<>?>=>>?>?><> MC:Z:151M MD:Z:73A64C12 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:FKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HTL2KCCXX160412:5:2110:4371:23935 83 4 57194398 60 151M = 57194361 -188 AATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCA ?:;<>@@@?@@@@?<@???=@?????????????>??@?>?>?=>?>><>>>>>>>>>>>>9>>=>=>>>>>>>>>>>>>>>?>>>>>>>>>=>>>>>>>=====<>>===;=>===============>=====<====>>>>>>>>==? MC:Z:151M MD:Z:62A64C23 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:KKKKKFFKKKKKKKAFKKKFKKKKKKKKKKKKKKKKKKKKKFKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HK3T5CCXX160204:4:2117:5193:44345 163 4 57194399 60 118M33S = 57194676 401 ATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCGGTTCTCCTGAATGCCGTGAGTGATTGGGAATCACAAGGAACATTCCGGCACGCAACTCTGTCCATGTGAGTTGTCAGGATTCTTCGCCCC ,=<=???>>><>>>??;>?>?>>>8:<><>?=<<=>>?6==>43?>>;,=>>>?>>6>;>,1659?((.0;,,4=)0-(959)8-898=?9=-7################################################# MC:Z:27S124M MD:Z:60C0A13A6A23T5C5 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:6 MQ:i:60 OQ:Z:,AFFFKKKKKAFFKKKFKKKKKKKAAFFAFKFAAFKFK7FAF<=))>@>?@<7='A?=78/.)?>@>?=(>????7??@=>>=80>75>>?>>?>>>>>>>?>><<>?=>>>>8=>>>>>>>?>>>>>>>>?>>>>>>>>>>?>>>>>=>>>>>??>>>>>>>>>?>>>>>?>==>> MC:Z:143M8S MD:Z:23G37A64C24 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:7A,,77A<,,AFAFFA<<,KFA777,,AF>?>>>>=?>>>>>>>>>==>>>>>?>>?=>>?=>>>>>>>>=>>>>>>9>>>?>>?>>>>>>>>>???>@????????????????@?9?=???=??@?::9=;?@@@<@@>?@@@@@=0<<.?@@@?@@;A<<88# MC:Z:151M MD:Z:55A64C30 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKAFKKKAKFKKKFKKKK:7925-7:5.)@?>59:09=&.2<1>6?>>8(,>;?>=+,887;=78=1,1=4;6?>>>=>>9<>><5?>>>>>>;>>?;>>>>>>>=6=<9>???8:, MC:Z:102M49S MD:Z:6A2G34G72C33 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:4 MQ:i:60 OQ:Z:############A7A,7=;>>9?=7?;:.(?>=5;??@??>>>>=>=<>5=>>>>>>=>=>=?>=7>5>=>==>>><>>=>>>>>=>>>>><>>>>>=>==88====<=>=<===<===<=<===<======9><=>>??=7;> MC:Z:151M MD:Z:2T111C36 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:####FAFAAAAFFAFA7KF>@>>>>>>>>>?<>>>=>?>>???>??>>>?>>>?>>>>>>>9>>>?>>?>>>>=?>?=??@=@?>????:??@;@AA@>@@?@@@@).-@@<>@@@AAAB*??B@<;=996< MC:Z:151M MD:Z:46A64C39 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:AA?==>?>>>>=>===<=9;=>=<=8;==>========<=<=<;=9===>=>>>=>>>>>>>>=>>?>>>>==*<>=>=>>>>=>=>>>=>>>>>=4<>>=>>>>>>>1=>=?@?????>??=:???@@@?@@@><;;? MC:Z:36S37M78S MD:Z:109C41 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKAFKKKKKAAKKKKKKKKKKKKKKKKFKAFKKKKKKKKKKKKKKKKKKKKKKKKFF,FKFKKKKKKKKKKKKKKKKKKK@<>??>>>=>>==<=<==>=<=>===>========<=<=<===>><>=>>>=>>>>>>>>=>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>>>>>>>>>>>?@?????>???>?????>????>?>??>@@@@?@A?=;;;? MC:Z:151M MD:Z:108C42 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2118:25347:62593 83 4 57194419 60 151M = 57194155 -415 AATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAA A<;==??@?@@?@>??@>*==???@???>????>???????>==>=>>>=>><>>>=>=>=?>>>>>>=>>=>>>>>>=>>>>><>>>>>>>>>>>>>=>>>>>=>==>=<===<===<=<===<====<=<==<====>=?>>>???=@> MC:Z:151M MD:Z:106C44 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z::=:(.@7.:*/)?44.8;-)>;5=7-=::>:<>>?8?>?<<=9>:=<3./0/(+<=;92>6-(,>==>:=3%><7<<7>:>?>=<=<==<>=<=>>><=92==;<==<=>===<><82=4>=>29= MC:Z:151M MD:Z:10A2A1A23A37A26C46 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:6 MQ:i:60 OQ:Z:#################A7,A,AF<7AA,,A<,7,,,FA<,7A,,F<??==<==>=<=>===><=======<=<=<=>>>>=>=>===>>>>>>>==>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>=????8?>???@?=???>???>????<>????>??@@?@@@@@@A@?@A>@?@@><87: MC:Z:151M MD:Z:100C50 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKFKKKKKFKKKKKKKKKKKK=>?>>=>=<=>===>========<=<=<====>=>=>>>=>>>>>>>>=>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>>>>????????@?????>???>?????>????>?>???@@@@@@A@?@@@@@@@@@@=<:7? MC:Z:151M MD:Z:97C53 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HJYFJCCXX160204:5:1202:4493:72420 83 4 57194430 60 151M = 57194283 -298 GATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCAT >99<>@??@A@@@A@??@???@>??????:>?>?>??>==????>=>=>=?>>>>>>=>>=>>>>>>=>>>>>=>>>>>>>>>>>>>=>>>>>>>=>?=<=>===>><>==>=<======<==<=====<>=====>=>>>>>>>??>=?> MC:Z:151M MD:Z:30A64C55 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:2 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKAKFKKKFFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HK35NCCXX160204:1:1219:25905:68306 163 4 57194432 60 151M = 57194547 266 TCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCGCTCTGAAGCTGTAACCCAGAAGGCACATCCATTC -;<>>;9>;>>?7;;>>7>>==>>;;446>+8;<>?>>;>>>;<=>=>4=;+8>==;;>8>>>>>4>>>;+9=?=)8:;7>>-;;1+=??=@=@>><@/:*?AAA@A@@@@A@@@A@?????=????@??@>??????@>??@?@?>???>?>>>>>>>?>>>>>>>>?>>=>>>>>>>?>>>>>>>>>>>??>>>>>>>>>?>>>>>>>>>>?>?>>>?>?>>?>>>>>?>>?>>>>>>>?>?>>> MC:Z:151M MD:Z:93C57 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:6>???>>>>;7<1>>=?>>?>=>>>=>?:/98>?->>/7>>>>>>>>>=>><;>>>>?=7361))->?@===?96??=?>@@->>>1??::5>??<2***;<@?A>>@;@A;<=7983>?9/))7.5893+/?-49(>@AA@####### MC:Z:151M MD:Z:14A64C70A0 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:3 MQ:i:60 OQ:Z:?>>>>>9>>>?>>?>>?>>>>?>>>?>??>>>>>>?>>>>>??>>?>>>>>?>>>>>>>>?>?>>>>>>>>>>>??>>>>>>>>????????????@?@=?@@>@?>?@????5??@??????@@@@@?@@@@@@@;@?<17;6 MC:Z:151M MD:Z:13A64C72 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:??=>>>>>=8=>=>>>=>=>>>>>=>=<==?>>>>>>=>>>>>>>>>=>>>>>>>>>>>>>>>>>>>>>>?>?????@?>???????>?>?????????????@?@@@@@A@@@@?@??A@@@@@@@AAAA@?AAAAAAAA@>586< MC:Z:151M MD:Z:13A64C72 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKFKKKFKKF UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:23967:16428 1171 4 57194450 60 151M = 57194321 -280 AAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGT ?89:>@@@@;@@?@?@@@?@?@@@@>?>?>@??????>??>??????>?==??=?????>>>>><>>=>>>>>>>=>?>=>>>=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>><========<====<========>==8>?>?;8= MC:Z:151M MD:Z:10A64C75 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:KKA7FFKKKKKKFKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:24403:16234 147 4 57194450 60 151M = 57194321 -280 AAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGT ?89=@@@@@:@?5@?@@@?@@@@@@>?>?>@??????>??>??????>????=>?????>>>>>>>>=>>>>>>>=>?>=>><=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>><========<====<========>==8>?>?;8= MC:Z:151M MD:Z:10A64C75 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:KKKFAFKKKFKF7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2107:10115:12613 99 4 57194460 60 151M = 57194635 326 GTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAG >@>>?>>>>=>>===<==<==>======<==<=<;<==<=<====>=>>>=>>>>=>>>>>736=><>;><=>>=>>>=>>>>>=><>>=;<=>=:>=>>>?>=>>>>=>>>??>??>????>?>=?????@>?:??>@@?@;9@?==;?>>>>>?>>>?:>>>>>>>>>>>>>>>?>>>>>>>>?>>>>/33>>>?>>>>>>>>>>>@??;???????=<>????????@?@???@>@??@=?==?@?<:?6@'=??2<@@@@@@@@@@>>9*2<@(B=?<@/<-=/=><#### MC:Z:151M MD:Z:61C43A41T3 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKAFKKKKKKKFKKKKKKKKKKKKKKKKKKKK7<>??>8>>>>>=>=>======<=======>=<>:>>>>?>=>>>>;<>>?>>>><;=>9>>?>>>>>88;=<>>>6?=)8<>;?>;<>>>=>9==8->>???????<-;),7.;,9: MC:Z:151M MD:Z:60C16T57T0G14 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKFKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKFAKKKKKKKFFFKAKKKKKKKKA7AFAKKK>>?>?>>>>>>>>>>>>>>?>>>>>>>>?>>>>>>>>>>?>:>=<<>>>>>??>>>>?>>??@????9=???;@?@=?>@?@??@?7?>=;@==>;,,=<585;@@?8@9?9AA:/<=?:=9>>>>;>>1<82==&<>>>>>>==>>>>==07>5<4=>>=(<=398<;4:>;5=>,>5:,4,=:;??<6;@?@=?=:<@??>7;:?8>>=>9=8@@@;;'*1>95A?6?2..<4/>===4.*8>355: MC:Z:151M MD:Z:55C95 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:?@?@?B@@?<;@?@@?@@@@?>>?????>??????????>??>??=???<>?@?=>>>=>>>=>=>>>=>>=:;><>>=>>>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>==;>==8==;==<==<==<==>=<=<=>?=>=>= MC:Z:151M MD:Z:55C95 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KFAFKKKKKKKKFFAAKKKKKKKFKKFKFAKKKKKKKKKKKKKKFKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKFAAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKFKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:4:1220:10998:62945 147 4 57194472 60 151M = 57194201 -422 GCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTG 868:>?B?AAAAAAA@@@@@@@@A><@/@@??@@@?@????@???>???????>?@?>???>???>?>???>???<>>>>>=>?>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>>>>?>>8=====<==<==<==?=<><>=>>>>><0= MC:Z:151M MD:Z:53C97 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:>?>>>?>=====<==<=<====<=<===<=====<====<=====>>>>>>>?>>>>>=>>>=>>>>>=>>>>=>=>>=>>>>>>?>=>>>>=>>>>>=>>=>>>>=?>??????@>?:??>?????>??>??@@@@@@@@@?><;:? MC:Z:151M MD:Z:52C98 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1219:20466:25552 83 4 57194474 60 151M = 57194345 -280 AGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTT ?:;<>>A@=9@@@???>???>??>?>???>???????????>>=>>>>>>>=>?>=>>>=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>>=>>>>>>>>=>=>><========>==8==<==<==<==<==>=<=<>>>>>>??=;=> MC:Z:151M MD:Z:51C99 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKKF??>??==??>=69=?=<><==9??;<>>>>>>?>>>>>>>>>?>>>>>>>>>=>=<;>>?>>>>?>:><8?>>?>>>>>><>>>>>>>>>>==7><>9<5;=>=<=>>>=>>??=>>>>>>>>>??<>?; MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:KKFFF=>?>@>>>>>><=><======<=<===<=====<====<====>>>>>>>>?>>>>>=>>>=>>>>>=>>>>=>=>>=>>>>>>?>=>>>>=>>>>>=>>=>>>>>?>??????@>?:??>?????>??>??@@@@@@@@@@@@?><;;? MC:Z:151M MD:Z:49C101 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HK35NCCXX160204:1:2217:26332:34764 83 4 57194477 60 151M = 57194383 -245 GAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATT >;:=>?@@@@@@@@@@??@???????>??????????????????>>>>>??>>>>=>>>>?>>>>=>>>>>>=>>>>?>>>>?>>>>>?>>?>>>>>>=>>>>=>>>=>>>>?<>9==>========<==>>==>>>>>>>>=>???>?? MC:Z:151M MD:Z:48C102 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:FKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:5:1220:16934:43800 163 4 57194486 60 151M = 57194723 388 GGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACGCTGAAGCTGTCACCCAGCAGGCACCTCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCC =;=??>>==>=>6><=>=<====,:<>===>>>>>2;>=>>>?>>>>><>=>=>=9>>=(7;>=$2>8<99>=>>0<=>>>>7>9>>>>%<=???>9-6??;??==>?:??>?4=?==9;=;;@9=>5>1*??=AA@@@>?<76? MC:Z:151M MD:Z:39C24T10A6A6A61 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:5 MQ:i:60 OQ:Z:AAAFFKKKKKKK7FKKKKKKKKK,FFKKKKKKKKK?>?=>>>=<=<===<=====<====<============>=====<>>>=>>>>>=>>>>=>=>>==>>>>>?>=<>>>=>>>>>=>>=>>>>=>=>>>>>>?=>9>>;>????>??>???*;>A@@?@@@??;9:# MC:Z:151M MD:Z:38C112 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKFFKKKKKKKKKKF,==<=<===<=====<==#=<==6==)5+;=>>?>>/<>=>>==>/=><=6>;>=><=><>>>>;/6)&<<>>=>>><<=>>=(86/=<>?>8?<>@><:??'??>?5;??>:?@?8>???@@@:>@-@>8@@3+3+@;536=:9 MC:Z:151M MD:Z:0A23A7C3C114 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:#AAFFKKKKKKKKKKKAKKKKKKK#KKFK7FK,A7AFKKKKK,AKKKKFKK,FKFKAKFKKKFFKFKKKKA,A,,FFKKKKKKFFKKKK,A7,FFKKF7KAFKKFKKK,AFFK7AFFFAAKK7FAKFKKKAFA,A<?>>=?>>>>>>?>>>>>>>=>=>>>>=====>>>?>>>>>>>>>>=>>>>>>>>>>?>?>>=>>?>>?>>>>>>>>>>>>>>>>>>>>>;;>>>>>>?>>9???@??=?=,8?>?@???????????@:5=@??@@@@<@???@?>>:;= MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKFKF,>?<=>?79*0*<;=<;===>>3662=:;<,><3<>><;<;96*:$<<>=?;=??>?>>,;'9<-;:=97>.8>.8$-8)9.8=9)4>2-7<3%80#68)%.-26=>@@18>>%)%1&&0).-,>746>=@A@991*#/.>>95<7 MC:Z:2S149M MD:Z:27T0C1T19C30C2T5T2T7T4A1T5T27C8 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:13 MQ:i:60 OQ:Z:AAFFF><<>=8);<><==>>>>=>=>:9<>><=>599>7:+);>>>>=*>=>>;>=<;;>>===8>?:?<>>>??>(19;2<=?>?>?=6;>9A?>@@),;;;> MC:Z:151M MD:Z:24C3C77A44 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:A>>>>===;================>:====>=>=<=>=======>>>>>>=>>>>>>?>>>>>>=>>>>>>>>>>>:>=>>>>>>>:>;>9>>;>>>>==>???>=??:=>>?(>???9>.29@??@@@@@3<18/?<;?>>>>5<;>>>?>>><>8-=<:;><=>;><-78;9>77>>>>>>>=>:>>>?>=(,6<:>>71<>(47/7,-=>>>)=>;->(6+++6<+=7;/&,88&.+9-7;=-1:)&+59==06<:,;,2:<,-)79:############ MC:Z:8S143M MD:Z:27C55T5T15A11G17A3T6 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:7 MQ:i:60 OQ:Z:<>@@=?@@@@>??>=??????>?@?>=??>???>?>=>>=>8>>>>=>>=>>>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>>>>?<>7>>>>>=>>=>==>=>=<=<=========<=>==<====>====<=>>?>>>>>?><> MC:Z:151M MD:Z:25C125 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKAKFKKFAFFKFFFKKFKKKKKKKKKKKFKKKKKKKKKFKKFF?@?===A>AAAAA@@@AAA@AAA@@@@@A@AA?=??@@@A@@???@?@??@?????@??@????????????????@@@@@?>:>???>>>>>>?>>>??>>>>>>>>>>?>>??>?>>>>>?>>>?>>???>?>>>>>>??>=>< MC:Z:151M MD:Z:20C130 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AFAKAKKF<9=?>??:???@????@?=???@<>.>?=69>8>????;,>,>6?>9>>>>>>>>>>>>>=>>>>4:>;>>>>>>>>?<=>><>;='===6>>>?>>>>>><>?>==@< MC:Z:151M MD:Z:20C107A22 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:2 MQ:i:60 OQ:Z:#######AA,AA<&<5.2-7?9/(.1.'-->=/<-5=096;=6(;;.1,.58;2;,<:87>7)->8>=:9<-;988>>>>==<,<926?>=====><.:;>>>>?>>>?==>>< MD:Z:10T6A1C9A10C38A48 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:6 OQ:Z:#######################AAA,,A7,,7((7>>><9>>>>>?>>>>>>>>>99>>=8<;<=5?8>=>;8>?>>?>>>>>5>>@??6;=???????<<>??;>?@??:?&&89>>>?@@@@@@@@A@@@@@@?*9>@=@@@A@>A@===3>9?>?><@=:6;< MC:Z:4S147M MD:Z:17C70A62 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:A>;==?>>?>>>>>>>>>>>??>>>>>>>>>?>>>>=>>>;>?>?>>=?>?>>?>>>>>?>>?>>>>>>>>>>>>>;>>>>>>?>>9>>;?>>>>>>>=;??=>=>???????@??>6>?)9??>@???@??@??-;>9=<87=?9==9;< MC:Z:151M MD:Z:17C133 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFFKKKKKFFFFAKKFKFKKKKKKKKKKKF7KK,AKKKKKKKKKKKFF,AF7FA7AAF7AKKFA UQ:i:42 AS:i:146 +HK35MCCXX160204:2:2202:13778:7110 83 4 57194523 60 151M = 57194446 -228 ATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCT <97@@>>5?<@?@???@?@??@?;??9@??@80===><98>6>>>>;5>90=;=8>>>>>:->>??>>:><884849<;>;>>>=<;<=;==9-<(<>>?>>=86>:94;?==;>>8882==?6??687> MC:Z:151M MD:Z:2C148 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:A7FFKKKKF??>?>>>>==<>=>>>=>>>>>>>=>9>4=>>>?>>>>>>>>>>>>>>>>>>><>>>>=6=>:9>>9>9;=<???>;<>????;???????.>.???>9.87>@@>@@@=@=?:AA5?@@@AAAA:=AAAA?AA@@>;89# MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKKKKKKKKKKKK7FAKKKKKKKKKKKFKFKKKKKKKKKKAKKKFF7FK>>>>===<===============<======?=>===>=======>>>>>>>>>>>>>>>>?>>9>>>>>>>>>>>>>>?>>>>>>=>>>>>>>>?>>>>>??@????????@???>??????>???????@@@@@@@@?><;?: MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAA UQ:i:32 AS:i:149 +HK35MCCXX160204:5:1204:10307:19874 147 4 57194525 60 151M = 57194086 -590 GTTAGTTTTCATGCGTTTCCCCCGCTCTGAAGCGGTAACTCAGAAGGCGCATCCATTCGCGTTTTCACCGCACTGTGGATTCATAGTGTCGGGCCCTGTTATTCCAATACACTCGTTATGGACATGTGAAGCATTTGGCCCAGTTGGCTCC ##################################################==69?<=%'8';.78(-4288618?><86::5;+<2-%.$4&4''1>;>?>=><<+,;,1,58&&-+,-75:16>;;<>?>=>6>><=''7?;>?=>:<*< MC:Z:151M MD:Z:0C12A4T4A9T5C8A9A1A4T23G20C3C3A32 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:14 MQ:i:60 OQ:Z:##################################################AA??@@@@@@@??@??????>?????????@??????????>>>>>=>>>>=>>>>>>>>?>>9>>>>>>>>>>>=>>?>>>>>>>>>>>>>>>?>><====>>>==<>=>>===<;&===================>>>>>??>==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF<,KKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1108:28036:59306 99 4 57194529 60 151M = 57194815 437 GCTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGTTTCATAGTGTGGGGCCCTGTTATTCCAAGACCCTCCTTAAGGACATGTGAGGCATTTGGCCCAGTTGGCTCCCAGG >-???>>=>=>8>9=<=7;;1>:=<<),01-88<:*01<<2;;<*.5:<35=>:>=>>/8=>42;5>15250=50:1**7(,<-=<>=8%<;18/00/86>9*+7108218??8*>8769==/9>,-'7??/6;1==;############# MC:Z:151M MD:Z:1T72A28T21A25 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:A,AAFKKAKKF?>=??>=>>>>>=>===<=<==<======>=<====<=>=>><>><>=>=<:=>>>>>>?=>9>>=>>>>==>>=>>?>>>>>>>>>>>>>>>?>>=>>>>:=>>>>=???>>?>>?????>?????????????@@@?@@@<:4><:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKFKKKAA8:;>>=0=<=:;@?@?@=@????@?>?>;@?>>???????????????????>=9<9>>>>>>>>>>>>>>??>=>>>>>>>>>>>>?>>>>>>><7>>>>>>>?>?>>===>>>>>?>>>==>=>=>=>>>>===>>=>?>>>?>=>>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:FKKK4)..+.;&9*=%(>>>2(2/.>??->6.>=>97.+8=9>:<>>:>>=.:-)=98=:0/2<<<9=>>=<>=><>>,=<.==7<=8%>-><==:...>=>< MC:Z:138M13S MD:Z:6T4A19A4A66T14 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:5 MQ:i:60 OQ:Z:#############################################A7KFA,A<,,7,,<(A,A(,KKK7,7,,KFF,F<,KAKA7,,7FKKAAKKFFKF,<,,F<7K<<(@>?>?>>>=>===<======>=<====<=====<==<====<==>=>>>>?=>9>>=>>>>>=>>=>>?>>>>>>>>>>>>>>>?>>=>>6=<=>>>=>>>?&6>==<>???>?>?:????>??=:>>?????>???@@@46=@??=;:# MC:Z:151M MD:Z:103A47 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@@>@@?@????>@??????>????????>????>?>>>>>>>?=>9>>>>>=>>=>>=>>?>=>=>>>>>>>>>=>?>>=>>>>?>>>>=>>>?>>>==>>=<=<==============<=====<======<>>>>>>?=?>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1223:10236:52660 163 4 57194543 60 151M = 57194777 385 TCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTT =:<==?==<==<======?=<>====>===>=>>=>>>>=>=>>>>>>:=>9>>=>>=>>;>>=>>?>=>>>>>?>??????@??>????@>???>??=????>>?==??>?@@@@@@@=@>@@5?@>8@A@??@@@:1@@@@A@@?#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFFKF;:<????>???>==???>>><@?>9>>>>>>>>>>>=>>>?>=%:>5>=>>>>>>?>>=>>>>?><>>8><>?>?>>><>>>>>>?=>>>>=;>>==?===<=<<===>=====>>>>>?>=>???>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:KKA=:>;><>>;3<:-;9==>>>>>>>>><>>>>=>9/>>&.)7<>->>17,+<=770(77<:>0(/:>??.<>9=<;>>><?<=6==<--1/:*).6?<=3>0+&1:7*1??9############### MC:Z:151M MD:Z:141A9 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:?=A@<@==)-@@@A@@@??>>????????????????@>?:???@>???=?>>>>??>>>>><>>>>9>>=?>>>>>>>?6>>?>>?>>>?>>:>>>>>>>?>>>>>>>>>>>?>>>><;<<;>?>>>>>>>>>>?6>>>@?:>8> MC:Z:151M MD:Z:13A137 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:#A>??>>=>=?=<==>=<=====<>><=>>>=>=>>>>>>?=>9>>=>>>>>>>>=>>?>>>>>>>>>>>;7>>>>>=>>>>@=>>?>???@??>?>?>???>????????????@@@@@@?@>@@@?9?>@>@A>>@BAA:@A?>;89: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKAFKKFKKKKKKKKKKKKKKKFKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKF78;>@@AAAAAAAAAA<>?>?<-@@@@?@8.8=?7@<;<@@@;@>=@??=:???>?????=9??@@=@?????@==?=>7=>>;;>===>>>>=8?8(>>>>>=>>>?>?>;>>>?>>>>>>>????>6???>??<=>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:<=====<==<====<=<======><=8>>=>>>>>9<><>>?>>>>><>>>>>=>>>?>>=>><>?=>>>=>>>?>>>==>>>>>>????==>?????????????>????????>????@A@@@@A=@@?A@A@?@@?><:7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAKFKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAAFKKKKKKFKKKKKKKKKKKKKFKKKKKFFKKKAKKAKKFKKKKKKKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:4:2116:13565:10714 147 4 57194561 60 151M = 57194342 -370 AACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGAC =;7;=A=-?;?=??<@???<=?????@??>@=???@?=?9;?@?@?@??>?>>>>>>?>>>>>><>>7>?>>=>>?;>>>?>>>>>>>>>>?>>>>?>>>>??>>>>?>???<<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FAFKKFA,7FFFFKAFKFFAFKKFKFFAF>??=>??>??>??@?>?>?????>>=>>>>?=>>>=>>=?>>>=>>>>=>=>>>>>>;>>>>>>>=>>>>>=>=>>>>=>======>====>===<>=<=<==<====???=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKFF,1)&:--;=?=<)<5%&%(;8==%7$8.''-8-'-$8.7-28+;/8&$$$=1;:$$&'$1&%<>>>:5)-%<:4<;><>43..8,5(<013>.??4>>2=???<>.:59/..><:>################################# MC:Z:151M MD:Z:22T6A1T4A0T0T1A1A8C49T8A9T6A3 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:13 MQ:i:60 OQ:Z:AA,,,,A,,AFFKA,AA,,(,<8:<>@@@@?A@@@?@@???>=@A>=:?????>=?>??>??@?;7>?????????>?@?>=>>>>>>=>>>?>>6=>>>>=>=>>>>>>>>>>>>=>=>>>>>=>>>>>>=>;>====>====>===<>=<=<==<===<=>??><>= MC:Z:151M MD:Z:145A5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKFKKKKKKKKKFKKKKFAFFAKKFAKKKKKKKFKKKKKKKKFF)(,.=7,-?;9)???==96,+==(7+=:@????=??>>>>>?7>>7>;43>8>?>>>482>889?>>>>:>>>>>?>>>;?+>>>??>>>>?>>>98>>>?;=9/< MC:Z:151M MD:Z:20T49C73A6 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:3 MQ:i:60 OQ:Z:##############################FAA,,,,A<,,FFFA,FKKFFA,FFKKFKKFF<7,,FF,7,F=>==<9<==8<==8<=8==<===5<9=/9;>?=<5<4,4*&7317<>?>>=>>>>?=>><<:=<:9+<;=5>8=-:6<<>>:>5+8679=>??<>:5;>>??@??/==;=>?A@>@9?;A@@?A>##### MC:Z:151M MD:Z:139A11 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAF?@A?A>A?????@??@????????>>>>>>>?>>=>>>>?>>>>=>>>?>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><=====>>===>=>=>====>====>==============>>=>??>?>=? MC:Z:151M MD:Z:139A11 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:7KKKKKKFKFAFAAKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2111:29143:57495 147 4 57194577 60 151M = 57194257 -471 CCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGC ?8:<=<1;9:?=4;@@;;@@@@?@=>??>??=?<:7????>????>?@?=>?>=:'8??==>>>?=>>=><>>=>=>>>>>>>;6>>>>>=>>;>>=>>>>>>=>>>>>>>?>>>>?==/<:=<=<==<===:=====<=>=<==??>=;= MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKFFA<,<7=><=8==<=====<==<==>=======>>>>>>>>?>>=>>>>?=>>>=>>>?>>>==>>>>>=>>>>>>>>>>>>>>>>>>>=>?>?????@????@????@???>??>??@??@@@@?@A@?@?A@?@@@?;:8? MC:Z:151M MD:Z:129A21 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:1124:17787:48054 147 4 57194587 60 151M = 57194476 -262 TTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCA >88;=?;A@@A@@AA?@@?@@A@?@?@@@@@@@@@<@@??@????@>???>???@???>?>>>=>=>>>>>>>>=8=>>>=>>>>><==>>>>=>>>>>>>?>>>>?>>>=?>=>=>>=>>>==>>>=<=>===<==<===?=>>?;><<: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:KFKFKFKKFA@?@@?@@?@?;@?@>???:?????>?@??>????@????>???@=>?<7>>>=>=>>>>>>>>>>>>>>=>>>>>=>>>>>>=>>>>>>>?>>>>?>>>=?>=>=>=<===<===#=<=>=<=<==<===>==>?<><>= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KFKAAFFKK?<@A@@@A@@@??@@A?@?@@?@??=@??????????@???????=???@?????@?>??@????=?>?>>?>>>>?>>>>??>>>>?>>>?>>>>>>>???>>>>?>?>??>>>?>>>>>?>>>?>??==:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FFKKKKKFFAFKAFAA,FFAFKKKKKFKFFFFFKFKKKFFKKFAKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1212:3671:37875 99 4 57194602 60 151M = 57194950 499 GATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAG >;=<>=>?>=>>===========>==<====><===<===>===<==>><>=>>>>>>>>>>>>;=>8=>>><>>>>>>=>=>>>>>?>>>>?>>>=<>>>=>>;:*<==????>??>?>>???@>?>+=?>?>?@@?@?@??>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A<<:-08>=;:0/3/''0>9<**9&0;)/*0&+78...**.<302>>>>=>8$(<>;;0/50<9...??<7;<.8/(&=8>=<>?0+>7:?@@?@/9197@:@############################# MC:Z:151M MD:Z:50A44A29A15T9 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:4 MQ:i:60 OQ:Z:,,<===5========>==<====><===<>>>?>>>==>=>>>=>>>;<>>>>>>>>>>>=<>:;7>>>>>=>=>>>>>?>6=<9>>??@???:=;=???>>?=?9>?@?>?>??>???>>@?@@03;?A@@?@@?=3=A?>=9:< MC:Z:151M MD:Z:107A43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKAKKK6=6/&9<>?<@A7=>.?/;9--=-@@?>19->)/:?=>@=<<><@89-<=?5==7<3@>???>9+5?>?:<>>??;9>=?7>>?8>>>>><=>?>=<>?>=;??>=>?>>>>>?>>>?>>>?>?>???9=< MC:Z:151M MD:Z:34A116 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:#AF<<((/@:(:(?>;<37007<=9;(');>>6..(3)8)&207>=>>;>>><9><><:=,>:?<57<,8=>>:;86>>>=8(73--6>==>==<==993<=>=><8< MC:Z:151M MD:Z:15T12T79T42 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:3 MQ:i:60 OQ:Z:################################A,AA,7,AAF<<7,7=6:=4:3>;;>>2>8>=744<='9=>=;=79>>/<5,857>)054::(84=381>;8&=;97<=5??=>>>?<-:>=/><68<4=;'=19988<>8<=;=;'-5'/+7>8',<6-'?:?>?)-7?3?>71>(;?@<<### MC:Z:151M MD:Z:41A100A8 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAAAF<:+0//@>=:@@@@@??;?@@?@?>???????>6>?:>?????????????9???>>>>>>?>>>>>>=4<=9=><>>=>?>>>>>>>>>>?>>>==<<>=>>>=>>><>=>=>===>=>=>?=>>==; MC:Z:151M MD:Z:17T133 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:77FAA@@=>@@=@??@?@??????????@???????????@????;5?>>>>>>>??>>>>>?>>>>?>>>>??>>>>?>>>?>>>>>>>>??>>>>?>?>=>>>>?>>>>==>>>>>>>>>>>??===< MC:Z:134M17S MD:Z:136 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:FA???@?>?>????>?>????????>>>>>>=>>>>>=>>>>>>=>>>>>>>?>>>>?>>>=?>=>=>>=>>>=>>>>>=>?>=>=>><>>=>====<=<=====<==<<=<==<=<==<=<=>>=>?>?=>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKFKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:7:2215:6147:36575 99 4 57194621 60 151M = 57194794 324 TGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCTCCATCTAGGGCAGT >;=???>>>>>>?>>>?>=>=?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>?>>>>?>>>>>>>>>>?>>>>?>>>>??>>>>?>>>?>>>>?>?@@@????@?@?@@???@?????@???@???@?@?@A@@@@A@@@@@A@A?><::? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:19319:5036 99 4 57194622 60 134M17S = 57194620 134 GTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATAGATCGGAACAGCACAC >>>???>>>>>?>>>?>>?>>>==>>>=====>>>>>>>>>>>>>>=>>>>?>>>>>>>>>>>>>>>?>>>>?>>>>?>>>>>>>>>>>>>>>>>??>>>>>????@@?????????@???@???@?@???>??@@@@@;@??4??><:9? MC:Z:15S136M MD:Z:134 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKK??70-;?;==99?2?>>??:7:>??:??=:98%>>>>=>5<=>:5<8>/<<>=>=<=78;<337;/7;<;=>=<=<=>=<<>>>9=;?><=68><>8=?====<=<=<=:=<==<<=<==<=<==<>=====>?><+>??7;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<=?>=><===<===>===<<=#===<=====>>>>>>>>>>>=>>>=>>>>>>=>=>>>>>?>>>>?>>>>?>>>=>>=>>>==>>>>=?@?>?>??>???(;?????>?>???>???>?>???@??@?@<;>@?@AA@@(36@7::? MC:Z:151M MD:Z:24T126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKKKKKKKKKKKKKKKKFKKKAAFKKKKKKK,77A>@3?@@?@???=????6???>??@?????>>*8?=>*<>>>>>=>>=>=>>9>>>>=?>==>>>>>>?>><>>>=>>>>>=>>>>>>=>=>>=9>>>>==>>====<=====<=<======<=<===8<=<===>>>>>>?=>>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKFKKFF7KKKKKKKKFKKKF??@>>>?>>>>>?>>>>>?>>>>==?>>>>>>>>?:>?>>><>>>>>>==,0=9>>?>>?=>>>5>?>?;>>>>>>>?>>?>>>?>>?>>?>.<=7==;?7:;???@?7-9=>>85;=4:>?@>>=>@@;@A=?:?@72:<8###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:?><=>====><==<==><=======>===>>>>>=><>>>>>8>9>>=>>?>>=>>>>>>?>>><>>=>>=>==>><>>>=>=>>=9????>?><;?;???>9???>=9>:9@9@0??=>;<=@@A@=@19<=9## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKK>?==>===8;<==<==><=======>=====;>>;>>;>>>>=>7>;>>>?>>'.)4<3=?><>>>==<,8>>=>>>>>>=>=>==9>=??>?>?????2=>?>?>?8???>???7>>?8@681=%*(=5A@?<><### MC:Z:151M MD:Z:57C93 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKK<>>>>>====><==:=7><===#=<=><===8&8===8=><>>=>9'7==77>>;>>>>.=0<=<=4<=><;><;<>=<>>=>(==558:=>*<'882=<=6>>?>;?8<>?:1?=################################# MC:Z:151M MD:Z:24A9C87C10C6C2C7 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFK7KKKKK#KFKKFKKK<,AFFF7FKFKKFKK,AFF7AKKFKKKK7A7FFFF7FKKFFKAAFFFFKKKK,FA?@<@=@A?=<;8/*<8/)>,6?>@:?@?>:=@??=9'?;;84<<>??@??>???@?=<>8??>>=>>>?@>>?>>?>=>=9>>>>>;=>>>?<;=>:>>>;>=5>8(5>>>?>>8=?<=>>>><==>>>>>>>>>>?9==;:< MC:Z:151M MD:Z:18T3A128 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:7AKFAFA>>>>=>>>>>>>>>?>>?>>>>>>>>>>>>>>>9>>?>>?>>>>>>>>??>>>>>>>>>>???>>>>>????>??:?@>>>????????>?>??>??=?=@@@@??>??:???;<8?@@@@@?@@@@AA@>9>@A@=?>;86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKAKFKFKKKKKKKKKKFA>?@?@@@A????????@??????????>??>9>??:>>>>=?>==>>>>>>?>>>>>>=>>>>%=>>>>>>=>=>><'>>>>=><>>>>>=>>>>>=>==*>===<=<=<-8<=<======-=<====<>=5==>>>><>??>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKKFFFKKKFKKFKKKKFKKFKKKKKKKKKKKKKAKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKF,KKKKKKKKKKKKF,KKKKKKFKKKKKKKKKKKKKKF,KKKKKKKKF,KKKKKKKKFF,KFKKKKFFF=?@@@A@@@?????@??????????????????:??????>>=>>>>>>?>>>>>>>>>>>>>>>>>>>>>>>>=9>>>>>><>>>>>>>>>>>>======>>===>=>8===================<=====>>>>>???=@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:KKKKKAAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:2212:12682:53346 83 5 156355146 60 151M = 156354993 -304 TACAACATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGA #76;=<:>==>><@@@?;88.>@@?@@@???>9??7??@??@@???==??@@?>????>?>>@?>>?>>?>>?>>>>9>??>>=;>>>?>>>>>>>>?>>?>>>?>>>?>>9=?>>?>>>>>>>?>===??>>?>>?>>>>>>>??@?==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:#KA=2??@@;-??>?=>>8->><>>?>>>>>>?=5>>>>>>>=9>>>><8+=<9<0>><8;>>?>>>>>>?>>=?<=6>?>;=>>==>======:==<=>===>>>>>>>?=???>><< MC:Z:92M59S MD:Z:2A148 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:################FKKKKAA:4(@@6A:AAAA=@@AAA@AAA?@@@@@@?@;@?:@@A@@>??????@?=??????????????????????>9?>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>==7>>>>>>>====>=>>>>>>==>>>=>===>>>>>>??==9; MC:Z:151M MD:Z:4A146 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:<<7A,FA7A7KKAFFKFFKKKFFFFKKKKKKKKKKF>>>>>>>>??>?>>>>>>>=>>>>>>>9>>?>>>?>>><>?>=?<;<>>>>?>>?>>>?>>?>>?>>>>9>?>>>>>><>?>><=>==>?8,+=?;@69>@??7>9<<8=??38?;819?<@5:7)'5/>)6@@0@;@)=;>;:5## MC:Z:21S130M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKFKKFKKKKKKKKKKKKKFKKKKFKKKAKAAFKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKFFKKKAFKFFKK7,,FKAK7AFKKKFFAAA:97=@8?;;@>A@@AA8>:6;/:),>;?5?96=?;>?:?@?????:?@?=1:,???@??>><>>>?>>>>>>?>>>?>>9>?>>>>>>>>>>?>>>>>9==?>7?>>>>>>>?>?>?>?>9:<6< MC:Z:151M MD:Z:1T149 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:####################FA7?::*>:.;91??=0>?804><>:>>8631>>>>/4;4>>=.8>>>0;0*&=815=><>>>:93:9=>=8.>>:2/=67>>=:<=6>>>>=>>>=>=9; MC:Z:151M MD:Z:2A8A2T7T8C3T66A48 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:7 MQ:i:60 OQ:Z:#################################################FKKFAAA,AA,7A7FKF,FF7,AFAA7FF7A77KKKF,/8(8<5=%/@;?;A@9,/'8@@@A?;6?>>911)>1?1):???>?8=?)><<:?@>.:>====;(?<5&><4?9><-==?5>9=883(?>>>98>>>>>=>>>>?===>>==>>=>>>>?>?>?>?2>>?<;< MC:Z:151M MD:Z:5A2T47T94 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:##########FAFAAKF<,<,7A<<((KKFAKFA,,,7KKKFKA7FAAA77,A7KA,AKFKFFAFF,FAAKKKF,AFFFFF<,KA7(KF??>>>??>?>>>>>>>>>>>>>>>9>>?>>??>><>>?>;?>>>>>>>?>>?>>>?>>?>??>?>?:?@??>?????@?<<=????@.9<>?@>=8?@>==??:46@4?@@@@A@?@?;3;<4<=@:/?@A?@@@@????=>??>?;??:????>@?>>>????>?>>>>>>=>>>>>=>>>>>>=>=>>=9>>>>=>>>>>>>=>>>>>=>=>>>>>>=>=>>>9===>===============<=============<=<>=>==>>??>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKFKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1111:8836:13035 163 5 156355156 60 151M = 156355264 259 AAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCT =<<>>?>>=======<5=========6=====>=>=>>;>>>?>>;>>>3;=<<>=>>>;>>=>=>597><=:=<;<>>>>9>=>>>=>=>=??????>???89>=/8???==?/>=?=<@?;9?>@<;?@>?443+;:### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKF7FKKKKKKKKFKKKKKKKKKKKFKKKKKKAKKK7AFF???>?>>========<=======8=====>==<======>=====>=9>>>>=>>>>>>=>=>>=9>>>>=>=>>>>>==>>>>=>=;>>>>>=>=>=>9=>=86>>?<=?>?>?<>>????<;?@?=?8@9@@?@?=18=<### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAKKKKKFKKKFKKKKK77FKKFFKKAFFKKFAKAKKKKAAFFKFK=>????>?>707>>>44>:=>/<9>>>>>>=>9>>>?3>=>>>>>>>=>3:>>>?>>=>>?>,9=78887>?;==?06806;9?6<69<@>>?:>?08;?)?>:***.'.:1@0A,;7<@3:?>-@@1A9>*>9@9@:;*+:=7?> MC:Z:151M MD:Z:105T45 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:99:>9A@?A?AA@?A:@A:@=>?6?@A=9@A=9@:>>???@??@??@???>:?@????;?>?@???????>@>>>>>>?>>>?>>9>?>>>>>>>>>>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>??><<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:KF<7<7KFFFFKKFAKAFKAKFAFAFKK8?????@?<:>>>>??@>/9>>>><>>>>>>>>>>>>>>>>=6>:>>>>>=:>>>1<>>>><=>=8=>>>>><=<<6=====<<<=9:==<=====67=<<7==<===========9=>==;??>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:A,A,FKFKFKKKFA7KKFAKFA(FFKKKKKKKF7FFFAKKKF,7KKKKFKKKKKKKKKKKKKKKKKFKAKKKKKFAKKK7AKKKKFFKF7FKKKKKFFFFFKKKKFAFFKAAKFAKKKKFA=??@@??>???????>>??@???>>>?>>?>>?>>>>9>>>>>>>>>>>>>>>>?>>>>=>?>>>?>>9>?>>====>>>>>>>>>====>==>>>=====?>>=?>?<=>=>>?>=>>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:KFF7FFKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:4:1204:9831:50937 83 5 156355159 60 151M = 156355009 -301 AATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAA ><9=??A@@@@@@@@@@@@@??:?>@??@@?????@?@@???????@??@????>>?>>?>>>>9>?>>>>9>>>?>>>>>>>>?>>>>>>?>>>?>>9>?>>>>>=>>>>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>>>?>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FAKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF???>>>>>===========8=====>========>>>===>><===9==>>>>>>=>=>>>9>>>>=>>>>>>>=>>>>>===>>>>>>>>=>>>9=>=>===>?????????????????????????>?>?@@?@@@@@@?>=;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAFKKKKKKKAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:3:1223:21745:14160 147 5 156355160 60 151M = 156354998 -313 ATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAA ####9*@@??A>AAAA>@:@>9>;3@=@?8>@>?A9;=?=>???@?>@<>@?,???@>=?:?@?>>>>>?>>>?>>78=>>>><4>;0>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>>>>@??==< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:####A,FKFFK?>>>>>>==>===8=====>==<======?=>>=>=<<==?==>>>>>>=>=>>=9>>>>=>=>>>>>=><=>>=>=>>>>>>>>=>>>9=><<>>>><>>=?>?=6=?=>???@?????>??>?>??==4@?>@@?A@@?><:;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK/<7?<9A>?@9@<*99AA@@@@;A:2=9.>@:@@A@?@??;@??@??@??:8:?><>9;????@??>?=?????>>??>@>>=<>>9>?>>>:=4>>=>=>>>>?>>>?>>?>>>>>>>?>?>?>?>>?><7>>??>>??>=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:AA,777<,A<?@@??@@??>??:????>@?>>??????@??????>>>>>>=>>>>>>=>=>>=9>>>>=>>>>>>>=>>>>>=>=>>>>>>=>=>>>9=>=>>>>>>>=>>======<=============<=<=<=<==<==>=>?>>???>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1212:6512:47017 99 5 156355166 60 151M = 156355390 375 TGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAA ?==>??>>>>>=====8=====>=========>====>=====>><=====>=>=>>>9>>>>=>>>>>>>=>>>>>=>=>>>>>>>>=>>>9=>=>>>>>>>>>>>???????????????????>?>?>@=/>?>@?@@A@A@??<;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKK7>060,&&)6:,.'+:9/&-6(-05.+4;;8=84=421=08>>3+)9=<3'<:;<>=######################################################################################### MC:Z:151M MD:Z:13C8C3C35C5T8T4T4C4T35A5T0C12A2 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:13 MQ:i:60 OQ:Z:AA0====8===88><=9=;====>==<==>=>>>>>=>>>>>>=><>>=9><>>=>=>>>>>=>>>>>27=>=<>>>====>>9=>8.:>???????>??>??>???????>>?>?*=*>;?@=:;>?AA@??@@@?@5=98= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:=>99>/;7;:78;:0,?;885<;??????=>/?>?>????><7==>>=9===9==>>>>>;=>>>>>;;=<>>>>>=>=>>>9=>=>>;>=>>>>>><;===<====#========;=<=<=<===???<>= MC:Z:72M6D79M MD:Z:6T4G5A10T1G80C24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:KA<,A<,,,,KFFFA<>?>>=8====<8<=<<=====>===8<=;==>>>=>>>>>><><9><7<=>>=>:>>;>)9<>>>>==9><=>>>>>=>>>88>=.;>>/<88;??9;.>?6???=??=::?>=?;?9<22*8=921:==@@@=44;:(<=9;7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:,AAFFFFKKKKFKAAFKFFKKKKKKKKK=?>=>==<======>=====#======<==>>>>=>=>>=9>>>>=>=>>>>><>>>>>=>=>>>>>>>>=>>>9=>=>>>>>>>>=>???>??>??????????>??>?>?>?>>@>=??>?A@@<@@@@@@@??>@??@@=<:8> MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKFKKKAKKKKKKKKKFKKFKFKKKKK UQ:i:2 AS:i:149 +HJYFJCCXX160204:8:2212:5619:49513 99 5 156355182 60 151M = 156355452 421 GCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCA =;??>>=>>====>============<======<=<==<8====<><====><:==>>=>=>>>>>>>>=>;:9=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>=>=?>>>;?>???>?@?@????@??@?<@@?@@@???/39? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:@@=@@@A@>=1?9>?????>??:9>>??>:=>=91:=<>>>>=:5<>>>>=><>>>9=>=>>;4>>>>>>>>>>>>=>=>=>;;4=>>=><><=:;:0=<===<=>==========<<=><==>=>>==???<;> MC:Z:147M4S MD:Z:2T148 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:###AKKKKFFKKKFFF7KAKFKKKKFFFA<7KKFKKKKKFFFA7?>>>>>?===>=>=>=>>>=>>>=>=<=<>>>9>>>>=>>>>>>>=<>>>>=>=>>>>>>>>7>>>9=>>>?????????>???>8>9????????????>=?=@@;=@?>?@??@;>@@?@@@@@A:@?=/??@@@;>?@@,78# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKFFKKKA7F7KKKKKKKKFKKKKAAAFF7FAFF2=9@@AA<3?3@=@;@@@@?@=9?=@?????????????????>1?=385:>=?=>>6>>>>>><>>>==9>=:<<>>>>>>>>>>>>>>>=>>>=>?====>=>>>>>>>=>>>=>====>>>>>?>>=8; MC:Z:151M MD:Z:7T7A135 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:#AFKFA<,,,7F7,<(KKA,A7?;907??>?>94>?==59$2930>=:>68((.=8>>>>=;>>>>>3;>5.>>>===>>==7*==>=7><6:=>>>>>>>======<;=<<:===>======;==========>====<=>>>>@>?????>???==1?>??????><>???:=>=>>>>>>>>>>>>>==;=>>>>>>>>>>>>><==>=>=<>=>>>=>?>>>>>>>>>=<:==<===<===<==============?>?=<= MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#AFFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKFF7AKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKFFKKKKKAKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:2 AS:i:150 +HM3G2CCXX160308:2:1104:19065:11347 163 5 156355200 60 151M = 156355380 331 TGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAG =>=??>>====<======<=<==<8====<=<==>>><>>>>>=>=>>>>>><>;>>>9=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>>?>?:?>>?=?@??????????>>??>????@>@?;>/.=/>9::>?>?>=9->?=;????>?>>><9->=>=>>>9=>=>>;>>>>>>>>>>>>>=>>>>>>>>>>>>=<>===>=>>=>>>==>>==<===<===<===9;==<============<=>=>>=?>?=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A,FA,AA,,<'.)9(<7===9-=5><0>>9;;59;3>>=5(97/>(>>=.(=(.(=(,=->=>;1;;>>>>=>>>>=>>?>>>;(>=2;8<=3)18?>>>>>0>>>?>?>?>>?>>>=@> MC:Z:131M20S MD:Z:11A0T16G44G40G35 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:5 MQ:i:60 OQ:Z:##############################AF7F==>=?>=>=>><8====<=<=====<=====<=<=====<<=<>>=9=>=>>>>>>>>=>>>>=>>9>>>>=>>:>>=;>=>=>:>==>=>>>=>8>>>>>=6;>>*6???>???>??????1::>7>?>>>=??@9@'<@?>=9>>9>=====>>>=>>=>>>>==><9::>>>7:>:=<9=>:>,:=<<8>;$1=>;/:<>>>>8::8<<8?8?;???;??::??9>&0/=:==/=>>:>/@@?@@@@?:/)8@.+=<<########################### MC:Z:151M MD:Z:1A55T34T57T0 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:4 MQ:i:60 OQ:Z:A#AFFKKKKKKKKKKKKKKKKFKKFKKKKKFKFAAKKF7AFAFFKKK7F,AFFFAFF(;:=?<;@??@?@?????=>?????>?>??????>?>???:=>=>>>>>>>>>>>>>>>>=>>>>>>=>>=>>>=>=>==<8==>>>=>?>>>>>>>>===>>><>>=<===<====;========<=<==<=<=<==<>>>>>>>?>>?> MC:Z:151M MD:Z:68G82 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FKKFAAKKKFKKFFKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAF7FKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HK3T5CCXX160204:2:1112:16904:59850 163 5 156355219 60 151M = 156355292 224 GAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGG <>:?>:>?>>>>>>>>?>>>>>>>=>==>>>>?>>>?><7>?>>>>>>>>>>?>>>>?>>>?>>@>?????>@?@>><=>;==????@;??>=?????@???>>>?@@@@>@>>@@@;1@@@@@>><89?@@@=@@B@B@ABA;####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:AA=>?>6>>>?>>,==2=>9>>>>>>?=>>=>)7-(-5=>>>>>91?8')4$,9)$'0?(=7;&7;='.-86/<7+>5:<=@;.':;@@?(/1(/<@*?######## MC:Z:151M MD:Z:50A1T2A8A3A7T8A6A3A3A3A24A21 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:12 MQ:i:60 OQ:Z:AAFAFKKAKKKKKK,FF>>;<7>>=<<>;6;:=<========<===5<9<===<7=>><>=>>:===>>>>>>8<>>=>>=>=>===;>=>>>==<:>>>>>>>>>==>>=>>>==7>=<>>??>0>>=:=<=>)69>?>?>??>?>??@@9@########## MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:?======<=====<=<========<===8=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>=>=>=>;=>=>>>==?>>>>>>7=>?>>??>???>???>??????:????7??@>??>??@?@@?@@@@@@?@?@B?@?><98; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKAFKKK7FAFKKKKFKKKKKKKKKKKFFAFKAAFKFKFF< UQ:i:0 AS:i:151 +HJYFJCCXX160204:5:2118:5578:21596 83 5 156355226 60 151M = 156355092 -285 TTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACAT ######?@@@>?.8>>;/;??????>?=???:=?>??>>>??>==>>=;>>=>>>>>>>>>>>>>=><:==<;>>=9>=>?>>>>>>>>>>=<>>=>>=<=>===>>=>>=>=====<=<==<=<=<==<=======>=>>>>=>??>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:######KKAKFA,AFFA,AKKKKKFKKFKKKKFKKKFKKKKKFFFKKFAKKKKKKKKKKKKFKKKKKF7KAFFKFFAKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:2:2215:26260:22581 147 5 156355233 60 151M = 156355126 -258 CACGATGGGGAGATTGCGGTGAGCCGAGATTGCGCCCCTGCACTTCAGCCTGGCAACAGAGAGAGGCTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATT ######<4<*;A@//)&+AA=@2759:<-/.2$%6((A7:);)7<)>9(@?=56,-)/:/><68*(9.'96.96?-+7:?>??@=8=?>>>?<++878=>><<==>=/=;>;>9?>?>?>>?>?>>>>>>>>>?>>=::>==>>>:>><>: MC:Z:151M MD:Z:2G14A15C2A28A85 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:5 MQ:i:60 OQ:Z:######A7A,7KA,,,,,KFAA7??>>=>=>===>=:>==>>9=>===>====>>>>>>>>>>>>>>>>>>>>>>>=>=>=>=>>>>>>>5>>?>???????>???>???>??8;????????@??@?=.<@@?=?@@=@?@7@@@=@/=*<;>??AAAA;4A@@>#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKK?>>>?>=>=>>>>>===<===8<=<========<======>==>>=>=>====>>=>=>=>==>=>>>=>?>>>>>>>>>>==>>=>>>=>>>=>>8=>>>>>>>>?9>9>>=?>?>??>>????>@@>????>@@@<@@?@?7;00;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKK7FAKKKKKKKKKKFKKKKFFFFKKKKKKKKFFFKFF@@@@@?@?@@@:>?>??????=9???????>>?>>>>>>>>>>>>;==>=>=>>=>>>=>?>>>>>>>>>>=>>>=>>>=>>;=>>>====>=======<==<=<=<==<======<=<====<======<===>>>?>>?>?:?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:KKKKKAKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFKFKKKKKKKKKKKF=>=:'0>=>>>*9/>>>>>>>>>>=>>>*003=0:2(>=7>3884)0==8:2<>>==<=1>======.**=)==;;<===<==:=====9;>=<>>=?>>>>?>?6=> MC:Z:151M MD:Z:27T6G4C7G31T31G39 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:7FF,<<<,<<,F,A7FA7F7<,,,,,FA,,AA<<,FA<7,,7FKFFA,,KKKKF,<7KKKKKKKKKAKKF<,,,,F,<,,KF7K=8>/'*059*>7.09>10=>%.(.*3><.>>>>>>>>>>>>>>>>>>>9>>8=<7.=>><:=<2.=>>=>>>>>=8.===8>==;>=============<=:====>>=<===>>>>>>??==@? MC:Z:151M MD:Z:24C7T5C10T4C96 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:#########################FA?=<>>>===>=>>>>;>>>>>>=>====>>>>=>=>=>=>-.<<>==>>>>>>>>>>>//8);;>;=>??>1?>;?>??39=<3.7.:<>?><>???@0:@4<0.<)14+@@@7/@############################# MC:Z:151M MD:Z:46T18C26C29T0C2C9T3C8T1 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:9 MQ:i:60 OQ:Z:AAFFFKFKAKFKKKKKKFKKFFKKKKKKKKKKKFKKFKKKKKKKKK,7FFFFAFKKKKKKKKKK,,7,?8@@@@@????<==??:????>?>?>?=>?>???>?@??????>>>==>>>=>>>=>>>=>>>;>>>>>>>>>=>==>=>=>=>>=>>>>>>=>=>>>>======<<+;====>=====<>=====<=>>?=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:7FKKKAA<77?;/%%(=??>7966)--0/%5@>80(????8<2.9/'+8'(>>=??;;>>>:<>>?>=>?=>+=2;,(;<8<7>>>?>><>>6>>>?>?>?>>?>?8>>====>>?>>>:=>>>>8>?>>>>@@=;;> MC:Z:109M42S MD:Z:7C33T27A60 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:###################F,KFF<((,,FKKF7A<7,,,7,(;>)/4A;83;).979.)7?????????@>;?@???@???>>????8<8@:???>?>?>?>?>?>>?>?>>?>>>>>>?>>>>>>>>>>>?>>>>?>>>>?>??>>>?>?>>?>>>?>?;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:######FFFKA<,7FFA,,,777,>?>>>>?>>>==>?>>>>>>==>>>>>>>>?>>>>>??>>>>>>>>>>=>>>>>>>>>>>>>>>>>???=>=>>>???????????????????????=?=?==6?72??@>@@A@@@?@=<;@@@?@@@@@@9:2@=<09;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFKKFKKKKKKKKKKKKKKKKKKKKKKKKFFKAF?6>:;;0>=?>?>>>>>>>>>>==<>:>=>=>>>=>>>>;3>>>=5<;5>=>>=>===>>=>9>>>;<>=8>>==>=====<==<===>==<=;:;;====<<=<<=<<8=>>=?>?=@> MC:Z:151M MD:Z:0G150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#KFF<<,A7<,7AAKKKF7AA7,,KA,FA??????????=?1=>?>?>?>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>=>>>>>>>>>>>>>>>>>><=====>>===><>=====>======>=============>>>>>?>?=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z::>@@@@:8*09&@>.??=???:00.*:*?>9>7>>=7>>><>=(,>==6>>=>><<==)>>>>>>>>>>>>=>>>=>=>>><><>>>>>>=>======>>==<>=>===>====;=>===============>>>>>?>?2?? MC:Z:100M51S MD:Z:66A84 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AFA7A>@>.141+=>?@@?:>90?=1'4401??????:?>?<=>>>3?<<0*>?>????<9=?>>>>>>>>>?>>?>=>>>>;>>>>>>>>=>>>><>=>>>>>>>====>>>==>=<>>=<==<==>==>??==>= MC:Z:20S56M75S MD:Z:30 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:3 OQ:Z:AFFAKA@==?>>>=>>>>>>====<==<=<=<=<<=<===<=>=>=>>=>>=><===<>>>=>>>=>>>>>>>>>>>>>>>=>>=>=>=>>=>>>>>>=>=>>>>=>>>=>>>???><>@??>??;???=??>??>??.<:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFK;;???>>>>>=>>>>>>>>>>>>>>>>><>>9>>>?>>>>>>>>>>>>>>>>>>>>>,<>>>>>>>?>>7>=>??>?????>,-:8)9?-*6.56>:>7>=*/7;>9>??@>/?=:=< MC:Z:151M MD:Z:87G9T35T17 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKFKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKFKKKKAFFFKKKKKKKKK,7@@?;@@>?>????>?>?;>*>''???><9???????>>>=>>>=>>>=>>>=>>><>>>>>>>>>=>=>>=><>=>>=><>>>>==3>=;>=>>>>>>==>>===>=====<>=====<==<==<;=<==<=<==>>>>>???>=> MC:Z:151M MD:Z:27T123 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:=?>>>>>>>=>>>>><>>>>>=>>>>??>>>>>>>>=;=>=>>>>>>>>><>:=<><>?;7:>>-<<=8=.=:????<<><=><??==?=69@@@@@>@>&72.9:@>>??A@@?@@@:<<7=? MC:Z:151M MD:Z:127T23 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFKFKKFFKKKKFFKAFFKFKKFAAFK,AFFAF7AAKKKKFFFFKAKFFFAFFKKKKFKFKKFKKF><:86?@@@2<>?>?><5)=??7>5>=0????>??>>>>=>>>=>>=*>>>>>>>>>>>>>=>=>>=>=>=>>=>9>>>;<<:>=9>=>>==>=93&<>======<==<=;:*;:<(<=<=<===>>>>>>>?>>A> MC:Z:151M MD:Z:101A28G20 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:??@A7<8/>??@?<<8.=>?-?=>8)???>8>=;<9>>>>>>;>?=>>>?>>>>>>??>>>?>?>>?>>>>>?>>?>?=>>>>>>>>?>@>>>:< MC:Z:151M MD:Z:5T5C14T33T90 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:4 MQ:i:60 OQ:Z:##############AA7,77<.-?@@,-7<@>@=@9<);)==A???:'7>=.=69'<678.=';>?==9?=>99=5)>(7=9>/(-4????>=;-8?>>>:?>9=(>>>?;>>>98<>?>>?>?>>>;>>>>>?>?>>?>>???;8< MC:Z:151M MD:Z:21C23T7C6T90 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:4 MQ:i:60 OQ:Z:###KFA,,,,7,AA,A7FA,,AFF,,7?@>?>>?>>>>>??>>=>>>>>>?>>>?>>>?=>>>>>>>>>>>?==>>>>>>>???>@??@?@??@???????9;9?.:9;@?@A>?@?;@&218<>@A.@#################### MC:Z:151M MD:Z:113T31C4A0 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFFFFKKKKKKKKKKKKKKKKKKKKFKA7AAFFFKKKKKKA;-7);-;=@@@@?????@:<->?>?@??>?@>?>?>>?=?=>>><>?>>>>>>>>>:>?>>>>?>>>>?>>?>>>?>?>>?>>>>>?>>?=?>>>>>>>>>?>?>>?>>>>>>>>>??@>?<> MC:Z:151M MD:Z:8T3T14C123 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:7FKAA7AA,<,<,AAKKKKKKKKKKAA,AKKKKKKFFAKFFKKKFAAKKKFK>>>>??>>>>>>>>>?<5>?>>>?>>>>=>>>>>>>?==>>>(=>;?-=>=>>?>8>7(3=>,=1.8=?>????<=:=??9;;:<6?@).)4%7:9:>.:<&26&&2.7<7.-<-?--99<@A@?=:?################# MC:Z:151M MD:Z:48T45T12T2A24T2T0C7T3 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:8 MQ:i:60 OQ:Z:>>>??==>>>>>>>>>>>>>>>>>>>>>>>>>>9>?;:>>>;=>>>>>>>>>>>>>>>>;>>??+;38>??;?<<>???<28???=99?=><<;>?5=9<.15>::>79::?/297?8*.?@################ MC:Z:151M MD:Z:71T63T2T8 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKKKFFKKKKKKKKKKKKKKKKFKKKK<>>>>>>>>>?===?>>>97=<>>>>><88>?=<>>=:>=>?>?>?>>5>5879'/-:;>?8/<=>>>==>>=>>;>;>>>>?>;??><=?@<<=<-0(<=(<=79??=?6.;?.>.>?7>==@-)06;@A@1>=<=?>>?>>>>=====;<<==<===<===<=====<=299==<<=<>>=>=>=>>=>>>=>>=>=>=>>=>>>6<>=>>>>=>?>>=>>=?>>>9>=>>=>>/<>=>>*<>?>????????>>?>?>;>?7=?9>85?@?>>0=;>59<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKAK,>>>>(7-&;=7>(7:--;>4,<4>>>?(&:+85+05=<7:097(89<-147############################################################################################ MC:Z:151M MD:Z:2T9A7A42T4A20G0C5A8A3A1A13A5 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:12 MQ:i:60 OQ:Z:A<,AFFAFFKKF,A,,AF7F,A<,,AKA,A;,@?)'2/8:6:;<:,.92=<=9')?>:9:6.%998(2.9;<9/4)/7<=,?72>?=;>>8=87>?=>>>;75=>;;>?>>>?=9<>=>>>>>?>><>?>>>>>>>>>?>?>>?=>??>;7< MC:Z:151M MD:Z:13A26T3A85 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:#######################KF>?>=<<==<===<===<=============>>=>>=>=>=>>=>8;>;=<>=>;=>=><99>><>>>><7;===<>=?>>>>>=>>=>?=>?:>?:;=>==??:>????>?>??>?????9;@@?@?@?83>@?@=?># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAFKAFFKKK7FKKKFAFKKFKKKKF7FFFKFKAKKKKKKFKKKKKAFKAFKAAFFFFKKAFKKKKKKFKKKKKKFK7AKKKFKKK77FKKKAA89;>?:?=;A@@@A@==-.=??????@?>/6.67?>@??9=9>@=?==@>?=;7>>>>>>>><8?>>>>?>;==?>>=>>?>>?>>>>=?8:?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>@>>?8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:KKKAFF7FAAKKKFKKAA,,FKKFKKKKFF77,A7KFKKFA==>>?>==>>====<===<===============<==<=<=<=>==>>>>>=>=>>>>=>>>=>>=>>>>>>?>>=>>>?>>>>>=>>=>>:>>=>>=>=>=>>>>>>>??>?>??>?=>=>;>??>?>?>?>??>?@@9:?@??>=;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK==>>?>==>>====<===<===============<==<=<=<=>==>>>>>=>=>>>>=>>>=>>=>>>>>>=>>>>>>=>>=>><>>=>>=9=>=>>>==>>:>>?=??>?==???>??>?>?>8>=?>?@@@>?@??>;;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKFKKKKKKKKKKKKAKKKKKK>>=<===<===<===============<=>=>=>=>>=><>>>8<<=7><==>><=>>=>=>8=>?>>=>>=?>>>>><>>9>>.;=>??>?>?>?????=???>?>??>??<=>?8=>9:<>9829@<@@@0;?<:67>@>;### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKK?=<=?=>>>=>==<===============<==<=<=<==<===>>==>=>>>>=>>>=>>=>>>>>>?>>=>>>?>>>>>=>>=>><>>=>>=>=>=>>:>>>>>>=>=??>:=???=>?>?;;>??>?*=?=?@?@@?@@@><;<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKAKKKKKKKKKKKKAFKKKFKFKKKKKA?=<=?=>=>=>==<=8=-<===80===8<<;=<=<=<=<<4<9=>===)715<:<><&;=':=<9=<7<>58407>-98>=%73<>/<6:=>=>=>6=*7'69;*8:>3:>=::.<>8)6==?>?;<2:?3**;07<>95;;@?###### MC:Z:151M MD:Z:61C20G18A49 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKFKFKKKKKAF,AKKK<7KKK7AKFKKKFKKKAK7FAFKKKF,A,7AAFKF,FF,AFFAFAAFKAA7,.?:@?@:>@??6-??=.9@?@?@??@?@==@???><7@;<8>>>>=>>>?>>>>?>>>=?>??>>>?>?>>>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>?>>?>???=?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:A7KKKAFKKKKFA,FAFFKAFKFK<,KKA,AKKKKKKKKKKFFKKKKFAAKAFAKKKKFKFKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1209:3640:46261 147 5 156355318 60 151M = 156355156 -313 ACAGAAAGAAATCCGTGGGGTGCATGTGCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAG #####################;7/?8@1>@?@?@?8=?@?*<0?>???<;=>*0???/.??;?>5.?=9:>=:>=<<;05=:>=>=>=>>>>>>>>>=>=><=>.>>>=<><=><=<>>==<>===>==<====<>==??>>>= MC:Z:151M MD:Z:14A4C7T123 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:#####################A<,@@<=>=;6:(=8>??:72'??>?>?>??=?=????>>:>>>>=>>>>>=:>>=>>>?>>>>>=?>><>>=>>=>>=8;<>><=:><>>>>>>>>>=>=>=======<<==<;<=<=<==<===<>==<====<>>=>>=>?>?8;> MC:Z:151M MD:Z:23T127 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKFKFAAFA>;>??>>>>>>>>>?>>>>><>>==8=8===>=>>>>====>>?>>>>>>>==>>>>>>>?=>>>>>?>>>>>>>>>;>3<>;>>>>>>=>9>>=>>>79:<>?<>?>;<89?<=<7=9===@@@@=->?)<>>>=)719< MC:Z:151M MD:Z:128T22 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKFKFKKFKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKFK7FKFKKKKKKFKAFKFKKKA?>??==>??????)?==>>?@?????>@?>>>>=>>=>>=>>=>>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=>>><>==<====#>=<==<====8======>?>?=<= MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#AFKFAAKF?>>>>=>=<=<=<==<======<=<====<===<==<==>>=>?>>=>>>?>>>>>=>>=>><>>=>>=>=>=>>>>>>>=>=>=>>=>>>>>==>>=>=>=>=>?>???=@??>?????@?>?=>????9>>>?2??@??><;;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKAFKFKKFAAAF7FKKKKKKKFF UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2116:13859:51377 99 5 156355338 60 151M = 156355623 436 TGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACA >?==??>>=>>==<=<==<======<=<====<===<==<====>>>>>=>>>?>>>>>=>><=><>>=>>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=????@??>?????@?>??>????:????@<@@>@@>><:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFKKAFKKKKKKFFFK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2211:25307:54752 163 5 156355347 60 151M = 156355413 217 AGAGAGAAGAGCAGGGATCCTGGANAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCTGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGG =>?===<======<=<====<#==<==<===>>>?>>=>>>>>><>>=>>;=>=>>=>=>;>>>>>>>>>=>:>>=>><=>==>>=?><5:=169==>05>?>????>@;;=?>??>=@?@+==>A8@@><9>? MC:Z:151M MD:Z:24A73A52 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKFFKKKKKKKKFKKKKKKKKKKKAKKKKKAFKFKKKKKKA<?>>>>>>>>>?>>>>?>>>>?:??>>>?>?>;?>>>>>?>>?>?>>>>>>>>>?>?>>??>>>=????@?>?@?>??@><>=5;?@?@>?@>@-:?@??>1:8:>@:7>??@@A@>@@=@8*8?2??>>=>>=======>==<===>=====<==<>=<=><===>=>=>>>>>>>>==>=>>=>>>>>>==>=>>:=>=>>=>>>>?>>=>>>>>?>=>>=>>>>9>???????>??>???>??>????>???>@?@A@@@@8@A>091=7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKFFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKA@==??>>>>>>>?>>>>?>>>>?>??>>>?>?>>?=6>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>=>>>>?>>>?;?>?>?>>?>?>>?@?>?>>9??????@???@?>?????;??>??@???@>@A@@A@?@@@>;9:6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKFKKKFKFKKKKKKKKKKKFFKA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2123:14235:45558 83 5 156355366 60 151M = 156355116 -401 CTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTAC ?:;<>?@?=@<>@????@?????;1???9>>>?=><6*<:;>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=>>==?>>=>>>>=?>=>>=>>>>8>>======<==<======<====<===<==<>==>==>>??=<<@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:??=>=<======>==<===>===>><=>=;>6<>=>><>;>=>>>>>>>>>=><>>=>>>>>><>>=><>=><>>=>>;:=>?>?????@-:??>?:.52:=??>?=?>??>??=?@?(7@@@?@@>?9;?A?A@*7AA8.;@90:># MC:Z:151M MD:Z:138T12 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKFK7FKKKKFKFKKKKKKKKKKKKKFKKKKKKKKKFKKFKAKKKFKKAKKF?>???>>>>>>>>>>>>>>=>?>======>>>><====>>>>>>>>>>>>>>><<>>>>>>77>-59<64<<9;==><<>>->>>/<>75;<9=>>>>>>>9>76<9>??8;-8=##### MC:Z:151M MD:Z:86A44T3A15 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFKKKKKKAAK,A??>?@@@@@?????>@?????>??>??;1<>??>?>>=>>>>>>>>>=>=>>=><><>==>>=>===>=>>=>>>=?>>=>>>>=?>=>>=>>>>9>>>=>>==<==<======<====<===<==<>===<<=>?>>=????>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKAKKKKKKKKKKKKKKKKFKKKKKKKF7FKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1115:23368:59798 163 5 156355374 60 151M = 156355455 232 CATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGT =;=>=?>9==>==<==<>=====<==<==:==<=>=>=>=>>>>>9>>>=><>>=9;>>>>=>>=>=>=>=>>=>=>>=>>>>>?==>>>????:>>???=?>>??>???>??>????>?<>>@>>A>@>@?@@8@?>>=@@@?<5># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKAKKKKKKKKFKKFKKKKKKKKKAFKKKKKKKKKKKKKKAKKKKKFKKKAFKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKFKKKKKKKKKFFKKKFKFFKKKKKKKKKKKKKKKKAAFKAFKFKAKKKF:6>9>??????>>>?>?>>?=>>,.>7.>>=?>>=;->=?>;<>>>>;;>==7<>9>?;5$89/><>>>>>?>>9;=;0==>?;>>=====>>>>=>>>=?>>>?>>>>@??>:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:###########A,AA,7,,7,<7A7,,A<,AAAA@??@)@:??:8?90(107=1=>?>?>>?=<>?>=>>(>72>;;;;/>=>>>=330>=*=<<0>=8>>>7>>;96><=<>><=:;.>->;9=>>7<4>=>==887?<2;2- MC:Z:151M MD:Z:0C9C2T7G8G2G1G115 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:7 MQ:i:60 OQ:Z:#######################################FAFKKF,FAKFA7F7,,<,9=@@?>@?@?????????@?@??@?>>:??????>?>@?>>>?>>>?>?>?>?>>?>;>>>?>>?>>9>>>><>?>>>?>><><>>>=>?>>?>>>>>>?>=>=><>?>>>?>>>>?>>???>>>? MC:Z:132M19S MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:#####FKKFFA77A????;?>?????????>?>??>??>9?>=??=>=>=>=>>=>>>=?>>=>>>>=?>=>>=><>>9>>>>>>>>=>>=>=>>>>=>>>>====<==<>===<<==>==<>====>==>>>?::= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:##A<<@?@???@?;<.>0=8?????>>>?>?>?>??<>???>>>>>:9>>=>=>=07>>>>><><;>>=:<>>>>>>>>>>====>=>?>>>><=>?>=>>==>>?<>><1;8<; MC:Z:151M MD:Z:4T11C134 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:#####################K.??=<;??>>;:??:;?????;8?>>?=>>;;>7>>>>>>>9>>>>>>>>=<>>>>>=>>9>>>>>>====>=?>>>>=>>?>>=?===>?>>>>>?>=<; MC:Z:151M MD:Z:7A0C7A1A132 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:4 MQ:i:60 OQ:Z:###################KFAA<7KA<<<7KKKKAAFFAFAKKKKKFKA,KFFF7FAFAA7KF7AKKKKKF7F??@??A@>???>??>??>?==>>?>????????>=>=>>=>>><>;=>>=>=>=>=>>=>>>=?>>=>>>>=?>=>>=>>>>9>>>>>>>>==>=>=>>==<====<===<==<>===<<==>==<>====?>>>==?=->@> MC:Z:151M MD:Z:147T3 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:9>@>;@9@;@@@@?????>?>??>?????;???=?>?>?>??=>>?=?>>=>>>>=>>=>>=>>>>6;7<>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>======>==<>=>==>=>==<>>@??>>= MC:Z:151M MD:Z:12C138 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:##KF7A;?93>>;?(&?>?(?????????=>???>>=><>><<>>>>>>>>>>=>>>>?>>>>>>>>===>>>>>>>9>>>>>>>>>>>>=======>===>=>=====>==;=<==>===>====>===>=>>????>?? MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:#KKKA7<7FF<,77AFAAA@>>>>>=>>===:>=====>6>6===<==<>>>>=>>>====>=<=>>>>>>><>=-><<:;<>>>>=>>-><>>>>>>49;;>>>%4>>>>>>>>6<>>>???;<:*>@?.5=28);-0:???=,>################ MC:Z:151M MD:Z:91A32T21T4 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:AA@>><==<==:85.>=2==9#<=<======>8><>=>;=>>>;=<=>>==4==7<>>=9>>8?<=;=>>>8<>=>>=>>><%><>>8>??>??>???><6272<6>===>>=?@??>=>?@@?@>A?@@@;=@@1=3:<*==@97;; MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AA>@>>>>>===<>=<>><>>=>=>==>====>>>=>=>>=>>>>>>>>>=>=>=<>>>=>>>>?>>=>>>>??????>????:????????>??????<@@??????@@@?@@9@@;@?<@@A/;:?=AA?AA?A/)*2AA@?;?8>? MC:Z:151M MD:Z:140T10 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFFKKKKKKKKKKF7FA?(<>>867:>=>>>>=>>>>>>=>>=>>:><8,3===>>:>;>><>>>,<>>>>>>>:<:>>>>>>?>??:..9;?:???????8.>?5=?<<).:=)7=.:./<=:7).8389@############################### MC:Z:40S111M MD:Z:37G60 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFF,AKKAA@9A@@@=@@8=;9=8>0)40??;@>?>?>??;???<=??????????>??>?>>>9>>>>>>>>>>>>>>>>>><>>>>>>>>>>>>?>>>><==>>=>?>>>>?=>>><>=>=>>>?>>??===; MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:##################AA,AAFFA7FKFKFKF<<7<<7<,,<,KKAFFFFFAKFAFKKFAKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKK<=??2<:*/8?<<:?;4;>:?????:???<<9>????>?>==>>>>>?>>?>?>>>>>>>>>?>?>=>>>>>=>;;4?>?>?>>>>?>>>?>?>?>?>>>>=>;=>==>><5>=====>>>>>>>>>=>>>>>?<>?==>=3> MC:Z:98M53S MD:Z:111 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AF7@7??>4;:?@**?;?7?????????>>=>?=????<;=>>=>=>=>:>>=>>==;>>=>>>>=?>=>>=>>=>9;>>>>>>>=>>=>>>>>>=>>>>=>=>===<>===<<==>==<>====>===<<==>===>?>=>>>??=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FFKKFF=1->=0);.&8??:2)<-72-)7)=8-).,)+).',--(-.$8-$0%*4((/;;>>>=9(>2,;9::97-(1(-5<.<(.';;8-0<>=<.0'=<-',):>=0= MC:Z:151M MD:Z:19G1A5 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:2 MQ:i:60 OQ:Z:################################FFKFFKFFF,F7??>>5?>.?;.8@5@????9?@??????>?>?==?>>;<5?>>@=37>;<8=>>>>>?>>>>>>><>=8>>?>>>>>;?>;?6*=>9<>>?><>>?>>?::>>?>>>7??>>>;?@>0>> MC:Z:151M MD:Z:17G133 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:7AFAA7AF<77A7A7,,,,,AKKKKKFA<9'1782;51)1<9?0+=8?/@?@??@;<<.16&;?>202<1?=??>?>80=*<&<90:>=>>=58<;(=2>>>=>>=>>>=>>>>>>3(0>>=><;->7:;:==>>=<:::9>>===<<==>==;<<8=<=<=;========,.959<<====269;==>9=<518=<&)).-<<=>>/9>?<=>>=%&'/4587)3*<;*-58>>68>;'69&':>6=>>??@???>;??6??<8<='&38=>>=>==<>>>>>=>>>=>>>====9=>==>>=>=>=>>>>>>>>=>>>=>>>>>=<8>>=>>>>9>?>>????>??>?????>>=?????>>>?@?@?@??2>/>9@9>'@=//?@>>9A///A?:AA>?0'2?AA####### MC:Z:151M MD:Z:150T0 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:>>9=>=>>>=>3===>>>>>>>==>>>>>>>>>>>>=8<>=>=>57>>;>>>>>?=>;;:>:?<<:?????<9???=>:???==>,=?@?@@@A@@@6'?9??@@<-<0?7@@@@AA@A:;::@A(0-.;:<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AAF,AAFKKAKKKKKKKFAKKFKKKKKKKKKKKKKKKKKKKKKFAFKFKFK7>:>>2>=>>:>>>>>>>==:<>>=>><<>><>>>>,1.<7>>>8=>>;>>;>7?;<>><>7'1+63<;05<=-*:?>:=.7=77=>??@@@?A>=<8:%..09@8>99>A1?>@<######### MC:Z:151M MD:Z:125T17 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:???@?@=9??>=?--806=9??@=89<:??>>?@;@?@>?>>:>?>;>?>>?<;0>>>>>>?>>>?>>5>>>>>>>?=>?>>>>>>?>>?>===>>>>?>>>>?==>====?>>==>>=>>==?>>>>>?>>???>>< MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:#AAFA77,A>??>?>>>>>>>>>?>?>>?====>>>>>?>?>?>>>>?>>>?>?>?>?=>?=>>>>?>>4=3:??????@>??@???>??????@??>>??;>@?A@@>?@@<=?@@A??@@A:A=@A60.@@@>>;89# MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFFKKKKK?==<=========<=<==<======<==<>=>=>=>><>>>>=>>>>>?<=>>=>>>79;;<>>>>>==>=>>>=>74<>>;=>??>???@???==?>9???@>???@????8@>A@?9)=<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKAKKKKKKKAKAAFKKKKKKFKKKKKKK7>?>=>>>>=>>=>=>==>=>>>>>>>>>=>=>>>>>>=>>>>?>>=>>>>>?>>>>=>>>>9>>>>>>=>>>>=>?>????????>???>???@???????@???@????@???<@>@A@@@?A@?@@@@@A@@A@AA@@A?>;868 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKAKKKKKKKKKKKKKKFKKKKKKKKKKFKKK< UQ:i:0 AS:i:151 +HK3T5CCXX160204:6:2106:15179:32461 147 5 156355407 60 151M = 156355386 -172 GGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACA ####@98@=.@>@@A<@@?A;=,@?899=?:1@@@@A@@?@?@?;??:=.?@=>>872>??????>>>><5>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>>>>?>>>>??>>>>>?>>=>=>>>>?>>?>;<9: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:####A<7A<,AKFKKAAKFAA<,KA0>?################################################################################################################################################## MC:Z:151M MD:Z:24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A<,FF################################################################################################################################################## UQ:i:0 AS:i:24 +HM3G2CCXX160308:2:2211:25307:54752 83 5 156355413 60 151M = 156355347 -217 AAAAAAAACGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGA ?;;=>@@:$?@?@?>??>*=74??>?>?>?:??>???>@??=>>>>=?>=>>=>>>>9>>>>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>>>==>>?>>=?>>=>?===<<==>====>=<=====<====>===>==>>>>>=??=<=> MC:Z:151M MD:Z:8A142 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKKKFA7,FKFFKFKFA,FA7KKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKKKFKFFFAA UQ:i:11 AS:i:146 +HK35MCCXX160204:6:1115:7304:33164 163 5 156355416 60 151M = 156355481 216 AAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAG <>=;=??>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>?>>?>?>>>?>>?>>7<>>=>>?>>>????>;??87?=??@<=?@?>?;7>0>??5??A=;;,<=@@??@>@@?@??=?<9??>?>?>?3??>???>??>>=?>=>>=>>>>9>>>>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>>>===>?>>=?>>>>?=>><<==>====>=<=====<====>===>=====>>>>>>?>?=A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKFKF>???==<==<===========<=>><===>>>;>>>=>>>>>?>=>>=>>>>9>>>>>>>>=>>=>>>=>>=?>??>???>???@???8>??@??>@>??<@????>??@@?@@A@?@@?@@?@8?:?A@@A@@@@A@A@AA:??9:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:@>?>?>=>>>>>>>>>>>>=>==>>>=====>>>>>>>>?>>=>>>>>>9>>>>>>><>>>>>>>>>>>>>=>=>>>=<>>?>>>>>>>?>>><>>>>@???==>?@????@??????????>*>4=::===<89==<=;='(2&1);:7==;>>>>>?9<1=<>=>.2;=>>)9>>=>>=><;=8>=>>>>=>>>3>=>?9<>=<>>???87;???77?;==?>=>???@?3;)))><;;@?A@@@A?*<(+5<=@A@@?@?>=:7= MC:Z:151M MD:Z:27A90C32 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAAFFF,F?;?>?>=>>>>==<==<=<=<=<==<====>==<=====>=<=>==>>>9=>>>;<>>=>>=>>>=>>=>>>>=>>>:=>>?>>>>=>>?>>>?=>>><>=>==>>?>>??@?>??>??>?>??@???@3>?>?>?>@@>@<@=?>197? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKFKFKFKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKAFFFAKK,A<>?>>=====<==<=<=<=<==<====>==<=>>>>?>=>>=>>>>9>>>>>>>>6<>=>>>=>>=>>>>=>>>;=<><>6=>=>>?>>>;;??@????@?>;?>=?>?=@><3>@>>@>9@?@?@@@@@@5?@>><=8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK=B+=.??@4<.2@??A>?(*A@>>.?@>==9)79=:91?@???@????????>>?>>>>?>>>?>>>>?>>?>>>>?>>>>??>>>>=?>>>>=?>=>?>>>>=>>=>>>>>?>?>>>?=>;:< MC:Z:151M MD:Z:7T143 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:78;@A@@@@@====/85?1945<.==<4933:??;85<@??>>??>>><>>;>?>>?>>>>>>?>>=:>>>?>>>?>><=?>>?5>>>?>>>5=>>>?>:-=>?>>>>>>>=;;4.=?==>?>;==>>=>>>>????>>= MC:Z:143M8S MD:Z:0T150 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AFA7F<<7KKKKKKAFAA<7<7F77<<<7FFAKFF77<.?@@@@@@A@@?@?>@<??@8(:??????@<1>8??????>78)=>>?>>>>>>?>>?>?>>?>>>?>>>>?>/?;-?>5>>>>??>>>=>?=8>=>9>>>?>>>>>==>>>>>>?>?>;<>=.>>>?>@??>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:AA,KKKK>?:<.>=5??@8=?@???6@?@?;?@=?@?<:?????>?>??@???>>>>>>>?>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>=>>?>>>>??>>>>=>==>>>?>>>?>=======>?>==>=>>>==>>>>>?>?>???>>< MC:Z:147M4S MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:#KFFKKFA<,FF-999-95''=..(':0'446;0+6&(-7('-5.4&-1<'4.:=',(,2(<7-(0<:+(<:*7)8.-;8?<################################################################## MC:Z:10S141M PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 OQ:Z:A@')/'6:??@?;=4&:>>==>><=?299)8)>>>?>>?68=8++>;68=8,69;?>>(:+>=>>:>==>>=><>*?>?>=>;8==<=8>>>?>>=<>?>><>@@=:?> MD:Z:92T48 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:1 OQ:Z:######################KKKAKFFFF,,,,7?>><==<====/9=3=====%8<=;<====9>>>>>>;>=)=3<<>=>><>;<>=>>><.<>:/<>>?>>>?=>>=?>>>>=>>????.8>>??>??>=>??@???@???>1<>>=?>=<;;@->*637>;@@A@5>869 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA?@@>@@@?7??>????>=?>??>>>??:????????=>>=>>>>>>=>>>>=>>>=>>=?>>>==>>?>>=?>>>>?=>>==>>?>>>>?>=>>>>><>=>>>===>============<=<==<<====<=>=?>>?=>?=>>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:7AKKKFKKKKKKK>>?>?>=>>>>>=><=>===>=<==<====8========<==<>>>=>>=>>>>=>>>=>>>?>>>>=>>?>>>?=>>>?>>>>=>>?>>>>?>=>>=>>=>=>>@???@???>?>?>????>?>??>??????@A@A@@A@@@@=<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1101:26504:57811 163 5 156355440 60 151M = 156355600 311 AGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATAAATACCTAA <:<>>?>=>>>=?>>=>==>>?>>>>>==>>9>>>>>=<>>>>>>>>>>:=>>>>=>>>=>>>?>>>;>>>?>???;>=>?>????@?@????@??????????@?@???@??????@?@;@@?@?@@;2>@@@=7=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFFFKFKKKFKKKKKKKKKKKKKKKKKKKKKAFKKFKKKKKKKAFKKKKFKKKFKKKKKKKAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKFKKKKA7AAFKFKKKF=@?@@A@A@A@A??@???>?@??@?>:?=<>??@???@???>>>>=>>?>>?>>>>>>?>>?>=>>?>>>?>>>>?>>?>=>=?>>>>??>>>>>?>>>>>?>>=?>>>>>>>==?===>=>==<======?>?>>?>>=??>>>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:FFF>@==AA@AA=A?=@>@@?@@@94<@>@?@@?>??>??????>>>??>???=??>@???>=>>@>>=?>>>>?>=>==>>?>>>>?>=>>>>>=>>>>?>>>?>>><>>><>>>>=>=========<=>=?==>=>=?=>>@??<;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:#FKKKAKF8>>?=><=<=2;>977:9=<====8===<===5;>==<>>=;=(;;==9>>>=<,:7<>><<>7:=4.'&787<>>>>:1=?>8).7*2<<>1=6=;2/8=??@???>=>?7??,:;???-/8*2-;??A@:@@;?@>89######### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA<>>?>>==<=====>=<==<====8===<:==>=>>=>>>=>>=>;>>=>>>=<<>?>>>8<>>?>>>?=>;>?>>>>=>>?>>>>;>=>?><=3=>?=<==?@???>?>?>?4??>?>?:/<=@669=;@A@@A?@@>?@AA@>2>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKAFKKKKK7FKKKKKKKKKFKKKKKKKKKKKKKKFKKKKKFF7FKKFFFFKKKKKKKKKKK7FFKKKK<,AFA77<1&*2$(($3?>5;>>(?.>8;=993>4(<(6=><3>><9&>3<.<(&7>>>8=>;:-=*=8=<=;8=<<=;>=<..>==7=<.76:<=.3.=9/49=(=,6=&:-(<=>=>==>>8=====>>>>>?=??>?; MC:Z:61M90S MD:Z:21C41T87 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:40 OQ:Z:########KKFF<,AAFKA,,((,,,7FA;>9-1(;A<:=1*:?7;;?@A@?><8>?>0*/944??>???>?><=???@>?>>*=?>>>><>=>>>>>=:;>:><>>?>;.<>;>8>?>>=?=8>=>2><><=>=>==<>7.-&==?>=>>?8>???>;>= MC:Z:151M MD:Z:10T122A17 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:##A?7;>A?A<>>3>82<:@@>?@@?@@@???>?>??>???>??>@???>>??@?=4@??>>=>>>==>=?>>>>?>=>>>>>=>>>=?=>>?>>=>>><>>>>>=>=>>==>=>><=?>>==>===><==>====>==?>??>?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAKKK?=?>?>>?>=>=<====8========<==<===<==<====<=>><>>>?>>>>=>>?>>>?=>>>?>>>>==>?>>>>?>#4==>>=>===?>>>?>>>=>=>=>>>>>?>??==<>>@?@??@???@>=?@?@@@A?@A?9=<;A MC:Z:151M MD:Z:82A68 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKK,7FKKKKKKAFKKKFKKKKKKKKKKKKFKKKKKFFFFAKKAKKKKKKKKKKKFAKKFKFKKFKK7FKK< UQ:i:11 AS:i:146 +HM3G2CCXX160308:2:1113:29751:2047 99 5 156355454 60 151M = 156355849 481 GAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATACAGGAGGGATGTACAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATGATAAATACCTAAGATAATAATTAATG >=>>=?><99<><5===8;=,9;===<==<===<==':;=5)==><.,88%19/<;=?>>=?=6<>?>>><928<;>>>;>=>>=<>=6/;:7>:/?>>=;9=<9>>8>=4:<50)829,:>5>-8>7;?/6'626<;*/7??A=/?;;;; MC:Z:65S86M MD:Z:36C13A73A13C12 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKF@??>??????>????>?>>=>>=?>>>==>>?>>=?>>>>?>>>==>>?>>>>?>=>>>>>=>>>>?>>>?>>>>>>>>>=>><=<==<<====<=>=>==>===>===>====>>>?>>>@??<=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AKKKKFFAKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2221:26098:66390 147 5 156355455 60 151M = 156355316 -290 AGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATNAATACCTAAGCTAATAATTAATGA @8;==>@9@@@@@?<:>@>@@@@@???>??????>????>???>??>>?>7?<>?>>>><>>>==>>?>>>>?>=>><>>=>>=>?>>>6>>>>>>><>>>>=>=>;==>>>=<=>=>===#==;===>====>==>==>@??;<= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:7KAFKFA<@>=>>=>===8========<==<===<==<====<===<=>>><=>>?>>>?=>>>?>>>>=>>;>>=>?>=>>=>>=>=>>?>>>?>>>=>=>=>>>>=>*????>?@???@????A@@A<@>:>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKAKFKKKKFKKKKKKKKKKKKKKKKKKAKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,AKFKKKKKKKKKFKKKKKFKKKKKKKKKKKKKFF7@A>@<<@???>>@=:@4<=??;;>5@?<=?@???@????@>>;;8=>;>>>>>?>>>>>?>>=?>?>>>=>>7;=;.,>?>>>?>?>:>>?>>>>?>?>>>+>>?;>??>?>??>>?>>>?>>>>>><>>>>?>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FKFA<77>=<===<==<====<===<===>====<>>?>>>?=>>>?>>>>=>>?>>>>?>=>>=>>=>=>>?>>><>>>=>=>=>>>>=>=>??>????>?@?@?>=???@>??@????@??@:??A@@@?@?@@@?@?@A@@@@@=;:8: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKFKKAKFKKKKKKFKKKKKKKKKKKKKKFKKA UQ:i:0 AS:i:151 +HK35NCCXX160204:1:2120:30705:65335 147 7 4490610 60 151M = 4490477 -284 TCTCTGGGATCAAGCGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGA #8=:>?@@@@@AA@;@<@@@?>@@?@@@@@@@@?>?@???@@???????????@??@?:?==??=??=?=>?>>>??>>?>>>>?>>>>>??>??>>>>>>>?>=>>>>>?>?>>>>>>>>>>>>>>=>==>>=><>>>>>>>=>??;=;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:#F?=>?????????????>?>==<=>>>>>>>=<='=><>>>>>=>>>><>>?>>>?>>>>?>>>>>?>=?>>>=>>>=>===>=>>>==<============<<=<=====<======>=>>>=?>?=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:?????@?????????????>>?>9>>>>>>>>>>>>>>>>?>>>?>>>>?>>>>>?>>?>>>>>>>>>>=>>>>>>=====>>===>=>===<=<=====<=======<======>=>>=???=>?>>>>=?>>>>>>>?>=>>>>>>>>>>>>>?>9>>>>>>>>>>>?><>??<>>?>>>>>>>>>>@??????8>????<<<@??@@????????>;?6???@@?=;97? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAKFKKKKKFKKKKKKKKKKKK=>:?=:7=5<=;=51===9<=53;===.:8=5:>>=;>=;0>;>>=7&=<'=>8;?<8//<79<:>>><7:<=>=<>><8=;):==>><>;>>?>?>=9>=???>?;==??=?%09;>0;>>>*2*9@?8>@=9@<;29;>######## MC:Z:151M MD:Z:49A65T35 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:0/)/..'.(<:<<=>2'8=38=>=<3%(<%,0><(*$+-79>--;(,,,8-7<98(2($$0(($1+%;:3;>><:<>####################################################################### MC:Z:19S132M MD:Z:5A3G29T3T4T9A2G0T3A1T20G1T3A3T12T15G2T5A1T5G5 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:20 MQ:i:60 OQ:Z:,AF,,,<7,,,,AFFAKF7,7FAKKKKF7,,A,,?=>?@>>>>>><<==<====><8==<==<==<=<=====>===?>=>>?>>>>>?>>?>>>>>>>=>:<>>=>><=>>>>>>>>>>>>>>>=>=<=>=>=>>>>>>>=>????>?>??>????=?>???3*>?@@=@?@<=;9;<@A(AA>AA?@?@AAAA@@:@A?@>=?@:;>@@@@@A@@@@?>>>@?>???@??@?=??>??=>?>?????>??>>>>>9>><>>>4>>>=>>>=>=>>>>>>>=>>>>>>>=>=6==>=>>>>>>>=>>>=>===>>>>>>??>=8; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:A<:=>?@@@@?@@@????@?:??>?><>?@=>>>?><<>>?>>?>>>>>>>=>>=>>=8>?>>;><><>>>>>>>>>===>>>>>=<>===========<====<;:========9:=====5=====>>>>>??>;@? MC:Z:60M91S MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:24 OQ:Z:<?>8.)6;1/184<:?=>967<97).)7?==?<<7@>>>>=,>?7?=>>?=>>>>>>>>>>;>>>>>>9;;>>>>>>>>>>>;=;5;,=6<,8)?>>>><2==>>;>>>>>>====8==?>>=====>>>=>>>>>>>>>?=5>;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:#####KKF<,,<@?@@@@@@:0@?:??????????>>????@???@?????>>>>>?>=?>>>=>>>=>==>>>>>?>>=>=>>>>>>>>>>==>=>>>>==>>>>>>>=>>>==<===><>=====<=====<======<====>>=>>>?>?<@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:??>=>===>==?<8==<==<==<=<==>>>?>>>?>>>>?>>>>>?>>5>>>>>>>=>>=>>>>>?>>>>>?>?????????>?>???>?>???????>?????>?>??>?@?@@A?@@@@@?@>@@@@@@@AAA@@AAA@A@=>86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKFKFAFKFKKAKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:8:2202:10805:40530 99 7 4490671 60 151M = 4490699 179 ACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCT 99;?>>>?>>>??>>>?>>>>>=====>>>>>>>>====;,98?>>?=7>>>>>>>>>>=?>>>>==<>>>=>>>>>>>?>>>>>>>>>>?>>?>>>?>9>??@=<1->>????@??==>?????>;9>>=@@@>@?;@1%+/768:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:?@@A<.<7/=96,.3-/(<9=>/88-5/9<-<><7??9>><(7?=>>;2>>;;;<-3>><87->?628->>91,959:>>>;>>>>>>9>>>>:<>>;>575;71;<<+579- MC:Z:151M MD:Z:14T2T9T123 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:##A7AA>1AA8<>@A@@A@@@@?;?@@@A@?@@@@?@@7>?>>?@???@=?>????????????>>?>??9??>??>?>>>=>>>=>=>=>>=>>>>>>=>>>>>=>>>>>>=>>>>>>=>>===>===<><======8<=====>?>?><= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:##KAAA,FF=8AAAA@>?A@?A/?/A@?A@@@;>??>?>>?????@>>;????????????>>?>>=6<>=<==<>>>=>>>=>=>=>>=>>>>>>=>>>;<=>>>>>>=>>>>>>==>>==>===<=<=<====8<======><=?9>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:##A,A?>@???????@?@?????>?>>>>>>>>>>>>>>>>>>?>>>>>>>?>>>>>>>>>>>>=>>>?>;>>>>>>>?>>>>>>====>>>?=>>=======>>9>>>>>>>>>>>>>?>???<>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:7AFFKFKKKKKFKKKKKKKKKKKFKKKAFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2223:17198:11418 163 7 4490683 60 151M = 4490785 253 GCTAATTATTTTATTTTTAGTAGGCTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTT =;==>=>>====7=====>==>==,9<;;7=;<=>>>=?>>>>>>>7>>=<>>>>=>=;<>=>=>>>>>><<>8==>=>=>>=>>>>>>=>>???>???36<=??>=??>>>?>??>??>?><=>:<@;???>@?@?>A?>:@@??>9:8? MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFAFKFKKKAKKKKKKKKKKK77FAAAKFKKKKKFKKKKKKKKAKKFFKKKKKKKFFKKKKKKKKKK?@@@>>A>@?;>@???@??@@?@??????????@????@>>>>5?>>>?>>>?>>>?>>>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>==>>9>>>>?>>>>?>>>?>>>@>?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:KFAFFKFKFAAKAKF@>=A<>9.@@@A@AA?@@?@@@A@@?@????>@??????????>>=?>>??>>>>>>>>>>>=>><>>>>>>>?>>>>>>>>>>>>>?>>>>>>>==>>>9>>>>==>>>>>>>?>>>@>>=>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:FA7<7A>?@>@:A@?A@?>@@@<=@@??>>?????@??<>????????>??>>?=???:?9>>>>>>>=>>>=>=>=>>;>>>>>>=>>>>><>>>>>>=>>>>7>=>>>>>>=>;=>==<====8<=#=======<====<==<=>?>==?, MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKAFFKFF>>?@?>?>>>>>??>??>>>>>>>?>>>?>>????>>>>>>>>>>?>>>>?>>??>?>>>?>>>?>>>=>>>>>>?>>?>>>?>>?>?>?@@@?==@?=?>?????@????????=??28????@?@@@A2@7?:@>?>@@?><;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKFKKFKKKKKKKKKKKKFFKKFKFKKKKKKFKKKKKKKFKK7FKKKKKKKKKK7F7FAFAFAKKKFFAFK UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2124:30391:27521 99 7 4490689 60 151M = 4490851 313 TATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAA >?>????>>>>>>==>=======<==<=====>===============><=<==><=<=>>>>>>=>>>>>=>=>>=>>>>>>=>>>>>=>>>>>>;>>>>>><>>>>>>=<>??=?>??>?:????@????@>?>=@?@@?@>/>?<;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKFKFKKKKKFKKKKKKKKKKKKKKKFKKKKFFF;;=:?@@?@>@?@???>???>?>>?????@??>???????>>>>>==>=>>>>>=>>>>>>>=>>>=>=>=>>=>>>>>>=>>>>>=>>>>>>=>>>>>>=>>=>>=<==<=<=<====8<=========<====<===>>>>????>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:5:1119:17523:28576 147 7 4490692 60 12S139M = 4490536 -295 CCTGGCTATTTATTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGA ############A>-./>@?=A@@A@@@@@@@A@@>A@@A@=@<=@@=?>8??@????@????=@???=???@?>-@????>?@>4=6=7=8>?<78;>>>>>?>>>?>>>>>=>>>?>>>>>>>>>>>>9>>>>?>>>>?>>>?=>?>;< MC:Z:151M MD:Z:139 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:############KA,,,??@AA@@@@>@?>@@?@??@@?@??????????@????@????=@??>?>>>?>>>?>>>>>>?>>?>>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>>>9>>>>?====>>>>?>>>>>>>>>?>>>>>@@?>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:7AA,FF@A57A>@@@7>:=/=1@??@??@??;>=??>??@>???@????;@=?>?>?>?>>>?>=>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>>>9>>>>?>>>>?>>>?>>>?>>>>>?>>>>>@??>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:#A7FKKF<7FFKKF7FA<7A7KKKKFKKKFFFFKKFKKKFKKKKKKKKAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:2218:31223:52309 147 7 4490697 60 75S76M = 4490207 -566 GGCGCACCTCCTGCCTTGGCCTGCAGAGTCGCTGTGAGCACCGGTGCGCGCCACCACAGTGGCGGATTGTTGTGCTTTTAGTAGGGTTGGAGTGCTGCTAAGGTGCCCATGCTGGTCTCACACTCCAGGGCTCGAGTGATCGTCCTGCCTC ###########################################################################>;/>5>?>>>;;0;9/68&*>=*<::&$03*3*.0=1><6/:=+-);2>98=%9=1/%'9;/=>9,%/**0::606 MC:Z:151M MD:Z:18C8T17A12A7C9 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:###########################################################################A<,F7KKKKKFA,FA,A7,,FF,A<7,(,<,7,,,F7KFA,AF7,,<7FA;?@;@>?<*?????@??>?=??????????>>?=>>>>>=>>>>>>>=>>>=>=>=>>=>>>>>>=>?>>>=>>>>>>=>>=>>>=>>>>>>=>>===><====8<;========<====<==<====>==>>>?>>??<=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKFFKKAKKKF,KKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:8:2202:10805:40530 147 7 4490699 60 151M = 4490671 -179 TTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTAT =<8:>@<@@@=9:AAA>AA>8@A;:.>@@@@@@@@@3@@@@@@>7=8??@???????@???>??????>??????>????>??>?:>>>>>>>>>>>>?>>>>>>>>>>>>9>>>>>>>>==>>>?>>>?=====?>>=>=?>>>@< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:KAKKKKFKKKF<@@@??>>?????@??>????????????>>?>>>>>>=>>><>=>=>>>=>=>=>>=>>>>>>=>>=>>=>>>>>>=>>=>>>=>>>>>>=>>=><>=====8<=========<====<==<====>===>>?>>>?<><@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKAAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:6:1206:11941:31986 99 7 4490700 60 151M = 4490828 279 TAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATG =>=>??>>>>>><==<=====>=============>=><><==>=>=>>>>>>>=>=>>>=>=>>=>>>>>>=>>=>>=>>>>>>>>>>>>>=>>>>>>=>>>>=>=??>?:????????=?=????>??>?.@?@@@@:@A@@@?>=:## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKK,FKKKKK7FKKKKKFFF## UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2118:19350:53715 99 7 4490703 60 151M = 4491013 461 TAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTC >;>???>>>=>><=====>================<=<===<=<>>=>>>>=>>>>>=>=>>=>>>>>>=>>>>>=<>>>>>>>>>>>>=>>>>>>=>>>>=>=>>=>9>?????????>??=????@?????A@@@=?@@>=;<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKKKKKFAKKKKKFA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:2118:3234:9730 163 7 4490704 60 151M = 4490953 400 AGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCACGGAAGATTTTAAAAATAAAAGTTATGTTCC ;:<=>?>>=>-==>=>=?>>=>>>>>>>=>===99>>><>>>>>>>>>>>>>>>>>9.=8>>>>=><:>>:5>>?==??>?=???>??>8.;>??>>?>*;.;>>=?6>=:>@=4;;1=:''+@?4@/9/>;0@A@=BA############ MC:Z:151M MD:Z:120A30 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKK,FKFKKKKKKKFKKKKKKKKKKK?==>??>>??>?>>>>>>>>>>?>>>>?>>>>>?>>>?>>>?>>>?>>>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>??:????@????@???@???@?????@?????@@@@A@@A@@@@@@A?7<98= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKK?@@@@@?@??????=????>>?>???=?>???????=>>>=>=>=>>=>>9>>><>>>=>=>>=>>>=>>>>>>=>>>>>>=>>=>=<=>>>>7=>9,=;>><;<====<=;:===<5=====>====<=>==<>=>>><>?=;=; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKAKKKKKKKKKKKKKKKKFKFKFFKAKKKFKKKFFKKKFKKKKKKFKKKKKKKKKKKKKKKKAKKKKKFKKA,FFKKAAKKKKKKK7AKKKF3?;.<6@@?@?=>>?5:=0/'.6>4&0.9(=??@???@???:;;-?=?=8??>1;>&(,'9>>870>>>89>=>?>>4?>>??>>>8>>>;>=;?>??><>>>(>->8>>68/?<<< MC:Z:151M MD:Z:5A5C15A2C23C83C12 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:6 MQ:i:60 OQ:Z:##A7A,,AA7,,,<<,,AA,,7<,A,A,<,,A::<>?@A@@@@@@???>?>?>?7>5?>???????>???????>>>=>>>>>>=>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>>>>=>>>>9>>>>>>>===<==>>===>=>==>==;==>======>====<=====>>>>>?>?>?? MC:Z:151M MD:Z:136C14 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:FKFKKKKFKKKKKKKKKFKKKKF7A7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKK52??>??@?<<;;<>>>>:989<)/;>>>>>?>>=;7)>>8>>>9>;<<>>3><0=93=>>><)6>>>;===>>?>>>?:>>=>-><>;=>>==6>;>=>>><>?=?>9= MC:Z:107M44S MD:Z:1G16A110C21 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:3 MQ:i:60 OQ:Z:>>>>=>>>>>=>>>><>>>>>>>>=>>>>>>=;>>>=>=>>=>9>><>>>>>>>=????>??>?>?=????>>?:;??@>@@@?@@@@@@>@@@39;5<> MC:Z:151M MD:Z:123C24C2 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKFKKKKKFKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKFAFKK>:?=>/;(?@?@:6'?>???>?=?????>>>>??8>>=>>=>>>=><=:<>=>>>>>>=>>=>=>=>>>>9=>>>>>>>>>=>>>>=>><==>=?=>>=>?=>==<=>==<=<====<<=<===<==>>>>>>>==??>=@> MC:Z:44S24M83S MD:Z:3T119C27 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:2 MQ:i:0 OQ:Z:#####KK>@>>??>?>>;=<>>==>>?>=;>>>?>>?>>>?>>/=>;8<>>???>>>?>>=>6>>?>=-8??=?55?7394>==89>>>??>?@:??.)=-6<@<=6>8<79;,87?@?<*.8/8.81@>/888:@####### MC:Z:151M MD:Z:120C7T19A2 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKAFFKKAFKFKKFAKKKKKKKKKKKKK7FK>:@A@>@A>@@A@@??=?@?9@???@???=498?????@???@????>>>>>?>>>>>>>>>>>>9>>>=99>>>?>>>?>>>?>>>>>?>>>>>?>>>?>>?>>>>>>=7>>>>>><>>>>;>>>>>?>7>>>>?>>?@==?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:#KKKFFAAKKKFKKAKKKKKKKAKKFAKKKKKFKFF>>>>===<=======<==<======<=====<==========>>>=>>>>>>=>>>>=>=>>=>9>>>>>>5<>>=>>>>=>>=>>>>?>>>>>?>>>>>>?>>??>??????>@??9??@?@@@@A@??<<?>?>??>??????>?????>????>>=>>>>>>=>>>>>>=>>=>=>=>>>>9=>>>>>>>>>=>>>>=>>=>>>>?>>>>>?>>>><>?==<=<====<==<===<=========<<====>=>?>>>?>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1114:6289:10345 83 7 4490741 60 151M = 4490372 -520 AAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAG =><=?<@A<@@@?@???@??>???????????>???>???????>>>>>>>>>>>>>>>>>>>>=>>>>9>>>>>>>>>>=>>>>>>>>>>>>?>>>>>?======?>=====>====================<=====>>?>>??>>@? MC:Z:151M MD:Z:113C37 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AA<>???>=>>>>=<=<==<======<=====<===<========><=>>>>><>>>>=>=>>=>9>>>>>>>>>>=>>>><>>=>>>>?>>>>>?>>>>=>?>>;>=>>>?>??=>??>???=?>???>>??>??;?@@@?@6?@??=9>?@;@@@@>?????3???>??>?=????>??????>>>=>=:=>>>>9=>>>>>>>>>=>>>>=>>=>>>>?>>>>>?>>>>=>?=55>=>>>>==>=>=><=========<<=====<=>==<=<==<==<===>=>>>?>?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKAAFFAKKKFKKKKKF7KKFFKKKKFKKKKKKKKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF@6<=@1;@4?????;<=????=>>=?=>?=>?>?>?=>>>>9=>>>>><>>>:;=>>=>>=>>>>?>>>>>?>>>>=>?>>=>=>>>>=>>=>>>=>>>=>>===<<=====<=8==<=<==<==<==<=<===>>>>>>?=>=?> MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#KKKFF7AFA7>>-8;@7@=@@@@:><89:??@?????8?>@>@@;???9)??>?>???@???@>>>??@??>>?>?>;?>>@?>>>>>>>>>>>>>>>>>>>>>>>>?>>>>>>?>>??>>?>>?>?>>>>>>>>>>?==>>>>>>?==;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:#KKF7A?@@>@@@@@?;???>??????>??>?>6>????8=>>><<>>>>=<>>>=>>=>>>>?>>>>>?>>>>=>?>>=>=>>>>=>>=>>>=>>>>>>>>========<=>==<=<==<==<==<=<========>>>==>?>?=@> MC:Z:151M MD:Z:85C65 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AF>>>>?>>>?>>>>=>>>=?>>>>>>>>>>:<6>>>;<>>>>?>>>?>>>?>5+8>@????,:?:>@=>?7????@,5<7-=<;4>=79?(;'.-3;<>################ MC:Z:151M MD:Z:81C68T0 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKFFFKKKFAKKKKKKKKKKKKKK7,?<9:A9<<@3;;<@4=@@@>?:?4*4?>?>>>=<:?>4==)8<>>=>><>>>>=>;>>=>=>>:>=>;9<9>==>;>>>>>>=<=<<>>==;>7=>=<><==<==(<4<<;=8======<<=<===>?=43;= MC:Z:151M MD:Z:80C70 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:77<@??<@??=@@@?????@???@?@@???@?>@??????@@??>?>??>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>??>?=<=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:#######FA77,KFAAAKKKFFKKF<7<7FFKFFF7,AA7KKKKFAKKKAKKFAKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1111:14154:56458 147 7 4490781 60 151M = 4490402 -530 AAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCT ??::>?@@@@@@?>?@@?@@?@?@?????:>=>???9???>??>9>??>????<==>???>>>>=>7>>=>=>>>>=>>=>>>=>>><>;=<>==>>>>><=?>>=>=>>=>>=>>==<===========<===<=<==>=<===@>?=>= MC:Z:151M MD:Z:73C77 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FAFFKFKKKKKFFFFFKKKKKKKFKKKKKKKFFKKKAKKFKKKFAKKKKKKKKFAFFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKFKFFAKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYN2CCXX160123:1:1108:11140:31054 147 7 4490782 60 151M = 4490536 -397 AAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTT ##49<7=+@A??A@@B@@AA@A@?@A@@9@?<6A@@@@??;@@@@@A@?@@@@?????@???@?@@???@??@??????@@???????>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>??>>>>??==<== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:##AKF<<,KKAAKFKKKKKKFKFAKKKKFKFA<=;*0*-??>9=9:>@=5???>?>?9;9?>????@<;8>?@??<==>?>>==1>>>>:><6<>>5>>>><<9<>===><>==>?>>=>=>>=>7=>==>=>>=1=======<===<=<=<>=<8;<><=>?>;@@@<>??=?6>=:)>?>>>=>>>>?>>>>>?>><;=>?>>=>=>=>7=>>=>>>=>>>>=<>=>==><<=>=>?>><>==>===<=;<=<===><5=<===<===<=<==>=<=>=?>>7?>=;?> MC:Z:151M MD:Z:69C80C0 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:?@@@@A@@@@@?@?????:????>?;??????@>>?>>?>>>>>;>>>;>>>>=>>>>>>>>>>?:>>>=>?>>??>>?>>?>?>>>>===>>>?>>>>>==>=>=>>=>>?>==>>>=>>>>?=?>;= MC:Z:151M MD:Z:67C80C2 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:2 MQ:i:60 OQ:Z:<>???>>>=>>>>==<==<=8==========<====>=><>>=>?=>=>=>=>>>>>?>>>>=>>>>=>>>>>>=>>>>>=>>>>=>>=>>=>?>>=>=>>=>>=>?=>>><>????=???>>??>?>??@???@@@@@@>7<9>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKFKKKKKFKKKKKKKKKKKKKKFKKKAKKFKKKFKFKKAF UQ:i:0 AS:i:151 +HK35NCCXX160204:2:2218:17777:18010 147 7 4490792 60 151M = 4490536 -407 ATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATA :68;>@=@AAA=8@@A@@:@@;8A@@@;?@@@A@@@A@????@?????@???@??@?????@?????????????>??>???><>>>>?>>>?>>?>>?>?>>>>>?>>>>>>>>>>>>>>?>>?>>>??>>>>?>>>?>>>>>>??;=>< MC:Z:151M MD:Z:62C80C7 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:2 MQ:i:60 OQ:Z:7KKKKFAKKKKA7?@@?@@@?7@@?9?@@?@>:??>>????>??>>*??@?>9??@????>?@??>?=>>>>=>>==<>=>=>9;>>>===>>>>>=>=>=>>=>>=<>3====>=>>>>>>=<===<=<==>=<==<>======<=8==???;@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AKKKKKKKKKKKK7KKAFKKKAKFAKKFKKAKKKKKFA,KKKKF7KKKKKKKKKKKKKKKKKKKKKKKFFKKKFKAAKKKFKKKKKKKKFKKKKKKKKKKKKAK7FKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1112:27407:17149 83 7 4490794 60 151M = 4490450 -495 TGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGA =;;=9?@=??@?>@?=9<=>==:$???>????>??>????<>>>:>?>>>>=>?=>=>=>>>;=>>=>><=>>>>>>>>=:==:8>>==?>>=>=>=:>>==.===>==========<<==<=<==>=<==<>========9>=1>?=>:> MC:Z:132M19S MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKK?>>9=>><9=>>?>9>44*4>>>>,><>>?,4+,=>4=>?>>>(=6>,8>6<8/>6>;969;?5?@?><==>@7>@?@=>?<>??=:->9???????7@@??######################################### MC:Z:151M MD:Z:51T72T12T4A8 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKK?+?;%A@A@AAB@?@@?@@?:8@@@@:A@@?@>?@?@>@>????>??>???>?????????>>?????>???>=>=>>=>>=>>>>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>====<===<===>=<>>=>=>=?>???>?: MC:Z:151M MD:Z:46C80C23 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:##AFKF,A7(KFKKKKFKKKKKFA<77KKKF7KKKKKKKKKFKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFA< UQ:i:84 AS:i:141 +HJYFJCCXX160204:6:2204:12236:71699 147 7 4490810 60 151M = 4490569 -392 CGTGCCTGGCCTCAAGGAAGATTGTAAAAATAAAAGTTATGTTCTTGGNTGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGG 75;9=?@8(*@?=@A;?@@>@=/&A@@@@@A@@@@>?@??>?>???=?#?;???>?????????>>>??>>=>?>>=>=>>=>>=>>=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>>>=><>>=<=>=>=9=>=====?==?>??>9< MC:Z:151M MD:Z:23T20C3A76C25 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:FF;?9<599(-->97>*<->))?=>7<=0),96<67=5/%((/39.)-//1>5<>4>2.8)+<7;4-=-,0)0<+5<>5-3+7+>>(5>+5;<.*+*50; MC:Z:151M MD:Z:7T7G11A2A1T7C0T3T16C37T11T24T13 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:12 MQ:i:60 OQ:Z:##############################################A,7KKFF;?>>?>>>>>?>>>>>?>>=>>>?>>>>>?>>>>>><;>>>6>>>>;>>?==>>:>?>>??>>?>>?>?>>>>>?>>>>?><><>>>>;???=><<@@;=?=>;=8=,5=?:>?????)=-:;77.7@?;,.<-)((7?;6773 MC:Z:151M MD:Z:36C80C33 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:AAFAFKAKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKFAFKK7FKKKFKKKFFKKFKKKKKKKKKFKKKKKKKKKKKKKKKKFKFKKKFFFKKFFAAKKAFKFFFFAA,+/89<->?6+4;(-,9,*5+(''$58+5=5>5).77,($&,(4-,9>';&>,(,1-,&:@?;@@'''6:=:=).:7)/)>>>98??&=############################################################ MC:Z:151M MD:Z:15T7A0A0A13A0T1T1T23A30A1T8C5C9T5T15C2 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:16 MQ:i:60 OQ:Z:AA<,,>@@?98-.;6))>:07(2>;:0?<9=?>>=6@??=8<867659=<9/>>>>>>=>>;>>::>>??>>>9>>4>>??>>?>>>>>>>>?>>>>>==7=?=>6;= MC:Z:151M MD:Z:2T6A12A9T18A4T94 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:6 MQ:i:60 OQ:Z:######################################AAAKKF7<,,<<,,F<,<,7FAA,KA>?>??><>=>=>>==>=>======>===>==>>>==>>>>>=>>>>>;>>>>0><5>>=>?>=>>=>>=>><;(<<>>??3<>>>>>??>????@<==??6399?9=@/:<9@@@@@@/8?::@0@:0>??0+5>AB6@@?7;5>< MC:Z:151M MD:Z:32C80C37 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFFFKAKKKKKKKKFKKKKKKKKKKKKKKAFKKKFKKKKKKKKKKKFFFKF7FAAKKKKKKFFFKKKKKKAAFK7,AAFFKK?@A>>BAA><@?>?;?@@@@@@?@@?@@@@@?????????????@??????@??@@??@??@?@????>@>>>?>>?>>>??>>>>?>>>?>=>>9>>>>>??>>?>>>>>?>>?>>>>>>>?>>>>9>?>><<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKF<>>>=>>>====?======>=>>=<>>>>=>>>>>>=7>>>>=>>>>=>>=>>=>?>>=>=>>=>>=:==>=>>>>>>>?>>>>>????;><@??>>-<6<=???>>:?@<@@@@??A?@?@@><@@A@=@@A?@555?:<9=:75? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKFKKKFK?>???>>>?>>==>>=>====>====<====<======<====>=>>>>=>>=>>=>?>>=>=>>=>>=>>=>=>>>>>>>>>>>==>>=>=>>?>>>>>?=>>>?>=<>?>???@?>?@??=??@??@????@@@@=@@@;@@?>;::? MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:A?>>>?>>>>>>>>>>=>?>>>>=?>=>>><>=>>>>>>>>>>>>>>>>>>>>>?>>>>>>>>>><>>>@?>???>????????@??????@?????@???@==;?9=??@@A>@@A@?@@@A@>>@@@7=>=9??@;=86= MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFAFAFKKKFKFKFKKKKKKKKAAKKF???>>>?>====>======>=========<====>=====>>======>>>>>=>?>>=>=>>=>>=>>>>>>>>>>>>>>>>=>>>=>>>>?>>>>>?>>>>>?>???>???@?>?@????>@??@?@?<8??@@@@@;@@?>=;:> MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKFKFFA78;>?AAAAAAAAA:A?@A@@?@?@@@@>@@?@@?>@???>>???>>??>??>?@??>?>??>??=??=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>>>>>=>>>=>>>?>=>?>>>=>>>>>==>=========8=>===>>>>;< MC:Z:151M MD:Z:26C80C43 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:7FKKFKKKKKAFFKF7FKKKKKKFKKKKKFFKKFFKKFKKKFAKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:1102:13656:9115 147 7 4490830 60 151M = 4490646 -335 ATTTTATAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCACCATGACTGAGAATAGTGGTACCCCTGACGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCAT ##############@=?:=>89*-@?:=>183??;??=??>=?>7)<<;??=:'?;=19;>:=>9><1>=>=>=:<>>;9>:5;=6<;;;+>989>=>>=?><>/>====:==3877===<<==:=77===<=>?+?0?= MC:Z:151M MD:Z:6A69C24T49 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:##############FFFA>>???>>>>?>>>?<>?>>>>>?>>>>>>>>>>>>>>>>>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>>>??>?@???????<>?@9??@?????@??@???????@??::8@:A@@@@@>;9:> MC:Z:151M MD:Z:23C80C46 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKKKKKKKKKKKKAFKKAKKKFKKKKKKKKKKKKKKKKKKAAFKAKKKKKFKKKFF UQ:i:84 AS:i:141 +HK3T5CCXX160204:6:2219:27032:43571 99 7 4490839 60 151M = 4491059 362 ATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGCGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAACGGGCTGGGCGGCTGACGCCCATTGTTTGGGA <>:???>>>>>>>>>>;>>====;9;>======.>>;<>>:>>792;>41>>>>>;-;<;>>>>>>>)8<>>;-;>*8)<<-<<>>>6>:>(=8.<9<>9>99?>???>>?>>>>>>>>>>>=>>>======>>>>=====>>>>>?>>>>>>>>>>>>>>?>>>>>>>>>>>>=>?>>>>>>?>>>>>?>>>?>>>>9>>>>=?>>>?????>@??@??????????=>:??@??<=@???@@@>@?>:8:8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKAKKFFKKKKKKFFKKKKKKKAFFKFFF< UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2214:9942:25991 163 7 4490842 60 151M = 4491280 587 AAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAAGTGGGCTGGGCGGCTGACCGCCATTGTCTGGGACAG =>=?>??====<====><>==>=<=>>==<>>>==>>=>><;>:>0=>>>=>><<>0<=>>>>>;>3>>2;=:>>>>=?<><>??@>4?>?:..?;./>/:///>9>@+0:=??:9-1?A################### MC:Z:116M2I33M MD:Z:115A18T7T7T0 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:4 MQ:i:60 OQ:Z:AAAFFKKFKKKKKKKKFAKFKKKKKKKKKKKKFFKKKKKKAAFAK,FFFKKKKAAK7AFKKKKKFK>@>>@<@@8=>8*>?=1>?????=9??>>>?=??>??>>=>;>>1>>=>>=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>=>>>;=<9>=>>>?>=<8==>==>==>====3=======7===;<1=7=7;>:>=>=<2?>>>@> MC:Z:151M MD:Z:21T129 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:##KKKFKFKKAKF?>>>?>>7>>=>>>>>>>>>>>>?>>>>>>?>:??>>?>>?>?>>:>8?>>>>?=<7?=@??<@?=??:?????@@??@???@==?@A@@@:88?@?>;?->;A?@@8A*<>@@;>=?9<@A@@?<.@?@?@7><>4=?@@@@@?@?>7???@??@@??@??@?@?>??>@????@??<?>>?>>>??>>>>?>>>??>>>>>>>>>??>>?>>>>>?>>?>>>>>>>?>>>>9>?=>9<= MC:Z:128M23S MD:Z:8C80C39 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:FA,7A,7AAFAAAA<,AKKF7KFAKKKFAA,KKKFF>>>?>?>>>>>>>>>>>?>>===>??>>>?>>?>>?>>>?>??=<>>?>>?>>???>>>>>>>>>?>?>?=>>>>?>>>?>>??>>>?@?@@>?@@@@@?@@?@>@???>?@??:?:>@0;@@@A@@99>@A=>?@@@@@:=:97? MC:Z:22S129M MD:Z:7C80C39 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKFKKKKFKKKKAKKFK,AKKKKKKAFFKKA>=>>>>?>>=>>===;>>==>=>=>=<>>>>>>>>?===;9>>>>>>>>>>9>>>;>>>>>>>>>?>>>>>><;>7>9?>>>?=;>>92<>>>?>=6>????>@??=??>83:@@@@@###### MC:Z:151M MD:Z:147T3 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKKKKAFKKKFKKKKKKKKKKKKKKKFAFKAKAKKKKKFFKKK??>==>>>><=>>>?>>>;8$76<>=?<>?=>??=,<?>;?>>>=>???>>>>=;-:(=<>?:-.;<00<=?=8>>?:>>;.8,)(1,<>=;:>>=,:-.79??=7%9%16:2)%%8?98..31*=@?>??>??>??>=>???????????>???>?=>>?>=>>=?>>>>>>=>9>=>==?>;>?>>>>>?>>?;9>>>>>>>>>>9>=>><=>><=====<=====<======>=?;>?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:FF>==>>>>>>>>><>>>>>>>>?>>>>=>>;>>>>>>?>>>>>>>;>>;>>>><=>>;>><>>>7>>>:>??????>?:@87=.=)9)):>1&/%3:%82;86:<<@6+6?*/>*8?:;..=@<984 MC:Z:151M MD:Z:2C80C22T22T2T18 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:5 MQ:i:60 OQ:Z:AAFAFKAAFFKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKFKFAKKKFFFKKAKFFKKKAFFKKFFKKAKKKKK>;-7=9<8=<=<=><<==<9<=>:==>>?66<9:-&7/277:<>=>5=<>><>>-9>=;4<>,-><>8<&.>:>>>>>==:>>...5::=?,-&;8:&(8;=.3)'5?;&<85<:################################# MC:Z:151M MD:Z:32G63A3A0T6G14T16T9A0 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:8 MQ:i:60 OQ:Z:AAAFA,AF?9=>>>>>>>=<-<<4>=<<=<:>8=><<;;=2<8.><><=&<7;'7->=481=;=>=>=?>9<:9;577=>;:0:6<>>>>>=>?>>8>.9>>>::>=>>>>>=>43=?>>)>;??@79@99.4,5*./<@<;##### MC:Z:151M MD:Z:42A32C48T14T11 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:4 MQ:i:60 OQ:Z:AA>=?=>>>>===<==<=>==<=<==<==<==<===>=>===>>>>==>>=>=>>>>>>>>?=>>=>>=>>>=<;>?>=>?>>>>>?>>?>>>>>>>>>>>>9>>>?>>??>????????????>???<@?@??@@@?@??@@@?>>::? MC:Z:151M MD:Z:70C80 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFF0<6==.(6>;=:>>>=>0)0/2.0=/>.'/00<62&>;>0/..:=>2/7;50:(&$(35;$1=.*08.<>/=..<..49##################################################### MC:Z:61S90M MD:Z:0A66T1A4A31T5 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:5 MQ:i:60 OQ:Z:,<<<=>>>=>>===<=>==<=<==<==<==<=<==============>=<6<>;>>>>>?=>>>>>==9>=>>>?>=>?>>>>>?>>?>>>>>>>>>>>>9>>>>==>>=?9?????????>;=?????>?>9??>?>?@<@?@??>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKA?>??>??>??>?>????9????>?==>>=>=>>?>=>>=?=>>>>>=>>>=>>>?>=>9>>>>>?>>?=>>>>>>>>>>>9>>>>=<=>======<=====<====<==<=:===<=<=7==>>=>>>?=>>?> MC:Z:151M MD:Z:65C85 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#FKFAFKKKKKKKKAFFKKKKKKKKKKKKKKKKKAKKKKFKKAKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKFAKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKF,9=;>???=<:;/,6>::<=0:;??;;0,3)=>98-;5.>>8>==?898-6;5.'.:81)538;;>49;>=;'*>=<,=6>8:>>82&<<7====:=#<==<'>(=4===;4===82>:<>= MC:Z:151M MD:Z:4T6A15C31C42A23A4G19 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:7 MQ:i:60 OQ:Z:############################F,7<7FKKKA7>:<;3A;=>@23A@?@??2??<<2?2??@>=6,??><>?>>>?>>>>9<>>>>>?>>?>>>>>?>>?>>>>>>=?><>>7>>?>>==?>>>>=<>>>>>>>>>>>>==>?>>>>>>=>=9?>>>>?<<<>?>>>=? MC:Z:116M35S MD:Z:34C116 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:1 MQ:i:52 OQ:Z:AA?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?<>?>>>??>>>>?>>>?>>>>>>>>>>??>>?>>>>>?>>?>>>><>>?>>>>9>>?><>?@????????????<6???>???@;?<9<:>'==;?@=<;>@>7:8:?998< MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKAKKKKKKKKKKKKKKKAAKFKFFKKK?=>==<==<==<==<=<======>>==>=<>><;:;>?>>>>>?=>>>>>696;=>>>?>=>?>>>>>>>>?>>>>>>>><>?%6????>>>?????=?>>??@???>@@@.@A><@@@>?3A-/;7;5>### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFF=>@2:????@?>>;8@?@@A@=1>7@>?7=@>>???>???@?>?>???9=>><<>9>>>>==>><>>>>>=>>>>>=>>>>>>>=>=>>>=>=>===>><==>==>===>=====<=>??>=<= MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AFA?@@@@@@?@@@?@??=@?>??>@??????>???>???@?>?@?????@>>9>>>>>>=>>>>>9>>>:=><>=>>>>>=>>>>>=>>>>>>>=>=>>>=>=>>>>>=<=========>=====<===;=====>???=;= MC:Z:151M MD:Z:42C108 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FKFKKKKKF@=????>>>>>>7>>?>=>=>>??>>>>>?;>:>><>>>>??>>?>>>>>>>>?>6=><>>?>>>=9>>?=>>>?>>>9>=>>>>>>>>??@//>?>?==>==@??19?>@@@<1?>A@??@@@.:::99< MC:Z:151M MD:Z:37C113 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKAFKKKKKKKKKKKKKFKKKKKAKFKKFKKFKKKKKKKKKKFFKFKK7FKFKKKKKKFKKKKFKKKFKKKAFFKKKKKKKKKAKKKAKKA,>7<>>>>>>?>>?>:>??==<;>;>>?>>>>>>>>>>=?>>?>>>9>?>>?>>>>><>?=??>7??<=?>=@??????;?68??7>????@>????@97?8;=@>-;7);22:;@>8>@A9??@8<>A=..<9:/79# MC:Z:151M MD:Z:36C114 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKAFKKKKKKKKKKKAFKKFFFAFFKKKKKKKKKKKKKFKKKKKKK?>?>>>>=<<==<=<==>=====><=====<===<===>=<=>==>>>?>>?>>>>>>>>>>>>7>>>>==>>=>>>>>>>>>>>==>>6>>>=>:>>>=>==>>>>?>?????????@?????>???????;@@@@@>@?72<1:@><=A@??;6-,>?9@??????????@@??@??>??@??>>;>>>>>?>>>>9>>?>>>>?>>>>>>>>>>>>>>>>>>>>>?>>>>>?>>>>?>>>>?>>>>>>??>>==>=>>>>>>?=>>>>>>>>>>???@=?> MC:Z:151M MD:Z:33C117 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:1 MQ:i:60 OQ:Z:K<=4<=>=====>9=====<<8=<=>>?>=>?>>>>>?>=;>>>=>>>>>>>>9>>>>==>>=>>>>>>>>>>>==>>>>>>=??>??>?=-9:>??>=??????9?@?????>8??@@@@?@@@4=>@@@A@@=?###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFAFKKAAAA?@@;;A@@?@?=@@A@@?A@@@??@@@@>???::5?????>?<>>>>>>>>><>>>>>>>>>==><>>>>>>>>>>>>>?>>====>=>>>>>>>=>>>=>===>>>>>>>>>=8; MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:KKF>?>>>?>>>?>>>>9>8;>>??>>?>>>>>?>>?>=>>><>.74<<7>>?>>>>?>>>>>>?:8=??>????6???@=6>=<=???;@????@==?=62@=-;==?@@@@?9)>8):==9@;8*.*9@=############## MC:Z:31S117M3S MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:AAAFAKAKKKKKKKKKKKKKKKKK?=6,+67=??=>>?=/<89,(,4=>>>>>>>>>>>>>>>>>>>>:?;>>>>?><>;?<>>>?>>>><>??>?>>?>>>>>>>?>>>>>>>>>>>>>>?>>>>>?>==9>>>>>??>@;=> MC:Z:151M MD:Z:14C136 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:######A<,A,A<,,KAA@@??@?????@?>>>>8->>=>>>>>>>>>>>>>>>>>>>>?>>>>>?>>>>?>>>>?>>>>>>>?>?>>?>>>>>>>>=====>>>>=====>>>>=>?>>=9>>>>>>>>@ MC:Z:151M MD:Z:12C138 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AKKKFKKKKKKKFKKKFFKKKKKFFKKKKKFAKFFKKF<8@>@>@?@@?????@??@????????????:????>?>>=>>>>>=>>>>>=>>>>>>>=>=>>>=>==>>>>>=>>>>>>>>>?>>=>>=>>>>>>>>>>===>=>====<=<=<====<=8==<====<==>=>>>@>8<:= MC:Z:151M MD:Z:5C145 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:KKKFFFF-@?0*.=;-77<-;.8-;-@>828=>>72:12>8-()>01=7=:?>>?>>>>>=$&;>>>>>>><;>>>=?>>6>>?8>>9;>>>>?>>?>>>>>??>9>?>@8+- MC:Z:151M MD:Z:0A99C50 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:#FKFA,FA,,,<<,77<,<,7,<,KF<7<=>>?>>=<=>=====>==><===========8)3=>==>>=>>>=>><<=>>==>.=/67=;/=;>=>=5>>=>>=>><>>>>>>?>>>>?>???>?????????>???>??>+8<;=?>===9@@9=8@69?1:995AA5;@@>#### MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKFKFKKKKKKKKKK,>)0/)?@>>:*???:1?:????>???;=????>?????===7:?>>=>=>>>=>=>8>>>>=><;;6/>>>?>=6====>=7>>>>>>>>>>8;;=>>=>;7<====<<8;:<67;;<=:;=;==>=7=>>?>=;= MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#AA7,,2=?;==>=====>=>>>>=>===>>=9=99>>>==<>=>>>>>>=>>=5=;>>>;>><>=;>>=>==><>>>??>9??40?>>9=??*<<@?@/77@==@?;?9@@4<@=A'A8>>AB0;>>267299<; MC:Z:151M MD:Z:108T23T18 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:;?>?>?>>>>>?>>?>>>>>>>?>>>>9>>?5>>>?>>>>>>>>>>>>>>>>>>>>>?=>:>>?>>>>@?>?>????8<<>@?@??@??????8@??9??????@??,3>?@@&22;@@=A@.<=>=?>>?>>>>=>==>============8====<<==<=====>>=>>>==>>>>>>=>>=>>=>==>>>>>=>>>>>>>>>?>>>>>=>>>>>>>>>>>>>>>>>:<>>?>?>????>>:??;>>??>?<>>?>?@?;@@0> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>??>>>>>?>>?>>>>>>>?>>>>9>>?>>>>?>>>>>>>>>>=>>>>>>>+=>?8>>=>@>>;;=??9>@>>?????@>@??@??.?>?=@???????:???>?<;.;;>@A@@04;?/?9&(/88<*89@86<)<>=3A?=<### MC:Z:151M MD:Z:126T24 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:A?@@@A9)@@>>@02>>;?@@::75:4*>8?:)????:<>7=<89=<<=6:?>?>?55:1:>><>>;=>>><><>>3?5>><>=>>>>>>>>>>==8>13>:5;==<===81><=8==<====;=<=<===;=5;77>=:==@?<<.= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:7KFAKAAAA7,FAF<>???>>>>?>>?>>>>>>>>>>872>>=8=>>>>>>>>>>>>>>>(:>>;>?:>>>>?>>>>?><<:=<><=:=>>?>>>>7=>?;>>?>:-6?=??@?=67?=??7>>?@<@>??@;0%6>@27/9.<:<### MC:Z:151M MD:Z:50T53T43C2 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKAAAKK==@@A@@8@@8=&9((>>8%5@>9@>?<>=:@???;=??????@?:???>=-??>=8?>>?>><<>>>>>>=49=>>>>>><>?<9>;6>3<-9>>=>:=>==>><=>8>>>?><>=9=9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:##AAK<:>80:0>1@@?@967.???=29??>?????78;??767<><=?<>=>??>=><>>>>2*)>><799,><;>>8=<=>>>>>>>>>8>=<>>70&>;<1==<;;=7(,&)(96=;=<:2));:>&<3'7);=')'<,9 MC:Z:151M MD:Z:127G8G5T3G4 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:>?>>?==>=========8====<<==<>=>>=>>====<<>>>>>>=>>>>>=>==>>>>>=>>>>>>>>>?>>>>>=>>>>>>>>>>>>>>>>>/<==>>?>?????=:????>??>?:.:?>?@>:???@@A>@A@@=>=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AA?>?@?>>?>>?>>>>>>>?><>=8==>>>>*;;><====>>>>>>>>=>?>>>>>?=>>=?>>>>?>>>><>??>=>>?>>>8=>>?>>???;>=;?-85>9>799<9<=<399=;<@>=>>>8'/9=AA?6=### MC:Z:102S49M MD:Z:35A113C1 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKFKKK7AAKFKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKFKFKKFKKKKKK7FKKKFKKKKAFFFK,A???A@8/.?:?>;?A>>>9@@?@9.??=?@@=?>>@???=>===?=?>?><5==?>?:>>>>><>><<<)91?8;>>:=>>;>>>=>>>9<7>>;;=>>=><<7=>>>=>7>>=>=>=<>==<===>=8>=<==>==>>=?>?=;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:#A7?@==>=====>====<<7====<<==<===>><>>=;>=:;<>>>;9=>>>>=><=;>>>>=>>>>>>>>>?>>>>>=>>>>>>>>;>???=??5=;9=>>?><6=?>?>??>?7?>@?@A?;@6:??@@@B<>=@@>;88= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKFKKKKAFFKKKFKKKKKKKKKKAKKFAKKFFAKKKAAFKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKFKK7FA??@>>>>>>>?>>>>9>=>====?>=>>=>>>>>>>=><>8>>>>><>>>>>>>>>>>>==<>>>>>>??>>>>>>>>>>>>?>>>>>>>>>>>>>>??????????9>>???99=?;?=??@@?:????=>>?=@@@@@@@?><:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAK>?>>>>?>>>>9>>?>>>>?>>=>>>>>>>>>=>>>>>>>>?:=>>>?><7??>>==?>????<<=???8:9>@=.;*8>1<'15:--:1<82/;:9?@7(58;=?8@?################## MC:Z:151M MD:Z:138T8T3 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKAFKKKKKF7KKKKFFKKFKKFKAKKKKKKKKKKKKKFKKKKAAAKKK7AAFKA,A,7F7<,<:=0?@?<>@@@@9????:'8?>>>=?=???==9??>>>????>>>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>=======9>===>=>====<===>=8========>=====<>>>>>???>=? MC:Z:151M MD:Z:20A130 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:KAF<,AKFAAKKKKFKKKFA( VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.10 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.X +@PG ID:MarkDuplicates.11 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.W +@PG ID:MarkDuplicates.12 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.R +@PG ID:MarkDuplicates.13 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Q +@PG ID:MarkDuplicates.14 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.T +@PG ID:MarkDuplicates.15 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.S +@PG ID:MarkDuplicates.16 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.N +@PG ID:MarkDuplicates.17 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.M +@PG ID:MarkDuplicates.18 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.P +@PG ID:MarkDuplicates.19 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.O +@PG ID:MarkDuplicates.1A VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.J +@PG ID:MarkDuplicates.1B VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.I +@PG ID:MarkDuplicates.1C VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.L +@PG ID:MarkDuplicates.1D VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.K +@PG ID:MarkDuplicates.1E VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.F +@PG ID:MarkDuplicates.1F VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.E +@PG ID:MarkDuplicates.1G VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.H +@PG ID:MarkDuplicates.1H VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.G +@PG ID:MarkDuplicates.1I VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.B +@PG ID:MarkDuplicates.1J VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.A +@PG ID:MarkDuplicates.1K VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.D +@PG ID:MarkDuplicates.1L VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.C +@PG ID:MarkDuplicates.1M VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates +@PG ID:MarkDuplicates.1N VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.9 +@PG ID:MarkDuplicates.9 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.A VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.B VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.C VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.D VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.E VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.F VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.G VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.H VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.I VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.J VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.K VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.L VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.M VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3GGCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3GGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.N VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3GGCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3GGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.O VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3GGCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3GGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.P VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.Q VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.R VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.S VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.T VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.U VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.V VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.W VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.X VN:f6e71fe CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTJCGCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTJCGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.7 +@PG ID:MarkDuplicates.Y VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.V +@PG ID:MarkDuplicates.Z VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544932/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544932/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544932/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544932/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544932/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544932/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544932/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544932/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544932/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12891/v2/NA12891.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.U +@PG ID:bwamem VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.1 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.2 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.3 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.4 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.5 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.6 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.7 VN:0.7.7-r441 CL:/seq/software/picard/1.1092/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@CO aggregation_version=2 +HT3HVCCXX160630:4:1122:21978:49584 99 1 14804624 60 151M = 14804861 388 GCTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGG ?=???@???@@?>?>>>>>??=>>?>?>>>>>>>==?@?=>>??>?>?@>=>@>>@?@=?@>??@>??@@??@>?@@>>?@>??@@??@>??@>??@@??@>?@@>@@@?@@A?@@A?@@@@A@@A?@@A?@@A?@AB@AAB?AAA>><6/884/>:?)?=:>(>-?>??@>??@>???7?=>>@=>>?=>>?=>>@=>>??0=>;< MC:Z:151M MD:Z:23C8T5G3T16T3T3T19T7T55 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:9 MQ:i:60 OQ:Z:####################################################################################JF7-<<7-J9>@?@?>>>>??>>=?=?>====>>==@=?>>=A?>?=?=??>@??@?@?????=@??>?@?1=???@?>=???@?@??@6<@@?>@?@?>@??>@??>@??>@@@>A@@?>?A@?A@@?A@??A@??A@?;A@?@AA@@A@?<<;; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAFF-FFJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJFJJFFFAJJJJJJJJJJJFJJ61*6=1+7>;+;53(301*.<265<9)391@6?;@79;@>?>@:?>?>???>?>>>=>>?=>>?=>>>=>>?;<>?6>>?=??>9;< MC:Z:151M MD:Z:27T50T62A9 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:3 MQ:i:60 OQ:Z:#############################FF--JF-<(4=52'9?39=<(2=@=>>>>;>>=8<:?=<=?=::?;==?=;=>>==?<>>>;<< MC:Z:151M MD:Z:2T8T4G1C12T10T15T7T19T64 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:9 MQ:i:60 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MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJFJJJJJJFJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:5:1117:17005:10873 147 1 14804744 60 151M = 14804667 -228 AAGAAGGAAGGAAAGAAGGAAGGAAGAAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAG ##################################>=<<>95)<)1???>>;??;=8./.>>>>>A?<@7=?-?;@>?=><@=?:>2>><<5>=>>=/???>;=/>+?:>(>(@??>>??@>>>?>?>>??>>???==?=>>?=>>??=<>< MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:##################################A<7AA7)-A--FFA==>>?>=?===?===>=<=?===>===?<=8>;;=?==>>>>?=>>>?>>?>????>>??>>?>@>>?>>=@>=>@=>>@>>=@>>>@>>??>>>>@?@><@@???@A?@???>@>>@???@@A@@@A@@?@@@@A@@@>@@???;9=; MC:Z:151M MD:Z:22A128 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJFFJJJJJJJFJJJJJJJJJJJFJJJFFJJFJJJJJJJJJFJJJFJJJJJJJJJJJJJJFJJJJFJJFJJJFJJJJJJJFJJJJJJJJJJJJJJJJFFJJJJJJJJFJJJFFFFJJJJJJJJFJJJFJJJJJJJJJFJJJJJJFFF UQ:i:41 AS:i:146 +HT3GGCCXX160630:6:1208:11962:26853 163 1 14804749 60 151M = 14805179 581 GGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAA <=<=@?>8@>>=?>==?>>=?>==?>==?>?=@??>@8;=@>=?@?>=??*=?6??=?A==@A:=2)<82)A=A@9@<,??*;:########## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJ7>:?%52<<>>?<414209><<.*6>@@<2'3<@>(1/>9<>?>;==<@?9>;=??7;=?;=<=%1=33?=?>=>???9??>??=??????@??==>?@??>>>>?=?>>>?>?==>=>>>=>>@@21?1;?9?< MC:Z:151M MD:Z:21A129 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:###############AAF7A)<-7FFAAF<--<7?-?85,:2>,:5,:@=<./59)60-/)>6+6,-)?98/'>>@<>>=/??>????==?=>>?=>=====?>?>:;< MC:Z:151M MD:Z:11A22A4T19T42T1C46 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:6 MQ:i:60 OQ:Z:#################################################################F-FAA--FF-<<7-77F-77-/@=;=0>=0@???;=@;=?=;0:@?@><7->?<;>>>?>??>@>>9?9->@>????5;:>>?>.??>;8>>>>?=>>9><>?>=>>>?>>>?@>==;= MC:Z:151M MD:Z:20A4A108 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:2 MQ:i:60 OQ:Z:#################################################A-AA=>?===?===>===?===?===>=9>;)>>===>==???=>??>>?>>>?===@>>>@>>>@>>>@>>7(5=?>@??>>?@:@?@A??@??>A?<>@??@@A@@@A@A?@@??AA@@,:?;>A?=?<9;= MC:Z:151M MD:Z:90G60 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJFJJJJFJJJJFJFJAJJJJJJJJJJF-FJJJJJJJFFJJJJFJFFJJAJJJJJJJJJFJFJJFJJJFJJJJJJJJ7-?>>>?=>>?===;=>>?=>>?>>>?=??@>>>?>>??>>>@>??8:@??>>??>??@@?:@>??@>??@?@@@?A5>?@@@@A?A?AA@@@??@A?@@@@@@@A@?@ABB@?=@A?A@A?A1AAA@A@@<<99> MC:Z:151M MD:Z:92A58 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJFJJFJJJJFJJJJ?>>>?==>?===;=>>?=>>?>?>?=??@>>??>???>>==>>7;:>??>???>??>@=:@>?<@>??@>8???@@A@??A>>@@@?A???@@@@A?@?A@@@@?@@@?@@@@?A=BBA>AA@@;:>@BA@A1<11?@@AB@><:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJAJJJFJJJJJJJFFJJJJJJJJJJJJJJJFJJJAFJF7AAFJJJJFJJJFFJAFJJJFJJJJJF7AFJJJJJFFJFAJJJJJFFFJJFJJJFJJFFJJJJFF=<=:>8@<@=?>>?>@?=4-?>?>4<,=??;@>?<>?>>?>?@?>?=9,?>?=?==?=>>?=>==>;=?=>>?==>?>>>?;:< MC:Z:151M MD:Z:12A12A4T13T9T96 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:5 MQ:i:60 OQ:Z:#######################################################FFFFFFAA>?>?=>>>=>=>=>=>=>=>==>>=>>>==>>=>>?>?=>=>>><>>@??>?>?>?>><>>?>?>?>??>=?>????>@>????>?@>@>@????>?>??>@?@?@@AA?@AA@?>??@@@?@?????@?@@B@@A@A@@A?><<:? MC:Z:151M MD:Z:8A142 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJA UQ:i:41 AS:i:146 +HT3GGCCXX160630:6:2106:32420:15320 99 1 14804763 60 151M = 14804966 354 AAGGAAGAAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGAC ?=>2?>@?>>@>>=?>>=?>>=?>>>?>>>?>>>?>>>>?>>?>???????@?>@>?>@??>@@>?>@?>>@??@@?>@>@?@?>??>@>@@??4??>@?>@@?>@@@@@@A@A?@=??9A@???3;8A@@A@?@AA?;@>:<4 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAA-FJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJ??;<><=>9>=(<9<<.;==;?=7;=????>>>>;??>;=>?>;9<=9?==/5:>>@=?A?@;>?>@??A>7?;?:?11*11=+117<@?@@AA=?>@?################################## MC:Z:151M MD:Z:3A117A3A7A17 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:4 MQ:i:60 OQ:Z:AAFAFAFAAF7F?>=>>>>>>>=>>>==>>=>>>==>?>??@?@??>???>??@>???>???>???>???>??????@>??@>?A@@@@@@@A?A>@@?@@?@@@@@@@@@@@AA@@AA@??@?@A??AA@AAAA@AB@A?AAA=AA@@@A@@=67## MC:Z:151M MD:Z:3A147 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFFJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJFFJJJAJAJJJJFAAFAJJ7FFF<@77=1/<>?4'0@4(:31==3402+:=.1>6%5=8)1?=7?7?&7?=<'1>88>>&5)2+;>?=;+46=);===>=9?=9>>:17>==:+;96< MC:Z:151M MD:Z:7G16A8T1T9T34T11T11T46 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:8 MQ:i:60 OQ:Z:##############################################FFJFAAA-?>>?>9>?=>>?>=??=>=>>>????>?>>?=>;=??>>>>>=?>>?@?7>@>??@???@?>@@????@@?=>?@:??@@>@@???@?>??===?@@@?A<@<<<@>@A@@?@@=>A?88<=<>@?=B@A8;@;=;99# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJAJJJJJJJAJFJJJJJJFJJJJJJJJJJJFFJFFJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJFJJFJJJFJJJJJJJJJJJJJFJFFFJFJJJJFJAA>?>>>@=>>?>>?;>81;<>>;>=????;??>???==9,=>>?==<>=?@?>;?>??@==?@?7@?????<@?=>;@:??@@>@@=??@?>@??9@?A@=?;A@<0=5:;.@>=>@=9@,3=<98>A?:>.<208?A???@??>?>>>>>>>@>>>@>>@>?>=?>>=@>>>?>>=@?>>@?>>@?=?@>>?=@?@?>??>?>?@??@??>@?>?@?>??@???@?@??@???@??>>>??A@>@@>>@A@:?A@@@A@@?;@,@A@@@BA?ABAA?A?=;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJFJJJFJJFJJJJJJJJJJJJJJJFJJJJJJJJJJFJJFJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFFJJJAJJFJFJJJJJJ-FJJJJJJFJJJJFJJFJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:1207:2635:20823 83 1 14804785 60 151M = 14804506 -430 GGGTGGGGGGGAGGATAAATGGAAGGATGGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTG #############################>@A=>?:)>.<<79:<*?@?==?=*9??==??=1>??>=@=@???@>??@??>@??>?@@??=@@>??=>?@;?>@=>??>/:?>>>?=>>?=>>9=>??==>?<>>@>@@@?@?>@? 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MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJAJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:7:2122:12175:65476 83 1 14804827 60 151M = 14804612 -366 GAGGAAGAAAGGATGACAAGGGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGT #######################@@@7<7A??7?@@A@=?A@>A=A?A?9@@>?@>?>@>??????@>?@@=?@@>??@>??@>??:>?@<>>?@>?@@>@@@???>@>??@?@?@??>>==?>?>?=>??>???>>>??@?@?@@??;=? 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MC:Z:151M MD:Z:51T99 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJ--FJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJA>>=>??:>??@>>>@>??@>>?@>>>>@>????@>@?@>?>?>>>=?=>>?>>>?>>>>>>=>>>?>?==>>>?>>==;?===>>@>???@=>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:#JFJJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJAJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3GGCCXX160630:7:2102:21501:32056 83 1 14804853 60 151M = 14804630 -374 CACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGAC <=;??A?=:>A?A??@@?;A:@@A>A??@?@@@?@@@@@@A?@@????>???@>>5?>??:>?@>>>>?>???>?@@>>>>?>??@?@>??@????@??>?>??>??>>>>?>>?=?>??>?==>?>?>>===>===>>?>??@??A<=@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AFAAJFFFAAFFJAFJFAAFAJJFFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJ7JJJFJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:2:1115:22485:66707 147 1 14804856 60 151M = 14804471 -536 AGATGGAAGAATGAAGCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAAC ###==9A??AAB=>>*=0;A>/B@?B?@?<@@=/?@@>?+1:/?A1@<.@??@A?7?3>?=0:>>9?<8A><=1?;368>@>@>;==)=?=@=??@>>?@?>>>>?>???@??8=8:>@@>>>>?=>=&:>=>:>>??=?>>;<< MC:Z:151M MD:Z:15T135 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:###AF7A7AAJF<<7-<-7FA-JJFJFFA7FF<-JFA7F--<-AF-J<-FJJFJF7F=><;>>?>><:>>=>>4=><====5>8=(87=>>5>=>>>;69;>=&#:;?>'(.:';>?03>;7:0.<<9(:'/;99@?(''9=#################################################### MC:Z:151M MD:Z:8A66T35T8T5T6T16C0 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:7 MQ:i:60 OQ:Z:<7<-7<7F#FAJFFJJFJFAAJJFFJAAJFJJJA?/.>>>??<>>;?=A>?99>??@=3>@>>=?=>=?>=..@=).>5?>??@>;==?>??@=>>??=>??====>>>>>=>=;=>>?><== MC:Z:151M MD:Z:12T112 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:#########################################JF<<7AA7FA--7<??>>>>=>>??=>??>==>=>>>=>===>=>=>>?=:>>>==>=>=?>?>9>>??>>??>???=>@0>;>>>=?>@>@8>>??>>>@>?>?>???<>???>>>?@?@>@?@@?:7@?AA@@>?@@????A@@>B@?A@5;;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJ>/75--<9?=<>>;*-=1===2)<09;)?5,;2= MC:Z:151M MD:Z:7T30A2T16 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:3 MQ:i:60 OQ:Z:####################################################################################################################FF-<7--A9;.2<3A>;3-1A=,1B>>=@@@2@@@@@:@A??A@?@@A??@A?@1=?@@;??@@???@>??@?AAA@?@@A??@@?@?@?@7?:?@???@>??@???@???????@?@@?@>??@?@>>>??@?>>==?>>=?>??=>>?>?>@?==< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:FF<--7-F<7---A7--JAA7JFA-FFFFJ:<>????@>??@???@????>?????@?@>>?????>??>?=>>>=>?>=>>??=>>?;?=>?>??=<=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:FF?@?@@????>=>>=>>>=>>>>>>>=>>?>>>>>>>>>>=>=>=8=>??>>??>???>?@??>>>?>?>@>?>=>>?>>>@??>?>??????????????@>@@@?>??A?AA@>>>??>>>>A>>>@@A@?@?A@?@BBA?===;8@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAAAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJ UQ:i:0 AS:i:151 +HT2V5CCXX160630:4:2106:8491:10503 99 1 14804873 60 151M = 14805284 562 TATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCC ??>>A@@>??>>>>=>?>>?>?=>>?>>>>>>>?=>=>=>=9===>==>?=?>?>?@@><>>?>?>@>@>??@?>>>@?=>?>??????????>=?>?>@@?@?=?@>A@@>??@???@?A?@?A@???@?AA??AA@@@@B;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJFJJFJJJAJJJJJJJJJJJJJJJFJJJA=@@A@@???@A?@A@??AA@??A???@?@?;?@@A?>>@>??@>??@>???@>????@?@?@>?>>?>???=??@?>?@?>>>>?>???@?@>>??>??>>>>?=>>>=?>>=>>??=>>>=>=??>>>=????>>?@?==?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:##A>?A@A@<7A@?@@?A?@@@?@@>@@????>@>??@>??@>???@>????@>@?@>?>>?>???=??@?>?@?>>>>?????@?@>>??>?>>>>>?=>>>=?>>=>>??=>>>>>=??>>>=????>>?@?==?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:##JJJJAJJF77JJJFFJJJFJFJFJ@>?>>=4?>>=====?>=>>==>>=<=?=1?>=;=8==>.>=?>==>>=>>-<(?0.===>=?>?>?==>>>>>A?>>9.49??>>/>>?>?>?@>@>?>?>@;?>>>?1;?2;@>>>??8@?>?@*??@@=??<<:: MC:Z:151M MD:Z:54T96 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJ-JJJJJJJFAAJJJJJJJJJJJJ-FFJFJFJJJ-FJAJJJJJJJJ-A-F--FJJJJJJFJJJJJJJJJAJJJ<-@A???@??=====?>>>>==>?>==?>>>?>>=9>>??>>>@?>?@??@@????@??>@>@?????>>>@=??@???@?>?@?>>>>??@>@@?@???@>@????@A?@@@?A@@?:>>A@@?A???@>A@@?AA@B@@?A@?A=<:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFFJJJJJJJJJFFJFJJJJJFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAAFJJJJJFJJJFFJJJJJJJJJAFJJFJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:5:2121:10470:31054 99 1 14804878 60 151M = 14804978 251 AGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAA ?<<>@>???>?>>>>>?=>>?>>>>>>>?=>>>=>=:>>>>==>>=>>>>@@@???>?>?>@>@=??@?>>>@????>??????????????@>@@?@>>?@>@@??@@@@@@@?A@@?A@AA?@?A@??AAA@@?BB@BAAAA@?@=<:@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJJJJFJJJJJJ UQ:i:0 AS:i:151 +HT2V5CCXX160630:1:2107:15280:37418 83 1 14804880 60 151M = 14804703 -328 GTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGGCAACCTATTCCTACAAATGCCTCAAACT =?;=?A?A@@?A@B@@@A??@A@@?A???A>@?:?@@@???A?@?A>??@>>>>@>???>?>@?@?>>>?>?>@>?>@?>?@?>>>>>=>??@?@>>???>?====?=<=>=>=>=>>??==">===>?>=>=>?>>==>@>=????>==? MC:Z:151M MD:Z:122A28 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:A7JJAJFJJJJFFJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF-JJFJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:12 AS:i:146 +HT2V5CCXX160630:1:2223:6979:59780 99 1 14804889 60 151M = 14805255 517 AAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTC ??=>??>?>?>=>>>==>=>=>=>=8=>>>==>>=>>>=>?>7===>===?>@>????>>>?<>>?>?>>>>??<>>>>??@>@???>.:?=?@?>>>??>>?>@???A@A??=>@???A@@?@;AA?A??@@@?=AA@@>B?>@?@=<;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFFFJJJFJJJJJJJJJJJJJ-?@@>??@?>>?>>>?=>>?=>>9=>>?==>?=>>?=@???>??@>??@??;??@??>>@???@>??@???@?????>?@?@@?@>>?@?@@????@????>@@@?A@AA?@@A@@?@A@??>@>?A@@AAA?A@B=BABABA@@<;>? 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MC:Z:106M45S MD:Z:3A23T20T42A59 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:4 MQ:i:60 OQ:Z:##########A-F<)7)JJFAA-7FFJ-7-77-A-F77-7--7A-FA<-A-A-F:+=;;;04)>43;)/.9?0:2<0<;:>>@=::=<>8<;8@>>>>>>>-?>?=>658->9?:1>=>>=:&1>=?3'.==>=>9<<>=>:=9:=12?=->&>@;=<<@:5< MC:Z:151M MD:Z:12G2C1C10C9T1C9A38A39A21 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:9 MQ:i:60 OQ:Z:####################JA-FJF7------77-;12?<==?01@@>;?<60>@9@9@A<00(??@?>@?@@??>?@@@>?@@:?@?>?>@>?????<>#>=>??@???@>>=?;==>>>@><=??@=?>>??>=?>>>>=>>>>?>>?>?>@?<== MC:Z:147M1I3M MD:Z:1A3G14T72C57 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:4 MQ:i:70 OQ:Z:######JJF<--@>>>>==?=?>>>>>>?=?>>?>==???>>?>>=?>>?=@>@?????@?????@??>???@????????@>@??????@?@?>@>>@?@?@@?@???@@@@@?@A??@@@@@@@@@A@@@@@A@@?BABABBBAA@?>;:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJ< UQ:i:0 AS:i:151 +HT3HVCCXX160630:7:2123:18690:33023 163 3 17077056 60 151M = 17077225 320 TGCTTCCTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGCAGTTT =<?=??>?>==?>?=>>??@?>@@???>>@>@??@?@?@>?=>@@?@?9?@@@>=??@@>?@A@@>0=A@@A@@?@AA@@A@?@@AAAA@A:;@@@>@@A@@5:;==@AB>BA12@?AA>?>@??>?==?=?===>>>>=?>>?>==?>=<>?=>=?<>?=>=?>>>>>@>??>>?>?=>>?????>>=>>?>@>>??>>@?@?>@>>@?@??@>@????>???@??>?>??@@@@@?A@@@?@A@@?A@A@??>A@AAAA@9<:;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJFAFAJJJJJJJ<(@>/@???A?A@?@5@=@??=/??:=?;><:@<@;>???@>>>??@?=<<==>@;?>=@>>???;>=>>=>>?@??>@>====?=>>=?=====?=?>>=?==>==>===>=>?>>?=?=??>>@>=>@=>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:FJJJF7)FA-FJJJJJFFJF7FAFJJA-FF7FJFFA7JAFFAF7-JJJJJJFJJJJJJJJJJJJJFFJJJJFJJJJJJJJJAFFFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJFAFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:1103:26027:13422 147 3 17077063 60 151M = 17076910 -304 TGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTT ?<;5<==A@B=B=382==?1<2;AAA@?<:?9A=>A@?A=:?A@1A>/@=(A@@A=@?/>;<>;5@?=)?@A?@??@@9@2@?@??>??@??@>@>;;??@=@>??@??????>;6@>??>??>?>?<>><<@>@@>1==== MC:Z:6M1I144M MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:FA7)A<@?BAAAB>AA?A@AA@??2@??@A@@?A@@A?A@AA@@AA@?@?????@>???@@???????@?@??@???@?@??@?>@?@@@@?@?????@??@?@>>?>??>@>>>?>>>>>?>>>?>?????>?>??>>????@?@@?>?? MC:Z:146M5S MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:JJJJF>>?>==>>>>>?>>=?>>>=>;?@>?@>?:??@????@>>?>??>@>?@?>????>>?>>@?@@?@??>>>??@???><6????@?@@@@@??@@@@???A@AA@@A@A@>A@?A@@AAAAAABA@@=:;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:A-AFFJJJJ?>>=?85/9)7>>==>?=>8>>5?3:<@>>?>-:==?>=@??(==>@?=>=?>>>,2=>>4=>?.=,?0@(6??@8'?>?/./<>=??@?::>>??7@=<@@>>??/8;?>5382,:1,1=@B;1;<@===@>AA@@AAAA??>@<@@@?@?@?@@@@?@<@@A@?>@>>???@>>>??@?>>?><>>??>>?>>>>?@>??>=???@??8?>>>?>@>??>?>>>>>@=?>>=?==>=>>==>>>>?>>?=?=??>>>=?;>=??6==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:FA@@@;??>@???@??@@@@@?@@>???@>>??@@>>>??@?>>?>>>@?<;>@>>>>?@>=?>=???@??=?>>>?>@>??>?>>>>>@=?>>=?==>=>>===>>>?>>?=:=??>>>=?>>>???==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:JFAFF,72<8A+*8>@2<82@@=?2A>>1@A@<:@AAA?@@A@A?>@??A@@?<@@@A@?@@A?@@@@@@@?@?@?>?@A?@?????>>?;<@>>>??@>@>????????????@?>@>??===@?>>?==>?>?>>?>?>>=>?@>:=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:JFAFFA-7-77A--7??=@>>?>==?><=>?=>=?=>?=?=?>=>>>?=>>=>?>==>=>?>>>>?>==>=@<=>>=>@>?>>?>>?>@?>@=?>>>?6;>?@>?>>?>>???>?>?>>?>?@>>>A?A?@A@@@@@@??@@??@@@@@A?<@A?A@<<### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJ>@??@?==?;@>>?>>=?>>?=?=??>>?>?>?>>>?>??=>?@@==>=????>@??@???:?<>>=>>@?@@?@??>>>?@@??@>@???@?@?@????>>?@@@??<@B?@;?;=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AA6:@?;==6>=?>=;3,;?>>>>>>=?>27<3>=32:>>>==>=>??=@????<<@>?>&@7>@*9?'5?*;8=??/;=:=/,72:??2?5>??>;>12=>;;?@?/++9??29=??A21?>@:?:49)56<;######### MC:Z:151M MD:Z:0T115C20A4A5C2 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:5 MQ:i:60 OQ:Z:#A@=?@=>@=A>>>AAA@B?@?@@A????@A@@?@???@@@??@???@@@=;>@??>?>>>??A>>?=@>>>>>@>@??>?>>?>=><=;?>?@??@>@>?@?=>=<<>>>><>>>::=>=>=>?=>=8:/=7==9;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:####JFAAA1@;A@@A4=>>:?>0>/>??*AA=@A>;>?>8>/89@>==??@?@>>>:=9@?>897.@?@@>>>=?=>???????>;:;>@>=>;0<=.==@=?>;?>:/?>;<< MC:Z:151M MD:Z:3A147 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:##########################JFJ<<-AJJFJJA7---<<-F7JJJF7@@74<8>?8:7=><<>>@@<@>?=??@=@>?@>?=@<(??@?>?>@8?@>?????>?>>??@>>78>>>??=>>?>?3>????@;@????>3>>?===>>29+==9;==>>>=?>=>==?=<=<< MC:Z:151M MD:Z:12T43T94 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:F7--AAAJJA<7)F77--FJF<8;?<;@@???@A@@>>0??=@>@>=@;?@@??>:@??@?@??@>?????>?>?@?@>>>>>?>???>???<?>?@??@>>><>>>=?=>>>>?>>>?>=>>>?>??????<>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:JAJFFF77JFF-FAFAJFA7JJJAJJJFAJJJJJJJJJFF-JJFJFJJFJFJJJJJFAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFJJJJAJJJJJJJJJJJJJJJJJJFJJJFFJJJJJJJJJJJJJJJJJJFJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:2110:29061:33305 163 3 17077089 60 151M = 17077576 638 TTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTACAATTGTCAAGGGTTTGTGATTAAATTCACACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGTCCTCACTCCTCTTT =<<->?=>?>>?>?>@?>>???>4<>)??<:>?>@???????>@?@??@???@?@?<7;;@)>9@@?9'>@>?@@?@@;?;?=@9=A>@?.;0:.:@(9=@7@;;>A@A@?A####################################### MC:Z:151M MD:Z:68A28A38C13C0 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:4 MQ:i:60 OQ:Z:A7<-<:>><>B@ABA>AAA8AA@@?==:;>1A???>AA>0@1?>>@?@>>@>>>@???@@??@?@>?@>?????>@>>@?@>>>>>@>@??>????>??1:?@?@@??@>?=>?>>?===>2>?>?=>@>>@;>>??=>><@>1?@??@?@;># MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:60 OQ:Z:JFFFFAAJJJJFAFJJ<;@=>>=>=?;>>?>?>?>>>>>?>>>>??=>>??>>?>@>?@>?'=>?>>*>>;?3??@??><9@??=7<>????>=;=?3?<@A=@>@?@?===<@@??428A;5@?A@?A@A9<>6>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAFFF<@@A@@>>@=@@>@<3?@?@>>;?A?>>>?=>>??@>>=>>>?>>>:??>@=@??@>?>>?77?=<>=?==>>=?=>6?6>>=>=8>=>>>>>?:>=>?;>?==<=>>?6?=5?==>===>==?=>>?==@=@=>@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:##JFJAJFJFFFFJFJFFJF7JJJJJJAJJJJJJJFJJJFJJJFJJJJJJJFJJJJFJJJJJJJJF<>?>??>>>>>?>>>>>>?????????@>@????>?@?@?>@>>@?@?@@?@???????@@?A>>@@?@@?@@@A@@@@@A@@?A@A@AAA?@?AA@?A@@@A@A@@BABAA@BAAAB@@B@@BAB@BA@BABA@?=97> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJJFJFJJJAJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:6:2121:8684:15584 99 3 17077096 60 151M = 17077269 324 CTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCAT >@=>@>@>@??>>>9>>>>>?>>=>>>?>>>>>>>>@>@>>>>>>@>?>=@>>@?@??@?@???>???????>>:????>???@>???>@??>@?@??@????@???@@@?A@A@?A?@@??A@@@A@?@??A@A?AA@B@B<;;;>??>??>?=>>==>>>=>==?====>===>=?==>>==>>>==>==?=?>>?=>;==>=??>>=?>>>>=>??>?=?>>?>>>>>>@>@???@>???@>>@?>>????>@>??>>??@?@@?@??A?@?A??A?A??A@@?>=<;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT2V5CCXX160630:4:2204:9983:31336 147 3 17077101 60 151M = 17076961 -291 CACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTC ##9=:@BAB@BA@B@?/11@1@?:@@@@@A@AA>>@>?A?AA@A@??==@=A?@@?>>??@@A?A??@@>>?=??><;@?@@??@>@>?@?>@>??@?>???????>?=???9=>==?>?>??>=>?>>??@@=@>@?>:<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:##FF7>@@?2<+;A@A9@AA?@;=A:@=@AAAA@@@@@@@@@@A?:?>@@@A?A@@@@?????@>->@??@@@@?@?@@??@???@>?????@??>@???>?=@>>@>?>?>=?>?>>??>>=?@@??==< MC:Z:151M MD:Z:5A6T18A119 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:3 MQ:i:60 OQ:Z:######JJJF<<-AF-JF@???=>>=7?>==>=>?=>==?4::>=?=,==;>?>?==?=9?>?>??>@>>=?>9???>?<=>=>?>??<<>>>?>??=>>@?@??@????@??>??>>@?@??@>@?>>A?@@A@?@???8>>?@?A@A?@B9BA8/A8@?<8<@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:AA-FFJJJJJFJ7JJJJJJJJJJJJF<7FFJFJ-F>??@=?>>@?>=>>>>=?>?>>??>>>??>>?>:@>@???>?=::??@=;3??@?@?>@??7?>>A>@@@@8;@;@:???@>?@@@@?A?@A?7@>@@?A@A/=B=9@B?2??A?@AAA@@AABAAA@@A>=(8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFFJJJ?@@@??@?>?>@??@=?>>>?>?>>>>@>>>>>?>???>?>>?>>?>??@>@???@>?;>@>=?===??>?=?=>>==>=>=?>=>==?=>>?==?=?==?>@==>>>=====@=>??A>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:#JJJJJJJJJFJJJJJJJJJF-JJJJJFJJJJJFJJJFFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJFJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFFJJJJJJJJJJJJFJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:1:2106:6938:8693 99 3 17077113 60 151M = 17077478 516 TTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCT >?<>A?>5???>===>===>=?==>>=>>>>;<>==?>?>>?=>===>=>>>>=@>=>==>>?=?>?>>?>??7><@?@???@???9@>>@?>>???>?@>???>?>>?@?>?>>@@@?A@?A@A?@A@@@?@@@@?>@?A?A?@@>9=<@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJAFJJJJJJJJJJJJJJJJJJJJJJAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ>?>@?>>>?=>>?>@>=?>>>>??=>:>>@>???@>?>=>?>??=?>>>>???@?=???@??@??@>??A?@@@@?@??;?>?@@>?@@@@?A>@???@?@?A@?A?@A@A@A@@B?B@?BAA?@A@@@@?@@B@0;BAAAB@A?<:8: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJFJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ7FJJJJJJJJJJAF UQ:i:0 AS:i:151 +HT3HVCCXX160630:5:1211:1590:21227 163 3 17077118 60 151M = 17077349 382 GGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATTTTTCCTTACATTCTCTAATAC <:<9?@>>?>>>>>?=?>>>>>>???>=?=>@<:)9@??????>?>>;=@=>>>>??????@?????=/??>>@@?A+*=':5,3:<>?################################## MC:Z:151M MD:Z:129G21 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:AAFAFJJJFJJJJJJJJJJJJJJJFFJJJJJFA7-AJJFJJJJFFJF?A@AAAA@A@@@@?A@?@?@>>???@?@???@?????@??>@?@@@@@?@?@@??@???@?@?=@?@>>>@>??@?=?==?>?=@>=?>?>9??>>=?>?>>>>=?>?>?>??@?@@??>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJFJJFJJJFFJJJFJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJJJJJJJJJJJJFJJJJJJJ=;=>>=>?>@==>>==>>>==>==?>?=><;=>=>>=>=?==>==>>>=>=>==>==>==>?>?>>??>?>>?>>@>>>????=@>??>>?>?>@???>>@>?>@>>@>@>>@??>>=@@?????A?@?@@??A?A@?@@@@>><:? MC:Z:151M MD:Z:144C6 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJAAA?@B@@@AA@@;>@?@@@A@@?A???@?A???>@>>>>>@>@??>@>>?>??>>?>@>@@>=@>>>@??>??>@??>?>?>?@>?>>>;>;>>=>>>=>>?>>=>>?===>=>=?=>>=>>=>?=>?>?>@>??=@? MC:Z:92M1I58M MD:Z:142C8 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:FJJJJJFFJJJJJJJFFA7AFJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT2V5CCXX160630:1:1222:10358:24181 147 3 17077128 60 151M = 17076975 -304 TTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTNTAATACGAGTTGAGGT >68<=@@@B@@AAAA@A@A@A@ABA@@B???@?A?@@?A?????A?A@@?A??@?@@?<>@@@A@@@?@?@@@?@>?>@?@???>@??>?>???@>?>>??????>???>??;??>?>?===>=>=?>>>====#><=>>8>?==?>?;;< MC:Z:151M MD:Z:134C16 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:FJFA;;>@?@A@@ABAA@@A@@A@A@@A?@@@@@?@?@A@A?????@>??@;????>?@???@?>8?@@>?>?@??@>>>?????@>?>??@???@?;???@>@?@?>???=>??>=??>>==>>>?=>>?>=>?>?>>>>>>?@>>??A<;=? MC:Z:151M MD:Z:139C11 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:JAJ?@???@?>==?==?>?>>?>>===>>>>>?=?>>>>>>>>>>>>==>>>?>=>??@??=@????@?>@???>????@????>@>??@???>>@?@>@?>@?@??@???>@??@@@@?A@@?A@@@A@A@?@@?;@A@AA6A?83,=@@>?=64;+5??;2?>5+8?>%&??>@?@2>>8?>?:4;0;9?>@???<<>6033)@><=??><01:.?>?<;;=?=?<>@;?6;.5?++>2=3;;<;?9>>>>/=?==802.>>=@==+:4=6==>=9< MC:Z:151M MD:Z:0C10A56A66C15 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:4 MQ:i:60 OQ:Z:##FAJF7FAA--AFJAJA<<<->?>>@+@@?@>?>>><>??>?>?3<25?>?>8=>??=?>=>@)?????>6?;>>>??>?@=@?9@?@???@?@>A8==?=A?@?A??A?A?>A@@??@@@@?>?=A?<&;A??A?B<>@A@;??A=A>A=1AA>?=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:<<=?@A@B@@@>?@@@@???@@@A>????@?@@@?@???>?????>?@???@>?>?@??@>>>?????@>??>?@???@?>???@???@??@??>=?6?=?>>>===>>?=>>>>=>?>?>>>>>>>?==>>?==>>>??????@>@=;> MC:Z:151M MD:Z:94C31C24 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:2 MQ:i:60 OQ:Z:AFJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJFJJJJJJJFF=AAABB.@1A@A?@8<2==??>@>@??@@??@@@=>.?@@?@??@>@>@@?>@>??@<@????@??=>>???@>?>>???>??>??????@??>???=>>>=>>?>>>>>>>>?=>?>?>?=>?>?==?>=>??>==@???@>0>@???=?===>==>>?=><=>==>>>>>=?==>=>?===?>?>>?>>??@??>>?>>@?@??@>?>?>@>??>>>?>>@>?>@?>@?@>?@@??>@???>>?>@>@>@?>?A@AA?@A@@@@@@@@@?@@@?A@@A@AA@B@A><;9@ MC:Z:151M MD:Z:121C29 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFJJJFJJJJJJJFJF UQ:i:41 AS:i:146 +HT27VCCXX160630:6:2211:31426:6003 99 3 17077148 60 151M = 17077222 225 CTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATA >A<@A?@>>===>=>>>>=@==>==>4@=>?>==>=>>===?>=?>>=>?><@==?>==>?>?>@>???>>=??@??=>8@??>@?>@?@??@???>;>??>>?>@>?>??>?@;@=?@@?(:8?:=:-,>008=>A5;+/>A@*;94?75>=91<=>?<00?8=98;8>??;??=@?783*+=:0>78>7>*9@????>?=>>>>>@=??:06=<=@??;402=3==>>?=;>>>?>?(<8?&:+)?>@??;?< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:#A@>>>==>=>>>?<>==>==>>>=>=>==>=>?===?>?>>?>>>>>>>=??>=>>>?>?=>>>>?>?>??>?>>@>@=@?>@??=>@???>@???>>?>@>?>@?>?@??=?@@=:??:@;@@?@@@?A@@???@@A@A@?A==:?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJFFAJJAJAF7F>????>?=?>>>>>>>>>>>>==>>>?===?>?>>??>>>>?>=?>>>?><>?@????>@>??@??;>>?=@>@?>@?@??@???>@??????>@??>@???@?@?>?@>;@A@@@@A@@@@?A@A@??A@A@@>@B@@@@?=;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJF UQ:i:0 AS:i:151 +HT2V5CCXX160630:2:2103:21521:71330 147 3 17077154 60 151M = 17077028 -277 TTAACATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTAC >8:3<>?@;AAAA@@*?<@*>:B<<=/?>AA?/1?@7@>5@?A?A?8?@=>@>@A??/>>??@?A@)992>?+.9=>@8@??<=;>>??@6??>7@>>:<<>>=?@@=7-::?@>?@??==@?=>??>==>$>=8=:>=>?>??=9<< MC:Z:151M MD:Z:4A146 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:>>?==>>>>>>>>>?>>>?>?>>>@?@?@@@>??@@??????@?@??@?@??>@???@?>@7>A<@????A?A??AA@@?A@@?@?@?A@A?A@=@A@B>A@AA=A7@>==B=?A>?AAAAA=;AC@B@@B@?1A;A1?==9## MC:Z:151M MD:Z:110C40 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:AAA?ABAAAA@AA@>AAABAAB@B?AA=@B?@@A?AA@@@AA@?@@?@@A>>??@@@<@@?@@@@@@A@?>@?A>???>??@????????@?=@?@?@>?@>@>>@?>?@?>???>>>?>>>?>?>>>>?>>>??>>>>???;=< MC:Z:151M MD:Z:101C49 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:1 MQ:i:60 OQ:Z:F>>>=?>=>=?>?>>>??>>>?==?>==>>>>>?=>>>=>=>>?>=>==???=?>=?>@=?@???>????>??>@>?>??>?@?@?>????>@>>?>@>???>??@>>>@?@?@??@?@=@?@?@?@A@?@???@?A@A?A@?=;=> MC:Z:151M MD:Z:93C57 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJFJJJJJJJJJFJJJJFJJJJ UQ:i:41 AS:i:146 +HT27VCCXX160630:5:2119:24718:11330 147 3 17077175 60 151M = 17076975 -351 GATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTT 8=9<>>9=;A>?>B?A=@?@?@::@??A???@@??>>?<@>>@>=>??=>=>?>?;:>>@>@>>@;?>>???>>>>>=>????>=>>@?>?;?><>=<>=?==>>=@>?==?=>=>>=?>>===>>>>>=>===>>=>=;< MC:Z:151M MD:Z:93C57 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:7FJJFF7FAF?,#>>@=;@:?@@?=;,;@8??@??@>?==6;+/62>>><=??@?=>?>?=>??>???@<2>?@?@==9>8>=?>>??=><5>7>28>=>7>?>>>>?>=?=?>?@>==9>? MC:Z:151M MD:Z:24A13T54C57 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:3 MQ:i:60 OQ:Z:A7F7F>?@AAAA@@A@@A@@A?A?AA@?A?@@A@@@@?@A@?>?????@>?>>?????=>??????>??>??@>?>>>??@=>?=>???>>?>>>??>==?>>>==>>=>?>>>>?>>>?>>>>>>=?>?>?@>?=:?= MC:Z:151M MD:Z:93C57 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:JJJJJJAFJJFJJJJJJJJJJJJJJJJJJJJJJFJJJAJJFJJJJJJJJJJJJJJJJFJJJJJJJFJJJJJJJJJJJJJJAJFFFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFFAAA UQ:i:37 AS:i:146 +HT27VCCXX160630:6:2221:13453:44732 147 3 17077178 60 151M = 17076911 -418 TAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCA 9<==+?@@@>B@@;AAA?>?@@6?A???@@<@?A>@@?>@?@>A??@?>A?:?@=>@>@8==?@>>???>>>=?>:????>>@>@9>??98?@>>??=3>??>@?=?>>?>?=>==<<<>==6=>=>>>>><=<>=?===?>=>=;>==>< MC:Z:5M1I145M MD:Z:90C60 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:=>@??>@?@>>??>>>??>>?>==?>?>>?=?>>=?=>>?>=>==@?@>@?>@?@>?@>??>@???>>?=?>@>@?>???@@??9??>@?>?>@>>=?>@@@???A@A??@>A?@:@?@?A?AA@@@??@A@<>@@A?@A@BA@>=:<> MC:Z:151M MD:Z:0A86C63 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:2 MQ:i:60 OQ:Z:#AAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJ>?>>>>?>>>>>==?>?>>?=???>@???@?>?>>>?<>??>?>@>?@@??>@?=?>>?>@>A>@??==?@A>@A?7?>;==@?>?@@?A?:>@@@@A=A@?A@A@A???A?AAAAAA@ABAAAA?B,==+BA@@B@A?<;:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAAFAJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJAJJJJAFJJJJJJJJJFFJJJJJJJJJJJJF7FFJFJJJFFF>@??>)2<@@A?@@@@A@@@A@<39@?>-@A@@A@A?@A@?@@A?@>>>@>@???@?>?@?@<>??<8?@>>???>>>??@;@???@?@=?>>??>>>==7;>?>>>>==>?>?=>>?>=>=?=>>?>?>>?>>>?;<8; MC:Z:151M MD:Z:16T61C72 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:AFJJJJJJJJF@@?@>>@?>>>@>>>?>>>>=>=>>??>>==?>?=??=?>???????>??@????>@?<>=???@?@?>??>:?@??@?@??@?>@=@?>>@?@?49>?>????@@@?@@@<@@>@>?A@@?AA@@?A@@8@?,AAAAAA@BA?.<;8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJFJJJJJJFJJJJJJAJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJFFJJJJJJJJJJFJJJJJJJJ7>>=,=>-8>><>#=<>=>>?>=>==?>?=??>@??>?@@??>@???>>?;@>>'.->?=>?@>?@>9???)4?@??8@<;@@?=??>A@@???>7A==?@?@?A0,?@>A=?@@########################## MC:Z:151M MD:Z:16T57T68G7 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:=>@?@??@>?>>=?>>>?>=>==?>?=?>=?>?=>??>>=?>>?==?>?>?=?>=>??@?>?@?>???>???>>>?>@@??????@>@?>@??@?>>>@>@?????>?A@@@??A@?@?A?@?A?A@@A@@@?A@AAAA;@@@@?<=;? MC:Z:151M MD:Z:65C85 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:41 AS:i:146 +HT27VCCXX160630:3:2206:18335:8007 83 3 17077210 60 151M = 17077118 -243 TCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGC :<:>?@@A@A@A@@A@@A@@@@@>@?A@@>?>??=???=>>?@?@?>?>>>?>@>>>??>?>?=>>????>????>????@?9>>>>>>??>??@=><:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AJFJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:5:1213:8724:55385 99 3 17077214 60 151M = 17077611 548 ATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCA ?A<<>>>>???>==?=>=@==?=?<=?>>==>>>>==<=?=>=>>==?=?>=>>>?<@>=>=?=?>>=>>?>=>@==:<::>>?4?>>>?>???=?>>>>>?;>>@?>?>@>>>?>??>??@@?@?@?A@:??@@??A@@@AAA@??;=;8 MC:Z:151M MD:Z:54C96 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJFJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFAFFFFJJJAJJJJJJJJJFJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJFJF7 UQ:i:41 AS:i:146 +HT27VCCXX160630:5:2216:10125:30984 1123 3 17077214 60 151M = 17077611 548 ATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCA ?A<<>>>>??=>==<;<=?==?=?<=?>><=>>>>==7=?=7=>>==?=?>=>>>?=>3>>=?=>>>=>>?>=>>=?:<==>>?>?>>><>???>?>>>>>?>=>@?>?>@>>>?>??>??@@?@?@;A@9??@;><8A?@AA?A??==@@?@>?@@@A@??A?@@?=@>>?????=@?????<4@>?=>@>?;>>?=>.>>>???>=>9>>??8====>=>?=?>?=?=?8@<<< MC:Z:151M MD:Z:0A15A37C96 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:3 MQ:i:60 OQ:Z:#################JJJJJJJJF<7-7A>=>=?>?=?>=?>?>>?>>>=?>?>>>?=@??>@???@?@<=??>:*???@=@??@?>@?@=>>@?@??>:@>???????>@?@@?@@@A?A@@>@A@??A@@?A?A?@A@A@?AA@AA@;@@@@@?AA@A@@@?A@3>@,7<=:### MC:Z:151M MD:Z:149A1 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJ-FFJJFJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJFJJ7AJ)AFJA### UQ:i:2 AS:i:149 +HT27VCCXX160630:6:2211:31426:6003 147 3 17077222 60 151M = 17077148 -225 TGGCCCTCACTCCTCGTCTAGCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATA ###<=A?A4A?:>???@@@@??@?A=:91?;@>????==>=?>@???>>@?@>?>?>>@==?>??+><99>?>@>>>@>>;>?2>>>>??=>>>>=><======>=>>?>>>===?>>9< MC:Z:151M MD:Z:15T4T130 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:2 MQ:i:60 OQ:Z:###AJJJF-JFA?<@A>?A=A??A@@??@@@?>???@>????>>@>@?>???:>=>>?>@>>??>@?@>=>@?@>?==?>?>>>=>?>><<=?===?>=>=?=;=>>>>=>>>>=?>>>?>9==<===?>=>=>=>=>>????>=?=??:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AJJJJJJ@A@A?@@@A??AA?A@A@@@AAA@A>@@:@A;:@?:>?=@?9=?>?9@>?>@@>@>@??>?>?????@@>@@@?@@:====?=??=?=?=?=?>??>>==>?=>;=< MC:Z:151M MD:Z:45C105 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:##JAA-AFJAFFFFJJJFFFAJFJJJFAJFAFJJAJFJFF<-FAJJJJJJFJJJJJJJJFJJJJJJJJJFJFAFJ<;7:>82@@??@AA1:7<@>8/A>@@@?A???@@??@?@?>??>??=?.8????@??>>>?>@>>>?@>?=?==>?>??>??@?>=@?:?>8======>?=?=?=?=>>?>>>==><=>=<>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:FAAFF7-FAFAJJF-<7::=>@BA@BABAABBA@?AAA@@@@?A@A@AA@>A@AA@AA@;@A?@@@@>?@@>@@@???@@@?@??@?@@@???@?@@@?@???@?@??>@@>@>@??>@?@@?@>@@>@@@@@?9===>>=??>?>?>@=????@?>>@??@?>>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:JFFAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:6:1221:20019:44433 163 3 17077226 60 151M = 17077806 731 CCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGCGTTGAGGTGCCTAGAAAGCTTACCAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCCTGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATCTGCT <8><>,?>6=7<>>@7>===?8>>==;?=<<><<6>>?<<>>=373:;&>@).886..?87&3+=2(=8>>9:?@=>@>>?::@1',<<<>*@>@?8<@>?7?<=<>.=>7=;?>?26348?02@:/6>?>9@@=7A?####### MC:Z:151M MD:Z:42C1A22A39A38A4 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:5 MQ:i:60 OQ:Z:AAFFF>@ABAB@ABA@@@A@@???@5>?>>=A?<>9@@?9:?;@=>>?>@<>???@?@??=4?@>=??@??=?;>>>?@?=??>>?@?@>??@?>>?@?@?>??>>>??>?@>9====>>?>=>=>=>=>??=??>>@??@=??=?>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:JJA?AAABBAA@AAA?@@@?A@A@@@@@A@AA@@A@A@A?@A@@>>@@>@@@???@@@?@?????@????@???@???????@>?>@@>@>@?>>??????>??=???>??9>>==>=??=?=?=?=?>??>>==>>>>@?@@@?>>>=>>??>>>=?>>=>>>>?>?>=>>>9>@>>?>@?>@?>@?@?>>@?@??>>?>???????>??@??????>@??>@@??>@??>?>?????@?>@A@@A@;@@@9@?AA@A@A@A@@@A@@???@@?AAABAB@>>;A?@93+?????>+A@?@@@@?@>>??@>>??>@<@?>>@?@>????????8>>=??????>>>?>@<=>@?>?=@==>=>>>>>@>>>?>>>?>8;=====?>=>=>4><=:@8>?==>=9>>>>>@==@>@?<<@= MC:Z:151M MD:Z:33C117 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:FJJJJFFFF7--JJJAJJFJFFFFJA-JJJJJJJJJJJJJJJJJJJJFFJJJJJJJJFFJFJJJ=?>?>====?=>=>>==?=>>>>=?>=>>>=?>?===?>?=>>=?=>>>==>>=>=>=?=>>>=?>==??>>>@>>>?>??>????=@>>?@?9>>>?>>@????????@@@?@>??7>?@@@@@A??B@B@@?=<<> MC:Z:151M MD:Z:30C120 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ??@;8:??9??@@?>??@>>??>8?@?>=???>?>?=9>?>==>??????>:>>?>?>=>??>?>==>=>=>>;>>>>=>>>>>>8======>>=>=<=>=>>?>>>=+><=>>>>>>==>=>>=>??<==? MC:Z:151M MD:Z:29C121 PG:Z:MarkDuplicates.10 RG:Z:HTJCG.5 NM:i:1 MQ:i:60 OQ:Z:A@????>?>>=>>>>?>?>=>>>?>?>>@>?>??>>?>?>>>??@><>>?>????>>?>??@??????>@??>@@??>@??<>>??>:@@?>@@??@?:???>@?AA@A@A@A@@@A@????@?;A7AA@A@?BABBAAAB@?=<== MC:Z:151M MD:Z:26C124 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJFFJJJJJJJJFFJJJJJJJJJJJJJJJJJJFJJJJJFFJJJFAFJJJJJJJJJJJJJ?A@?>@>??>?@?>><@???@??>>??>?>>=>@>>>?=?>???????@>=>???@?9>>==>=>?=?=?=?=>>?>>>==>==>?=?>>>==>>?=?>?===?>>@=??>==@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:JJFAJJJJJJJJJFAJJFFJ7JJJJJJJJJJJJJJAJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:4:1112:27336:24269 99 3 17077251 60 151M = 17077621 521 CCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGA ?9>?>>=???>;?>=>>=9>??>>=?>4>;=@>?>==?>>><<:?=>>>:>>>>??>??>?=@>@=?:@???>>;?1=>=?==??<4?>?@/08>>??=>@?????????@@?A>??A??@@@@@A@?4>@@@@@@2@?@AAA??A;;<<# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJFJFJFAJJJJJJJJJ??>?>=>>>>=?>=>=?=>>>=?>>===>>?=>=<>=>>>=<=>;??>>?=>??>@??>??=?>==?=?>???????<@???@?8=>=??>@????@?@?@@??@???@?>?<@@@A@?A@=7?*=@@?@AA@@>7??@=?==;99 MC:Z:151M MD:Z:13C137 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJ?>=>>=8=>>=>===>>>=?>>===>>?=>==>=>>>=====>>>=>==>>=>>>=@>>?>@>?>>>>????>?>@?????8==>:9>@?????>?>?????>>>?>>??@?@@?>@?A@?@@@:??@@?@??@?=??>=<:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HTJCG.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ9?>>=>>>=>>>=??>>>>>>?=?>=?>>?>===?=@>>??=>>?>>>>=@?=>>@>>>@>@??@?>>>@??@??9>>>??>@???????>?@??@>>?@??@@@?@A@?A@A@@A@@???@@?A@?AA?>ABAA@@?=<<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:A??>>>?>>>>=?;?>>==?=><>??><=@??>;>??>@?<>@>@??6???>@??(=<8????<>@?????>?@@2A@>?@?@@=?A@>1@,?;5@@A@A><:9; MC:Z:151M MD:Z:77A73 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:1 MQ:i:60 OQ:Z:A?>=??>=@=?>>0=><;==>>?>>==>=>>>>>>>=+??=???)>9??)3?>>>;><56:;/?????@?:>>>??7@??>??@?=:?A<@>??>>9=9@?63::@@@@@)479=>@@?):3>>@><>@A:9A09???=;7=< MC:Z:151M MD:Z:2C115A32 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFAAFJJFJFJJ7AJAAJJFJJJJJJJJJJJJFJJJ-JFJJJJ-FAFF->??>@>?>@?>?>@>>>????>????>@?????:>=>>>>@?>?=>=?=??@?>?>=>==>>?>>?;=?=?>=>=>===>==>=>>?==>=?=>?=>>?====;><< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AJJJJJJJJFJJ7JAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:6:2121:8684:15584 147 3 17077269 60 151M = 17077096 -324 GAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAG =88B=A??@0@@1A?0@>@9=A?@?@3?@?@???@?@@@@@A9???@@A@:>>7>@??@>@>@>@>9<0?>??=?9?@=?>>???@>@??=???=;>?>>?>?=??=?>>?>>>???>;?< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:A-JJJF-A@@@?@AA@8?@@@?@?@???@?A?>?@@?@=@?>?@@@@?@@@@?<>9?@@9>>??????>?>>>?>??@?@??>=>>??????>>?>??>?>?>>>?<>?>??@>=?>@;<@>???>>>>?@?A@@:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:JJJFFJJJJJJJFJJJJFJJJJJJFJJJJJA?@>AABABA@@A@A?@@?@@@@@>?=@@@@A@@??@@@=?@@AA?@@;?@@????@??@??@@??@?:>>>>??@@>@>@>@>??@???????????@?@??@??@>??6===?==>>>>?==?>?=>?=?>?====>>??>=9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:7JJ-JJJJFJJJJJJJJJJJJJJFJJJJJJJFJJJJJJJJJJJJ=>?>@>>==>=>>>>>>>=>>>=>>>>>=?>>=??=<=?<>=>=>>>=:=6;?=>:??9>>>?62@@??????>??9?>8>>?>>?????@?<@;@>???@@???@?@??>>>@@5A@:>8>>A@@@@@@@97A>7@<<>??>>>@>?=<==>=>9>===><;>>=>==;>=?>==?>=>=?===>=>>=>>>>=?>>>@?:===?>=@>>????>>?<@??=>>;>>?????@>>>>@?????<>>??>?>>;@??@=@@8@@>@A????@@?@?A@;@@?=<:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJFFJJJJAJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJFJJJJJJJAJJJJJJJ==>>?>><=?=>?====?=?>>>>==>?=>>>=?>=>=?=>=@>@??@>??>@??@??9==>??>@?>>????>>???@>>>@>>?@???@?>@?@??????>?????@@?@@@7@@?>@@0@?@?@?B@A@;A###### MC:Z:151M MD:Z:150A0 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJAFJJFFFJJFJFJJFJ7FJFFJ<-F>???@?@>@?@>??@???>>?>>?@???>:>???@>@??=>>@>>?>??@==?>?=??=?>>==<<=#==<>>8>>>?=>><>< MC:Z:38M1I112M MD:Z:134A16 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:FJFF7FFJJJJFF:;@@?@:??>????@?A>@?@>??@???>>>><<8?@??>>????>@??>>:@>>?>?>@==?>?=??=?>>==<<=#==5>>7>>>@=>><>< MC:Z:38M1I112M MD:Z:134A16 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:FAAFAAB@A@@A?@@@???@@@@@?@>@???;@???>@???@?:>>>>>>@?>?>?>>>?????<>>>>>>:>?>@>>@=@?=>>>==>>==>=>>?==>?=>>?====;>6>=?>9>>>>==>??*;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AJFFJJFJJJJJJJJJFJJJJJJJJJJFJJJF???????@@>@@@?@@:>>>>?>@@>@>@>@>@?@@??>>????@?@@@>>@?@@>@>?=>>?=>?>>?@=>?>?=??=???>>>>?>>>>??9???@>???@<>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:FJFJJJJJJJJJJAAF-JJJFFA-JJJJJJJJFJJJJJJJJJFJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:6:2212:17827:40284 99 3 17077284 60 151M = 17077420 287 GAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCT >==>A?@>>==>=>>>===>=>>>=>==>>=?>>=?>=>=?=>=>=>>>?>>>=@>>>?>:=>=??>@???????>??@??>>>?>>?????@?>@?@??????>>??>?>>?@?>??@@@A@@@A??>?@@@@?A@;@@@AAA@??=;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT27VCCXX160630:7:1103:28858:30316 83 3 17077291 60 151M = 17077266 -176 TAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACA <==>??>A@??@AA3@32;???@A???A@51?A>>,@??@<=?,=>9??@@9:>>>>>>@?>?88'?>?@?==?6=?==>??==<==?=?>:><>78=;'=><<=?===>?;*?=>>?=>=,>><>>?>9=>>9=>>??=>=@>>:2=?>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:FFFFFJFFJFJJFF-J7-AJJFFFJFJFJA6?;?>>>>=?>>><==>?>>:>=?7=>==>>=?=?=>=>===?><>5>9===5<9??><<<:;0=>>;==?@???@?>8?@??@???943=><>>?98?<-/?A@?@:@?@?>@A9@?@AB@1@>:<### MC:Z:151M MD:Z:106T44 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAF-A9<;:?@AAABAA@@@@?A?@@AA?<>>?<@@@@?@??:@>?A@@?@;???;+@AA?@>@>A>??@?????????=>@?@?=@=@@>??@>>>@>>?;??@>>><@>;?@>>==>>>>>?>9>>>?=>>>?==>?==>?>>>??>;;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:JJAJAJJJJJJJJJJJJAJJJJJJJFFAJFJJJJFJFFAJFFJJJAJJJJJF-JJJJJJJJJJJJJJJJJJJJJJFFJJJJFJFJJJJJJJJJJJJJ?@?>?@?>>>>9?>?;57@?=?><>>>?>?>>??;:>?9?6?>2@@9?6@?.5.2?@=&:3@?9:;2@5?>>?8@@@@?@>?;?@?&930<:>??@;:@:A6B@@>@>@==?@>@########## MC:Z:151M MD:Z:135C9C5 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJFJJJJJAJJFF>??>?>>=?>=>=?=>=?=>>>?<>?=?>>??>9>==>>=@>?>@@??>>>@???@???@?>@>@??@???>>??>@?>@@>>?>?=@@???@?>?>A@@A?@@9@A@@@@A@A@?@A??@AA@BA@BA@:@<:9# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:A-AAFJFJJJJJJJJJJJJJJJJJJFJF?>>>>=;>=4;?=>>?=?5?@???>?=>??>7><>9>=@?.?><>>:>???@>>:/>>.@???A?>@?@@@@@@?>.6??A@>?@@?@@@@A@@>@A=@??A?@A@@@:?3>51=BAAAAA>0@>B=>BA64??@?;86= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:-A-AFJFFJFJJJFFJJ?@AA@A?B@>>>?>?@>@>@>@>??@???>>?>>>@?@???>>???=??@>>?@=>@=>>@>?@??=??=?>>>>>=?>>>=?=8>>>?=>>=?=>>>>>>>?>>=>???????>9>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:FJJJJFJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFAAA UQ:i:0 AS:i:151 +HT27VCCXX160630:6:1218:20131:24901 163 3 17077304 60 151M = 17077496 343 CATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATA <;>?>;?=>>=?>>=?><>=><>><>;><<9=>>?>9=>>?>>@?????>?>??@??>>6?==????<@?>??@>?=??>=>=???>9?@>><;<1=A?@@A<@?@@?@@;=@>?@AA@A?@B?@AA?=;:># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFFFJJJJJJJJJJJJJJJJJJJJJFJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJFJJJJFJJJJJJJJFJJAAJAJFJJFJJFAFFA-FJJJJJFJJJAFJJJJJJJFAJFJJJFJ7FFAJJJJJJJJJFFJJJJJJA# UQ:i:0 AS:i:151 +HT3GGCCXX160630:7:1213:13565:60712 163 3 17077308 60 151M = 17077644 487 ATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATCGG >?=??>=??>>=?>>=>5>?(=>?>;?@??@;0???;=6?9;@?@8@;????*>>>2=*7<>>6@4&;<=@?>?6:?@?<:@A>;>@@@@98<<8@@@A>=@8?=>?A@1)>65@@1+>+:+3; MC:Z:151M MD:Z:148A2 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJFJJFFJJJJJJJJAJF-FJJJFJJJJJF7JJJAFAF?<-02@9;A=@@?A@@;?@;????>?A@?@>@?@:@@>??;>>?><<1???@>>@>@<=??6>>>?>>?>>>=>>?2@;=@>?>@>>>>??==>@<9>?<><;=9?<==?=<=?>>><>>:=9?===>>>;=@;:7< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:JFJJJJJJJJFJJAFA---F7AFA@A>8@A@AAAA@<1BA?ABA;4A;?>??@?@A?A?A?@*@?@)==<>@??A?=@@???@?@A?>=A?@@>??@>@?@>?@?@>@@>@??????@???=@?4???@>??>@>????=>>?>>=>>>>>>>>>?>?>?;>>>>=<=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AFJFFFJFA7?@@??@>@>@@?0;@?9@??>?????>?60?,>@>>>?>=#@>???#8:/ MC:Z:151M MD:Z:136T5A3 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:2 MQ:i:60 OQ:Z:##################JA---A89:;<=:,@A@<>',?$@@A@@@=?;??;?@@?@?=?@?@?@AA@?=@>A>@>4?6?@=?@8@=>???>>>?>>=??@@>>??@>?@>??@>>>>???@;??:?@??>?@?@>>?@>>??>>?>>?===?===>>?===>=>>=<=< MC:Z:151M MD:Z:14T2T133 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:2 MQ:i:60 OQ:Z:JJJJFAAA-JJJA7-)F)JJJJJF><=@>@??@?>>=?>>?>>8===>>=?>:>>>>>=?@?>?===??>>?>??@?>@?@??@???>????@?>@?????>:>>9?>@??>?@??@???9?@????@?=9<>@@@?A??@??9=<@A@@@AAA>@?+1<@0@AA?;:<-:<5> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:A?AA@A99A?AAAABA73'>5?=@A@A@@?@??@A*@@??@???@@<@@??@>@@?@@@???@??@??@A>>??A?@@>???=>>>??>??@@9????>>?>@>>>?>>>?>??>??>>>?>>>?????@>>>>>>>>>>>??A@;@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:@@@ABA@A3AA@@;@=@:A@AB@B@A?A?@@A@@@??@??@A@A@@@?@@@A?A@A???A?>A=@?A??@?A?@@>@?>>>>>@???>@?9???@>??>?>>??=>>?@?>>?>==>>===?>?>??========?====>?>=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:??>?>>?>>8===>==?>>>=>>>=>?>>?===?==>?>>>?>=?>???@??>>=>>=@>>@?>>???>@?>???==>=@??@>??9?@????@>??>?@>>?@A?A>>@?>@A???A@A@A@??1?????@@<@@@A>=99? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ-AJJJJFJFJJJFFJAJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:7:1111:24992:56844 99 3 17077331 60 151M = 17077568 388 TCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATTATTTGC ?>?>?9=?=<@@@7===<>>>>>>?=;????8><1==>>>@@@:<=>>9>@>>>?=@>?>>?<>/=90>9;9?@>??=??>@?@<>@:8@/>?>??@?>?@?@?A?@=@+88;/;::?@=???########### MC:Z:151M MD:Z:144A6 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:AAAFA<<=??A@A@A@:>?????A@?@?@6@8@@A@@@?>?>>>=??>@>>@>@?>?>?>>>?>>?>??@>>??@>?@>??@>>>>??>?>??8>>>>=>?=?===?===?>>>=>?===?===>>>>>?============?=??>>>??>=:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJJAJAJJJJJJJJJJJ<;@@A>B@B?A?@@=@@@??@@@@@?A??@=??@A>A@A>??@>?@???@>?@??>@?>@?>?????????@?9???@>??>@>???????@????>>>>?>>>?>??@@===>>>>>>=====>?>?>=>>?>8>@@>@>?>>>> MC:Z:143M8S MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:JJJJJ<7FJ;;>@?A@B@B@ABA@A@@@@@@@>@A@A@@A@AA?@@A?>?A>>???@@>>@?@>?@>@?@>>>>???@?@?:?@?@>?@?@>>?@>>?@??@??@>>?@>>>>?>>>>>?>>>>>==?>9=>?=?>??@???<=:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:5:1211:1590:21227 83 3 17077349 60 151M = 17077118 -382 ACTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTGTGTTTGTTAACAGTTGAGTAGTGCTTTTTATCCAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGAAGATGTGGTA #;;:@=B?@=6+6BA?=?A>=0<9AA?=?A=AA>>(A>@@A?>=?=@;>?>6@=@>>?@@????=.9)*1>/:+?@>??>???9?96?=???=???>=====??>?>>>>??9=??=?=>?@=3@>@=<=? MC:Z:151M MD:Z:0C34A32A82 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:3 MQ:i:60 OQ:Z:#JF=A7B+9>4@@@??@@@=A:A8@@?>?@?>;>@???@>>=>??@??>>>>@9<<,=?9;?>?=??>@9:??>:>>???>=?>>>>=>=?>?;08*:30-:=:9==4:5>6;?=>=8=>?=?=>=??>8>@1==@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:A7JJF<7F-AA-JJFJJJFAFJ7F?@>??@>>>>???@?@?5=@??>?@?@>>??>>????@??@>=?@>>>??=??@>>>=>>==,>?>>??>>>>>==>>9=>?=>=>>?>>>=>>>?@>?=>>@? MC:Z:12M1I138M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:FFJJJAJFJJJAJJAJJJAJ@??===?>>>?>>>?>=?6@<>???>=>?>>??>@@?>??@;@@???@>9>>@??@?@?:?>=8<>>?@???@??@A;???>A??@A???A@A@?;9<;>@??@@5?5&&>2@A>@@?AA?@@A???A??@@@@A?>A?@>9?>@??>>>>?????@?:???@>???@>>?@>>>?>????>>>?@>>>????<>>=>===7=>>>>=>?>>>>>==?>9=>?==;>>?>>?=?==>?=?=????@>?>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:JJAJJJJJJJJFJJFJFFJJJJJJJJJJJJJJJJJJJJJJJAFJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJFFJJJJJFJJJJJJJJJJJFFJJJJJJ@@A>B@4@A??@@@A?A@A?@@A?@A?@@A>?A@A>=@?@?>=???@??=>@?9???@>??>@>?????>>@??>?=>?>??<?>>?<=>===>?>?=>>>?>8=??=?=>=?>>?=?==??=?>?>>?@?>><= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:JFAJJFAF?>>>?===>=>=>==>>>>>?>==>>?>>>?>=>>>=@???@??>?@???????@:@??@??@??>@?>?????@??@??>?>>>>?????>@?@:4?@@=@A@@AA@?@?@A@@@@?@?A@@@A7=@BA>@ABA@9<;<@ MC:Z:151M MD:Z:50G100 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJ=>>?===?=?=?<=>==>>>>==:>>>?=?===>>=?===?===>>?>??>=>=>>>?>?>?@@>>?@>@@>>=<=?@>=>??>@>>:===.>=>=?@@><@?.@????<=>=>@0=??A@@=A><;A0?A@@=AAA@A@@A###### MC:Z:151M MD:Z:46G102T1 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJFJJJJJJJFJJAAJJJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJFJJFFFJJJJJJJJJJJFJFFJJJJJJJJJJJ7F7:0&817>4>>>=>=:3<>>@=@9&@>>>=>@>>?>=,8;;12/?>>=>@=;41>:>>?>9%)1?;;;;>===?=/=?>>?2=9>9><=>>==?<8?=>?< MC:Z:151M MD:Z:0A7A11G23G67G38 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:5 MQ:i:60 OQ:Z:###################################JA-77-F<;>=?>>?>?>;?>==>>>>=;?>>>>>=>===???>?>>=>>>>>>>?>>=??=@?????>@?7?????@??@??=8>????:6@?@6<>>??????@?=??>?@???=@>?A@@@A@7>@@9?A/@@@;;8@97@;?A:A>>:=4 MC:Z:151M MD:Z:37G113 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJFAJJJJJJJJFFJJJJJJJJJJJJFFJFJJFJJJJJJJJJJFFJFJJJJJJJJJ2:/>+<9*=<3+*9(7<2211>9&;+(<:<862+/>)26<7>8>-55< MC:Z:151M MD:Z:19T0T4C6T0G15T14T0T14T1T68 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:10 MQ:i:60 OQ:Z:######################################################################################################F-A@AAB?A@@@@??;@>)>>@@??@????@@?@;>?@@>?????@??@=?>?>>>?>>??@?@>@@9>??9?@>?@@>>?>??=>>?>>=?>>>??>>?=?=>?==?>==?=>>>>>???@@@??>=?? MC:Z:151M MD:Z:1A31G117 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:2 MQ:i:60 OQ:Z:##A<?@@@@?@?@?@??>A?A?@A>??????@@????@?@?>??@>>>>>??>>@>?>?>>>?>?>>@????@>===>=@>??@>>?=>>===:>==>==>>?>=?=>=6?==?>==?=>>>>>?>>?????@?>>@? MC:Z:151M MD:Z:31G119 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJAJFF7)3.48??@?;@2?>???@?=??>5<;=8;>>3>>:@?@>???@?>?>>>>@>=?<*>?>>>???>;??/99??>??>?>==?>>=>=>?===*>;=?==>@?=>?>>=<>>==?=>>=>>>>=@>?>@?@@??:> MC:Z:151M MD:Z:30G120 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:7FF7>>=>>>>>==?>>>>=>===??1;>>>=>>>==?>>?????????=?????@?>=?'0=>>>>??@@?>@?@<>>2????@@@@@>>>@?@@@(?@?A@@@A1<9>77>@@<@@@?6@?>:>>@@?>BAA@A@????<9:= MC:Z:151M MD:Z:0T26G123 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:2 MQ:i:60 OQ:Z:#AAAFJJJJJJJJAFJJJJJJJJJFF-@;7>2B@??@>@=@@@A???@7@@@@???????@@@??@????@?@???>>>?@>>?>??@????@?>>=1@;@?>??????>?@?>;??>?>>>??>?@==>??>?@=>>@><=>>>>?=>>>?>>>>?>@>@????@>@>B? MC:Z:151M MD:Z:27G123 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:JJFJFFAAAAF-JJJJJFJAJFFJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF-FAJJFJFJJJJJJJJJFJJAJJJJJJJJJJFJJJFJJJJJFJFJJJJJJJJJJJJJJJJJFJJJJJJJFFAAA UQ:i:41 AS:i:146 +HT2V5CCXX160630:1:2124:30147:38667 83 4 57194306 60 151M = 57194254 -203 AACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACA ?;<=?>BAAA=>BA@>?@?@???A?A?@A?>?????A?@?@@A@@@??>>;;>>>>?>>@>>>?>>>???>>@???>@?>??@?@>?>>=>?>?@>>>====>>?=>??==?>==?=>>>>>?>>>??>>?==>?>?>@?>==? MC:Z:151M MD:Z:23G127 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:JJJJFFJJJF<7JJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFF<=>??>?B@?@AA@A@@@A?????>@@@???????@@@>@A@@??@?>:??>>>?@>>?>??@????@?>>??@?@?@?@??@?>?@=>>???>>>9*???<9=?-=?>9==>>>>?=>>>?>=?2?>?>?>>>?@?@?@?@>>? MC:Z:151M MD:Z:23G127 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:1 MQ:i:60 OQ:Z:FFFAJJFAFJJJJJJJJJJFJJFJJFJJJJJJJJJJJJJFJJJJJJJJAAJJJJJJJJJJJJFJJJJJJJJJJJJJFJFJJJJFJJJJFJJJJJFJJ<-JJF<@A=.A@A'=>@?=<>@8A?>.?@??=;5;/:).:0?>9:4*=<4-/.4:0<>505('6<><>61>/.;4>1');*+.,:>=;0=5:9?0:0=8?>*;6:>:*=9>=<=0.<<<+><22/41921,:>1?+0><>>?:(>@?=?===???>?>>=>?>?>>>>>?>?>?@????@>@<>????=@;?@??>@>==>=????>@?@(>>@?'?;86@>;?8=?@??@@@=;>8?7@@?@A@@9<5>8>89+?;:=>9<526>5?@?=?'3.48,5-5'9<<89><9## MC:Z:151M MD:Z:14G59A56A13A5 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:4 MQ:i:60 OQ:Z:AAFAFJJJJJJJFFJFJJJJJJFJJJJJJJJJJFJJFJJJJFJJFJJFJ?>>@>>=@>??>?=9=>>>>?>>>>=:>???>???@??>@????@?>?@?@??@=>???9@??@@>>9?9??>?>>?>?<<=@??@@?@@A@2*?6?><;3<@?>>/=? MC:Z:151M MD:Z:9G96A33A10 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:3 MQ:i:60 OQ:Z:AAFFFJFFFAJJJFJJJ7AFJJJFAJJJ<?;=>@?@@A@@@@@???????@?@?=A@@@@@@A@?@=???A><@>>>??>>???>>?>@>@??>?????>>@?=>>>>?>>>??>>?=;>?;??@=?>>>==>=>=?==>=>>>>=>>>>?>===?>>=?==>>>==9==:?=>@<;@< MC:Z:151M MD:Z:9G130A10 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:2 MQ:i:60 OQ:Z:JAFFFFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJAJJFFFFAA UQ:i:82 AS:i:141 +HT3GGCCXX160630:7:2121:5375:47650 163 4 57194322 60 151M = 57194658 487 AACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTCCAGTAACGGTGAACGGATCATATCTAGCTAAAAGCCAGAACACCCGTTCTCCTGAATG <;)7@??>@>>=??><>>>>>?7=>5?<>?7?>@?>?>>??@?????>?==>;?????>??@?>>????@??@@?+;8?@???(=35@=??@'4*+7;?%/:;@7?%8@@?=@?@<@A2?@A@??>6368?9=?,3?<91@>?9)?<98;; MC:Z:151M MD:Z:7G84A6T6A21A9A12 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:6 MQ:i:60 OQ:Z:AA-AFFFJFJJJFJF?>?>>>??>??@????@?>??@?@>???>>?>?@>>?@>>=?>?>?@>>@=?=?@>>@>==?=>>>>>?=;>??>>>===?>>=?>=>>>==>>>>>>=>@?>?@????AB?@@AA@@A@@@@@A@?@@@@A?@@@@@@@?A>?>?>>>??>??@????@>>??@?@>???>>?>?@>>?@>>=???>?@>>@=?=?@>>@>==?=>>>>>?=>>??>>>===?>>=?>=>>>==>>>>>>=>@?>?@???>?==>?>>>>>>>?>>>>?>>?>>=?>=>>>>>?>>??>=>==>=>>?>?>@?@?>>???>@??@@???>?@??????:@???@??????>?A?@A7=>?@=@@@@@?@A=A@A@???A@@?A>??@???;@@@@@=BBA@@A=>=99; MC:Z:151M MD:Z:1G130A18 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFFJJJJJJJ;<=??=@@@?@AA@??>>@@@A?A@@@???@A??@?@@A@@@@@?>>=?@?@???@????>?@?>>????>>>=A??@>>?@??@@>????>>????@>??;@>??:?>?>???>??>?>?>>>?>>>?>9>?>>>???@@>?>?8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:JJJJJJFJJJJJJJJJFAFJJJJJJJJJJJJJJJJJJJJJJJFFJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJ?@@@9?;AA@??A*@@@A?A>@@?8?@A>?@?@@@@@@@@?>>??@>@???@????>?@?>>????>>>?@>?@>>?@??@@>???9>>????@>???@>??>?<@>??@>??>?@?>>>?@>??@=6/8>?>>@???@@>?>?8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:FFJJFJJJF>@??>>>>=>>>?>>>>>=?>=>><==?><>>>=>=>>>>????>@?@<>>>?>?>??@?>===????????>@???@?>>@??:=>>@?>>8@??1>@@@@)@@?1?@7?>=@>>@>&'=??:>@=>A36?@>;AA(3>A@<<55;# MC:Z:151M MD:Z:121A29 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:AAFF7FFJJJJJJJJJJJJJJJJJJJJFFFFJAJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJJJFJJJJJJJJJJJJJFJJJAFFFJJJJAFJJ-FJFJJ-FJF>?@?>>>>>>>?>>>>>;?>=>>>>>?>>>?9>3>>==???>?>?13<&;?9)?7??@???>>???=????>@???@?>?@??=@???@>>?A?@8@=<@@@A@A@A@*>3@=?;A@??@6@A(7-?/-9;:;### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJFJJJJJJJJJFJJJJJJJJJJJJFAJ7JJJJJJFAJJF7-F-FJ7-F7JJJJJJJJJJJAJJJJJJJJJJJJJJJJFFFJJJFJJJJJ7JF??@A??>?>?>>@????=>@?>?>>>>@>>??>>?=>>>??>>?>@>@?>>???@?@>@?>>>>>??>>9@??A>>>A@>@@@@?@@?@@???@??@?@@@@?@<@@A@???@@)8@>?@A@@?:@?@B>?BA@??A@AAAA@AA?==;@ MC:Z:151M MD:Z:0G124A25 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJ-AFFJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJ UQ:i:73 AS:i:145 +HT3HVCCXX160630:5:2220:30878:58216 99 4 57194337 60 151M = 57194415 229 TTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGTTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGG ?==>?????????>>??=??>>>>>>?>>?>>=?>>?>?>>>?:?<8?=:??=?;?<@?>=???9>??@??)@??+A?=?<>?=:>>@?;=<*.7@>@086>@:@@?A???&@@(<>*=*?2@################ MC:Z:151M MD:Z:105C17A27 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJFFJAFFJAFJAJAJFJJJFJFF+>27,?24%@<@<1=&*?3=:0?=?>:@@>>??;;=?:?=:@7;?>8@?>>>@?+>>55?.=?=81@4>>@7;<>>=>><==?=>>>>>96=?>?>?><>:?>>>?>>=>><<><=?>==@>><@=>=@=?=?>=;;? MC:Z:104M47S MD:Z:13T6A130 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:2 MQ:i:60 OQ:Z:#F7?>?@9?:?>>>?=?99>=><><>8*5;=.-/<8@?=>?>@:=588@7-,)-)9;((/6?)=>-+??;@-=@@>4@*.6=@?)650?>?30?:@0A?>11@?A@:&A6A?'@?>>>??>???>??=>>>>>@??@>>>@????@???@?@?@@?>@?@?@??@=>:???@???@??>@???A@@AA@A@@A??A@@@A?@@@A?A@@A?AAAA@@@AAA@A@@AB@??AAAABA@BA@AABBBBABABABA<@?:8=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJAJJJJJJJJJJJJJJJJJJJJJJFJJJFJJFJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJFAA@@A@@A=@@A?A???@??@>@??/?@A@?>@?@??>>;?@>??:??>@???>@0?@=@>?@;8??>>@>???=?@?>@@@???>>>???>@??>>>=/>>>>?>=??>>>?>:?=?>?>@???@>;:=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:JJFAJFFJJJJJFF<733>5;--,??<6;<1=92.5':29+$:824A@@=@?8A@??><@=;99@?@@?9=3+?=3%25<<@>;*?:?(><@?>>>?>:?>?@?@?>7:7*?9==8>=7+8<>?968>=8>>==(>=>===/>>?>?>><>;=?<:: MC:Z:151M MD:Z:23T3C0T49A28A20A22 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:6 MQ:i:60 OQ:Z:7FA--F7A---FFF7=?@?>>>?>>?>>=?>>>>?>>>@??>@@?>@?@?????@>>???@?>?@??>@???@@?@??@@@@??@?@@@>@?@A@A@@AAAAAA@@@AAA@A@@@@???;@@@A@?AAA@ABA?B@AAB>B>@ABA@BB>?>>?>??>>=>>>>>?@=>@?@?>:?>@@@@@???@>>??@@???@@?>@???@.=?>?8=@8>?A@@@?<<:=?A>?@?A?AA8?@?AA@=??@@@=>?7@>@A@>A@<2@@BB;>BAB########################## MC:Z:151M MD:Z:105A42 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJFJFFJJJFJJJJJA>>>=@>>?>>=?>>>>?@?>@?@?@@?>/=@>@??@>>>??@@>??@@?>@?=?@@;?@?=?@@6>A?@/<>@A?AAAA?@A?;@/:1?A=@=A;?@@96>&227@++>8?@;1*?@182,&95=A@@,B@<28+@<6?29?@56??>=.@@>>@@?>@@A?@=1?=@@>?<>-@??>@>>=@>;>?>?>>?<>?=>>@<=?=>>(?>>'=>@?><>?5=>?=9'?=>=?=>;3>=>=;>???=>=>??=;=< MC:Z:151M MD:Z:105A45 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:FFAJJJJF77FJFA-JFAAJJJFJJJJFF-JAJJFJFF-JJJFJJJJJFJJJJJJJFJJAJJJJJFJFJJFJJJFFFFJF-JJF->;<>?A@@A??@@???@@@??@=A>@>@?>>>>??>>>>>>=@>>>@???@>?>??=>?===?==>>?>?>=>>?>@>===?>?=@=>>>>==8===?==?>=<>>>>?=>=?=>===>====>=>>@=?=>=?>A>0>=? MC:Z:151M MD:Z:104A46 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:FAJJJJJJJJJJFJJJJJJJJJJFJJJFFJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFF-FAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:5:1108:20273:23249 83 4 57194356 60 151M = 57194088 -419 AATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTG ??;=?@BAAB@A@AA@@@@@@@A@A@AA>>?@.@A?@AA=;@@@@>?????>@???@@??@>@??@>>@???@>?????@??@@@@@@????@?>@??>?>>=>>>>?>=??>????>?=?>?=?>>>?==>>>>>>>>?>?????@?=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:FAJFAJJJJJJJJJJJJFJJJJJJJJJJAFFF-JJJJJJFAJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:6:2210:31050:28417 163 4 57194359 60 146M5S = 57194580 372 TTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGTATGTTTATCCTTTCTACAGTAATGGTGTACGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCATTGAGTAATTGGGAATCACAAGGAACATTCGGACC :<==@>=5?7(/=>/7.+-+-;=>=:=;>=?>*.9=>'9.:?>?>>@?9(==)<:>>>1<>>?:>=##################################################################################### MC:Z:151M MD:Z:39A27A1A46G29 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:4 MQ:i:60 OQ:Z:>??=?>>>=?>==?=?>??==?>?>??>@?>>?????>>@??>@>>??@>@@?@???>?????@>??>A?@@?A@A@A@9@@A@>>@@@?>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:-AAFFJJFFJJJJJJJJJJJJJJJJJFJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJFJFJJJFFFJFJFFJJJJFJFJJJJAJJJJ;<<>@@@@@@@??=@@A?A<2?>@??@?5@?>>>>??>=>??>>?=>=??>?@><>??>>?>>>@=>?=>>>;=?;@>@>=<>?>?=?=:>>>>>>><=?==>>==>>>>?===?=>=>=>======>>>=?===>>>==@>>>?@?>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJFJJJJJJAJFJFJJJF-FFFJJJJ7JJJJJJJJJFJJJJJFFJJJJJAJJFJJJJJJJJJJJJJJJJJFJFFJJJJJJFJJJJJJFJJFAJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFF<>????>>@>?>??>=???@@>?@@>>??@@???@@?>@???@@?@@?@?@@>?@???@>?@?@@@@?AAAAA@@@@AAA@A@@@A@=?AA@@A@?AA@@AAAAA?A@A1@@?:B@@@A@AA@BA?@AA@BBAABB@BBA?,B@>=:6> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJAJJJ-AAA7JJJFJFJFFJFAJJJFJJJJFJJJJJF-AFJJJJF UQ:i:0 AS:i:151 +HT3HVCCXX160630:3:1103:29264:65371 147 4 57194372 60 151M = 57193965 -558 AACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCC >98<@@@2<<>AA@@AB@A@AAA@?@@?>,2?2@A@@@?A?@A??@@??A??>@??A@??<@@>;???=??>@@>??>=>??>,?<=??=>?@9?@:??@>@=?>@>==>?:??>=?;<=>>>>>>?=>>>==?=7>?>?=;9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:JFFFAFA-<7AFJJFJJFFJJJFJ?>?>>@>??==>>>>>>>?>====>>>==>>>=?==>?>=>?>>=>>=>>===@>=>>>>>?>@?@?@?>>>@?>>@>>>?>>>??>?@?>@?>>?>??@??>@??=?>?>>>>?@@?@?A????@@?@A@?@:??>@??AA@@@><8>? MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJFJJJJJJJJAAJ UQ:i:41 AS:i:150 +HT27VCCXX160630:7:1215:25794:25288 83 4 57194376 60 151M = 57194206 -321 TTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGT >;<>@>AA@@>3*@@=?A@???@@@???@?<>A??>A?@?@>6???>>????@>??>????>@?@?@????@??>@?=>??>>:>=>?==?>>>>>>>?=>>?=>>>=>==>>>=>>>>?=>>>>>>>?>=>>>==>>>??=??>>A@=8> MC:Z:151M MD:Z:84A64C1 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:JJJFJJJJAFA--JJFFJJJJJJJJJJJJJFJJJJJJJFJJJ>>>>>>?>=;=>===>>=?<=<=6<>?>>;>;=?>>>>@>>?>?????@?;?@?=>>@<=>@>>=?>=>??>?@?>@?>>???+?;?>@@@>@?@9?>?@@??@7<<>?>@@?@A@?@@???@,4@A?=A?@?@@2=:== MC:Z:151M MD:Z:145C5 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJFJJFJFJJJJJJFJJJFFJJFJJFJABBBBAABB@@@@AA@@@AA@?A@@@AA@AA@A@AA?@A@@?A>@@?@@@@?@@@@@@???@@@?@???@?>>:???@?>@@??@@@@@?@?@?@?@?@>>??@?@?@?@>?>>??>>??=??>==??>??>?@>>@@@????@@==>?2?>>>?>>=?>>:?0=?:>>??=>>7>??@>>:+@?9<@@?:?@>?>@?1(<=%<1?:>+>???=;:;::??=);@?@===9?A?@@>@/>:@>?@??':?A@AA@A6(,;3??A:@@>=### MC:Z:151M MD:Z:73C1A50C13C10 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:4 MQ:i:60 OQ:Z:AA-AFJJJFFJJJJF-JJFJJJJFJJJ>????@?>=>>>>>==?>>=?==>??=?>>?>>>=>>>?>>=>>>?>???@@??@@?????@????>@>>>9?>?@>>@??????@??????@??>?>>????@?A????@?A@??@?>?@>=>A?=@?@@@??A@@@@BA??==<;9? MC:Z:151M MD:Z:73A64C12 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ?>==>9>>>==?>>=?==???=@?;@???>??>?>?>;>?@?@??@???@@?@???@>@>>>:@?@A???=?@?@?A@@@@@@A@@?@??@@A?@?A@@?@@@A>@@B@?AB@@@B@@BAAAA@+BB?A;>AA@0><;>9 MC:Z:151M MD:Z:73A64C12 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:AAAFFJJJJJJJ???>>==@>>>>==??>@?>???>;>7??@?@??@???@@?@???@????>@>>>:?>@A??@??@?@@A@@@@@@@@@?@??@@@@A?A@@?@@?AA?AB@@@B@@+A2 MC:Z:151M MD:Z:73A64C12 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:0@A@>7323*?>:>++,9)>><+)=?2'7*@=84.(14??4?48@=7;0=;?@8??4:01=1;?:>>?>7?@<(>?@??@>@?@>>??=?>@>;????=>?<=>>>=>>>>??=?>>>>>?==>?===>>>=;< MC:Z:151M MD:Z:17T6T5G12G29A64C12 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:6 MQ:i:60 OQ:Z:A<-A<7)F7JJF<<<77-FF@<@6@A@@=?1:?@>=?@@@9??><=0>>=>????>@@>=9?=>??????>@>?>>@?>???=??>==?>>??8??===>?>>??>>>????@?79>?? MC:Z:140M11S MD:Z:1C22A108C17 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:3 MQ:i:60 OQ:Z:######AAFJF@@AA@@AB@@?@@@@>@@>@?A?@A??A@??A>@????@???@>??@>>>@??>@?>??>>>>?????>???>>?>?@>;?@=?>>>?>>?>?>>>>=?=>=>>=>>>?=>=>==>=>>?=?>==>>?=>??=>>????@?@==?= MC:Z:151M MD:Z:133C17 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:#JJJJJJJJJJJJJJJJJJJFFJFFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJJFJJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3GGCCXX160630:7:1211:20253:48142 163 4 57194395 60 151M = 57194830 586 GGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGATTTCATGAGTTTTCC <===>??9>>>>>=?>>>?>=>?>>=>?>>??>8??7????4??????@>>>>@?5>@?*:?4554;;<=?2@@?>?@?=@?@=?=78?>@>??>??2;@8?>*=;@=>@?;;36?;?6+44:;;;??@@A=1;?,9=@@@@A@===;:7= MC:Z:151M MD:Z:65A64C4T15 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFJJ7JJJJJJJJJJJJJJJJJJJJJJJJJAFJ?@@@A??@?@??@@@@@>?@?@?@?>@?@?@????@???@???@?>?@>4>@>>@????????>=>@>???>>>=>>>=>>>>?=>>>>>==?>=>>===>>??>=>>==>>>==>?=====>>>>?>=>>>>@??A> MC:Z:151M MD:Z:126C24 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:JFJFJJJJJFJFAFJFFJJFFJJJJJJJJJJJJJJJJJJJJFJJJAJJJJJFJJJJFJJFFF7JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFF@???@?>??>@>??=>>>>>?=>?>?@>>>@@@@@@=??@@@?@?>?@?><7???@?<@@>?@@@@@?@?@?@?>=@>=?>@?@?@?@>???@A>@@A?A?@;?A@@AA@AA??A@<@?@A@:?@@ABBABAA@@A@=>>9<= MC:Z:151M MD:Z:59A64C26 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJAAFJJJJJJAJJJJJJJJFJJJJFFJJJJJFJJFJJJJJJFJJJJJJFFJJFJFJJJJJJJJJJJFJFJJJJJAJAJJJJJJJJJJJJFAJFFJF7FJJJJJFJJJFFJJAJJFFA UQ:i:69 AS:i:141 +HT3HVCCXX160630:2:1102:15574:69959 147 4 57194401 60 151M = 57194201 -351 GTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTC @79=>@@BABBBB:B<@B?BB@ABAAAB@@<@AAB@@AA@AAA=@>AAA@A@<<@>????@>@?@>>?>@???@@>@@?>>@?>@@?@@>>@>?????>>>>>?>?>?>>>>>==>@==== MC:Z:151M MD:Z:59A64C26 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:2 MQ:i:60 OQ:Z:JJJJJJJFAFFJF7F7FF<@?@@@@??@@@@A?@@:@@@??@@A?A@@@8;@@@A@@????9;69@A=>7:?@??@;(0?>?>>??=;7;.?@>????:3=@?>???????>??>??>>>>>==>=====>>>>>?====>>>>>A@=>;< MC:Z:151M MD:Z:57A64C28 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:2 MQ:i:60 OQ:Z:FF>=@?>9*;;><>(:7>8/4=>@?@.7891>>>;:///4;??4==???(<>=?<1>(=@>?.>;@>?<@A=?@/.+>)>>/*?@9?:?>??@>9+@################################################### MC:Z:151M MD:Z:119C31 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:AAA-FFFFJF7-<AA?>?@?>?>==?>>>>>>>>>?>?>?>===?>?=?>==>>>=:???@?>@@?>?@??@?@?@??>??@???>???>?>@?<>>????@@???>>>>>>@@?@@??@@A@@)>@@@@@@@A@A?@@@@???@?BABAA@BAA@=<:> MC:Z:151M MD:Z:47A64C38 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJAJJJJJJJJJJJJJJFJJJJJJJJJJJJJJ-AFJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJ UQ:i:82 AS:i:141 +HT3GGCCXX160630:8:2121:16691:62224 1123 4 57194413 60 151M = 57194625 363 TACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAAC ?;;>A??>?@?>?>==?><>>>>>>>?>?>?>===@>?=?>==>>>=:???@?>@@?>?@??@?@?@??>??@???>???>?>@?>>>????@@???>>>?>>@@?@@//>@A@@@A@@A@@@@A@A?@@@@???@?B?BAA@BAA@=<:> MC:Z:151M MD:Z:47A64C38 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJ77FFJJJJJFJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJ UQ:i:82 AS:i:141 +HT3HVCCXX160630:5:2220:30878:58216 147 4 57194415 60 151M = 57194337 -229 CAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCC ###########AA@7A>2BA>;@>0BB@BAA@B>>A:@>@9???=?9@?@??A>??????;><7@?>>>??>@>>@@=:??@=>?@>????8??>?=?>>>===?>????>>????=@?=;:< MC:Z:151M MD:Z:45A64C40 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:2 MQ:i:60 OQ:Z:###########FF<7F<-FAA?>>????@?@?@>???@?>?@?>>@???@??@?>?>?>?>?==;<=>=<9>>=>?====>>>>?>?>?>>>?>?<=>>>>>@?<>; MC:Z:151M MD:Z:106C44 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJFFJJJJJJJJJJJAJJJJJJJJJJJJJJFJJJJAJFJJJJFAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF==?????@>>>>?>?>>???>??>>>?>?>?>>=?===?>=>?>=@??????@@???@?@??>?>>???>?>@?@>??=@?>?@?>?@>>>@?>@????>>@????AA@???@A@?@A@???@???A?A@A@@@AABAABA@@?@>;:A MC:Z:151M MD:Z:105C45 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJ UQ:i:41 AS:i:146 +HT3GGCCXX160630:8:2101:5375:15162 1187 4 57194420 60 151M = 57194656 387 ATGGTGAAAGTATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAG ;4:9@?9==?9;>>>>>>>?>?;?3=*<=;>=?>5=>=:><>7>>?=?8*5?@??8>?9@?4=07,=??=??64*>@?:=>????>?9<=?>>?=>??;?=??7=@@?1?<0=@@+?:8@<?8;?@@@B@AA08.2A@AAB@AB@?@B@@?A@@@@>9?:???@@?@A+?@A@=A?A@@?A?@?A?>@>@??>@>@??>???>?>@>2??>:8>>?@>@?>>?>@>>>@>>>=>?>@>?====>===>>>>=>=#>==>=?=>==>?><>< MC:Z:151M MD:Z:40A64C28A16 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:<??>>>=?>>?>?>>??>>??===>>?=>>==?===?>==?>=?>==>??@?>???=>===?>>>:??@>@=?>?>=@?>>@?;?@>>>@>=>?>??>>???@>A@?????A@???@>??>=?=?>;@A@@?;A4<@?A@@?A;<><< MC:Z:151M MD:Z:104C46 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJAFJJFJJJA7JJJJJJJJJJFJJJFJJAJJJJJJJF??=>>>?>?>>??>>???>>>??>>>?>@>>>@?=?@?>@??????@???>>>@>>>?>>????@>@??>@??@@>@A??@@???A@?A@@@@??A@@@?A@:=?@@A@@@@@???A@@?B@>ABAA@AABAABA@@@BAA@>;9?7 MC:Z:151M MD:Z:101C49 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ7FJFJJJJJJJJJJJJJJJJ7FJJF?>>>>???>>??>>??>>?>>.=>>>=@>==@???@?>@?????>@?????>@????>>??9=@>@@@>@?>A@>>A@?@A?>?A@?A@@@@?469@@@A@@@?=@A@@@@@@A@@?@?B@BAAA@A@@A@ABA@@@BAAA@##### MC:Z:151M MD:Z:25A71C2C47A2 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:4 MQ:i:60 OQ:Z:AA<=?@@??@@@>??>>>?>?>?>>=?===9>=>?>=?>>>>>>??>>?@?@??>?>>????@>@=@=>>>@>=>@?>?@>=>@?>@????>>@???>>>?>>>?@?????>??????<>A@A@;@@@A@@=@=??@AAAA@9A@B@?<<:? 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MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJAJ UQ:i:41 AS:i:146 +HT27VCCXX160630:2:1121:19573:1854 83 4 57194508 60 151M = 57194302 -357 CACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCAT ?<<=<:3A??@???@@@??@A???>+@@@@A?>??@@??@?@?@??=@=9?>??????@??@>?????????>?@@@?>>5>?=?:???@?>?>??>>?>>?=>=>===>>>?>==>>=>>>>><3>>?>>?=>>?=>?>>>>???A=?@> MC:Z:151M MD:Z:17C133 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:JJJA<7-JFJJJJJJJJJJJJJJJF-JJJJJJFJJJJJJFAFJJJJJJF7JJJJJJJJFJJJJJJJJJJJJJJJFFFFJJ7JJ*2?22+@??>B@@>,0AA@>919???AA>>@>=A?>0;8;===5>9/0<9??;/7*8>????@7>3@>>@@??@=?>>@?=..=>@?>@?@=@>?>>>?>?>>????>??=?=>??;== MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:#####F<?@AA9@C@@@?-@?@@>@@A@@@B@AA?A@A?@AB?@A@@@@@@??@@>??@@@?????@?:?????????@>?@@@@?=?@???@>?????@?>3=?>>8?>>?=>?>?>@=>????>>>>???>>=?>?>>??>>?>??>?>>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:FJJJJJJJF:=8A?3=7,;9:;=,41-+6+?>4&'7<691=+64(>A'/=><1;?@1*?@>=?>>+>:2:8?@@>;<@<=6>643=6,;;(??>782,=?@?>9:>>?=>==:>A;>>?>9=?>?A=@>=>>2=>>?A<>>8?A0?=@? 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MC:Z:148M3S MD:Z:133A17 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:?:;>?@@A@<239<:@;:A?A?>@?@@AAA@?@=)9)A?>AA@???@??@?9//=>=>=@?@?@>>?>@@??7?@@>>>=@;8>>@@=9<>@><@>>>??>@>??@?@=>@?@?>??>?>>?>>>?>>>??>>>@@?>=@@?@==?? MC:Z:151M MD:Z:133A17 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:AA>;7@@>0+/=?>@<-><<<>6?@>><9>>;*=::?>>=9;9/6>@83>>??>>7<;/<=>?>=>;=:@<9<7)3>;96:9=>>:,=<=>9=?=>0=><$<#=>8==>=>><>>>:=?.=?????===?? MC:Z:146M5S MD:Z:106T44 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:1 MQ:i:60 OQ:Z:<7FA77---AF77FFJJAAA<7JFF---AAFJA-JAAAFAJJJJFAAAA-AAAJJJF7AA-7JJF?2A@;>:?><>A?4>>)?>?;/?>;?><=>=>?>>?<@>?>????@=??>@??>=6@>?>>>?>>@>???8:4?>>?>?>====?:>==?=>?=?>=?>=?>=9?>>><>=>;?>>>>>?>?>?@?>=@? 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MC:Z:148M3S MD:Z:125A25 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:JFJJJJJJJJJJJJA7JJJJF-JJJJJJJJJFJJJJJJJJJFJFJ7JJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJFFFFAA UQ:i:41 AS:i:146 +HT27VCCXX160630:2:2114:13778:17061 99 4 57194588 60 151M = 57194770 333 TTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGCTACAAGTTCAC >@?==>:??=@>>>>>>>>>>=?>>>>>>>>==?>>>>>>>=>=>>===@>=?>?>@??>?????=>@????????>>?@?????@?>>?@??9>>??????>?=??>????@?@>>A@??A@???@@@A@A9=@?A?@?A@@@?A?=<<> MC:Z:151M MD:Z:124A26 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJA97?,?A;?A>(=-??+5??9?<@3&>1>:9+60>69??=;?@>;>@>?>@>@6;)>@?@?>>@>?@?@@68@;<@=>>@?77:?=@?>>><1=:8*???=>@;;>>A=@??=>?@>=>?>?>@>@?>?>?:=9@@>?>?A? MC:Z:101M50S MD:Z:13G137 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:60 OQ:Z:#######F9>?=?>>>=>>=>?>??=>8?===>>>@??>@?=?>@??@>>:0=>?>@>>=#>????;>???@?>-<>@>>@@??@>@@7?:@@<>:?>@A??@A@@??A>>@@A@@@?A;@@??@@>A@@=B@;A?@:<<6@>BBAB@ABAABAAA8A@A??>A??AA@@AA@@?A@>9???A??@@??@>??@@@?@??@@@@??@>@>=>@?><>8@>>>@@>>???@@???@?@??@?@@?@@?@??@????>>?>?>>???>?>?@>?????@?@???@?>=?? MC:Z:151M MD:Z:41T109 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:?>??=>@>?>>>>>===>==?>>=?>=>=?=>?===?><>=@?????>??@><=?>?>>???>?=?@?>>??>>?>>?>>>>@>?>>@>???@??@??@@??@??A?@?@@?@@@@?@>=@AA?A=@A@AA@B@@@@=<;B MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJFJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJF?@>>@>>>@>?>???>>?>@???>>?>?>>?@>>?>?@>>;??>>?>???=>=>=>===>?>=>=?>==?>>>=>==?>=>?>?>?>>>??===>>?>>=??=>><> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:????@>@??@@????@>@>>?@>?@>@@?>>?@>>????????@???>@??@>@@=?>>?>>>?>>>?>>>???>>>>?>????>>>?=>>>>@???@@>?=>? MC:Z:151M MD:Z:114A36 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:FJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJAJFFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:7:2220:6340:69713 163 4 57194599 60 151M = 57194998 550 GTGGATTCATAGGGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGGTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTGTCTGTCGCT ==.;=?:>??@?)>>?==:?<<@??=@@??>??;@?7(?):;9>/<>>;>=>?<9=<2/./4.>?>@A?...<@/9>0907:?:-,<1;212+25;2;?8A@62;@A=?@??@?@@>?>?===?==??>>?>>>=?>>?>==?>>?>@>@>>5??@?@??@@@???@>@>>@@??@>@@=>>@@>>????09>?@??;=@??@?@@?@@?A@@@A@@A@@@@A@AA@@@@?&+?:>AAA@@@??BAAAAB@?#### MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:AAFAFFJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJA7FFJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJF-7FJJJF???>?>>>>>===>==?>>=?>=>=?=>?>>>@?>?>?>?>?>@?????>??@?>>?>?>>@?>>?>?@@?>@@??>?>A????A?@??A?@@@A@@@@?@@??@@?A?@?@AA@@@ABAAAABB@B@A@@AB@B@@AB@?@?<97? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:AA-AAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJ< UQ:i:0 AS:i:151 +HT3HVCCXX160630:1:1216:12753:52731 99 4 57194601 60 151M = 57194828 378 GGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGNTACAAGTTCACTTTCTGTCTCTGA ?;;???@?@?>>>>===>==?>>=?>=>=?>>?===?>=?>?>>=>=?>>??????@?>>?>?>>@??>?>?@?>>??=>??>@?>>>@??>>@????@????@??@@???>A@?@A@????@?>?#??>@@@@?@A?A?@ABA@@?<;9@ MC:Z:151M MD:Z:111A14C24 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:AAAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJ#JJJJJJJJJJJJJJJJJJJJJJJF UQ:i:43 AS:i:144 +HT3HVCCXX160630:1:2114:22465:26800 163 4 57194610 60 151M = 57194901 442 GTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCTCCA =<:>?>==>==?>>=?>=>=?>;?>>>?>>@>@??>?>@>>???7>??;>>?>>>>@?>>?>?@?>>@?>>:>?@@??>A??=?@@@@@A@@@@@@@@@@@?@A9<,AA@?@@A@@@A@A@BAAA=AB@BA>.??@ABABAAABB@:=98? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJF<=?>>@??>?>=>=?>>?===?>=?=?>?=>=?>>>>>>?>?>==?>?>>@@?>?>?@?>>@@>>??>@>=>>@??>>?????@@????@???@?>@>?>?@@@?@@AA=A@AA?@?A@?@A?A??@A>@@A@A@ABAAAABA?@=;@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJ7>@=A>>@@??@>8*>=;@@<@=?>?@=@?<8??@??@>=.?>/@?@?>@@@?>=@??@@>>?@??>>><>>>;>??>>??>?>?>?@>@?>@@?>>@3 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:>?=?>>?8==?>=@>?>>=>=???>>????@????>?>>@????>???>>@?>>6?>:???@A?@??A?@@@A@@@?@?@@@@??>@A>>AA@@@@A@@@@AA?A@@@A@A?BAA@B@@@3=A@AAAAAABA@BAAB##### MC:Z:151M MD:Z:94A56 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJ7JJ:<==??A@A>???A??A?@?A:@>@@@?@@?A@??>>?>?>??=>>?>>?@>>?>???>>>?>?>>?>??>?@>??>@?>>@>?>>>==?>@>>=>@>?>?>>>=?;==>>?===?>;;?>?>>?>=>=?=?>>=?>?>>?A@;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJFJFFJJFJJJJJJJFJAJJJJJJJJJJJJJJJJJFJFJJJFJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJJJF49@A?@@A@@?8==@@A@9?@?@@>@A?9@<@5=>9?????@?@??>>????>??<9??@???@???@>>9@?@?>?@@????>>@>?==>?>?8*=?>>>>>>>?<>?>>?;>==>??==?::; MC:Z:151M MD:Z:87A63 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:1 MQ:i:60 OQ:Z:##JJFA-A7-7<-6'>A=7-:@>6?5(@@@@@?@@?5@A@9996@@@AA?=2.%5*;3A=;??@?@??=8(?=5*1???>??@??=:>6?@;@???@=7?;>7>@>?==>@>?<<>?>=<+;+>>?>>>>?>>?>>?>?==>?@==?::; MC:Z:151M MD:Z:7T79A63 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:>>>?>>?>==0>>*<=>>=>==>>>=>====>>>@>=?>>-3:=<>:;?>4;2?>@@77><<>>?@;3'>??>??9@??6=$'9=<@2/'(054/?=*:# MC:Z:151M MD:Z:45A27A24C52 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:3 MQ:i:60 OQ:Z:>?>>>?>><<<>#=<<>?=?==?>?=;===>?>@;?@?>>@=>;=>>>??>79?>@>:@??4:;@<'9>???>?=????A?@?@=@@??@@?@@:@A?@@????A@?@>????@@@@?6@A@8AA@<+7>AA.;@A@,'?7@<<<7A MC:Z:151M MD:Z:16A134 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:>?@@:>?>??>>>>>?>>?>?>>?>>>?>>>?>?@@@@<=@?<>>=@>97/=3%3;%3>@>??8>?@@?8>.9<;=?>>@26=9>>@>=>=??>?7@%9=??@=?@9>@7=;;>>>@>.>=6>?>@AA>;@A@@0-6??@?:5>><:# MC:Z:24S127M MD:Z:59T40T50 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJ??>===?<=7=><====>?>=>==*6<>?@?=98?=*5?=9?;;=?>>8;????/?:?<6??<@:7>@?6>:9@?>??2;?@A@?:5?@?@80:;>89,91>66'01:,70<3,-,91;87<49??<0-5:=8 MC:Z:151M MD:Z:1A120A28 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:2 MQ:i:60 OQ:Z:A-A-AFJJJJJJJFFF=<=?@@@@??>@@???@@@@??@@=??>>?>?8<@;>?9?>?>=?>??9?<>>>>?=>>>?@???>=?>>=??>????>@>?==>?9===8>>=>>=8>>>?=>>>===>?>>=>>>?=>>?>=7>?>>=>>===>>>>>?@>==? MC:Z:151M MD:Z:104C46 PG:Z:MarkDuplicates.10 RG:Z:HTJCG.5 NM:i:1 MQ:i:60 OQ:Z:JFJJJJJJJJJFJJJJJJJJJJJJJFJJJJJJFAFJFFJAJFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJJJFJFFJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT27VCCXX160630:1:2211:3721:50726 83 5 156355131 60 151M = 156354727 -555 ATGCTGAAACTAAAATACAACATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGC ?<:>?@?@>@@??:@@@A@>=@@@@=???A?@A@A<>????>>>>>?>??9?>??>:@<>>>:@?@?>>>?@>?@??>@??@>???=>=8>?>?>=;==>?=>>>===>?<>=><>?=>>?>?8>=>8?=?>??>?@>@>?@@:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:FJFJJJJFAFJJJAJJFFFAAJJFJAJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJFJFJJJ1A@@@@>???@?@A@A@>?@??>>?=>?>@>>?@>>>>?@?@??>?>>>?@>?@??>@??@>?@>>?=8>?=??>>==>?=>>>==;>?>>=>>>?=>>?>=8>?>>=>=?==@??>>@??>>A@<>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJFA-FFJJJAFJJJFJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFFJJFFJJJFFJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:3:1224:9283:12859 163 5 156355133 60 151M = 156355519 537 GCTGAAACTAAAATACAACATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCT =<=>?>==??==>>?=?==?>?=?===>?=8>>>?>??;>>999>==;<9?>@>?@??)=;@>??>?=?>>>?@??@@@:?@@@>?@@<9:8?@?@@@?>>A???1+???@@@@<<@?@0<27?'6@>?AA?@?@@B+=?+B?@=@?<86# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJFJJJJJJJJJJJJJJFFFAJJFJJJFAJJAAAFFAAAJJJJFJJJJ-FAJFJFFJJJJJJJJJJJJJ7JJJJJFJJ<7>>@?>==@>=>==>>>=>====>>>?>?7>>???>;?>?@>@?9?>@@@?@??>@@?>???@??@?>??:?@>@?><>>>@@A@@AAA+>>?5>@;A?A@?==@@BB@A@BA@?><:D MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJFJJJJJJJJJJJJJJJJJJJF7JJJFJJ7JJFJJJJFJJJJFJJJJJFJJJJJJJJJFJJFJFJJJJFJJJJJJJJJJJJJ>=?==?2<7?=<<=>>>?2?>>><>>?<.,:??>?3?>@??9==?>&5=2>3>???9:9@<.3:;;@8+=?*=;72(8???>@*.276>=7==@@>*84117&3?=?>A?%8->->1>@;??=?@############## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:?@?>>>>?=?>=?>?=?>>>>>=??>??>>>??>??>@??@??>;>@@?@@?>?>>>?@>?@@@?A@AA?@A??@@;@A<@@@???AA?@@@???@A@@?@@AA@A@A@?;ABA<>A@@@@AAB@ABA49@BB@==96# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:AAAAFJJAJJJJJJJJFJJJJJJJJJJJJJJJJJAJJFJJJAFFJJJJJJJJJJJFAJJJJJJFJFJJJJJJJJJFJJJJJJJJJJJJJJJA=/<6:;1<@;??@@<<3+:2?43)>)4=:@><8@4>99;@9:.;>3???@A=?@?:./6-9:=>6.<<8:<28;2(=;02)-='3:>;)@>=:>?;7=08=<<>>9'==5>>?8=?>-*@394>>654@=@98>@?@=??9=@?9>?>/<57==>:=>>>?@??.@?>=7/9>?>>?:>=>=>>>?>>>>>><<0>?@<:<0 MC:Z:151M MD:Z:4T0A18T35T82G7 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:5 MQ:i:60 OQ:Z:###################################################JJ@;??A?>A>@?:@?;@>@@>?>>?@??@?>@>>>?@>????=?>?@=?@>?;<9??>@?=2==>@>?=@>>=>?>>=?>>?=?>?>=8>?>>=?>==<>>>?>=>>=>>?>=>?=??>>?@=?=@? 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MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:#FA7AAA@>0@>1C2@A?>>A>??@?A@?A?4@>@A??A@?:>?>?@?A>>>?>>=>???>=?@>>@>=>??>?>=@>=??>?>>???>?>>>@>>?>;>?0 MC:Z:151M MD:Z:10T140 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:#F<:-3:<>/24&+;;241=6/*?<>?@>7>>;1?=2?<,.=0)=6?=6>>>>)<<>?>??==>?>>9=?:=50>#<:>;5,=?=,>>>>?=>>>=>>==?=>#>==>=<<< MC:Z:151M MD:Z:20T2A13A8A4T62G27C8 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:7 MQ:i:60 OQ:Z:##############################AFAJA<7--<7A--<<))-F7)-7<-7-F<--AFJFJJ=>?>>>=>>=>>=>>=>??>>???????????????????>>>??>??????@??????@?????A@?@@?A???@??:???@A@@?@@@@@@@?A@@?A@?@@???@@ABAAAAAB;BAAAB@BAABBAAAAB@BA@>;97@ MC:Z:151M MD:Z:54G96 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFJJJJJJJJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ?>=A???@>@>>?>@>>>?>>?>?>========?>?>=?>==>>>?>>@>?>@??>@?@??@??@@?>9?????>@??>@?>>>>???>=@??@?????@@??A@@@@@@?@@?:?A@??A@???@,??A@@=;;; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJAJJJJJJFJJJJJJJJJJJJJJFAJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJFJJJJJJFJJ-FJFJJJJAF UQ:i:0 AS:i:151 +HT3GGCCXX160630:8:2114:8816:8640 147 5 156355394 60 151M = 156355225 -320 CAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACT #<4?=@A?@98AA<@A@A@@@@@@@@>>=>=@>(0?@=??@AA8A@A@?=AA@@@@???@@@?A@>??=@@??@??:>>>?@?@>??@>????@>9?@@>>@===>>>@=>?>>>>=>>?>>>>>?=>><>>>>>>>>@>>??>>4=; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:#F7AJJJJJ?;=9..6./2;<9.A?.-/7>>0=.?>>?<1>0>;<>;/660?=@?96>>=?=;@<<;=<8<;;<58;)?=;?>>>;@=/<<7:=<0;5?=5>9<=?1=2>?5>22>???4>:/= MC:Z:151M MD:Z:5A145 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:###F<-JJJJJJJ<-<>>?>@@>>>>>?>?+9>==9=>>>>?=*?;=)<:?8=>?>?4?*1(9<>>??9?>?>?.@:870=?@=?:?????9+;;>8???==(46+333>@>><@@?4269@A<@=8<:03:>################ MC:Z:151M MD:Z:141A9 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:AAFAFJJFFJFJJJJJJ-FJJFAJJJJJJF-FFJ-<<41-41%7<6@@??????>?A?@?>@=>><4>:6=@?=?@==-4??>>@>?>?>?>;?>??>?@?>??>65=5>?>@>?>@>>==>>>==>?=>?<=>=>=><=?==>>>=>=>>>=>>=>?==><>===>>?7==>>?>=>?><>@>>?>>?>?>========?>?>=?>>=?@???@@?@?@???@@?>>@7?=>?@?@@????@@?>@?>:???=@>@?=>@?>>=>A@@.AA>@@>@@?A@@??A=@@@@@A?@?A?@@??A=@?@1?>?@@@>=??>A@??A?38:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAFAAFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJ7JFFJJJJJFJJJJJJJJJJJJJFFJJJJFJJJJJFJJJJ7JJFJJFJJJJJJJJJAJJJJJJFJJJJJJJJJAJAF7JFJJJFFFFJFFJJJFF7=?>??>>?>?><========?+>=>>><<@+9<>+>?<@=<<@<<>>=@?@@><9<@@?>@.>1????==??><@?>>>>@@?>=@=@A>@>>>>=?=A<@=@@@@@@;A?@@>=A>=??=::??@A@>=@BBA@@?@<:9<> MC:Z:151M MD:Z:150 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:1 MQ:i:60 OQ:Z:>@?@>@?@??@>@???@?>@?>:>>>??>@>?>@?>>>>???>?@>??>>??@=@=>?=>>>?>?=?>>=>?==?=>?>?===>??>==>>?>=>@?@>>?@>=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:##########AJAJJJFJJJAAJJ7FFF77FAJFF-FJJFFFJAJJJFJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAAA@<;A01@BA?=<3=2@A?A?A@>>+@>?0A>98A@@>6@?<<)@A=?>@?@>>?@>?@>>??@>@>>@>??<=>@>7?;>?@>>>=????==>>>?>==<>?>=<>>?==>?=>>>8<< MC:Z:151M MD:Z:56T94 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:####AAJF<77F--AAF<<7-<--7-AA-FJFAFFJ<<-?@=@@A@BA@@A=??/;B@@@@A@A@A@@@@A@@?A?@@A>A@@A?A?@@A@?@@?:???@??@??>A@>>>????>?>>?@>>??@>@>>@>??=@?@>@??>?@>;@>??=?===>??>==>>?=<=#<><<>?==><;< MC:Z:151M MD:Z:0A133C16 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:2 MQ:i:60 OQ:Z:#A=<=;>=>>>@=?==?===>>=>=>??===?>>=?=?>>?>>>=>?==?>=9===>?>@===@>=>=;??>>>@>>@>>7????>>@?>???????>?>??>>@?>@>?>>>?@A?>??@A???A?@??@@????@?@>==:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT27VCCXX160630:5:2206:22759:8394 163 5 156355413 60 151M = 156355566 304 AAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGA <;;<=>===?=?<=?===>>=>=>?=?<><>=>?===?>9=>=??>?>>>=>?<=??=8>>>??<@=3>>>>>>>??>>?@>>@>>*>???>>@?>??>?>>>>?>@??>@@?A>?7<=@@A?????@?????@??@A??@@@?@>>=98: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJFFFJJJJJJJJJFJFJJJJJJJJJJJJJJJJFJJJJJFJJ7JFJJJJJJJJJJJJJJJJ-FJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFFJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJA UQ:i:0 AS:i:151 +HT3HVCCXX160630:1:1117:11353:67181 83 5 156355413 60 151M = 156355385 -179 AAAAAAAAAGAGAAGAAATGGTCANAAAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGA >89;;2=?#?=@=>@?@???A?A>A?@@?@>@?@?@?>@?>9>>>?>>@>?>@?>>=????>?@>?@>>??@>@>>@>???@?@>?>>=>?==?>>>>?===>??>==>>?>=>>>?==>?==>>?????@=<=? MC:Z:151M MD:Z:24G1G124 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:JJAJAJFJJJJJJJJFJF7FA-AJ#FJJFFFJJJJJJJJJJJJJFJJFJFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFFFAA UQ:i:43 AS:i:144 +HTJCGCCXX160615:5:1207:15087:5897 83 5 156355413 60 151M = 156355154 -410 AAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGA >;;<>???A@A@?A@??>@?=?1?7?;6?A?>>@>?>@?@??@>;>>?@?>@?=8>==>?>@>?>@?=>>??>>=?=>?@>>>?>=>==?==>>>>>=>=>=>>==?==>9>===>>?>==>>?>==>=>==>>===>>>>>?A:<;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HTJCG.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJFJJJJJJJJFJJFJFJF-J>?>?>=;>>==>>=,=?=>=>>;>>2<>>>=<:<=9=>@;.<9<@;?<;'(-9>/;=>?>==8>>>;>@@9=@>)=:>5?.3/=>>?@?@>A@=>??>=,??A>>;@@@@)1>B?A?@BA9@???@0=;:<# MC:Z:151M MD:Z:121A29 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:1 MQ:i:60 OQ:Z:AAA-79=>@@>A@@@@>?6,:>@A@A@@9AA@@@A?@@A@A@AA?<@@A@?@A@@;>>>?@?@>??@?????@???@@>?@>>???>???@>?@????>??@??>>?@>?@>>>?=>>>>>>><>?>?>??==>@>?:7< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:JJJFJJJFJJJJJFJA-AAJJJJJJAJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJAJJJJJJFJJJJJJJAFJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:1212:29274:72912 147 5 156355418 60 151M = 156355219 -350 AAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGT >99=><@14=;112>62B@@?,<9;28A@A?A=B>>;>AAA=0A:AA@=A@@4?>??>@=A@@@@?@@>>@@=@A>>???>6??@>=@?8?@???@???>?@=?8?9????@????>@?>>>@>?>>=?>><>?>@?@?=>>@??:;= MC:Z:88M1D63M MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:FFAFF7A--<7---<7-FA:09B?=A;@<,?;A>@2@A<;>>??@?????A?.?<8@;?:<0??84585/>:@?@=/<:?-<=66)5:)>6>:/-'-::-=,@=<-9>0>-<88635.-6-:>4789?1==>>>@==0>8=:< MC:Z:151M MD:Z:3A2A30T58T6T47 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:5 MQ:i:60 OQ:Z:#######################A-?=>???=>?>?=?=?=>>>?===??>=?=?>>?>>>>>?==?>=8===>>=?=>>?=====?>?>?@>=@>>>@@??>>@?????????>?>??>>???=>?>>>?>@>>>>?@>??@?@??@@????@?@?@A??>A?A?@@?A?<;>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFFAJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJ UQ:i:0 AS:i:151 +HT2V5CCXX160630:3:2212:17746:63771 83 5 156355426 60 151M = 156354910 -667 AGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATA ######@?/ABAB@A@@@@A@?=??>@@@@@@A>?@@?@?>@?>9>>>??>@>?>@?<>>???<>?@=>@>>???:@>>?>?>:>>@>@??>?>=>@>????>==>>?>=>>=?==>>1==>>=>>>?=<>?>?==>=?@>>>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:######JA-JFJJJFJAFJJJJAFJFFAJAFFJFFJJJJJJJFFJJJJJJJJJJJJJFJJJJJ>>?<==?>>=?+?>>?>>?>>@>>:?>>??>@>>=@=>=>>???7??>>@>>>???*>>>>>??<>??>:=??)7>A@:@?(>?>>@A>>???A???A==??>?@?6?@A>?@B?B@@>8>=5;<## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:AA-FFJJ-FFJJJJJJJJJFFJJJJJJJ-FJJJJFFJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJFFJ-FJF3.B@@?3>6/2<1=8@??A:;?7<@9>75?>?/8@)79@?>>>=;>6=??<8@>=??=;;<=@=/=>-?>><=?>=.;;=0>5.?===>>=>><.>?>=>>7<<=>6=<=;>=>>>?=4>?7=;=?;64=>?@?;>@@>;>4 MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:#####JF7<--JJJF-F7--<-A0=B=A?A?@@>?A@@A?@@>@A@?A??:>:>>%?A?@?A??>???>?>?@>?@>=??@>@>>@>???@???>>@>>?>>?@@?>>?>?==>>=?<=>?===>==>>>?==>?>?==>=>?=>>?>?>>;>>??><=? MC:Z:151M MD:Z:37C113 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:7JJAF-<@??>>>=?>=?>=9=>>>?+9>>=?>====???>@??=8==?????>>@??<>??>=?>@>?<>>@?<@??>>>??@?>>>@@??:?????@@????A?A?A?@@>8;?@>=??<>?<@?@?@@??328;>A@BAB>@A@?><7:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJFJJJFFJJJJJJFFJJJ-7JJJJJJJJJJJJJJJJF7FFJJJJJJJJJJFFJJFAJJJJJFJJJJFJJJJJJJJJJJJJJJJJFAJJJJJJJJJJJJJJJFJJF7AFJAFJF;'053,<@?4)=2*>11=:1:9@>5)?';>@@?==@;?9??8?@58;????@=:;?:(@/0?@??;;<<(?//;4?@?>>:&>?735469++=3>>>>>:>>7>;:>9?)>>>0>*>>>>>?=>8:; MC:Z:151M MD:Z:0T13G7G11G93T22 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:5 MQ:i:60 OQ:Z:####AAA>AA@;A?8@A>;A??@AA?@??A?@=0A@A>A@@=@@?=7=@?@A???@AA>???@>>?@>>>????=;?=>9;>?@>??@?@>?@==>?>=>>=?>>?=>?=>>?=>?>?>>;=< MC:Z:151M MD:Z:3C147 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:####JFAJJ>=>>=?===?=====>>>=>?==?===>>>>==?>>>>>>>>?=>=>?===<>?=?=>>??@>>>>?@>>>@>?>>??>>>>?>?>?@>>>@>@>??>@?>>@???>??>?@@??A@?A@A??@@?@?@?@@???A@@??=<;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJJ UQ:i:0 AS:i:151 +HT27VCCXX160630:8:1213:13088:37243 99 5 156355467 60 151M = 156355662 346 AGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATAAATACCTAAGCTAATAATTAATGAAATTGATCATTG >@<<7>=>??>?===?=====>>==>9==?===;>>>=;?>=>>>>>>>=>=>>==?>=;=>==>???==>>>?;=>@>?=>??>>>=?>?>?@>>>@>@>?9>@?>>????>?;>>??>>@@?@@A@?@@?@?@?@@???@?@;=<;<=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJFJJJFJJ7JJJJFJJJJJJJJJJJJJJJJJJJJ>>>>?>===>>?=>>8=>>=?>=?>>==>8=?>@>?@?>>????@>>?=>>@>@?>??>9??>>@>@?@?>?>?>?>??>>?@@>>??@>@@>??@?@??@@@?A@@A@?@@@@@@?BAAAA@98??@A@@@BA=88> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJFJJJJJJFF?<=?@/1==>>?@8;>?>??=???>@?>>=>;@9??>>>>?>?@>>>???@>>?==>>==>>>>?>==;?=>>>@?::@?==>?>@>>8< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:JJJJA<?>@@>>?@?@???9>??=?>=???=?>?=?=???@@??@@@@@@?@??>@?@@>?@?:@>?>@?>@?@?@@>@@@?@?@@???@@????@@>@@>>??@??A?@?AAAAA@A@@AA?=AAAAAA?@@A@A@@@BA@AB@@BB@A?>;;# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:-AAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJJFFJJJJJ# UQ:i:0 AS:i:151 +HT2V5CCXX160630:2:1217:21531:16920 83 7 4490617 60 151M = 4490444 -324 GATCAAGCGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCT @:;=>AA>@?:???>??>????@@>?@@>>?@????@>>???@@>@@>>>?@>?@>?>@@?@@=?=>?>==>>?>??==>?>>==>?>=>?==>?>>=?>@???>?><>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:6:2108:20963:71770 99 7 4490618 60 151M = 4490703 236 ATCAAGCGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTG ??=?=??8???=?>=?>>=?=><>=?=>1>>=>?>>?>>>>==?=?>=>?=8>?=>@>>@>@=?>=?@@>?>@?>>=@?=>>=?>?9=>>?>?>??@?>@@>??>??>>A?@?@???@A@A@>?A@?A@?6=A@:=?A@?A@??=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJFJJJJFJJJJJJJJJJJFJJJJJJJJJJF;<=@@>??:?@??@??@=@>@?>?@???>??>><9?>>>>?@>?@>>>>?>?@>??@??@???>>>>>>@>>??>==>?>?>>>?>>??==>?>?>?=?????@???=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AJJJFJJJJJJJJJJFJJJJJJJJJJJJJJJJFFJJJJ=.<4%5(80*??>>4<=>><):?>;@>;=<)'(=.3>5*>?=;>72>>9>>>*37>3/+>=<1>>.6>7;;&07=<>?=9:19??=/2;?< MC:Z:27M1I123M MD:Z:3A17T129 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:2 MQ:i:60 OQ:Z:#########FFFFJF7AA)66=:?=<.@>?@?@A??@?;@@??==>?>?>@7>?@?>?>??>>>;>>>=>??;?>>>>==>?@>>>@?7?>>@>>??>=8??===>;=;=9?==>>=.>?===>=>>>==?==?>=?>/>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:JF8=@>>@>=@>>=??>9==?=>>?=>>>?>?>??;==>=>?==<=2>>==>==>>?=??=>?<==>)@>>>??>>>>?@??@>>?>??>@??8@??@3>@?>>?<>?7@?@??>=@@&:;?A@><:= MC:Z:151M MD:Z:66A50A33 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJ:9<-@BA?A@B@@@@?@@A@?@AA@@A?A@@?@@@A>>@?9???>??>?????@>??@>?>@?>>>?>>>>>@?=@@>>>>?=?@>?>?@??@=@>>@?>=>>?>>?==>>>>==>>>=>?==>>>>=>=?>>><>>=>?>=>??@><=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:7FAF-JJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:3:2107:18335:57969 147 7 4490632 60 151M = 4490402 -381 CTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAA #####@1?A@AA@A@@<693AAB@B>@@@@@@=:?@7@>@<*;5+1@><1=@@A>/=?@?7?A>>>=?0?>?@?>>?<>?@>?9????>,?>>??>>?>@??>=;<>?=3-:?;>?:>:<(=>=?=?><>=>:=>?>:>>>@>=>?>::== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:#####A-JJFFF?A@?@>@?@@>?@???>??>>>??>>>>?@>?@>>>>@>?@>??@@????@>>=???@?@?@@>=?@>?>>>?>???==>?>?>?=?>>>>?>???>>?>@@??@?@??A? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:FJJJJJJJJJJFJJFJJJJ?<=>A@>??>>??<=@???>>>?>??>??>8>>>?>@?>?@?>?>;?>?>@?>>>>??>??<>;?@?=??>?@?@A@?@@?@==?@?@=A@?@?A?@>7?A??@@??@>;@?@@A>A??A?@B?@@B@AAA?B@@@A?>?>=?>:=>?????;=5;<<@??82.7?$>/=>??>??/=18(>;:/.9>>=--=>:AA??:?:?AA>:?A@@@;@A@?A;9?@@>?;?A@AA@A?B@BA'5A?59?@3A?>?A?>????@???>>>?>??>??>9??>>?>>?=?>@?>?@?>?>??>>>???>?>?????>=???>>@:??@??A@>@@?@@??@@@@A@?@?A?@???A>?@@@AA@B@@?A@@AAAA@><;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJ7JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ;=?><>#>>>?>>>;==?=?>=>>=8>===?==@>@>0>?>?>?;4==>>>??.3=:>:,;7<=->?@???=>>>>??>>A@@?>@?@@@@@????@?A@@;@:=?A??AAA?@@0>A20<2=@A97## MC:Z:151M MD:Z:8T142 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:1 MQ:i:60 OQ:Z:AA7FFJJF#JJJJJJF???@@>@@>>>?@>?@>?=@@?@@>@=>@?>>??@?@@>>?@??>>?@?>?@==>?>>=?=?>>>=?>=??>=?>>?>=?>==>==?=@?@@>>??=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:JJJJJJFJJFJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:2:1201:10490:41813 163 7 4490652 60 151M = 4490961 460 GCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGT <;<>??>==@=??==>98>?==?==@>?=??>??@??>@?>>>@?>>>>@@?@@>>?>?>>@?>>@??>??@??@?>>A@@@A@?@@A@A?>?@@?AA??@@@A@A@@@@@?3>?A@@?AABBA@BA+=>0AA;AABA@@AAAA?A?4:=# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJAFJJJJJJFFJJJJJJJJJJJJFAJFJJFJFJJFJFJJJJJFJJ-AFJJJJJJJJJJFJ-+>AB;@A?5??@??:9>@@@@@?=>=?@?A@@@>A@@???@@>@@>>:=?@?>@?@>>@?>>??@???>>?<;?>>:<0>>?>>>?>>>?=@>?/=>=>?@>=>>>?>=;>==>>>?=?>>?=<>>?@??@?@?:@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:F7A-<7A)AFF<>828;8;7;:>0@A@<@@@A@A@@@>A9:;??@AA?:>8:?AA?>?;2?@;A9?A@@?A@=5?@?=>-;8:>@9>>@?@97A??=-?>@?>=>:3*?==>?>9???:<@>@??<9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:##AA7<7@@>>>?@>?@>?>@@@@@?@>?@@>>??@@@@>>?@?????@?>?@>>?@???@>@>>>=?<=???=@?>??=?>==>>>@=????==>>>??>@??@>@??>;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:JFJFJJJJJFJJJJ7>;??==>A@?@@=?;>)=+??@@>>>7(<;8A?&??A?>>=>?A?==<+18?>@?5?@>;>>?8?8=2?:2.>>><>=8?:>+:1=>@9>@?>>@>>?>>?==>>==3=>>=<==>?>9>@@>@>=>>>,??>>< MC:Z:151M MD:Z:49T101 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:AJJJJFAF-JJJAA7JF?:A@>@;@@>@>@@>?@@=?=@A@@@@A@@@@@@A><@>>>?@>?@>?>?@??@><>>@?>>?>@??@>>?>??==6>?>:@>=>?>>=@==>?:=;>=>?>=>>=?>=>>=<>>>?=?3>?==>>>?>>;>??=???>>??>1@>>@>>?=?=??>>?>=>>>>>>?>>>>>>>?>>?>>>>@?>@>?;@@?@?>@??@?>>@=@?@@?1:@?@>>>@?>@@???@?@>@?@???>@?>@@?>@?@@@>A>??A>>@@@@AA@@@@?A??A?@A@BAA<9?==;@>9:@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJAA??>?A>?@>?>?@??@>@>?@?>>??@??@>>???>=>???>?@>=???>=@>?>>>=>>>>@?=>?>?>=>>==>==?=?>>?==>>>?>>?>>?=?>>>>??>9>@><== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:7JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:2:1205:24505:58848 163 7 4490667 60 149M2S = 4490841 325 ACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGCGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCCC <:5>@>=?==?=?=>=9=??>>=?>>>=?>>>>>@@?@@>>?>?>?@??>@??@@?@?>??>>????@?>??@@A?@?A@?AA(-<;?=@@?@@@@A@?@A@?@?@@????@??>>??>?@>>>>?>>@>>>@??@?>@>>??>>??>?@?>>>?>?>>>?>=?@==>@>?=?=>=>==?==?>>=?=>?>=?===>==?=>>?>=====>>>?=>>=>=>==>?>:>>?=@<:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFAFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:2:1120:7466:45435 163 7 4490670 60 151M = 4490813 294 CACCACCACACTGGCTCATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCC <=;=@>=?=?=?>==>">?=?>===@?===>@@?@@>>?>?>?@=?>@??@@?@?>??>>@??>@?>??@?@?@?@@?AA??@A@A@A@@?@@?A@?A@@?A@AA@?A@??A@@A@@@A@@@AA@AABBAAAAA@AA@B@@<=?;9?=?=?>=9?/<>;=><==??;:>>???@;85>>;(=;-5:9>;@@?;>>??>>@???@?(:<@?@:@???<<@=>?A3A?7@@1@@:@??A=@<>@??@>A@??A?@@?@A@@@?@A0>AB8BAAA?@?9:??A###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:AAFFAA?>?>@>>?@?>?=;>?==6?=>>>???>?>>?>?=>?8=5?????>???@?>??@?7@@?@?>?@7?>A?=?@>=@?>@?@?@>@??A?@?A?99=1A@?@@@@A6@=B@@@88=?@=@?@@A>>A@@A@A'BAA@A<<89? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJFJFAJAJJJJJJJJJJJJFJJJJJ7FAJJJJJJJFJJJJJJJFAFJFJJFJJAJJJJFJJJFJFJJJJJJFJJJAJJJJJJJJA=>?@?AB@?A@AA???@@>>;?@A?@A???>??>>???>@>=>=@>?=>?@>>?@>>??>>>@>>?<>>@>>@??=@>>@?>?9<=>==?==>?>===>=>=>?>>>=>>>==>>=8==>=?>=>>>===< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:#JF>@B>A=?AAAAAAAA@BAAA?AAABB@@AA??@A@@?AAAAA@A>@AA??AAA?A@?@@A@A@@>A@?AA>?AA?A?@?@?@?>@>>@@@>@?@@@>@?>>@==>?@@@@>>?@?@@@@?@@>@??>=?>=9>??>??=?>?><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:#FA5;@+7:8>964*8;;3????<5=2=@??@>>?@9=??>>@>?>>0@;>=?>><@>><@>9992>:8=>2>>@>?>?>?9==>>>>9>>>3===>;=>>:;9<=>=>==>>=9=;>=?>;==?8@?>9< MC:Z:151M MD:Z:1A149 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:######JJAAAA7FF->>?@;??>?>===?>====?>>?>===;>=>=><>>?>;>=>>==?>??@?>>>???>?>??>@>==??>@????>?>??@??>>?>>@??????@<;?>@?@@A@@@@@@@@@?A??:@@@?AA:?85?A:9<### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJA=2@>9@@+?@@==?<8=&2;87;6?<0;;@??<=):>>@>?>;8@>>?@>;?@>?>@1>>?>>>;=@7>=@=?@?=>>>?=?>?3===>4>;8<(>>=>=>==>==9=>>=?>2>=?=?=?2<=?< MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:###JJJF-FFAFJ-JJFFFJFA<-77AAF@>>@?>>??@??@>>????>>>??>>?>>???>=@>@??>?@?>???@>>?=>>?==?=;>>?==>>=?>>?>>?=?>>>=>><8=?>==?=>=>>>=@>?>>>? 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MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:AAAF<--JA-JJJJAJFJFJ?=A<*;?<6?=?>?->@A9<50@?5>9<@@??=@@=?>?A=??=@A=?A@>><@?@?@>@????>??@@??;*@@?>@=?=@??@>@?@@>>??==?@@??@>@>?>>?>>9==>>??=>>?>?>?=>>??@=:;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:JJJFA7--JJFFAAFJFFF-7JFAJFJF<7FJJAF77F34'??9A?=A???>??=A???A@@=??A??@=>?@@@@:><>>?>?<>>@==?@>:<=9@>@>>??>>?2=@=<=@=???>@:>>>>>>>8??><=>>=7>=?>>>==>=8<>>=8=>>=>>=>=?=@;?=>=?>?==98< MC:Z:151M MD:Z:12T138 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:JA<7AJJJJF-7-FFAFJFJJJJFFJFJJJJJJJFJFJJJJFFFFJJJAFFJJFJJAJJJJJJJJFFAAFJJJFJJJJJ;@3A<=B?A@<<=?A<>A?@?AAAAA?A?@AA>>@@@=@>>;?:;???=?@8=>@?9>@>??>;<(?8>@@>9>;@@=@>=4?>?@=@><@==>>>??>@>>@>?=<;=>==9=?:=><>?;=?@?=A<*B????@??@???A@???=A????>??@??@?>>=?>?>?/?>:?@>>?>>?>@>=>?=>>=?<8>???=?<>=?>>?=>=?=>>>?=>>:<<>=9>==8=>2=>>;>=?<>=?===?=@===>=>=>>?@?>B? MC:Z:147M4S MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:#JFFJFFF-JJJJJJJJAJJJJJJFJFJJJJJJFJFJJJJJJFFJJJF-JJFJJJJJAJJJJJFJJJJFJAFA4AA<=6?A=:=?>A??@???/@@@@1<6>@>=>:2>??>@48<@>=<>>>=>=>@>>@?>?@=?;7<@8>>?;>@>=;797>><1<<=;?9=>=?3>=?=>===>=?=?>=>7< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:7FF?==>=>==>>>=?>>?==>>=>>==>>>>?>=>>?>>===?>==>==>?>>=>>>=>>=@>>@??>@?>?>>@?>=?>>????@>===>=????>??>?>??>?>>9???>@????@??>???>@:????@????@@???==9>?@:=?>?>7=>=9:;?>9:;>?<=@7*/;2;;??*36?<2236=??+??>+(>=8>:3.>=?=>===>>><2==&=1?>=>>1=?<8; MC:Z:151M MD:Z:33T98T18 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:###JA)AA-7--7AFJA--7-:*@B@:@<@?A@1?>9<*:8/;0/?=:?@@83(??@?@8==.<>??>??@9<8:?<>>?=>=?=@=8?=@>3??>@=7@??@;?>>.>>>>9>@?>?@;>>??>9?;>=?>>=>=?====>?===?==?A@ABBBBAB@A:?@@B@A;BB?=AA@@@@>A@>;=????@@@?A<>5>?/??=?>:>A@@@>>???@@?@??@>@???>??>9>@>>@@>@>=??>@=>>?>??;>?><>>>?>>>?=>?>?>@>;;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:########AAJFJJJJJ>=?>>?@>>?-&8;@>???>>:*8>>>>?>>1?:;3):8+?===8*8>><>;%<7->;-;.6;==><<8=>:=/>=>=>=>=?=>=?>>===>=<==>>===?==>>>==>?>;:? MC:Z:151M MD:Z:46T27A12T2A56C3 PG:Z:MarkDuplicates.10 RG:Z:HTJCG.5 NM:i:5 MQ:i:60 OQ:Z:FFFFFAFFJJJJJFFFA7JJJJJJJJJJJFJJJJJJFJJJJJJJJ7-AFFJJJFJJF-<@??@@>?>=>>==???>?>?>5=?>=??==>@?>>?=<=@?>@<>>@?=>0/=9>;=@?;;>>-:???0??>?0/;9;796=@=;?*;4>17(;@?(?@>0@@@A<1>@@@@################### MC:Z:106S45M MD:Z:112A3A18T15 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:3 MQ:i:60 OQ:Z:A;;>??A>?B??@@??@@@@A????A?@@=1@??@@?>?@>??@>???>>@>>@??>@>?@?>=<>??@>><>?>??=@:?>=>>>==>>=9=>>=?>=>=?=>>?=>>?>>===>>>>>>>>>>?==>>>===>??>???<=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJF>>>=<>>>>?>=>=?<>===?==>=>::>>=>=;?=;?>>=@=??>=?=5>>==>>>???>==>=>>>@>>??@<@>>?>>9???=@>=?>@>;;?>>>@8?>>??>?=;???>?A?@=@@@???AA-66?>16,9172*<;>=:??8?<>>?>>?>>:7@))?>?@??<)-=2??<78;699>>?8?@8>7?>?>@7?>@??<>=@>=4=>?==>?==?9?==>=>?=>?@==>?=<<< MC:Z:151M MD:Z:7T5A10A126 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:3 MQ:i:60 OQ:Z:################AA77=@@?@@@@@A@@@???@?@@??@???@??@>??@?>>??>??@A???>??>=?@??:>??>@?7??@?@?@>>?@>>==>>>?>>>>>>>?==>>>==>?=>=>>>==>?????>@>?? MC:Z:151M MD:Z:132C18 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJFAJJJJJJJJJJJFFJJJJJJJJJFAJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJAJJJJJJAFJJJJJJJJFJJAJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJFFFFAA UQ:i:41 AS:i:146 +HT27VCCXX160630:5:2222:20882:28066 83 7 4490727 60 151M = 4490521 -357 CCCTTGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCA ####;>9A@@?A>>1?@A??8A5>=@;@>A>:;@=>@>>@??>@>?@?9;5+>@@>=>?1@?>>=>=??:?=>>=>>?=>>>*8=><>/>=>=@=?=?8/2?=>===>====>====?==>>>===>=>9<>>===>==>;?>?>@A+?)>:636@>=>==?>=>>==>>>>3=>==427??8;???;?<@?6;6:8<:=>?8<=>91;?9.+=/??>@>;<>>5276/<.43<<>*<<>+*8>20089?>>=:;>??A@@9=<@19<3<<5:A>>>8@;>05:8;####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:AAAF-A77-AFJFFJJJJJJFAJJAJJ@?>>?>>@>@?@@>>???@??@??@>@???>??>:>@?>@@>?>@>?>@>?=@>?>>>?====>?===?=>?>?=>>?>?=>>?=>>?>=>?>???>@>@?=>? MC:Z:151M MD:Z:125C25 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:2:1202:28280:67252 83 7 4490729 60 151M = 4490515 -365 CATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAAC @==>@A@AA@BBA?2A@?AA??A@=@?@@A@@@?A@?AAA?A@AAA>@?>>?????@@@@>>???@@@@??@?@???>@?>:?@@;=@>@>@?@?@>??@?????@?>?>>@>>>?>>?>?>>>?>?=>>?>>>?>>>??@?@?@?@?=>? MC:Z:151M MD:Z:125C25 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:FFJJJJJJJAFJJA-JJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJAAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT27VCCXX160630:2:2212:5710:46683 393 7 4490730 0 52M99S = 4490730 0 AGGCTAGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTACCTCAGCCTCCCAGATTGCCGGGTGTGCCGACCATCTCTTTACTGACAGAACCTTTCCTGGTTAAGACACAAACAAGTTTCGGGCTAATTTATTTGTCCTGTCGCGCCCGAT <>=?2>>>+>=;?=2+<=>>?>=9?><+2===9643;>@4?9<>>9>##################################################################################################### SA:Z:9,115009656,-,14S55M82S,0,5; MD:Z:1T3G32G13 PG:Z:MarkDuplicates.1N RG:Z:HT27V.2 NM:i:3 OQ:Z:AAAF7FJ-F@?>>>?>?===>>=?>=<>?>?=>>>>>>=?>=?>>=?>?>>=>>=>@>>??;?@?>>??>=??>??????<>>@>>9>>?=@?>?>@?@>?>?>??>>>>@>>>>?@>>?@@?A@@@?@?A@:2?@@;0<@@BAAA?AAA@?><:@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:AA??>>>???@=@??@>>?>>@??:;>@>???=>>?=6>??=?@>>>>>8=?4?=?>>>>>?>===>>===?==>>?===>=?=>>?===?>=>?>>=>>?===>>????>>=? MC:Z:151M MD:Z:118C32 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:1 MQ:i:60 OQ:Z:#####F77F<7FAFJ?A?@?@>>A=??=@?A>?@????>>@>?>>?>?6>=>?;???@>=?>?>?>>??>9>??>@?>?>@>>>@>>>@>?=>=><===>>===@==>>>====?>==>>===>==>>>>>>=?====>>?=>?@;;@< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJFFAJJJJJJJJJFJFFJJJJJJJJFJJJJJJFJJJJAJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:1:2122:19400:8868 1171 7 4490760 60 151M = 4490489 -422 ATCCTCCTGCCTCAGACTCCCAAAGTGCTGAGATTGCAGATGTGATCCACCGTGACTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCAT ##8;9:@B@?,2+45,?7+2@@@@@:@@?A?A@?@?;>?2?@8,@A?9?@?@=A???@@?>>>@>?>>?@>>>@>>@?@>>?>>@>???>>>?<=>?????=@>??=>>?>>??=>?>>?=><<<===>>>==>===<=< MC:Z:151M MD:Z:15C14G23C39C56 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:4 MQ:i:60 OQ:Z:##AF7:@A<,<<544&?/@<>?>2=2AAA??@@?A@@A@@A?A@@@?@@?:?@7&@A???>@??A???@@>???@>?>>@>>@<@>>>;;@>???<<>@?>>?=>>?>7?>=?=><<<===>>==>>===<=< MC:Z:151M MD:Z:15C38C39C56 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:###JJA?/;@A?@@?A@@A@?@?A@@>*@@?:?@7&@A???@@??@???@@?>??@?>;>?@>>>@>>@?@=<.?>@>??@>>>@>>>@=@>>?=>>?>>??=>?>=?=><<<===>>==?>===:=< MC:Z:151M MD:Z:15C38C39C56 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:##FAA@A@ABA@A=??A@?@+?@A@?3>@?@8@@<%@;??@??@@?;??@?A?98>A>?>@33?@??>>>??????>??>>>?>>>>??>>>????=?.????==>>?>?>?>?=>?>>?>>=?=>>>?>=>??>;< MC:Z:151M MD:Z:23G14A26G27C57 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:4 MQ:i:60 OQ:Z:7JJFFJFJJJJJJJJJFJJFJFF-JJJJJ>85A?;-<850@B@@@@@??@??;7+?=@??@@@??<.98??;(<7=?>?5?>@==?@??>>>9>>>>???>>@==;:??>?=4:>>??>??>?>??@<97;>>?><>?=>?>=?>@=>?>=>=>?=?>==>>@>>?=<:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HTJCG.5 NM:i:0 MQ:i:60 OQ:Z:JJFAFA7)JF<-FA7-JFJJJJJJJJFJAA-AFJFJJJJJFA-A<=>==@>>>>==?>>>?>===>=>=>?=>>>>=>==>==9>>>=?>=;=?=>=?===?=>==>?>===??=>=@>>??>?>>@>?9>????>?>>????>?>??>?>>?@>??@>>@>>A?A>??@?A?@??;@??8@@@??A@>>9:? MC:Z:151M MD:Z:84C66 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJFJJJJ:AAAA@BAAB@@AABBAABAAB@AAA@?@@?:?A@?@=?:?@@@?A???A?@@@@A??>??@>?>A??A@@>????@>??@>??@>>=@>???>@>??>??@??@@>?@?>@?@=>>?>;?>==?>===>>?>>>?>@?><<= MC:Z:151M MD:Z:83C67 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:#J;@A<+3>;;<9?,6@<>?;?@:?>@?>92@>??=???>?>@>>@>>?>@>>>?=?>>>>9<=>>???>>??>@>>@;?8< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:##FAFF7AA@AABBBB@?@@@AAAA@@A@A@@@?A@?;@AA?AA>A?@?@?@>??@?????@?????@>??@??@?@???@?@>??@???@???@@@??=@?>@????>>??=>??>?>?=>>>>?>?>>??===?>?>>???@???@A>>>>>?>==>>=>>?>.>=>>>>><>>>9@?>?>@?>>?>?:?>>>>>@>>>>=<>>>??>@?@>>?@8?>>?@?>.:=>>#?@>A?@@@??:A@@@A@?@@@?=@@?@@/=A@@A@AA@@?B?A1?>?@AA@@A==88# MC:Z:151M MD:Z:78C13G58 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJ-FFJJFJJFAJJJFJJJJJJJJJJFJJJJAJFFFJJJJJJJAAJJJJJJJJJFJJJ7JJAJJFF-AFJA#JJJJJJJJ@>??;>/@>?@=?>?;)?@?04=>??>?:@:;?0:@>@820?=?=>?9=7?1,-=?=???=@>>@9?<=+8< MC:Z:151M MD:Z:78C72 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:##AFA7--)JFJJFJJF??@===>=><>?=>>>><>==>:;8>>>=?==>=?=>5><:=?=>=>=?=>==;>==>?>=5>?>=>@=>==>?7>>>>>????>?:??>?==??=??@>>@,=?>?>5=@>@>=??@??>?@@A<>AA@AA??=2;> MC:Z:151M MD:Z:74C76 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:AAFAFJJJJFJJJJJJFJJJJJJJJJJJJFFFJJJJFJJJJJJJ7F;;;@>7@A?@?.@9;8<&>A?9@A?@?@?@>@>?>@???=?@>>>>?@>>>@>?>?@>>??>@>>@>>?=?>>?@>?==99'7>>>?@?>=8'<65=;==88/>2>===>>?>8>?>?>=>??=?>>@?>>?>>== MC:Z:39M1I111M MD:Z:70C80 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:JJJAJF7F>?A@?BBBBABB@A@A@?A@?;@AA?A@?A?A@A@A?@@A@A?@?A????@@???@??@@@???>@@>?@@>??@??@@@@?@?@??@??@@?@@@>?@??@?@>??@?@?@?>??===???>>??>??>???>@>?@?>>@??=?? MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:#JJA@@??@@?:?;@????@?@?@?@>?>@??>>>?>>>>??>>>@>>???==>>?@>>??>>>@?>>@??>?=?==>=?>?>>?@>?@>=?>?=>=>=>=>==?>===>>?>>>?>?>=>>?>==>>???6<>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:7JFJFFJJJJJJFFAJJJJJFJJJ7JJF99=>@8AC??B@A@A@@@A>:?AA>AA=@@?@??@@@??>@?@>>@?>?>@???@@?@??=?3@?@@@???@??@>@=>>?>?=?>>@?>==???>?>?>?>>>;?>?>>??=>?>?>?><??>>>>?>=>>=?==8>>>=?>=>=?>=>?=>=?=;>6=8>>=>?@>>.=.;=>>??>-=?9;>=?/???@>@???@@>>@???@>><>0?>@@<@>/@2?@??>288>;'6>;@A0?@AA?@<)(=<0?@>:==;6# MC:Z:151M MD:Z:123T27 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJJJJJFJAJJJJJJJJJJJJJJJJJJ2?=?><2@<1?:?@@?A4?@?A?@?@?@>@??>>>?=>>=?=>>>@=>???>>>@>?>???>>>??=8?=>@>>?>?>@<<>?=>@?=?>?=>=?3?=>==@>===?>><>>>=?>=>>?=7<=>>==?=>?@>>:> MC:Z:127M24S MD:Z:62C80C7 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:2 MQ:i:60 OQ:Z:AJJJJFF-FFFFA7FA-JJJJJJJ7JJJJFJFFJJJJJJJFJJJJJ<@?A=???:@?>??@???>@>=???>>>>@>>???>>>?>>@>????>?>>?=??@???@>?@?=??@><>?9@=;==?<<><<=<>8?>>?==>>?===<>>==?=>:>9==?>69< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:=@=>0>>7;,3=8?=&/?>=7=>>:=?<=.=;====>;=:>?:=>>@>>)>??>?@>?>+??:>>?>>????=?>?=?>=>??;??@>*=42?)=<97@7?@>>+@@@@@>?>@=@+3@@A@@??=67?B;>43>=@@>?>@>=>==9>?>=??>>=?>>=?>?>@=??>??>>>>??><=???8?@?????@??>@=??@?>?@??>?:?;??>>=@=??@??@?>@?@@@=<@@?=?4A@?;$889+4=:&85<@?A?A@@6;$6@1<,>??=?:=>=.>; MC:Z:151M MD:Z:58C61A18C11 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJFJJFFJJJAJJJJJFJJJJFJFJJJJJJJJJJJAFAJJJJFJFJJJJJJJJJJJJJFAJJJFJ7JJJF)A7<-AAA-F7FJJJFJJJ*+<80B@A??<>1>20/@;017=?;==?:@@>??@?A>?5.30??>.@>@=?+7)?=?@<=?0?=>;7>;?;<8@?>>:;9@>>5/<0>,.;0=?==4:==>98>>@=>=<@=@>29<. MC:Z:151M MD:Z:15T41C80C12 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:3 MQ:i:60 OQ:Z:###################FAA--77-JJJF<B@AA@:@BA@AA@A@A?A@A?A@A@?@@@A@?@?@A???A?@A@A?@@?@A?@@A?@@@@??A@?8??@???>??@??@@>?@?=???=>>>????>>@?>>>??????@?@?>>??=@==??==>>?>>8=>==>?????<== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:AJJJFF:?@@>@?=?=???>?=>>?>?>>>?>>??@@???@??@@@???@?@>?@@;=?@??@@;>?@?@;=?>??@?@@@>?@>>>>@>?>@?@?@??@A>==@A=/<??AA@A?@<=??A@A@?A?@@;1A?ABBA@@?<:;@ MC:Z:151M MD:Z:50C80C19 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJFJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ>9>>:=?>=>?=><>=>>>===?=====?>==>>=?>>>=>?>?>?>?;>>??>???@>?=?;?@>>?>>:?>???>>>????@>>??>>>@@?>>7?????@A@@@?@>??3@?@>A@?@??@AAABB?@@?3=;?A MC:Z:151M MD:Z:49C80C20 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJAJFJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJFJJJJJJFJJJJJFJJJJJJFJJJFJJJJJJJJJJFJAJ7JFJJJJJJJJJFAJF7AJJFFJJJJJAJJJFJJJJJ-AAAJ UQ:i:78 AS:i:141 +HT2V5CCXX160630:3:1224:13687:70627 99 7 4490805 60 151M = 4491135 481 TCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATA ?>>9>>>=?>=>?=><>=>>>===?====>?===>>=?>>>=>?>?>???>>>??>???@>?=???@>>?>??@?>>>?>???>?>??@?@>>??>>>@???>??????@A@@@?@A???A?@@A@?@??1AA@AB?@@??>::A MC:Z:151M MD:Z:49C80C20 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJFJJJJJJJJJJFJJJFJJJJJ-FJAAJJJJJJJJJJ UQ:i:78 AS:i:141 +HT27VCCXX160630:3:2217:30239:57706 147 7 4490806 60 151M = 4490435 -522 CCACCGTGCCTGGCCGCAAGGAAGATGTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAA <94<9?7AA.9=A<6%<1A@@=8&><<<=?=(@?@B@?A:*4(:;-(?=???>=@??=@@=@@>=>??>@?A>?'@??A>?A?A???@><4=?>:?37=;?>>?>?>?>>??@>>>>;?=?>>3==9=>=?<8@>?>>>>>=?@?,?< MC:Z:151M MD:Z:15T10T124 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:A7)JJJ@>>?>??@???A>=??>>?6>?>?>?>?>>@?>=7<;@>??@?@?>??@>@==>>==>=?>>8=>==>>?>>>====>><>>=<=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:JJFAAFF??@?>?@????>@>>?>??@???@>?@?>@>?>?>??@??>>@?>>>??@??@@?@>=>??=?==?>==?>?>>9=>==>??>>?====>?=?@>>?@>==>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:JJJF:@B<9AB@A@A@@???@@@>@@@@@@A??@@@??@5A@????>>>??????@?@?@>?@??@@?@?@>?@??@?@>????@?;??@????@??>?@??@>??>?=>>=<>>><=>>>8=>>>>>?>>>>>>>>>>??????=<<@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AA<>A?@?A@@?>9@=>???@>>>@>?A@A?@?@>>?;<9??>?9=,>>,@??@?;;@?>??@>>>??6??>>@?>=*??@??>?=>??=?==?>;=>>?>>6=>==>??>>?====>?=>@>?@@>:=@-A9*;?>/?@;?6=81/*4-@&=:2).<).)/)0>6.-@=/3().2((7/>:5<><+??:>?.,7+>?:>@...>05>>93< MC:Z:151M MD:Z:11G5T7A4A9C6T1T3T40C17T8C15T13 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:12 MQ:i:60 OQ:Z:###################################################################AF-J<-7FA-FJAF7A77--7-J-FA<--<------F7--JF-7---7--<-FA7FFF-FJ7FF--<-FF>:==@>/>@>>>?=>>:>>=;=>>>8==???>>>>>>?>>==>?>>>>==>?>=;>=?>=>;=??>??@>>=8>?>@>,=;;<:=,>@;>>>??@,<5@>@,;?=>??>@?>>?@>@>??>???A)/5?>????@@;A>?3@A@>?><=> MC:Z:151M MD:Z:38C80C31 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:AAAFFJF-FFJFFJJJFFJJJAFFJJ?-A>,=?B8?<:ABA@@@A@@@>B?AA?A?@?@>A?@@A?@@A@?@A@@@@?A?@@?@@A?@A@?><@>@;?>?>?>>??>>@?>=;>??=??@>@>>@?=>??@??@>>==>@?>>?==-=>?=>?=::?==???;;= MC:Z:151M MD:Z:38C80C31 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:2 MQ:i:60 OQ:Z:####F<-A7-<=?>>>>>>====>>===?>>;>=>>>?>?>>>?<>>?>=??>>>>>@???>>?@??>@??>?>@?@??=?=>??>;@?>>>@?@@>@@@@@??@A@A@@@???A@A@?A>@+>28<@=9?:??@@:@@??@AA=ABB--@9<99@ MC:Z:151M MD:Z:32C80C37 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFAFAJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJFJ-F-AAJAAJAJJFJAJJJJJJJAJJJ--JJJJJJ UQ:i:78 AS:i:141 +HT2V5CCXX160630:4:2102:25236:30228 147 7 4490823 60 151M = 4490421 -553 AAGGAAGATTTTAAAAATAAAAGTTGTGGTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCGCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGA #################B@?:?>?3&A=&@:+A???2)1><8@A@>>;;9@?;6??=A@>>A??A6?@@$&?>>@?:>:??@>@>97>>03.><.8>?>>>@@>>?==<=>?>>?;99?==>=?=>>95)92;- MC:Z:151M MD:Z:25A2T47T74 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:3 MQ:i:60 OQ:Z:#################JA<77AA-)AA)A<-JFA<---<77FFAAA7<7AJ77FFAJJAAJJFFFFFFAF7JFF--FJJFFAJAAJFJJJFJFJJFJJFJJA7FF77-AA-FJJJJJJFJJJJJAJJJFJFAA7JJJJAAJFJF7-7-A- UQ:i:28 AS:i:136 +HT3GGCCXX160630:7:1223:17848:46191 1123 7 4490827 60 151M = 4491013 337 AAGATTTTACAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGCAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTC ?=4=A>???*>=>>==:=@>>9>@>>9@>>?>>??>>>?>=>?9@>=?>>?@???@>?-':=;@??>??@(>?>@?>>>??@:>@@>=?>??@?@???>>>4:@@1@@@?>1=;+19??;?>:9>>;?A@@@@AB=@A@>>>@??>>>?>>>>>=?>>>=>?=>=>>>===>>>>=>?=?>>>>?==@???@>=>?>>??>>??>>??@>???>>>@>??>??>????@???>?@<:>@>????>?@?@A@@@A@@@@@A@@A@@@???@A@@@@;?A=??;9?>=>=>>===>><>>>>=>=?>==>>>==>==>>>?=?=>>>?==?>>??<>=>==?=>===>???@>=??>>>@>?=>@?>?==>????>??>>>@>?>>9>>>>???>?@????@@?@@@?@@?=@A@??@:?@AA@??A><;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJAJJJJJJJJJJJFFJJJJFJF UQ:i:0 AS:i:151 +HT27VCCXX160630:8:1206:14986:14476 147 7 4490834 60 151M = 4490497 -488 TAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCACATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTT ;<=;=@@@@@B7>;9;0??A<@??@@;??@?@;>??>>>@>>@>@;>>?>@>?>>@?>?1?>?>?=?>?9/?:@=>=>6=>>@=?>>>=====>?=>>====>><>>==>>==>?>=;>9=>?>=>=?==>?=<9;< MC:Z:151M MD:Z:20C52C27C49 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:3 MQ:i:60 OQ:Z:FFAJJJJJJJJAFF7A7JJJFJJJJJFJJJFJJJJJJFAFJJFJJF7JJJAJJJJJJJJFJJJJJJJJJJJFF-JJJJJFJJFA-JFJJJJJAAJJJJJJJJJJJJAJJJFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFFFFAA UQ:i:90 AS:i:136 +HT27VCCXX160630:1:2213:8065:50797 163 7 4490839 60 151M = 4491113 425 ATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGA <=:==>?>=>>>>=>?=>==>>>=>>==>=>>===?><><=>?=>>>==@>>?>@=>>??@??==@>>>>>?>>>@@>@>>??@>?>??==>?>?*?@>>>?07A?@@>???@@??6??@=<98: MC:Z:151M MD:Z:15C80C54 PG:Z:MarkDuplicates.1M RG:Z:HT27V.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFFJJJJJJJFJJJJJJJJJJ-FFJJJJ-AJJFJJJJJJJJJAJJFAJFJJJJJJJJJJJJJJFJJJJJJJJJJJJA UQ:i:74 AS:i:141 +HT2V5CCXX160630:3:2216:8907:10521 147 7 4490840 60 151M = 4490730 -261 AAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGAC #9:;?>=:BB6<2'42>@BA=@@:><>2;>?===?997A@>>>1@<;@@@?@?>@?@=6;;571<;>@?>9>?>>?@>??@>>,9?4>?>>>??=:=>?==>8=>>?<>:>8=>>=?>=:@><;== MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:#FAFFA<@8@>3?=@AAA@?@@@????@AA+>@AA@A?@@@@A=@@=@>?@?@@?@>???<>?@??@=???=?9??@??@>???@>?>>????@>???:>??>>>>>??>>>>>==>?>==>9=>?>>>>?>>?>>?>>>?=<=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:AJJFFAJF-FFJJJJJJJJJJJJJJFF-FFFJJJJJFJJJ7JJFJJJJJFJJJJJJJAAJFJJFFJJJAJ>>=?==>2>>8>>==:+:?=?<2=>?0<1:=>7:9.;;:;>5<=><>@*<<:??7>%-9704@?/:.-9>58:>?>>.;?>.6=9>0-:/:;??@>=?./.:<9>?+.6*:A@>@BBB@AABA@?@@A??@A@?@A@@@@?A>@@?@@A@@AA>?@?>@?@>?>??@??>>@?>>>??@>?@@?@?>>?@>@>>@?>>@?@??@>?>>?@@???====>?=>?==>?==>??==>9=>??>>=?>=>>>@>??@>>>=>? MC:Z:149M2S MD:Z:13C80C56 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:2 MQ:i:60 OQ:Z:JFAJJJJFJJJJJJAJJJJJAJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:82 AS:i:141 +HT2V5CCXX160630:6:1223:21227:31019 1187 7 4490842 60 151M = 4491082 391 AAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACAT <<<<>:?>>>=>?=>=>>>>==>>=>>>?=?=?>??=>@???8<>???>???>?>??@?@>>??>(=;???>::@5?>?@???>??=>>@::???>@???A@@@?7BA@<>A0:4<<### MC:Z:151M MD:Z:12C80C57 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFAJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJ>?>>>=>?=>==>>>>=>>=>>>?=?=???@=>@???@?>???>???>>>??@?@>>??>=8=???>@?=7?>?@=?@>@=>>6>>?@??>@??/A@@?@A@@@@9@AAA@?@@(7?;A@?@@@4=;8<< MC:Z:151M MD:Z:12C80C57 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJAJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJF2:=.@>>>=>?=>=>>>>=>>8=?>>?;/>7?=>?>?????><>;>.5??>?&>3:==7>?>=8(/.6/10;=+?>@@@?>?/;(<'1.5?9=?@@@@<@??A@@=>1?:1=?@@???@??=>>?>>>?>>>???>?>?>>?>>???>??=??>>??@>>?????@??@@>>>@?@??@@>@????@?@>?@?>>@?@??@>????@@??@????@A?@A@@@A??AAA??A;?AAA@@?A@?A@ABAAAB?=A>@>;>> MC:Z:151M MD:Z:9C80C60 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:2 MQ:i:60 OQ:Z:A=9>@?=???>==>>>>>>?=?>>>=;>=?>>?>>=>>>>=>>=>>>>;;?>?>)===?>?>=@?>;??>?>>>>@>>?>9>??<<@?????@??@?????:;>A@@??:<8?@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAFAFFJFJJJJJJJJJJJJJFJJJFFFJJJJJFJJJJJJJJJJJJJJJFFJJJF-FFJJJJJJJJJAJJJJJ5+)>1A6*11+=@1>>=&+/>=>??@;@;(@3/@<@39<8)@9->>=34+>???>?>?6>(=@?@>?977?;7<929=&>><=8?>:>>>>;:>>>==>9<;?>;81?==>>=>8<8;4:;=.?=<=>=?9;< MC:Z:151M MD:Z:4C119C26 PG:Z:MarkDuplicates.1E RG:Z:HT27V.8 NM:i:2 MQ:i:60 OQ:Z:A-AA7--F-JFJF<----FF-AA<---A@>>==>>>>>>?=?>?>>?>=?????@>?@??@?@>???<@?@????>>=@???>@??@???@@????@?;?A?@@>:?@@@@AA@@A@@@@@A@@A@@A@??@A@??@;?@B@@@@B>@=-2?723??@@A@A@>@A=1,;1*A@@AA>?2@@A@A<@@@?@?@.>@@>>>?9??>???@?=?@???9>?;;8@?>?=:>?>>?@@??=?>=?????@>>>?==???>=?9=??>>>=?>=?>>?>=>?==>>?????@?A>>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:###JFA--A7--?@A?@@A??@>>??A?>>@>A>?>=?>>=>??<>?@?>?>>??@>?>>??>?@>?>?9>>=>??@>?;>=>=>==>>==<>=>>?>==>8=>?>=>=?==>?=;===>===>>><==>=?=>=;:@< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:F7JJFJFJJJJJFJJFJJAFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJ;>>>==>=>>>>>=>=?>>69==?<>)6;4>==?:?==7>>>>>=4@>;>=3??=?*;?3>0>:<<<>>@>?>*;=?:?80;>%=>?(*<;*9@@?>@A@??@9=.?@8>??AA=A@A@B@@A??AB?@@A@@B@=A?A>??@?@>@??A?<@?@@@>>@+>A>?@@A?@??<@?@??>>??@3??>>>??@>@??17?>>???>>?9?>?>?=?>>>?>>>???>>>?>@>>>??A?@?@> MC:Z:151M MD:Z:77C73 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:FJJJJFFFFJFJJJJFJJJJJJJJJJJJJJJFJJJJJJJJJFFJJJJABA@@@?A?@8=@@A@@@A?@A@?A@A?@>???>?>>@?>>>??@???@?@?>?>?=@>>??=>>>@??@>>>>?>@>>>===>>>=>?>>?@==>>?==>8=>>?>>=>==>>=?===?==>>>>=<=?>?===?????>=@? MC:Z:151M MD:Z:76C74 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:1 MQ:i:60 OQ:Z:JJJJFJFJJJJJJJFJF<@???=?>?>>?>=??????=>@?=?>@>;?????@??@@===@???>:;?@???@@??>>@:=>@?@?>;>?@@?AA<>A;>=@?@@/@>@/@??AA@??A;?AA@???3>:?<>A@?AA@@@=B@A:AB;A;@0BAB35A==:7B@??@?A@B@@@>?@@;??A@???@??@?@A@A@?@@@?A?>?>>?;>@?>9>?>>??@@??>,>>??>??>>>?>>??@>=?8=??@??>?>>??>@>==?==>>>:===?>5===?>?>>>=?====?<;;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:#####FFFFFJJJJJFAJJFFJJFFJJJF<>??>==>>=>;>=>=>>?>?==>>=>>@?>?>@???=>?@???>?<>=>?=???>=?>;>=?>??>?@>???>>?@?<>@9>???@??A<:=@?@@@@@??>8A@0=;:@?A?;@@??@B73=@0<>?=@???=/=>>@>?>>>@:07/=;;=:>?@=>?@@<8=>@=<:>>???:==???8;??@?;=@?<=?>0@?@>>AA?;?A7;(A@@??1??>@==9>/:*+>?>??>>>=>>>>?>?>?>>=>=7?>=>?>=???>@?>?>?@>>>@>?==8=>#+;?;>9??:@>=@??>@@????:?@A@@??@@?A?@@??@@??@?AA> MC:Z:151M MD:Z:57A93 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJFFJJJJJFJJJJJJJJJJJJ7FJAJAFFJJJJJJFJJJJJJJJJJFFJJJ#-AAJJA-FJ=5>;?@3,B=@??@A@@?A@<=A?<@B@?AAA@A@?AA@?A?A?@:????@;=??8???@>>@6'???8;7??=@?@??@@;=>0?@?>>?>?>:7?>@>=>?>@>?>>@>>>>?>>=4?=?>>@??@>=>???>?>=;>< MC:Z:151M MD:Z:74T76 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:FF<<:?@@A?@@@?>?????@????????9????>@?>>?@?>>?:>?@??>?@??@?>?>=>?>>??@?>>>>?@===>??=??>?==>>?===>>>?>>?>??>>>>???@>?>@>@? MC:Z:151M MD:Z:44C106 PG:Z:MarkDuplicates.16 RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:JJJJJJFJJJJJJJJFJJJFJJJJJJJJJJJJFFFAFJJJJJJJJJJJJJJJJJJJJJJJAJJJJAFJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:7:1101:11809:12560 147 7 4490891 60 151M = 4490610 -432 GAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGCCCTAAGCAGAAATGCCTTGCAAA ?76;;AAAAB@ABB@@@BAB=?AAABAABBBAB@A@@??A@A@@;?@@@AAA@AA@@@@AA@AA@@A=??AA@??@;?AAA??>@@?@???@>>??@@???@?@???@?@??@?@>>??@>>>@=>@?>????>>>?@?=?>@?>;<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:JJFF7JFFJJAJJJFJJJFJ<??@??=>>>===?>>>=?>>>==>?>>>=>?===?=>>=>=>===?>??@>>>>?@>>>=>??>>?@?>>>9>?@??>>@?>@?>??>>?>=?>@?>>>??@???@@@@>A?@>?@;@???@??AA?@@A@@@@AA@@B@A@@<:>? MC:Z:151M MD:Z:42C108 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFFJJJFJJJJJJJJJJFJJFJJJFFJJJJJJJJJJJJJFJJJJJJJFF@??:>?????@?@????????????>?@?>>?:>?@>?==@>>??>>>==>==>>>>===>>?===>>?>>>>?==>>?===>==?>>?>>?>>>>>>=?>?>?????<;8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:JJFFJJJJJJJJJJJJJJJJJJJJJJJJJFFFJJJJJJJJJJJJJJJJFJJJJJJJJJJAFAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:6:1117:27488:55508 163 7 4490901 60 151M = 4491056 306 AAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGCCCTAAGCAGAAATGCCTTGCAAATGGGTGGAGA <;:?=<<6>2@==?@=?:==>?>>==<&;=>=:<9==:=99>@>?>>>==?;>??>=;?8>72?=>>=3<>>>@?>><>>>&2;71=878=0>@3??A??3<7=??744307A&7@>??9@=/4@=>7743:>@4<<9=# MC:Z:151M MD:Z:34C116 PG:Z:MarkDuplicates.1K RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAAFFJF?>>@7:?>=>><>?>>>===?>?=;9>>4>??@???>>>>??>??>=?@???;@??6:??@5?:>@=2?0;@?>????=>????=@*;07=?*;9?@?A@=??A@>@@??A@=A2@A@?+>;??A>??=??>=>@>>9=:=>?>8:@?@>/88>>./;>>?>>=>';>=>>:>>?@92<15(/8-<.;/???03@A=.=9=:???####################################################### MC:Z:151M MD:Z:119A1A5T3A8 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:4 MQ:i:60 OQ:Z:AA6@=???=>?>:7@>@>?:>;8>@=>/=:??=;@:/8=;/=<=22>@=>2.:718;?7@):@?############################################################################### MC:Z:151M MD:Z:114A4A2T8A1T9T1C5 PG:Z:MarkDuplicates.Y RG:Z:HT3HV.7 NM:i:7 MQ:i:60 OQ:Z:AA>?@??@@?@=>?>==?>?>>?=>>>>??>>?>>>>>??>??>?@>>@@@>>@:>@@@??>@?>@??@???@>>??@????@?@>>?@?@??@?@>>??@>>>@??AA@AAAA@@@?AA?A@@@@=?AA??:?@@AAAA@BB@B@:<;=? MC:Z:151M MD:Z:21C129 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJFJJJJJJFJJJ7AFAJJJJJJJJFJJJJF< UQ:i:41 AS:i:146 +HT27VCCXX160630:3:1108:23287:26431 83 7 4490920 60 151M = 4490671 -400 TAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGCCCTAAGCAGAAATGCCTTGCAAATGGGTGGAGATCCAGGACGGGAACTGAGT 8=<<>@AA@@A@@@AA@?@>?AB?@@?@@@A@@@9=?@@??@@@???:?@@@???@??@@?@???@???@?@?>>??A??>?>@>>?>@>>>>A>?>?>>??>@??@>?>????>>???>>??>>>?>>@>?>>?@>>?9>>>>@@?>@9> MC:Z:151M MD:Z:15C135 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:AJJFJJJJJJJJJJJJJFJFJJJJJJJJJJJJFFFFJJJJJJJJJJJJJJJJJ.;9@@AAAA@:2A@>?=@@5=83@??@A9??@;?@A<@?>?36==*>??<3????=<>+1;?>:2:=?@?2=2@>>?>@>>>>>:?4?@?>@>?@9???>?=+>>=>=>?=>==>?=>>9==>=??>>?===>>?9@9><=>9< MC:Z:151M MD:Z:2C148 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:AA-JAJJFJJJFA-JJFFFFJ<<7)JJJJJAJJJJJJJFJFJF77AA-FJJF7JJJJAAF-7FJAF7AFJJJ-A-JJJJFJJJJJJFF>?>??@??>====>>=>>==>?>>>??>>>9>>??>==?>=@?>@???@???>@????@?@???@?@?>@>@<>>>@????>>@?>@?@@?>>?@?>@?@?@>>?A@?=@@<@@@@?AA@@?;@@=?>@A@A????@BA@<@@?>;?@ MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJ..;B@@A?2@@@;?@AA@??A>?@>@A?@@A??@>@@@@@A@@?>>@@?@=@?@?>@?@>>>?>>@@=@????>>?@?>@?@?>>:??>>>@>??>>=>?@=>>:>=>=>??>>9===>??>9==?@>:=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:#FFAABAAB@@@?AA?@A??@A??AAA??@;?@AA>/>A?????@>??@>>???????@?@>??@?@???>@>>?>@>>>?>>@@>@??@>>>?@?=@>@>>==>?===?=>?>>>=>?=>>9==>=>??>?=>>>>?@?:>>?A?>@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:7<1>@<=(<===><=>>==;?:*;>=>=>/>;34<=>?>=<>/?:/;:?7=><07/:?%177?>?@?:<*9??;>@**(7>4@?=;?=?9>??;75?@?<=?9@;?88-;+<@?83><),-6:<;83A@'&197>@BA@######### MC:Z:151M MD:Z:61A70A18 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:60 OQ:Z:AAA-F-JFFA-FJJJFFJJJJF>?;919@A9?0=/=@A@+A71;<7$>@@A?1:2:+@???A??@@@@>=>>?@>..>?@@@?>@>>?>@>?<97>?:>@????>>?@?>6'@?>>>?>>>>@>?@<=&=?@>?>8==>=>>?>?==>>>>=>5==>??>====;< MC:Z:151M MD:Z:96T16T37 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.6 NM:i:2 MQ:i:60 OQ:Z:###AFF<7-7FA7A-<-AFAF-J7-<<7)FJJFA)A77-AA?@??@??@>>>?==???==?9=???>>=?>=?>>?>?>?>=??@?>??@?@???@?@??@?@>>??@>>>@>>@@?@@@@????@@>@?@@@???@>>=@>?A@@@>AA?@@;??@0?@@@@8&?A@A0?5?=@B@ABAB8<,?=::@ MC:Z:40S111M MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJJJJJJJFFJJJJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJFJJJFJJJJJ-FAFFJ77FJJJ-F>?@??@??>>==>>>==>8=>?>>==?>=?>=>>==>=>>=?====>>??>>????>@??>>??>>>>?>>@@???????????>@>??@????>>:<>??;@??A?>@>:???@>@????>>@#??>9??@@@A@@?AB@B?@<>:9> MC:Z:151M MD:Z:126C24 PG:Z:MarkDuplicates.18 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJ7AJJJ7FJJJJJJJJJJAFJJJJJJJFJ#JJJJJJJJJFJFFFFJJJJFAJJJ UQ:i:2 AS:i:149 +HT27VCCXX160630:5:2206:7618:27275 163 7 4490953 60 151M = 4491177 375 ATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGCCCTAAGCAGAAATGCCTTGCAAATGGGTGGAGATCCAGGACGGGAACTGAGTTCACTACGGGAGCTGTAGACTTCCAAGGCTTCA ==>?8<=>8=>?>===?3=>>=>>==>>===>===>>>?2<=>=?=<>=@=>>>@>>>?6>@?>@??@>==???>@>??<>>??>>??>>@=?==>@;5?9?>>??@?<=2.0?@?@??8A<>@<:=>>==:8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:AAAAFJJJJJJ7JJJJJJJJJJJJ7JJJJJFJJJFJJJJFJJFJJJ- VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.10 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.11 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.12 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.13 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.14 VN:6bdf8d4fcdfd4e24b1bbb8ff20c87271864128b8 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HM3G2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HM3G2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.15 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTL2KCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTL2KCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.16 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTL2KCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTL2KCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.17 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.V +@PG ID:MarkDuplicates.18 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.U +@PG ID:MarkDuplicates.19 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.X +@PG ID:MarkDuplicates.1A VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.W +@PG ID:MarkDuplicates.1B VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.R +@PG ID:MarkDuplicates.1C VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Q +@PG ID:MarkDuplicates.1D VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.T +@PG ID:MarkDuplicates.1E VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.S +@PG ID:MarkDuplicates.1F VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.N +@PG ID:MarkDuplicates.1G VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.M +@PG ID:MarkDuplicates.1H VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.P +@PG ID:MarkDuplicates.1I VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.O +@PG ID:MarkDuplicates.1J VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.J +@PG ID:MarkDuplicates.1K VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.I +@PG ID:MarkDuplicates.1L VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.L +@PG ID:MarkDuplicates.1M VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.K +@PG ID:MarkDuplicates.1N VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.H +@PG ID:MarkDuplicates.1O VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates +@PG ID:MarkDuplicates.1P VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.16 +@PG ID:MarkDuplicates.1Q VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.14 +@PG ID:MarkDuplicates.1R VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.15 +@PG ID:MarkDuplicates.1S VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Z +@PG ID:MarkDuplicates.1T VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.12 +@PG ID:MarkDuplicates.1U VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.13 +@PG ID:MarkDuplicates.1V VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Y +@PG ID:MarkDuplicates.1W VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.10 +@PG ID:MarkDuplicates.1X VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492101/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492101/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492101/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492101/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492101/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HM3G2CCXX/C1-310_2016-03-08_2016-03-11/2/Pond-492101/HM3G2CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/5/Pond-492101/HTL2KCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HTL2KCCXX/C1-318_2016-04-12_2016-04-15/6/Pond-492101/HTL2KCCXX.6.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12891/v5/NA12891.duplicate_metrics COMMENT=[aggregation_version=5] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G94982.NA12891] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.11 +@PG ID:MarkDuplicates.H VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492101/HJYFJCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.I VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492101/HJYFJCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.J VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492101/HJYFJCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.K VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492101/HJYFJCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.L VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492101/HJYN2CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYN2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HJYN2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.M VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492101/HK35MCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.N VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492101/HK35MCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.O VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492101/HK35MCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.P VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492101/HK35MCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.7 +@PG ID:MarkDuplicates.Q VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492101/HK35MCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.8 +@PG ID:MarkDuplicates.R VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492101/HK35MCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.S VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492101/HK35MCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.9 +@PG ID:MarkDuplicates.T VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492101/HK35MCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.U VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492101/HK35NCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.A +@PG ID:MarkDuplicates.V VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492101/HK35NCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.W VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492101/HK3T5CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.X VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492101/HK3T5CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.Y VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492101/HK3T5CCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.D +@PG ID:MarkDuplicates.Z VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492101/HK3T5CCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.E +@PG ID:bwamem VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.1 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.2 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.3 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.4 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.5 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.6 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.7 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.8 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.9 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.A VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.B VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.C VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.D VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 8 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.E VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.F VN:0.7.7-r441 CL:/seq/software/picard/1.1062/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@CO aggregation_version=5 +HM3G2CCXX160308:2:2121:20618:61116 99 1 14804625 60 151M = 14804863 389 CTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA >A>>??>=>?>==<===<===<<===<=====<===>==<<==<>==>>>>>>===>=>>>=>>>=>?>===>=>>>>=>==>?>=>>>==>>=>?>=>>>=>>>=>>>=???==??>???>>???>???>???>?????@@>@@?==;;> MC:Z:151M MD:Z:145A5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKFFKKKFFKAKFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKFKKKKKKKKKKKKKKKKFFFKKKKKKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2121:20791:59868 1123 1 14804625 60 151M = 14804863 389 CTGCTTTCTAGAGAATTCAGGACAAGAAAAATCCCTAGGACTGAGATGGGAGGAGAGATGGATAGATAGATGGCTGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA ;A;>4:>=>?>==<=><<;==<<;:+3:<==71;;>>=-7:=5:=7=,,,(45<49+6.5===(4*7(;9/--'27:*05<4*(<:8;<::8+*.1<**<<:78<=>,>:2>>>?35;?:=?=;=?;),-4;5;>;5-**5;'+?>><;<9 MC:Z:151M MD:Z:50T12G9A71A5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z://A?@67?*@@7@??9./**=..2=>);:==?.1;6.810(<47.1(8.00>;?<>.%(;<6<=>5<<==8>2>=>><=>:=(>>0==:2=>><=:>><>>><=79><<=789=38<=<3=;<<><'7:?4:- MC:Z:151M MD:Z:0C5T29A114 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:3 MQ:i:60 OQ:Z:#########A7A,<,,FFF<??>>?>=>====<===<<===<=====<===>>==<>===7<<>>;>>=>-<=2<>'=<<.9=><9<>=>>>=07=;==>=;>>=>>==>?>=>>>>8>>8>>>;???>&4:=???<=>??????>???@>???@@@@@@@@18<:<< MC:Z:59S92M MD:Z:59A52A30A1A5 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFK7>6??>?????>???@??>=??>?>>6>>=>>===>=>>>=>>>==<>=>><=>>>>=>>=><>=>>>=>>>=>;>=>=;=>>>==>;<>=>====<====<===<==86===<==;<===<===>>>>=>?=>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A=>?>>>>>>>>>==>>=====>>>=>>====?>>>>>>>><===>=>>>>>>>>>>>>>>>>>>>;>><;><>?>>>>>>>>>=>?>=>>>>>>>=>??????=>>???7?=?????=???=8=?>./:=??:=<2=;/6:#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKFKKKKKKKKKKKKFKKFFKAFKKKKKKKKKKFKKKFKKKKKKKFKKKKKKKFKKKKK7AKFFFKKKKKAFKKA7FKF,7AAFKAF<7F<,?;>>>>(:>=<====<====1=;=='63:6<=<*:.=<9.=*0:0:2.=<==>>=.=>=>>2=.79>.=<<88>:/:<088<>.>>9/:20/:=>>>>06;<<>?=>;/8>=/?:*0370??=>>?;>=?################## MC:Z:45S106M MD:Z:28A89A15^AAGA17 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:6 MQ:i:60 OQ:Z:AFFFAKKKK,>9?<@2=>.1A*@@@=?<>558?:?94=>?;.*957:8>===:;)<>???>=7==;8>=;<>>=>>=>?>=>>>=<)7=>?=9:>7=>>7=>=3=>=;=>>><>>>><>>;<===<==5<===<==8<8=<<===<==8>?@8<= MC:Z:151M MD:Z:137A13 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:@>>=?>==>>><=====<===>==<<==<=<====<==<=<=<=>==>>>=>?>=>>>=>>>><>><=?>=>>>=>?>=>>>=>>>=>>>=>>>==>>=>=>>=>??>?>?>???>???>???>???>???>?@@=;## MC:Z:151M MD:Z:131A19 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKFKKKKKKKKKKKKKKKKKKKFKKFFKKF,>=?>?>>>>?>>>>>>>>>???>>>?>>?>>>>>>>><9=?>>>>>>>>>>>?>>>>>>>>>=>>>>??>7=>->=:<>??8<=><;?>>>?>>;=<<>@*<>>?@??=?<>@8;;@<.?@=?)((.?;?@@>@@@;>>/89#### MC:Z:151M MD:Z:124A5A17T2 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAFKKKKKFKKKKKFKKKKKFKKKKFKKKKKKK7FK,FFFAFKK7AFKAAKKKFKKFAFFAFK7AFFKKKKFKAFKA<?======<)1<>==<<==<=<=======<>;>=>;4<>>>=<>>=9<>>><>>=>?>=-5=;.;:;=<><>>>=>>>1>>>7=:?>???>??1<:???>???>>??;>?<>9@;>8@?<9=@9@@@?=@@5:A@@97?=9;;> MC:Z:151M MD:Z:13C111A25 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKK,>???>==<===>==<<>=<><==>>===>>=>=>>>=>>>=>?>=>>>=>>>>>>>=>?>=>>>=>>>=>?>>>??>???>???????>???>????>>??>@??>???>+A?@=1;>A06>;76> MC:Z:151M MD:Z:112A9A17T10 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKFFFKAFKKFKKKKKKK,AFF;??>:=;=====<:====;<=<<7*)01<6:==<%<:*<2=:<=:)072<<;=<;;;><=>>9;=<=>?=<<:====*6<=<<289<=>><>8/6=>>>0;>>=/*5><>:?=*:0*;<=9<>>??;>@??@??<<0++>=@?<=-;# MC:Z:22S129M MD:Z:37A48A32A31 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAF)-.*:=8997.=>-6::?=?=6.?=9<@?>?89<@>??@??>????@<=>???=>?8=:?>>>?>>>?>>>?>>;?>>>?>>>?>>>?>>>?<>:>>>>>>>>?>???==< MC:Z:151M MD:Z:12C9T128 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:####################A7,FA<=?>>==<:=;<=<====<==<=<=<===<=>><=?>=>>>=>>>><>>9=?>=>>>=>>>;=>>>=;=>=<>>=>>>9>>><41<=>???>??=3:>?>>>?>???>???3>?@>???;<>@9/<-;1<<:9@@=##### MC:Z:151M MD:Z:116A13A20 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKFFAKKKKKKKAKKKKKKFKKKKKKKFFKKKKKKKKKKKFKKAFKKKKKKKKKKFAKKKKKKKFFFFFKKKKKKAKKKF<7FFKKKKKKKF7AFKKFFFKKKKFKKK7FFFKKKKAAAK<,<,<,<<<7==>?>>>=>===<==<=<=<===<><====>=>>><>>>><<<=>?>>>>>=4<=>=?>=>>>=>>>=>>>=>>>=>>>=>>>>=>>>=>>>=>>>=>>?>???>???>???>???>???>???>:;:>7;:????@<9-=:;? MC:Z:151M MD:Z:114A36 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKFKKKKKKKKKKKKFKKFFKKKKKKKKKKFFFKKKKFFKKK7FFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKF6%96)>=7:;)(7-19+7>=6-19+:=8+-9><>>;:<9,+?<>>89:?<=:>8>:>>>=?>>:==>=:?>>:?>>>?>>>?>>>?=>>8=9>?>==?===>===>=======>>>>?>>>>>@??<8+9A?@@>@=8:?@8@2=*1=?1>>>8?>>)=>?)9<70<==8?=>?<>=9?<:&=1>=7=>=8=>><:>>>=><)9;>>>9>>;=>>>=>>>=>>>=>>;=>>=>>>>====<==7<<#;2&==<====<==<=>=??====/?=:/-0<99=4/.<>?<<>??@@;;<=???<>>@=??@??==:?>>>?>>=?>>>?>>>?>>>?;>>?>>>?>>>?>>>?>>>>>>>>>>>?>>>?>?>=?>>=;= MC:Z:151M MD:Z:0T10T139 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:############A<?>>=>=>>=====<=<=<===<===<=>=<===<======>==?>=>>>=>>>:=?>=>>=<>=>=>>><>=>=>>>=>>>>=>=>=>>>=>>>=>>>=>>>==>==???=??>==>>>?????=??>?>98(/7@@>>>;;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKFFKFKKKKKFKAFKKKKKKKKKKKFKFKKKKKKKKKKKKKKKFFKKFKKKFKKFFFFFKKKKKAFAFFAFKFFA<7,,AFFAFAFK< UQ:i:0 AS:i:151 +HK35NCCXX160204:2:2209:29579:59235 147 1 14804663 60 151M = 14804553 -261 GGCTGAGATGGGTGGGGAGGTGGATGGATAGATGGATGGGTGGATAGATGGATGGGTAGAAGGGAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATA ############################################################=(8'=1=+-<=+>8(,-<2++>;6+-<=:>>>9?1>:>(9+-('5?>>>?8=:-(5>;418?>>>>>>>><>==>>>?>?>>>>??=>.=< MC:Z:151M MD:Z:1A13A3A35A7A43A43 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:6 MQ:i:60 OQ:Z:############################################################A,A,A7F,,FF,FA,,,F7,,F@>??>>>=>=><===<===<=>=<===<=======<=>=<====>=>=>?>=>>>=>>>=>>>=>>>=>>>=>>>>=>>>=>>>=>>>=>>>:>>>=>>=>>>>=>>>=???>????=>?>>???>??>?=?=???>@@@??A@>>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKFFKKFFKKKKKKFFFFKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2106:16315:24515 163 1 14804672 60 151M = 14804871 350 GGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGG =;<>>>====:>==<===<=>=<====>==>>=>=>?>=>>>;>>><->;=>>><=;>=>>><>>>=>>>=><>>=>>>=>>>=>??>?;?>>??;>??>>?<??=9/9<@.:>>?@@9.-/--**A/:=:/-;??@5><:: MC:Z:151M MD:Z:98A52 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF,FFKKKKFAFKKKKKFKKKKKKKKKAKKKKKKKKKKKKKKKKFKKFKK?;?>?=>>>=>==<=>=<===<=======<=>=<===<===<=?><>>>=>>>=>>>=>>>=>>>=>>>>=>=>=>><<>>>=>>>=>>>=>>=>>>>=>>>=>>>=>><>8>?>=>5<=>=>?@?@???>???>?>>?@@=?@@?<8?<><===<=>=<===<=======<=>=<==>;>>>=>?>=>>><<>==<>>=>>>=>>>=><>>=>>>=>><=>>>=>>>=>>><:>>>??=:???6=?>=??>?/-)4.==?>?><.(.(/--9@>@?82<5=?@==@@?@><9:= MC:Z:151M MD:Z:91A59 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFFKFKFKKKKKKKKKKKKFKKKKKKKKKAFKKKKKKKKKKKFFKKKKKFAKKK=>??>>>>==<<==7;59======<=;=<===<===<=>=<==5<==>:<4=)2;==>><=6<<>=>>53<==:=>>=699<>>5=<>=>>2<=>><=:><:=>>>=>>=/-<>>?=>???>?=?>3?-*<569==??>>>>=>?=<===<=======<=>=<===<===<=>=<==><=<>=>>><>>;=>>>=<>>>=>>>=>>>=>>>=>>>=>>>=>>==>>>=>>>=>>>=>>>>>>>>??5<>??>?@?@???>???>);?>????@@@>@@?==;## MC:Z:151M MD:Z:131T19 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AA>>><;?7;5=>>>>>>>?>>;?==>>>>>==>>??>>?>==>==>?>=>>>>>????=;< MC:Z:151M MD:Z:6T7T2A4T6A15A31A68 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:7 MQ:i:60 OQ:Z:###################################AAF7A7<,AAAA<7A,FAA,7,,,,,AA,?=>?>>>7>>?>>>>>>>>>>??=??>>>?>>>??>>??>>?>?=>??8>>=>>?9>>:5=><=>>??=>>>>>>?>>.==>??>>9?>>698(.=8><9<,69=?6>>:6,==::>.?@5=.65.7:>@<78<.??9-;>8/<8## MC:Z:151M MD:Z:72A76T1 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFFKKAFFKFFKKKKKKKKKKFKKKFFKKKAKKFKKKKKKKKKFKFKKKAFFFKKKAKF<<=>>?>>>??>>>>>>>>>>??>>?==>?>>>?>>>?>>>?>>>>>?>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>>?>>=>>><>???@???>?@?????????@@??@???@???@???A@@@A@?@A@@@?@@?>;:8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKFKKKKKFFKKKFAKF UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1204:6066:67340 147 1 14804699 60 33S118M = 14804209 -608 GGAGAGGGGTGGGGGGAGGGATGGGTAGGTGGGTGGGTGGGTAGATGGATGGATAGGAGGAAGGAAGGAAGGAAGGAAAAGAGGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAA #######################################################81>95.089.0(99<81.092;6.:8/$3=<&>=6<<=.>>=;<>=>>>=;>>=;>><-0>=>>>><===:8======<;=;====;<=><=>=<= MC:Z:151M MD:Z:7A15A25A3A17A46 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:5 MQ:i:60 OQ:Z:#######################################################A7AA<,,AA,,,A<1.<4:/1=1.0+9-/10.<<<:/8=.<8=:><><><>>>8>;0<>=>>>====>>>?>>>>>=>>>>>===>>>>>>??<<<; MC:Z:151M MD:Z:7T11T50A58 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:3 MQ:i:60 OQ:Z:##################################################A<,7A<<7A<,177>760=8=/>;>>?>=:>>=9><8=;>=>><<<<;9.<7:=>>=>>;>=<>=>?>;>>>=>>>=>?>=>>>====<===<===<==<====<==<=====?>?=:= MC:Z:151M MD:Z:1T11T3T133 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:###############################A,77A/<=====<=>=7:==<8;5<0;;797;<<:>9>>&2=>>=9>>>5>>>8<<>=>>>=>>=;<;:<>>>0<>>4=>,<.57):=;>2;4*.(70==?=.-9>7@?>3?,*):,)),,*1@?<3;=<#################### MC:Z:151M MD:Z:40A33A76 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AA,>=>>><=?=<>==<===<=======>===>====<==>=>>>=>>>=>>>=>>>=>>=>>>>=>>>=>>>=>>>>/>=>>>>>=>>=>?>?>>>=>>>=>>?>?<>????>???>???>??>@>@;@?@@<@@@@@?@0?6;6> MC:Z:2S149M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:<<=<===<===;===;<;<<====>>>;<<>>=>>=<>>><>>><>>>=<9><>><9>>>=;<53>=<504<<.:;<39;==8/;/,>><<<>=7=:;??>???>???>???>9?9<>@;+/>55=>04:8;8 MC:Z:151M MD:Z:62A88 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFA,FKKF,AAKKKKKKKKKKFKKFFFAFKKKKKKKKAFFKKKKKFFKKKFKKKFKKKKFAKFKKFAKKKKFF77KFA7,7AF,AAA7AAKFA,F,,FKAAAKAAAAAKKFKKKKKKKFFKKK725=6:,@=:,>9><8=>4@<=;?894?=????=>>?<=<>=8>>4>>>>>>>>>??>>?>>>?>>>?>>>?<>>?>>>?>>>>>>>>?>>>>>>:>>>?>??=<=< MC:Z:151M MD:Z:2T3T6A24A18A93 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:5 MQ:i:60 OQ:Z:#######################################A<<,A<77<><>?>.8=7><8=<;=8=>9=9=>?><>?<>>?<>=?>=-(4>>?:6>9/<>=8>>?>=-5>>6907>>>>>?=<<,<,>>>=>>>.<>??>?>?=@???@?.-=8->@=<:>?:;?:8??A@@'<;@@?########## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:?>>>?>=>>>====<===<====<===7<==<===<===<====>=<<>>>=>>>=>>>=>>>>>>=<7>>>=>>=>?>?>>>=>>>=>?>=>>>=>>>=>>>=>>>=>?>????>??>>?????>??@>?>??>??@?@@>@@?=;0>===>>>>>=>>===>>>==>=>=>==>>>>>>>>>===>9>>>>>>>>>>>>>>>>>>>>>>>:=<>>>>>>=?=?>>>>>>>>>>>>>>>>>>>????????????>????;??????;????@8????=?@@@@@>>.:??>3<9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKK>>??>=<===<===<=>=======>==<>>>=>>>=>>>=>>=>>>>=>>>=>>=<>>>>7><0.:=>>>=9.9/.<>=>.>=0.;????????>????>???>??0@:@??@@?/?:>?@@;@/07'2>AA@@A@A############ MC:Z:151M MD:Z:149T1 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAFKKK7FF,,AFKFKF7,7,,AFFK,FF,,@>?@@?299A1:<@:)??=>???>??=>???>???>???>??;/;>;=<%)>:=>=>?>?>::9>>;9>;<<,>7=<>69;179=<0,>=9/=<&4+;0.;==<;<==:<<8<15=<5)9=)=7<2;/3?=?:>= MC:Z:151M MD:Z:43A21T22A14G6G1A38 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:FAA7>:97:8<5@;>;;98;;>):6>8,;=9>;=)=:?9=5@58688?@<9>>>?>;<>>>?>>>>>>>?<>>>>>>?>>>>>>>>>>>>?>>>>>?>>>>?>>>=>>>8>>>=>>=>?>>;>=:< MC:Z:151M MD:Z:99G51 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:#########A<>@?<<<>5-:2?>>8(&;;<5@<<>=(>>?<<5?<9>?<>8>>>>;<:=<=;>>><=>=<>?>>=9=>>8>7>>>>>>?>?>>=;< MC:Z:151M MD:Z:0A13A6A4A2A10A0A0A2A7A27A69 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:11 MQ:i:60 OQ:Z:###############################################################KKKKKFAAF7,<7KFFA,,A8?9>7?4(7?=>??=>???>>?>=>>>=>>><:=>=>><7=>>=>?><>>>=>>>=>?>=>>;==>>=>>3=>>>=>==>>>>=:=<====<=<==>=====<===<==<>=====<>?>>>@?=:?> MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:#######A77,7A?@96/.)6=?=??=???@?>?????>@@??@?>>>?>>>?>>>?>>;?82>;=>8;?>>>>>?>=>>?>>>>>>?>>;>>>>>??>>?@@<:=< MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:############################A,<7FAA,,:;3;.63,.=>::?>?@=:+?9>9????@??><<=+;<=5>?>>>>>>>>>>?>>>?>?>>>>>>>=>>?=>?;=:?>>><>>:?>>>=>>>?>>>>>:<;=>>>>>?=<:>?>==>>>?>>>=>>>>??>>???>>>?>?>;? 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MC:Z:151M MD:Z:36A114 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFKKKKKKKKFKKKKKKFKFKKKKKKKKKKKAKKKKKKKKKKKFKKKFFKKKKKFFKFAAFKKKKKKKKKKKKFFFKKKKFAAA->=>7><7+>=>=>>>=>>=><>>=>:=>2>>=>=>>?>>>>>=>>>=>=<>>=<==:=>=>=>====><>>?=?>>= MC:Z:151M MD:Z:10A11A0A3A1A1A3A2A4A6A100 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:10 MQ:i:60 OQ:Z:################################################A<,FKFA,AA,,7,F,KKF7KF7,FKA,AKAFFKA2>0(2@@>=8A9(?@'2@0)'.>6;?=((><':;.('><971>89;,0869'%>;=?>:>;>=::>;>9><;23>43=;8=>>:=<<;<:7>7;8<=9==7=<==>=:===<==+;==<===<==<=>=<=>===>><>>?=?>@> MC:Z:151M MD:Z:29A121 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:#FAA<7<,,7AFFA7AA,A<,7A,,,,F020*02)*0<9=0>4:027=8><<8*>=>67>=><:/(='>(;==>>=>8><>>>=>>9===*=>>>=>>=>>>><>>=>>>>=>=>=?>=<==<=6=<==<===<==<=>=<=>==<==<=>>=>>>???<=> MC:Z:151M MD:Z:5A1G16A17T108 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:########F,7AA,AAF,,7,,,,,,7AF,<92=>=9:0=:<;8=.><=>>>>=>>=>:;.><>=>>>=>7==>>>=>>>=>>>=>>>=>>=>>>>=>>=>>>>=>=>>?>====<===<==<===<==<=>=<=>==<==<===<===>>>>>??>>? MC:Z:151M MD:Z:10A9A130 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:###################AA@8;:=97==?;+>:???==<<,:9>@;??>:??@?>>?<>?@>>>?>>>>>>>>>..<>>;<>>>?>>>>>>?>>>>>>>>>?>>>??>>>>>>>>>==>>>?>>??==<< MC:Z:151M MD:Z:5A4G8A131 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:#######################################FF7AAF7=?>?>>>?<>>?>><0<>=?/77>1>>66'8==/8>?>>(-,=,(08,8'<,>,:,5'-('&:-(':8(,,>=-<;@??:8=/=?1,7?887988@@=>.=>6################################## MC:Z:7S144M MD:Z:4A13A29T13G1A3A9G48G17T5 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:9 MQ:i:60 OQ:Z:AAF,,FFFFKKKKKFKKKKFA7FFFK77AKK7F7KK7A(7FF7AFKKK,,,F,,77,A,A,F,A,<,,,,(<,,,77,,,FF,A>??980>*>???>???>>>8<8/8*2*?>=>>=:?><><>=>>>=:42==1>=>>>=>>>=>>>===<<>=>=>>=>>>>=>=>>?>>>>><=>=<==<===<==<=>=<=>==<==<===<====>>>=>????<=> MC:Z:151M MD:Z:17A2G14T3T111 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:?>=8:==;;5>>7=(?9<=???>??>==>>=>>>=>><9>>;=<==>=>>=>>9>;>>=>=>>?>>>>>=>>>=>>==>>=>=<=>=<=>=#<==<===<=======<=????;<= MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#####AA<7A77<,,<<,F7(.070.0(8.-<930'<'.<7/1>;,=<>4.><6-<<<<>61;-+=;;6-<><78/;->><9/7=====>==<>=<>=><<>;=>>:=7< SA:Z:9,28189608,-,17S8M1I29M1I34M61S,1,5; MC:Z:151M MD:Z:14A4A4A18A48 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:########################################################A7,AA,,,A7,,,A,,FA7,,F,,FA,7KF,AFKA,KF7,FFFAKA>>>=>=<>===<===7>======>>=>7>>>>>>>=>?>?>>>=>>>=>?>>>>>=>>>>>>>;8>>;<<<>><>>>>==??>??>?8,6>:??>???>??????>?>>?=@;@<=:><<@@@@??/9?=5=@??>>/>?/<6=)078< MC:Z:151M MD:Z:146T4 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFAFFKKKKKKKKK7FKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKAAKKAAFAKKFKFKKKKKKKKKKK7,AFFKKKKKKKFKFFKKKFAFAAAAA=>?>?>>=>>><===<===<=======<====<==<=>=>====>=>=>?>=>>>=>>>=>>>=>>>=>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=?@?>?@??=?>>>??>???????>?@??=-@?>=;:< MC:Z:151M MD:Z:7A143 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKFKKKKKKKKFKKKKKK<,AFFAKKKKKKF UQ:i:42 AS:i:146 +HK35MCCXX160204:8:2122:1479:33973 83 1 14804764 60 17S134M = 14804569 -329 GAAGAAAGAGAGGAAGGAGGAAGAAAAGAAGGAAGGAAGGGTGGGTGGGAGGAAATATGGATGGATAGAAGGAAGGAAGGAAAGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGAT #############################################<&87.8.++6+9;>=:64<87>8+?>>;?:=+.);+<.==>(===7=::8+8>?>=9>>?9<5>>:=7:9>=99>4=>>>>??>>>>>>>>>>>>>??=<>> MC:Z:114M37S MD:Z:9G17A8T28G68 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:4 MQ:i:60 OQ:Z:#############################################A(AA,A7,,7,A?,/)?7:)-.>7>,>><@9>-@=;?@???@?=?@?>>?????>@?>8;>>8(>>?>>>>>>?>>>>>>><=>>>=??>>>>>><>>>>===>>>>>>><>>>>?<;>>>>>8=<>< MC:Z:151M MD:Z:3A12A18T115 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:#################F<9>??@>>>?>>>?>>>?>>>>>>>>>>>?>>>?>?=>>>>>>>>??>>?>>>?>>>?>>>?>=>?>>>?>>>>>>>>?>>>>>?>>>>?>>>>>>?>???>>;>?@>?@@@?=????>?????9;>==?@???@<@@A>@;7:@?78<08 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:A>>>>=>=>>>=>>=====<:======<=?=>;>>=>>1==>>>=>>>=>>>=>><<<>=-76<;>>=6>>>>>=>>?>>>>>=>>>=>>->>5;88==?=??>?>=?????????7,==,)=?@@6;,==??>>>>=>>=<=======<====<==<=>=>===<===<=>>==>>=>=>=>>>=>>>=>>=>>=>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>?=??><>?>???????>?@????>???>9?@;<88@=>;;? MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKFFFKKKFKKKFKKKAFKKKKKKKKFKKKKKKKKKKFA7AK>>?>>>>>>>>>>>?>==>=>>>>>>=>>>??>=>==>?>>>?<>>?>>>?>>>>>>=>>>>>?65>>>?6>6>=><=<>>?>>96>><=@@??=>@???08<=8>??7?<>=?.?>>>?>=>>>>========<==<=>=>===<===<=>=<===<>>==>>=>>>>=>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>??>???????>?@??>=>????????>>;@?@=@@?>=:;? MC:Z:151M MD:Z:50G100 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAAKKKKKKKKKKKKKKFFKKKKKFKK UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:2220:16417:29226 99 1 14804777 60 151M = 14804877 251 GGAAGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGG ?<>???=>>>>===<====<==<=>=>===<===<=>><>==<>>=<===<>>>=>>=>>>>=>>=>>>><>=>>?>>>>>=>>>=>>=>>>=>>>>?>>>?>>:>>>???>???????>?@????>????????>?;@?@A@@>@>;;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFAFKKKKK UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:1224:26311:55227 99 1 14804780 60 151M = 14804984 355 AGGAAGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAG =>=???>>>>>===>=<==<=>=>===<===<=>><>>=====<====>>>>>>=>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>>>>=>?>=>?>>>>>=>>?>?????>>>?@>???>????????>>:?>@@@@>@>@@><9:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKK.>=>8<6>+?>>?>>>?8<=?>>>?>>>?>>>?>>>>=<>=?>>>>>?>9=>>======>========>?>=>??=>?=>>?? MC:Z:151M MD:Z:107 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:#############################################################A?>>>==>>====<==<=>>>==>==>==>?>=>>>=>>>=>>>=>>>=>>=>>>>=>>==>>>8>=>>?=>==>=>>>=??=???>?>9>@?:>@?????>??>>??@?>?8?@.::?@@@>:<@A==7;8? MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAKKKKKKKKFKKKKKKKKKKKKKKFAFKKFAKKKKKKKKKFKFKFKAFAA<7AF,<7AKKK<7AAKAAF(7A7,,=@7@6?@>>??<>???>??:=?>>=>>>=>=;<>><=>>>=<4=>>>>=>=>>?>>>5>=>>>=>>=>>>=>>=>?=<=;>=<==<>==<=======<=>====<====<===<=8=<====<>>=>>>?>?:@> MC:Z:151M MD:Z:6T144 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:##AA<<,KAF,AAKKFFF7F7KAFKKAFKAFKKKFFFFKKKKKKKKFFFKKFAKKKKF7KKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:11 AS:i:146 +HM3G2CCXX160308:2:2203:13088:33691 99 1 14804784 60 151M = 14805169 536 AGGGTGGATGGGAGGATATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGCTGGGTGGATGGCAGTTTT >?>?>?>=>>>>===<=>=>===3===<=>=<===<===<===<>>=<>><>>>>=>>==>>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>>=>>>=:=6::>?>>@):??>????>>??;<:?:??=??-;<?>>?>>>?>?>=>><>>>>39>>=>7<5;>>=>>:?>>=?>>>?>><>>>>>?>>>>>?>>???????;:=??????-=?@>=<@@<-9@<))-<:8@=%2>??;9>3:9### MC:Z:151M MD:Z:144T6 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:A?>>===<===<=>=<===<===<===<===<==<====<=>==>>><>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>>>=>>>>>>>>>?>>>>>?>??<>9?>????9??>????@@@<@@@@?=?;;=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKFKKFFKKKKFKKAAKKKKFKKKKKK7FKAFKKKFKK<@;??>@@;??=>@??>???>??;<91=>?<>=;??;9<>=7<>:>>=>>>=>>==>>=>>;>;>9>?>>=;>=>>>=>><>>>>=>?>=>;=<=>>=>>=<=8=<====<==<======<=====<>?>?<;= MC:Z:151M MD:Z:9T141 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FFFF?>>?@>?>>>====<=>=<===<===<<==<===<==<====<>><=>>><>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>><>>><=>>>>>>:>?>>>>=>>??????>>:?:>>?????;??????>?@@@@?>@?21;8;; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKFKAKKKKKKKKKKKKKKKKKKKAFFKKKKKAFKKKKKAAFKKKKKKK,,<=>=?@>>>=>>=<=>=<===<===<===<===<==<====<=====>>>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>=>>=>>>=>>>>>>>=>?>>>>=>>>>????>>:?>??>>>??>??????>????@??@>@@?==::? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKFFKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1219:25317:10433 99 1 14804800 60 151M = 14804836 187 TATATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCA >;>=??>=>>>==>=<===<===<===<===<==<====<==<<>>=>>=>>?=>=>>=>>>=>>=>>>=>>=>?>=>?>>>>>=>>>=>>>>>>>=>?>>>>=>>>>>>??>>:?>?>??;>?>????????????>?@?@?@??=<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK?@>@@?:>4@@??@;@??>????????>>??>>>?>>>>>>>?>>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>???;;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:###FAF??=<===<===<===<===<==<====):==:>>>>=<>>?=>=>>=>>>=>>=>>>=>><>?>==4:<<>=<>>>==>><>>>=>??><8=>???,095>7>?>=<=>@9=;*5;8@1.:655+<>=@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKK,%$3>6(9,6%$+75&#<-:'((/<(;,9>=>9############################################################################################## MC:Z:151M MD:Z:8A8G12G0A4A2T4A1A11A0T5T1T2A7G17 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:14 MQ:i:60 OQ:Z:AAF<,,,F,,=?>>9=>=>>>>>>;>>><>>=>>>=====>>>>>>>>>>?>=>=<>>>8>>>>>>>>><9??>>?6>>>>>=>:<;>>>=.=>><>>>>=>>>><,>><,:=?';&??2>)>96=8.:+))/.8:= MC:Z:4S147M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:<@<>>?>>=>>><===<===<==<====<=<<<=====<2=><==>==>>>=>>=>>>=>>==?>=>?>>>=>=>>==>>>>><>=>?<>>;==>>>=>>>==8<=>>>-=<<=?>????0;/>==8;?>@@??.?*9=:;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKFKKK7FKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKAKKKKKKAKKKKFKKAKFKKKAFFKKKFFKKKF,FAAFKFKKKK,<,AAAA@?@A@?@@>=9@6>@);/-??6);0>(<-?=>>??>>>)7'><5)>>=>>=>2>=>>><>>>=<>;=>>=>=<)>=<9>=>1>>=>>=>>>>>><9====<;=====<=<=========<=>>??;<= MC:Z:151M MD:Z:27T36T86 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:#A,A<7,<9;12>?=@????=>>:;<6>?>?>??@=9/<>:<9?>>>=>>>=-7==>?>>=8>=>>>=>>>>>>>=><>>:;<=8>>=>>>=<9>=>>>>=>>=>>>=>><=====<==<===<=<===<==<==<==<====>>>>>>?>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<7FA,,FFFAFAAKFKAAA<7AKKKKKKKF<,AFAAAKKFFKKFKF,7KAKKKKKKKKAKKKKKKKKKKKKKKKFKF<>??===<====<==<<=====<==><=<==<>>>=>>=>>>=>>=>?>=>?>>>>>=>>7=>>>>>>>=>?>>>>=>>>>>>>>==9>=??????>:=<>=???=????>>??>>8??>@=@@?@??:@@??=@?@=<=<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@9?@@@@<820?9???>?>???>?1*9?=>>?75@?>?@??>??>?>>=>>>>>>>=><>>><=><=>95):=>9>=>>>>=>>=>>>>>>=>>>>>=>><>>><=<=========<==<===<=====<=>??>=:= MC:Z:151M MD:Z:4G146 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:A>>=(>?>??=>2?>??>??<=?>:??>>=>>=>>>=>>>>>>>=>?>>>>=>>>>=>>>=>9><>>>>=>>=>>>>>>=>>>>>=>=>>==<=<=========<==<===<=====<===>=>>==>??=>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKKA,>>>>?>>>>>?>>>>?>>>>>>?>>>>>>>>??>>???>;>>>>>>>>>>>>?>>>??>??>??87=>>=>::??????,=<,<@=?@>>;@?@@?9>//*(9(:?@BA=*/:<<;<9 MC:Z:151M MD:Z:133T17 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKFKKKKKKKKKKKKFKKAAFFFFFFKKKKKKK,FFFKKKKKFA,AAKAFFFF7,AFK<<,AKKFAFK==:.89=94=>@??<@?>>?<>><<3=>9:,$84;;><;6<0;<9<8?>>>=<(9+(64=<<8=:7;9>>>>>>>>4*>>>=>=;>5(,>>>>16=9>9@?>;>< MC:Z:151M MD:Z:8A8C133 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:#########################################FAA7FFF<,AAA<7AFKKKAKKFFKFFFFF?@?A@9>=@@;@?@@@?@@@>??>???>??>?@?>?@??>??>???>???????=>?>>>>=>>>>=>;<=>9>=>>>>=>>=>>>>>>=>>>>>=>>>>>>=>=>>>>>>>==<==<===<=====<====<==<<==>@?><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKAAKAFAKKAAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1211:14346:10697 163 1 14804838 60 151M = 14805276 589 GATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGCATGAAAAATCACAGAGGCCCCTATTTTGG ;<=>??>>>=>=8>>>=><>>>>99>>>>>><9=>>->>>>>>;>>>>>>=>>9>>>>=<>;6<)<;<>>.2>=><:7=;;=:>*3?=73>9*...>9;0&>8@.<@@?=(7????@??;>':/>A;;??94@>AA0;>'$$$1A@?::## MC:Z:151M MD:Z:121A17T1A8T0 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKFKK7FKKKKAFFFKA7FKFFFFKFFKK,FKKFKKAFKFFKKKKK7FKKKKAF<7A,A??@?@??>=?@?>>?=>??8?9?>?=??>???????>??>>>>=>>>>=>>>==5;=>>;>=>>=>>>>>>=>>>>;<>>>>>>=>=>>>>>>>>><==<===<=====<====<==<<===>>?>>;8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<77FA7FA7,7KKFFAKFKKFFFKKKKFKFKKK@9/?=0+?;.:>>7?:=<>>.=>???>?@??>??=.8>=>>>>>>>=>?>>;><>>>>=>>>=;9>=>>>>=>>=>>>>>>:>>>>>=>>>>>>=>==========<==<===<=====<====<==<<===>==>>>=???==? MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:#FAAAKF7,FA,,?>>>>==>=>=>><>>>=>>>??>>??>>>>>=>>>=>>>>>>>=>?>>>>=>>>>>>>>=>9>=>>?=>>=>>?????=(:?=?>?>?@:=??>???????>????>@??@@>>=@@@<@@?@@???9A-?->A@@@@>9:8; MC:Z:151M MD:Z:87T63 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKFKKKKKKKF,AKFKKKFKKAFFKKKKKKKKKFKFKKKFKKFFAA=?>3/1(;<&(;85>>4.).;'>>77.<00.90(5/;01.7(9>><8:===>9>>>>>><=><:-7-:.8>>=>>?<>=/; MC:Z:134M4D17M MD:Z:7C35A18G43 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:3 MQ:i:60 OQ:Z:#####################################################AA<7A7K5?<>>=>878>>==7;;>518=<9;=;>>>>9=<:>====>9<:><7>>>9<,,0(.715<9,04-0;<-;)7;7.:->/;:7>><=><>::>???6=8)/:<:?5<<;?;>>)<'.:=9866=<@@?==?:;6-:9?>;;9<:## MC:Z:151M MD:Z:67G83 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AAAFFFKFFAAFKKKKAFAF<7);-.)@=8),7.),@??>=:<.4:??959????@?>>:=5>??>>>8);9=>>>8)>>)1=';/>?>>>>><5=9;=<>>>=<=<:956-1>>>>=<>>>?>>=,=>>=7>>>>>>=>>>?>>>???=;> MC:Z:151M MD:Z:74T50G25 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:2 MQ:i:60 OQ:Z:###FAKA,??>???>???????>?@>>=>=>>>>==><=09>=><>>=>>=>;<(>>;>>=>>=>>>=<*9>>>>=>>>=>>=>>=======<====<==:<===>=====<==<===<=>>?>>=>??=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:##KKKAKKAA7F7F,KKFA>?><==<=>=<=>=====<===<========>?>>>>=>>>><>>>==9>;=>>>>>>=>>>>>>>=><>>==>=>>>=>==>>>>>>??=??>???===???>?>??>???79@@A@@59@@?@>=:8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFFKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKKKKK=+68@=?8@><;2<@26<8@=>???>?6???<>=97:=:<>=?;=>>>>>>=><:>><>>9<>>=>=>>>>>>>>>==>=>>>=>=88>=>>=>=>>==>>=>=====<==<===<===:==<===;>>@?><>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<>97<;4)9-))=71:=>=51=>><>;898<<:;>>=;;01>:)/<>=6=====<==93=9<<47>>;<<==<6>3?>:<= MC:Z:151M MD:Z:7A18A11T1A22G87 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:5 MQ:i:60 OQ:Z:############################################FAA,A,A@=;>?@==>>=?:>>9=9+.*=:+<-)<,4;><7>>>>:>>>>>>?>>>>>>>;==;:>>?>>>>>>>=>>=>><=>>>>>>>><>>>?=;==>>>>>>>====9==>>>>>>>??>>=<>=>>???>;;> MC:Z:151M MD:Z:1A149 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:####F77,FKFAAAAKFAFFAKAFF;;?????>>???>>>>====>>>>>>?>>>?>>>>>>>?>>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>>>>>>>>>?>???????????@?@?=???=@??????????@???@@AA@@@@@@@AA@@?>=:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AA==>?>>?>=>?=====<===<=======<=>====<=======>=<9=<=>>>>8=3=>>>>>:0==>>==>=;>==>==>>>>>>>>=>>=>>>=>>>>>=>9>>=<>=:<>?@??????>?>??>>=??@??>>?@?@@@@@>==<:7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A@9'*@>/;5>>?>/>9?==?@=0;1>>>>8;21<*=9>==%%81*8::(7=<=:**6<%=<80>><==*<5>>>=2;><>>:=>>=>>><=:>8==*=7<<=8=8=:===<==<<;=<===)=24=;==>>?>::896=?; MD:Z:10T7T31T100 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 OQ:Z:######FFA,,AF7A?:;72>9-)3@937?@8@??=@@???>?@@?>9>?>??<;=5:03<>????>??;>=2>>>>=><=>><:==>>>>>>>>><>>=>>>=>>>>>=>>>>=>>==>>>?>;>==<<=<===<===>==<===<==>==<>?=>=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FAFA77<<,,,KA7????>>=>>>>=:>>>=>>>>>>>>>=>>>>>=>>>>>>9>>>>>>=>;>>>>>>>>>>>>>>>>>=>>??>???>????=??==8???????;>=??@>6>7>@>@>@@@><@@A@=?=@@=@B@@<7@AA=>;:98 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKFFKKFAAFKFKKKKA8@=???@???><<>9.?<@2?>>>=>=:9>=>>>>==>=>>>>>>5>>>>>=><9>>>=;:;;>7>>>>>=>>=>>>=====><=======<<===>=====<==<===<===>==<==>9==>=>=>>?>???>@> MC:Z:151M MD:Z:33A117 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:####A7A><,<;;=?;>>88-:??<><>>>??>>>>=?;>>>>>>>>>?>>>>>>>>>>>>>>>>>>>>>>>=>>>?>?>>>>>??>>>>=>>>>>=9>>>>??>>>=><>??>>>>??>>???>:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:#AA,,,KKKKKKKAFFA,AAFKKKK@A9=-/*=@=A@@@@>@A?@=@?<;.)8.?=?>8=?????????????=>?????<5?????????=>>=?>>>>>>>>>>>>>>>>>=>>>?>?>>=>>>?>>;>>>>>=>>>=>>>??>>>>=>>>?=>==>?>>>>??=<;- MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AF<,AFKF?>>>=>>=<=======<=>====<======>==<9=<=>>>>>>=>>>>>>:>>>>>==>=>>>=>==>>=>>>>>=>>=19==>>>>>=>=>>=>>>=>=>@???;????>???>???@?#?>??>??@??7@@>?@@@@>8;:: MC:Z:151M MD:Z:85A40G24 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AFKKKFFKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKK#KKKKKKKKKA?>?>>>>>>>>>>>>>?>>>?>>>>>>>?>;>;<>>9>-;=>>>><;>>>>>?>:>>7>>:>99>?>0>??8:<>?>?9<;>(?<.:;>?<>;7/,>;@@??@@?:@=?@@@@A@@9/?19A8--*+0?:??>.:;696 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFFKKKK,AFKKKKFAKKKKKKKAKKAKFFKF7FKF7FKKFFFAKKKKFA???>>>====<=======<=>====<========<<8========>=>>>>>>>;=>>>==>=<===>==>>>>>>>>=>>=>>>=>>>>>=>=>>=>>:=>=>;>???>???@??>>??>??@=@?7?>=@>@@?<;## MC:Z:151M MD:Z:149T1 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAFKKKKKKK>AA=AA<@@@>//@=@9@@==@@@?6@@@@@?????@??????????=>>?;;?>?????=?>?>?>>>>>>>>>>>><>=>>>>>>>>=>>>>>>>>>>>>=>>>====?>>>>>>>>=?>><>=>=>>>>>>??>=<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:##AA==>>>==><=>====<=>=====>==9>=>>>>>>>=>>>>>>>>>>>><;>=>>>=>==>>><>>>?=??>?>?>??>???>?>?@????????>?????@@A@@??@@?@A>@@?@@A@AA:A?AA@?@?;769 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKAKKKKKKKFAKKKKFAKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKFKKKA@@A>?A??@??>?@A><@9?>?9?>????>>>>?>????=>>>>>=>>>>>>=>=>>>>>>>>>=>>=>>>=>>>>>=>>>>=>>==>>>?>>>>>=>><===<==>>>><>=><==>==<==========>=<>>>>>=???>@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:KKKAKFFFFKAAAFKKKKFFFFF7KKKFKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1114:23399:48705 99 1 14804888 60 151M = 14805151 414 AAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGT >==>>?>>=>?>===<========<<8=<=======<=======>>=>>==>=>>>=><=>>>>>>>>=>><>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>?@??>>??>??@??>??@>??????=?>@@@???@?==;9=6,-@;<=;,98<.?=:>:==?????????????@?>>>;?<=<6;<;>=>>>948>>>>>>>>>>>>>>>8;<>>>?>?>>>>=>?>>>>>>>>>>>====>??>>>>>===>====>?>=====>>==<>>=>>>>>???;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:##AFFAF7,,F8;>@AAAAAAA@0@>@1?@@:?@A@<7@@6@@@;?=@@>:?@>????????????>?????????????????>>>>>>>=>>>?>>>>>>>>=><>=>>>?>>>>>>>>>>==<>=?>>>>>>=>>==>====>>>>>?<><:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAKKFAFFFAFKFA,KFA,FKFFFKFAA?=>0??>=>>>7>9=;>>>8;38;('48==8=<===>?;+;;==>><;=;=<9>&81<>6>9=7>>>?>>>?<-8==>>>5:=(-)<%/,>;;??;>???@;98>6>########################################### MC:Z:151M MD:Z:25T102T3T3A1T12 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:5 MQ:i:60 OQ:Z:AAFF,KKFFFKF>>>====>=>>><>9>=>>>=>==<=>>>>>=>>>>>=>>>>>>=>=>>>>>>>>>=>>=>>>=>>?>?????????=??????????>>?????????@?@?@@@@@@A@:?@@A@@@@@@?AAAA<=AA@AA>AA@>;86= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:>>>03,0->9=;5*5-+?.>>>>2><)>=:3,//02;<8-805,:)=<==;<,==7;9=-37==<><;><7>91>?;@> MC:Z:151M MD:Z:9T3A2T8T7T31T21A7G8C12A33 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:10 MQ:i:60 OQ:Z:##########################FKA<<,,(A7A7FKKFFFF?>@?>@>?>?????>8)97??????????==,=:+.7&>?;=;><<-<6>>>>??>79>>>>>04>>>=??>>>>=>==9<=>=6=>=>6>>>>?>>=<9 MC:Z:151M MD:Z:0A10A0A6A4T55G70 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:6 MQ:i:60 OQ:Z:###############################AA,,FAFF77FAA7FKFKKFKFKFKKFKFFA,<7KKKKKKKKKFAF,FA,,A,FKAFAFAA,AAFFKKKKKAAKAFFAKKKKK77KFKFKKKKFKFFFFAAFFF@>?A@A>9?@=?@;>?@@96>?=>?=????>?>???>??=???>?>=?????>>>=>>=>>>=>>>>>=>>>>=>;==>>>?>>>>>=>>=>>>=>>>;>>=>>>>>>?>=<==>=========<=====<=======>??=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KAKKKK>>>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?>>>>>>>>>>>>>>>>>>>>>>>>??>@>=?=???@@??????????@?????@@??????=@@??>@AA@@@@@@@>@?@@@=A@@@@:==8>>>9><>>>=>=;>=077;5;9==(<,1;:?>><>=>;>>><9<>>>>>(=0&---;>>>&7=>>>>);;>>>>17=6*59$6<9<;>650:2>=?<>+,+(5>@=;??18<############################ MC:Z:121M30S MD:Z:37A22A2A14C6T6C23C3T7 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:8 MQ:i:60 OQ:Z:49:@@@9+3>?@:>99@>@?<@?@?????>?;>??>??????>?>?????????>??>>>>=>>>>>=>>>>=>8:)>>>?>>>>>=>>=>>>=>>>?>>=>>>>=>?>>=>>?>>=======<=====<======<<=====>?=?=8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A7F7AKKA,7FKAFF<7KFKKAKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAF,KKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:2220:14336:54102 163 1 14804903 60 151M = 14805087 335 AAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTNCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGAT <>>>>>>>==<8=<====>==<==>>>=><>>>>==>=>>>=>==>>>>>>>>=>>=>>>>><>>=8>=>>=>>==?=>?>>>>>;<#>>>?>???@??>>??>>?@??>??@>@?@@@@@@?@@@#<<@@?A@@@@?A@AA@BA?>;88> MC:Z:151M MD:Z:87T63 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAFKAAKKKKKKKFKFKKKKKKKK@?A>AAA@>@@@@9=7@?@@@@@A@@@A?=???????=?????????????????@?@??=>=@@??;???>?>>?>>=>>??>>>>;>>=?>>>>??>>>>>>>>?=>===>>>>>>>>;<>>>>>>??>@<=<<9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:#FAKAA77<,,?>>??>==9>========<============<<=<>8<<=<<=>>=>>>>=>>=>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>>?>>==>>=>>?>>=>>@>????????>???>?>??>????>???@@?@@@@?><;:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKK<7AFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKF UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:2108:15392:72350 147 1 14804914 60 2S149M = 14804706 -357 GGGGATGGGTGGATGGCAGTTTTGGACACTTGAGACGCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTN ##650?3<@AA;A@?;5<9A/?@@;:4?;@>;@7>.'@@@>?9>?=58/=>=7-??>?=:>80<5<*=>1>><=>=?>:(>><;>>?>>=<>>;>>?>>=>>><><==>><7>><>=<=>>>>=>====>-===>>=<=<===>=?;><<# MC:Z:151M MD:Z:34C113T0 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:##F<,<7AKKKAA:<>>?>>>>>>?>>>>>>>>>>?><>>>>;>>>>>>>>>>>>>>>>>>7;>=>?<=>>>?;>>>>>>>>><>>>>>>;?>>>>>>>?>>+=<=>??>7<==??>?7-6997,6?-19)2.-?'9>@;><################## MC:Z:151M MD:Z:126A7A3T12 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFFFKKKKKKAKKKKKKKKKKKFKKFKFKAFFFFKFFKKKKAKKKKKKKKKFKFKKKKAKKKKKKKKKFK,FFAFKKK7AFFKFKK7,A7A7,AF,7<,7,,F,AAK?????????>??>???>?????>????>??>>?>>?>>>>>=>>=>>>=>>>?>>=>>>>>>?>>=>>?>>>>>>>>>=>>>>>=>>>>>><<=======>==<=<=<==<======<>?=?=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKFKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:4:2109:5355:66039 147 1 14804923 60 151M = 14804562 -512 GATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTT ##::=?A:/>A@<=A?72/9???>7@@@@@@;<>9?@?;;=6?,-?>>:@:9=7?>?@=?@@@???@@>=;:<>>>?>>>>>?>>>:>>>>>>=>>=?>>>>>>>>>>????>???>???=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:##AFFKKA,?>======<<=<===<=<<========<=>=>>>=>>>>>=>=>>=>>>=>=>?>>>>>>>>=>>>=>>>?>===>>=>>?>>=>>?>??<>>???>???>?>??>????>?????>?@9?=@>@?>@>@@@@@@@@@A@@?<:?@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKK??>><<=<===<=<<=========>=<>>==>>>>>=>=>>=>>:<>=>?>>>>><>>=>>>=>>>?>>==>>=>>?>>=>>@>>???????=>??>?>??>????>?????>@A@@???@?@@?@@@@@99AAAAABAA?A?=?<8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@?@?@@@@A@????????????????>?????>???@?@>>=>>>?>>>>>>>>=>>>=>>>??>>>=>=>>?>>=>>?>>>>>>>>>=>>>>>=>>>>>>><>>>>>>>?=>>===<==<======<=>?>>?>>>==?>?><*>:9/2*/;**/0?><7<8-2:;36**/>8;==2<6==6->=6,->8>7*==;;>6?>><<>;:=80;;<>>9<>=>==>><,>;6:9=/;8<4801.<0/9-/:,=====<,=>==>=>=>=<>;>:==> MC:Z:151M MD:Z:22G96G31 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:A<,,><><=>><=9;=======<<<=<===<===>>=>=>>=>>>=>=>?>>>>>>>=9;>>=>>>?>>==>>=>><=>=>>?=>>>>>>)<><=?>>>?<>????>?:???>?@??>?>@1:>>?/?0@??@@A@@A@@A@?@@@==### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFAFFKKKFFFKAFKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKFFKKKKKKKKKKKK,AKFFKKFKKFKKKKKKKAKKKKKKKFFKKF7AFKK,A,AFKFKKKKKKFKFKKKKKF### UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:6197:55614 147 1 14804939 60 4S147M = 14804810 -276 GAAGACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTCCCTT #############@?;@=>8*7=),-.)>>@7>@:??@;818=1;9,<;>-7/????=7=8=<,:(8==<6<8?>?=4(==8++,=78(=>>>>>>=8=8,>6>6<>>>=0489>>>>>>>===>>>>=(6?0,?>>>>><>>=>>)<<>< MC:Z:151M MD:Z:142T4 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:#############KF=>8<9+.0+7?A=@@@@@@@>@A:A>?>@@?@????????<<=<;7??@@????????@?????@?=??>;8>::>;>>>>>>>>>>>8=>>?>?>>>>>>>>>>>>>>>>>?>>>=>>>>>>>>>>=>>>?>>>??=;:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:#FF77F<<7A<,,,,7AFFAFKKKKKFKKAAFKAKKKKKFKKKKKFFFF<??>>>>>>>>>>>>>>>>>>>>?>?>>>>>??>>>>>:>>>>?>>>>>??>>>>>>>??>?>?@@??>???>?=????????????@?<:7:???@@@7?@?=8?A@=?@@@@<>>>>>>>>>>>>>====;:>>=??=>>><>>>>>?>>>>>?(8=>>>>>=>>;;>??>>>>>=>>?>>>>>?>>>>>>>>9>>8>=>?>>>;?>>>>8>?9<@;A6=@@>>>4<994 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKFKKKKKKKKKKKK,AFKKKKKFFKAFKKKKKFKKFKKKKKKKKKKKKKFKKKAKK7FFKKFFKAFKKKKKKAKFKKKKF@>?=>>>======<=<==<===<=<=>========<===<;>='8>==9>=>>?>>=>>?=*<>>>4>>=>>>;>=>>=6>>>=>>>>>=>?>>=>==1<3=>>>>??>?=4*>@>???>???=??>=??@>??@@?@?@??==8>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK,??@<>*@@???;????;?778=?>@>:*=?5:?=??==>>>?=<==>>=>><>>=>>?>>>=>81>>=><10>=>><;>>==>>=>>>>?=>:>=>:>><>>====<==>==>==<9<===<==<===>==<===>>>=>???><> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:???><>/>=8;<=>><>=>>;=<;=?>=&<><<>>>>>>>>>?>><>8>>>>?>>>>>;;=8/8>=>5=>90<1>0=;?.;.(9///???.:*.;>@?>../..8@@@>?/:./>?<1A@A9=@A>/6=:@A>AB:9<:A1,:= MC:Z:151M MD:Z:32T118 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKAF,FK7?=>??=>>>>><=<==<===<=<=;========<===<===>=>=<>>=>>?>>=>>?=>>>>>>>>=>>>=>=>==>>>>=>>>>>=>?<>=>=>=>>=>>>>>>=>>@??@????>???>??>???@>?>??>??@?@??@@?::;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAKAF UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1123:29701:26782 99 1 14804957 60 151M = 14804983 177 TGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTTCCTTACTCTTCCTTCACAAGCCATAA >?=>??=>>>>><=<==<===<=<=>========<===<===>=>=<>>=>>?>>=>>?=>>>>>>>>=>>>=>=<>=>>>>=>>>>>=>?>>=>=>=>>=>><>>>=>>@??@????>???>??>=??@>?>??>6?@?@=??@?>=;>>?>>==><=<==<===<===;>>>=>=>>=>>>=>>>?>>==>>=>>?><<>>?=>>>>>>>>=>>>=>=>>=>>>>=>??>?>?@.===>?>??>??????>?????@?@@?7@@@><@>@@@A<@;@><;A@@A=AA;;@@=;:=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FAFFKKKKKKKKKKFKKKFKKKKFFK???>>>>>>>>>>>>>?>====<>>=>>>>>>>>?>>>>>>>>??>>>>??>>>>>>>>?>>>>>?>>>>>>>>>>>>>>>??>>>>>>>>>>>>>>???@?@??@?>>>??>??@???@?@?@;@??=@??)==@8=@@@A?><;;# MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:A<@?A+=:@@68/@=<<7?@>?>;???????@???>????==>;==>=>>>>>9==>><>><>?>>=;=>=>>=>>>>>>=>>?>>?>><<<>>>==;9===>==<==<===<=========>===>?=<<>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KFFAA<<?>>>>>?>;>>>==>=>>?>>>==?>>>>>>>>??>>>>??>>>>>>>>?>>>>>?>>>>>>>>>>>>>-8?>=>=>?>??>???@?@.<+?>>??7@??@?>?@?<=><=(@?8=######### MC:Z:151M MD:Z:137A4G8 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKFAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF,AKFKKFKKFKAKF<.?69@@?=<8@?>/)9/19*?>87;:<>;<7A?@@A@<@?==9>>????>@??<=6???@>??@?>?=<,@??>>>@>>>>>>>>>>>>?>>==>>>>?>?>>>>>>>>?>>>>>>>?>>?>?>>>>>>>?>?>:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:FFKFAA<=?@?@?@@7?A@@@@??????>>58??????>?=)7?>><>:??:=?><3:>4=>9>>:>>==>>=>>>;>>>>>>=<>>>>>=>=>>>>=>=>>=>>>>>>?>>>>><=<==>=====<<=====>======<<>??=;8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:#KKKFKKFFFFKFKKKA59>?>>8??????;;>>=7/>>>>>=>>>>>>>=>=79>>=>>=>>>=><><>>==>>>>>=>=>>>>=>=>>=>>>>==>=====<=<==>======<=====?==>==>==>>>?=;>?> MC:Z:151M MD:Z:5A145 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:FFFA<,FA?????@?@?@?@????>?<>???=>=??????>???=>=>><<>>>>>=>>>>>=>=>>>>>>=>>=>>>=>>=>>>=>>>>>>=>=>>>>=>=>>=>>=:>=>=====<=<==>======<=====>========>>>>?<>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:19??>==?>?>>>?7>?>>?>)<041'5=;8?>>?>>>?>>>>>>>;?>>>=>>>>>>>?8<8<>>>>?>>>>>6;?9>>>=8>=;,).8=?;>?@?..-98;>+'>?;>??6.=5:'/7*=:@:>A@A7.;>@@@@>######### MC:Z:151M MD:Z:122A20G7 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:A,AFFFFFKKKKKKK>@?>>?>??>>?>>>>>>>>>>>?>>?>>>?>;5=>>:>?>>>>=>>>>>><>>>>>>=>>>>>???>?>?<3.>??@5?=;=>>@>?????????>??>?@@@@@>@=9?@@@?@@@A@@>A@??A??9==8<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF7FKK?;7?;)-?<@@?@@?;=<?::;=@@???>9:7?>??>:-@@?>@??@@??>=8@?????@>?>@>=?>>>?>?>>>>>????>???>>?>>>?>=><>?>?>>???>>>>?>>>>>?>>>???:=< MC:Z:151M MD:Z:146 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:##############F7;?>???>??>>?>>>>><>>>>>?>>?>>>?>>>>=>>>?>>>>>>>>>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>>>>>>??@>?>>>?????@?????@>@??@???????>???@>>@@@@):>@?>=:<>?8>??>>?>>>><>40<:4?>>?>=8?=>>><>96?:>48>>=>>>>?>>>>>>>>?>8>@>??2<;??8?>>?:>;??>>>8;?>>??-,7,,<<0>???A?@@<=<)/);@6-(./9>*@4/>*2<)>=*?#### MC:Z:151M MD:Z:93A30A4G7T13 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:4 MQ:i:60 OQ:Z:AAFFF?7<.@@@@@@?;7@@?>=5*6??@?????;8=?????==???????????=????9??>>>>>>>>>>>>>>=>>>>>>>>>>>>>>?>>>>>>>8>>>>?>>==>>>>>>?>>>=>>>>>>>@?>==9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:######KAAA7<(<7KFF==-@>>?>>>><<>>>>>?>>?>=>?>>=>>>>>?>>>>>>>>>>>?>>>>>;=>?>>>?>>>>:???;???@????=????@???;????@<@????????@??@?=A@A?>A@A@@@@@@@@>@:?@A??@AA?@A>?>=;8<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:AAFA,KKKKKKKKFFKKKKKKKKKKFKFKKFKKKFKKKKKKKKKKFKKKKKKKKAFKKKKKKKKKKAKKKAKKKKAKFKKKKFKKKKKKKKAFKKKKFKKKKKKKFKKKKKKFKKKFFKFKKKKKKKKK>??>>=>>>>>>>>?>>?>>>?>>>>>>>>?:>>9><><>>>?>$/>>>5=?>>>@;=?><;@?>>8?<4=<2/6@@@?<@?@=?@)79??@@@<#### MC:Z:151M MD:Z:48C102 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFAFKAKFKFKKKKK,7FFF7FKKKKKAFKKAFKKFFAKA7FAFKAKKKKKKKKKAFKKKKAFKKAAKKKKKFAAAF7,>????>>>78.>;:?=><>:>>=>>=>>>=>>>>>>>>>>>>>>>=>>>>>==>>>>=>>>>?>>>>>>>===>===>>=<=>=>=>======8<=============>>>>>>=>??>>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:====<=====<===<===========<>=>>>>>>=>>=>>>=>=>=>>=>>>>>><<=>>>>>>=>>=><>>>>?=>>>>>>=>?@?>?>??>?????@???????>???????>:??>@@A@:?@?>@??@?@@?@@>=:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAFA'>:9@<@:)88?@?>???>;=>7<;>?????@????????????@??>:>>??@>@?>>>>>>>>>>>>>?>?>>=>?>>>>>>>>=>?>>>>>>>>>>>?>>>>>>>>>?>?>>>???<=?< MC:Z:151M MD:Z:3A147 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:#####FFKKFA==<=====<===<===========<=<>>>>>>=>>=>>>=>=>=>>=>>>>>=>>=>>>>>>=>>=>>>>>>?=>>>>>>=>>;?>9>??>?????@???????>?????????????@A@@@@?@@=?@?@@@=@@@>;:7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKAKKKKFKAKKFKFKKF UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2108:5101:51711 163 3 17077053 60 151M = 17077363 461 ACCTGCTTCCTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAACTTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTCAATTCAAACTCTGCTGTGTAGAAG =6=<=====<======>===>>====>=<>>>>>=>>=<>>=>=>;>>=>>>>>>>>0>>>>>>=<>=>&>;?<>;??????>??.=&><=?>??>???>>:@???7??:?9?@@+>>@/?)1./@81@0'A9AA@########## MC:Z:151M MD:Z:74A51A14A9 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKFKKKKKFFKKKKKKKKKKK7FKKKKKFAKKK,A?:??>>>>=>=2<=<===========<=<=8;===<==<===<;===>==>>>>>>>>=>>>>>>==><:6>>>><=>>>>>>=9>?>=>=>>=>>>>>?>>>>>>>=>???????=??>??@????>??;>?>???@@@@>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAA<==@?>>>>3;>?>>>>>>>>>>>?>>6:>>>>?>>>?>>>>>>?><>>>?>>=>9>>>>=>>?>>>7>;>>?6<>>>>>>>>?>;>>>?>?>>@>@??>??,>(:+6,6:;>>=??6,9-<;638-;7@>:??8;?@<72.-)8><### MC:Z:151M MD:Z:103G5G38A2 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:A8:<<@?6<.>??=:<92;<-/>;4:-:7??>?8>??;*?95->?6/<9??<6:==???=>=490;/5>>>:*;==;=><>>7=;5;;>==>>>>?>>==0;.<;>>;/:>>;=;=>=>==<<<=====<=;0==<=:70===<=?=18?= MC:Z:151M MD:Z:42A29A78 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:FKKKFKF7<,<@>=?@@@??>?>???>?>??????>??>???>???>>>=>>>>>>=>=>>>>=>=>>=>>>>>>?>>>>>=>=>>?>>>>>>=>>>>>?>>>>>>==>=>>=<===<=<==>====<=====<=====<=<>==>>=>>@?=>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKAFAKAFAKKKKKKKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:2122:17411:52924 147 3 17077062 60 151M = 17076813 -400 CTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCT <67?A@@?:5+;@@?@@@@@??@>?@@?>??????>?>???=>?>??=>>>???@?????6?=>>?>>>>>>=>>>><5>>>>>>==>>>>>=>>>=>=>>87873===<=====<====>????>=: MC:Z:103M1I47M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AKKFA,<7,KFKF?>?=?@@@@@@@@@??@????????@??=@??????@?>???@??>???>?>>>>?>>>>>>>>?>?>>>=>>>>?>>>>>?>?>>?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>>>>?>>>?>>>??>>?>>>????>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:FFFFKKFFAFKKKKKFKKKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:6:1120:25712:20120 147 3 17077063 60 151M = 17076752 -462 TGTTCCCACTTTTGTGGCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTGTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTG ##################?>@?))).>@:)9>))8>:7)-;>@==>(??6<52-8=>>=95?;?<>??;?@???<.7?;>>:(,';>&>>=:6>>>>>>>>7;->>>>>>>>>>73++,;-54+,=7=<>7?;>>??8580;>>>?9;9=- MC:Z:151M MD:Z:16C70C62T0 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:##################A;<=>>>>>====<=<======<==<===<=<=<==<====>><>=>>>>>>=>>=>>7>>>?=>>>>>>=>>?>=>=>>=>>>>>?>>>>>>>=>>>>>>>>>>>=??@????>??=>?>???????>=?>???@@A@@@??>>;:9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKFAFKKKKAFKKKKKKKKKKKA UQ:i:0 AS:i:151 +HK35MCCXX160204:6:1221:21054:54453 83 3 17077067 60 151M = 17077030 -188 CCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCC 7878??@@@@@@>:7@A@@=>>??;>8=?@?<>>>;@?????@???>?=>??>>>?>>>>>>>>?>?>>>>>>=>?>>>=>?>?>>?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>>>>>>=>==>?>>>??=>?>>>?>?>>??@?>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:AAA7KKKKKKKKFA7KKKKFFAFFAF7AKKFAFFFAKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1203:18994:66214 99 3 17077070 60 151M = 17077224 305 ACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAACTTGTCCAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAAT >9>???7=.=>>=<=<======<==<===<=:=<;=<======<>==>>>>>=>>=>>>>>=?=>>>>>>=>>;>;>=>>=>(=>>?>>6>>=>=*<>>>=>>>>>=>8???>?>??????>>@?>>????@@A@??@A@<;;;A MC:Z:151M MD:Z:89A5A55 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFK>?>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>>>>>>>>?>?>>>>>>>>?>??>?@>@??@?@??????????@???????????@????????@A@A@@@A;?@AA@@A@@@A@AA@BAAAA?A?>=<86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKFKKKKKKKFK><======<==<===<=<#===<=====>>>=>>>>>>=>>=>>=>>>?=>>>>>>=>>?>=>=>>=>>>>>?>>>>>>>=>>>>>??????>?????>?>???=?>??@?>??@@@A?>@?@@A@=@>@@?@?/73:@ MC:Z:151M MD:Z:24A126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFFFKFKKKFKKKKKAFFKKKKFAKFKKKKA,<7A7 UQ:i:2 AS:i:149 +HK35MCCXX160204:4:1114:8887:45470 83 3 17077081 60 151M = 17077038 -194 CTCTCCCATGTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCAC 4=8<>>?7>5@;>80AA@>666:8:???>@?<=?=??*'@?@???>?@@@@?@@@??@>?><>=>>>07=>>?>?>>>>>>>>>;?>>>??<&>>>??>>>?<>>>>?>?>>>?>>>??>>?>???>?<>???>>>>>>>?>;=>???=>> MC:Z:151M MD:Z:0A8T141 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:7AAKKFF7A;:;?=%&>>>?>>>>>>>>>>>>?60>>=>>>=>?>>>>>>>>>>>?>>>>>>>>>>>>>>=?>>>??>>?>>>?>=;%==?>>==>=>>>>>>>>>>>>>>?>>>@> MC:Z:151M MD:Z:7C4C108T29 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:3 MQ:i:60 OQ:Z:FF7FA<,,FA<,,KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK77KKAKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF<,KKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:33 AS:i:136 +HM3G2CCXX160308:2:1101:29031:56528 99 3 17077090 60 151M = 17077406 467 TTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCT >@=??>>>>=>==<<=<========<===;<=<==<======><>>==>>=>>;>=>=>>==>>>>?><<===>=>=,>=09<>=>=>><>>=>=>>==>=>>>>>=>8(>=:4=>=??@?>????>?==>1:@?@?=?@@>=;:A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAF<:0&5>>>=>4<>>>7>=>>>=>=>>?>>>==>>>>>=>>7:>=><>=<==<==>=>=<==>=<====<=======<=<=<===>>=???>@?@??@@@???>;>????>?>??>>?????@?????=>=>>?>>>>>>=>>>>>?>>>>=>==>>>>>=>>>=>=>>?>>>>=>>>>>=>>>>>=>=?><>><==>=>=<==>=<====<=;=====<===<===>>=>??>?>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKFFFKKKKKKKKKKAKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2113:21552:53908 163 3 17077098 60 151M = 17077279 332 TCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGT =<9<=>>=<========<====;<<==<======?=>>>>>>=>>?>=>=>>==>>>>?>>>>=>>=>>>>>>>><===>>?>>>>=>>>=>>????????@?>?????@?@?>2>=?):>>?>??@@66??>?==>@?@A=@1@?7;<;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKFKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF,AFF,AFFFKKKKK<:>=>?>>?>>>>>>=>>>>=>>>======?>?>=====>>?>>>>>?>?>>?>?>>>>>>>>>>>>>>>>>>>=>>?>>>>>>>>>?>?>>>>>>>?>>;>>>>?>@??@??@2=<::# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKAKFFKKKKKKKKKFAAFKAAFKKKKKKAFFFAF7FF>6>?;:=>=>>>===<>>>>>7>>>98?>>3<>>=>?>>>>:?>?;>?>?=;=>><<==>>>>=>?>?<:>>@;???).<,;>9@80?1-9-:0=8@@,@@>@-@4A>()8=A'/(??@@=B8=AB@:7## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AAAFAAKKAFKKKKKKKKKFKKKKK=>?>?>>>>=>=====<==<=<====><======<==>=<=<=>==>>>>?>>>>>>>=>>>>>>>>>>>=>>?>>>>=>>>=>=>>>>>>>>?>=>>>>>?>?>=>>??>????>???????>?>?>??>??>?:@?@@@?@@?==;;6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKK7 UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:2212:21004:54295 99 3 17077107 60 151M = 17077269 288 TGCTTGTTCATGGTTCTGAACTTTTACTTTGTTCATAACCCCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGGGTAGAAGTTTATATCTTATCCAATCTGGCCGTCACTCCTCTTCTATCCCTGTTTCCTTACA =:>>>>=>>==>>>>&;==>>>>=>>>>>>>?>=;=>?>?0;?>?=>:>>>>/<>>>>>>>>>>>>>?>>=>>>>;>?<=4>>>(2>>>8>?@?@??@?@?????59//)0)$-'.0:11:1;=:A@?@@2@@;?@@??;:7; MC:Z:25S126M MD:Z:20A18A49T30C17A12 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKK,FFKKKKKKKKKKKKKKKKFKKKKK7FKKKFK<;>=>>>?>>>-;>>>?;?>>8=>>>>><;>>>>>?9>>><<-->>9>>--5==9>9>>><>>><-:>><<>?@?@9??99=?,(9-2++9-<:;6>?=<>=9.7:?>)'2):(./@?@;(@@9@?A:8/-4,>>@9@@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFAKKAAKFKKKKKKF,AFKKKFKKKAFKKKKFAFKKKFKKAKFKAA,,FKAKK,,>>>??>>>>>?>>>>>>>>?>?>>>>>>>>?>:>>=?>?>?>>>>>>>>>>?>>>>>>>>>>><>>>>>>>>>?8?>>>?=;>?9>>=>>>;>:>2?>?;=>????@????@<>@???=??9?@=@)?######### MC:Z:151M MD:Z:143A7 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKAKKKKKFFKKAKFFKFKAKAF7FKKFFKKKKKKKKKKFF=?>===<==<======><==#===<==>=<>=>>=>>>>>?>>>><3<'9/=>><>>>8>==>0<>>>=>>>=>=>>>>>>>=?;:>>?>>@???0>=????>?==09??>?>?:<>??@?@;=?@@@@@@@?;A@199@=4B6 MC:Z:151M MD:Z:24T27C68C29 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKFKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKA7F,A7FKKAKKK7KKFK7FKKKKKKKKKKKKKKKKKFKAFKKKFFKKFKKKK7FFKKKKKFAA7AKFKKKKAFFFFKKKA?>>??>>>>?>?>>>>>>>>??>>>>?>?>>?>????>>>>>>??>>>>>>>>>>?@@=????@@??>@???@???@@?@@???@?@9>@?@???@A@?A<@7<8?:@@@?@A@A.9@<@@=?=9<@>;A<>@A@@>9;8<7: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:A?@A@AA>AA@A@?AA@??>@@@?>@@@@?@@?@?@????>?>>?????>???>?>??@????>????>?>>=>=?>=>>=>>?>?>=>>?>=>>>>=>>>>>>>=>>>=>>=>><=?><==>=<>=<===>====<>>??>=: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:#FAAKKKAKFF?=?>?>=>>>>==><======<==>=<=<==<=====>=====>><>>>>>>>>>>>=>>?>>>>=>>>=>=>>=>>=>=>>===?>?>=>>?>=>>=>=>>>>8>?>?>?9??>??>?@?>???????>???:=>@@>@???=<34 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA?>??@??????>?????@?????>==>>>>>=>>>=>=>>?>>>>=>>>=>=>>>>>=>=?>=>>=>>?>?==>>?>=>>>>=>;>=>>=<===<==<==<=>=<====<==<===>=====>=>?>?=>8=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:7:1210:28280:55086 147 3 17077122 60 151M = 17077010 -263 CTAAAATTTTACTTTGTACATAACACCTCTGCTTAAAATTGTCAAGCGTTTGTGATTAAACTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGT ######################@@?94/>.::.7??.@.>7??>05#78<.&.,/.+>.<*7:-.=>;>9<>=..2>==>>&>,<>>;72.+/-(2..>)//281)7(8;=9>=7>7<;><>>=>5>>-=>-582.-95<=?>98::==7- MC:Z:151M MD:Z:2G14T28G13T85C4 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:5 MQ:i:60 OQ:Z:######################FKF<7,A,A<,7AA,F,==??>>?>>>=>>>===>=:>>>?>?>=>>?>>>>>>>>>>>>>=;>>>>>>>?>7>>><=>>?>???>????????9=??@?@??@?@?:<=?????=??:@?@@A@>A?A@@AA@@*.@>>?@48A@-7:?@@B@A=@A<65;59<8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKK7FKKAFKKKKKKKKKKKKKKKKAFKKKKKKKKKKKAFAFFKFKFKKAKKKKKKFKFKKKKKKK,,FFFAK7??<=:=@@A@?@9@@?@@??;@????>?>>?????>???>?>??@??>=:==7<>=>>>>>=>;?>:>>=>>?>?>;>>?>=>>>>=>>>>>>><;/;=>>9>>=>?>=>>>=<==<===>====<=<=>==>=8<=<=>>?=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKFKFFAF=>=<=<==<====;>====;=;<===<=7===7====>>8:;=>>>:>=>=<>>:*=>>>>>?>?>=>>?>=>>>>=>>>>>>>=>=:=>>=>>=>??=???????>???@60??>?>?@??@=;19>99?@?><;:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:>>>7>>>>>>9>?>?>>>>>>>>>>?>>>;===>>>>:>>>>=>>>>?><>>>?=>:@==>@6>?6;;????>??@??@@?@?@-8-=@@@:7819--;@@A8A@AA<>(099@:9.487## MC:Z:151M MD:Z:18T119G11A0 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:3 MQ:i:60 OQ:Z:AAFAAFKKF;??=???/45??>=???<4=>>=?>?>>??>>5+>>>>>>;?=?58>6-<-1?>>?<9>?>>>>?>>>>>???>7?@<;< MC:Z:151M MD:Z:6A27T69C46 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:3 MQ:i:60 OQ:Z:###########################################KF<,<<,,F<,,F<,A7A,,,AKKFAKKFKFF,<=<>?>?>>?>?>>>>=>>>=68<>>>>>>>>>>?>>>>>>>>>?>?>>>=:>>?@>>@?>?>=@5?@?@?=??>??@?88<<==??@??@?@?>@<=7=?<>@@@@:A7>==@@@A@AA@@-93/38><################# MC:Z:151M MD:Z:134A7A8 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:AAFAFFKKKKKKKKKKKFKFKKKKF7AFKKKKKKKKKKKKKKKKKKKKFKKKKKFAKKKKKFKKFKFFK7KKKKKFKKFKKKKAAFF>?>?>>>>>>>>>======>>=>>=>?>>>>>>>>>?>?>>>>>>>?>>>>>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>?>>??>>>>???????@?@>>>??@?@@??@????>?????????@@@@@@@@A??<:9? MC:Z:151M MD:Z:122C28 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:>@@@>A@>>=@=<6@@>@?>>>3?>??@????>???????>;>8;=7>>?>?>?>=>>?>=>>><=>>:>>>>=>;>;>>=>>=>?>;>>>>=>>=>>>?>>>>=>=>>==>==<9=#=<==<=<;*>=<=====>@?>=?= MC:Z:151M MD:Z:122C3T24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:#FKKKFKKKFKK<?@@@?@?@>70???>?????>?=:-;7?>@?:916?:5.@>>??@>>=8;<=;;><<8,*-<=*;3=>>8>?>=<;=>5>>9<=4'<;>>==9;7/><=:<====>=9<=====><=;=:<=====>?=9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKFF?>>>?>>?>>>>>>>>>>>?>>>>>>>>>?>?>>>?>>>??>>?>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>??>???@?@@??@?:?@????@??>??@@>.=?@?@?@?@@@@@@@@@A?>;98? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKFKF,AKKKKKKKKKKKFFKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1217:20182:19540 163 3 17077161 60 151M = 17077403 393 TGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTT =><>=?>========<==>====<===<=<====>>>>?>=>><>>;>?>=>>?>=>><>=>>>>>>==>=>=>>=>>=>?>=>>>>>>>=>??@>???>?>?4=?9>?>????>?=?????=?>?<>>@?>@?@@@A@@A@>=<@>;:8? MC:Z:151M MD:Z:107C43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKKFKKKKKKKKKKKFKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>?>>>>>>==>=?>>>=>>>>>?>?>>>>>>>?>=>>>>>?>?>>?>?>>>>>>>?>>>>>?>>>?>>?>@>>???>?????????@?@???>?@?@???@?:=>;?8>82>?A@@AA@?5?>;:8@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKK?=>??>>>>>>>>>>>>>>9>.9=>>5=>??>>>>>?<=?>?>><>>>>?=>>><<1>>?98?>?>::?>>>>>>>>>=;?>@;??>??6?96<9<5?==5>=9-5>=?@?:;7@@>/6,./;=@@@@@@6==>?>>7<8=> MC:Z:151M MD:Z:104C8G37 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKFKKKKFKKFFFFKAAKKFF>>>??====<==>===><=>=<==>===>>>>?>=>>>>>?>?>=>>?>=>>>>=>>>>>>>=>=>=>>=>>>?@?>???:???>????>??<>>>>@??99+?@?>@>??0+5:@A@@;0:6@=?AA4A@A@@@>98>; MC:Z:151M MD:Z:100A2C47 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFKFFKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKKKKKKFKFKKKKKKAKKKKKKKFKKKAKAFAKKK77,AFFAFKKK,,=>>=>0;<5-<7====<===<;;09<8<==<;+6>>>=<;.7./18?.));<.1&,,')21)6:3<20<=4;10><*5,;8;//);/-;>=7:=>&::<<*+:;0,*),0<>?=2<1348>#################### MC:Z:151M MD:Z:7G26G21T9T13T16T4C4T0G2G19T11T5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:12 MQ:i:60 OQ:Z:AAFAFAK,AA<,AAKKKKKKKKK7F,AFAFKKFF,AKKKFAF,A,7,7K,,,FF,7,,,,,<(,AFAF<,FF7F,7FF,<,A7A,7,7,7FKF7AFK,AAAF,,AA,,,,,,:=???>>>>>?>>>>>>>>>?>?>>>?>86>?>>?>>>?>?>>?>?>>>>>>>?>>><>?>>>?>>?>?>9=?,6<;>==>>>+(99<>:66+87==>=>@8=(2)/+6??')*9,;<78-;,;<@################# MC:Z:26S125M MD:Z:100C10G7A0G15C7 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKA7FKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKFKKFAAK,AFAFFFKKKFFAA<A>;@?@@@:@?@>???;>>??>>??<>=>>=>>>>?>=>>>>=>>=>>>?>>>>=>=>?>>>>>=>9>>=>>=>>>>?>=>;>>>>>>>>==>>=>=>====<=>==>??:>;< MC:Z:151M MD:Z:100C50 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:77AF?8?8?>>>=.9>??44???=??>??>?@?>?>?>;>>=>>>?8>>>=>=>?>>?>>=>=>>=>>=>>>>?>=>>>>>=>=<===>====>==>=<>=><>>?=*.6,.>1@>19<<969><<.;4.;>=7>>5=<(3->>854=9;5-*<<:><>:(>=8><<>1>>?:;.<>>>>><==<<4=<==55>>;==>>>=>>><2?@@=?@?@>???>?>@?>??>??@?@?>??@?>???>=<<>>>>>=>=>=>>=>>=>?>=>>>>=>>=>>>?<>>>=>=>?>>?>>=>=>>=>>=8>>>>>=======>=====>==<=>====<===<===<<>>>>>>?>>>?> MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:9>>??>>>>>>>=<=====>=>=<==>=<====<=======<==><>>=>>=>?>=>>>>>>>=>>>?=>>>=>=>?>>?>>=>>>>=>>>>>>>?>=>>>>>>?>=>>?@????@>???>???>????>???????@?@@>@@>>=;;? MC:Z:151M MD:Z:81C69 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:1124:19441:42517 83 3 17077193 60 151M = 17077008 -336 CAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGC ;:;<>@@@@@@@@A?@?>??@?>????>???????>???>??>?>=>?>=>>>>>>>=>>>?>>>>=>=>?>>?>9>>>>>>>>>>>>>?>>>>>>>>?>====>=>>=>=>=>====<====<========<=====<=>>>>>?>?>;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1120:21471:44661 99 3 17077194 60 151M = 17077397 354 AGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCG ?==?>@>>>>>==>=>====>================>=>===>>==>===>>>>>>>>>>?>>>>>>>>?>>?>9=>>>>=>><>>>>?>=>>>>>>?>>>>>?>>??@????>?????????????>??@>????@@A@A@@@?><;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKKKKKKFKFKKFKKKKFK UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2101:11282:13088 163 3 17077199 60 151M = 17077303 255 AGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTC =<>???>=>=>=<==>=<>==><==>>==>=>=>=>>=>>=>?>=>>>>>>>=>>>?=>>>=>=>?>>?>>=>>??>?>?????@?>??????@?>???@????@>???>@@@?@@@@?@@5=;@@@??@?A>=@=?@?A;@AA@:>;8<9 MC:Z:151M MD:Z:69C81 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFKKKKKKKK7AAKKKFKKKF9*3=(2'=9/<>?:=;>)<:?>?>>=>?=>1+>=>=><<>3=>>>>?=<98>>>><'<>>>?=)<>;<>>89.>>==::==>===<===<=<<,.<=======8=>=7=<=8<=>9 MC:Z:62M1I88M MD:Z:1A11A0T2A11A11T24A0C23A59 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:9 MQ:i:60 OQ:Z:################################AAF<,7A,,,A<,FKKAFAF,F=<====<=======#=<=<==;===>?>=>>>>>>>=>>>?=>>>=>=>?>>?=9=>>>>==>>=>>>?>=>>>>>>?>=>>?@????@>???>???>?>??>????????>??>==?@@@@@???@@@6@@@0=%A=:8@ MC:Z:151M MD:Z:24C126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKFFFKKKKKKKKF?=??@9>>>>>>?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>?>>>>>?>??>>?>>>?>><<98>>>>???>>>?>?>?>>>>>?>>>>?>>?>?????>>==??@??84=??9?>>?@?4@(:-;:A?@8=;98< MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFAFKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAAAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFKKKKKA?>===>===<:=<=<=<==<==<=>-;==>><>>=>=>?=>>><==>?>>?=7=>>>>=>>>,<:>?>=>2=82846;>>5<=<;>?59>4=.>;<<=+==?>??1=??>=?<7?>??:;?@61<@?5>@7/*7@@?@@@@/77;# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA=9=4<8-@A@@@@@@?@=?@@@?)@@@A@@;,=?=<&>????>???>=?@?:?@????@???????@>>>>?>>?><>>>?>>>>?>>>>>>>>=>>?>=>>>>>>>>=>>>>>=>>>>>>>>>?=9>>>;=>=>>>>>>?==<>< MC:Z:151M MD:Z:32C4T113 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:2 MQ:i:60 OQ:Z:FA7A7A7,>=?>>=>>>==;>==<=<==<==<>;=<===<<==<=>=><>>===<>?>>?>===<=,<<>>=<>>?,<&<==>;;>=>>>?><=>?:>>>=>>:=>>>>=>>>>=??>??>??,59?==::(&))60*:@-0;<@?><:9## MC:Z:151M MD:Z:55C17A77 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:;<>?>>>>>>>=<=<=<==<==<=>=<=======<===><====><>?>>?=9=>>>>=>>>>>>>?>=>>>>>>?>=>>>?>>>>?=>>>=>>>=>>>>=>>>>>>>>>??>??>???????????:????>????@@@@?@@?>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1107:25702:14301 163 3 17077217 60 146M5S = 17077598 532 CAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGGGTGTGGCAGGAGCC =98?>?>===<;))6=9==1==;=>=<==<3.7:9:>=':5>=>>>=<>>>>>>>?>=;>=%?>=8.<=>;>5??>>?:>9)*2;-5%>0)9*7=8>1???6;?'2:;7);>#################### MC:Z:151M MD:Z:51C84T9 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:A<;88<=A=<@@ABAAA@?7?9@@@@@A@@@A@@;<;@@A@>?=7????@??=:/=?>?>@@@???@?@@@?>???@?>@-@??>?=<@?>>>?>>>?>>>=??>>>>>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>?>5<:< MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:###A=<);;-81>;:6,<-9-(>9,71.2=/>>>?<>>8>>?>?>?>>>>>?>>>>><>>>=>>>8>>?>>>?>>>>?<>>>>>>>>>>>>?>>>?>6>>>:>>?>>>>>>>>>>?>?>=<;> MC:Z:151M MD:Z:1A4G7T14G20C100 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:5 MQ:i:60 OQ:Z:#######KKF7<<,,A<7<,AA,7FFFA<,<<,A7FA<<,A,A,,F<,77,7A7KKKKFKFAFKKKKKKKKKKKFKKKKKKKKKFFKKKFKKKAKKKKKKKFKKKKFFKKKKFKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKFFFAA UQ:i:37 AS:i:129 +HK35MCCXX160204:3:1124:31203:1784 147 3 17077221 60 151M = 17077059 -313 CTTGCCCTCTCGCCTCTGCTATCCATGTTTCCTTACATTCTCTAATACGAGTTGAGGGGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAAT ###########################@>.;<-8<:8@>A>;=,-,-8:/?<.6:9)*1?@?>)??@?=;:;-/,.+566>:=7>>85?>>?>?>>>?>>><=>><<<>>>>;>>>?>>>>>9>>>>><<=>>;>>>>>>?>==?=>< MC:Z:151M MD:Z:2G6A1T5T39T93 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:5 MQ:i:60 OQ:Z:###########################FA,AA,7?@?9:=;<@>@@?;<=?;???>??>????>???>?>>?>=?>>=>=>>=>>=>>>>?>=>>>>>>?>>>>>?>>>>?>>>>=>>>=>>>==>>>>>>>=<<====<===========8===<<===<=<=<=====>>>>???>>? MC:Z:151M MD:Z:44A2C103 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:A>>>>=?>?==>>=>>>>>>>>==?>?>>>>>?>??>>?>9>;::;>>>>>>>?<;>>=>>@????<7>=,>?>@????????????>??@=??????=@@@7;@@@@@A@@@@<2>(;. MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:<-=6=5?8@?@>@=?@?>???@>???>?>?@??@?:>?>?<>>0>????@==>>>=>>?>>>>>;>>>>:<,>>=>>>=>>>===>>>>>><<8>>>><>>>>>>>>>==8===<<===<=<=<===========>??==;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A<,KAFFAA<,A7A7A<6/2<>=:=74:=(0+(/))'-)1&)&;+4179:1<+9-//5/.'.9(6;7,:9'=1><,==5;82686,+<2,=<==<====>:<3-?;/,9 MC:Z:151M MD:Z:11T2T10C17G1G3A31G36G1 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:8 MQ:i:60 OQ:Z:###############################################FAA,A7<,,,FFA,7AKKAK<<<;?>?>=>>=>>=<====<==<===><===<=<=>==0==<==>><>>>=>>>?>=>>>>>>?>=>>>?>>>>?=>>>=>=>=>>>><>>>>9<>>=>>=>>=>>>>>>?????:????>??????>??6>????>?@8?@?A@?>=::? MC:Z:151M MD:Z:39C111 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKK7KKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKFKKKKAFKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKK7FKKKKKKK@?+@?05+/9.@??83:>.9??:?>?@?????:01<<=?(1=3(*?>-><>=7;<>.76>?>>>>?>>>>:><>=>>>><6==88>>>=6:>88==7<89:=<*=<18881=3:=:<18==;=:=<==9;=9<8>:>;78@; MC:Z:6M1I144M MD:Z:36C114 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:###KKF<,A<,7,,77FKF<77A,@A?;@@@@@@@@?@?@???????@@??;=:?@????@???><:??????>?>?>>>>>?>>>>?>>>>>>>>>>>?>>>?>>>>?>8>>>>>>>>>>>?>>>?>9>>>>=>?=>>>>>>>>>?>>>>>>>>>?>:>?>>??>?;>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:F7FKFKKFAKKKKKKKKKKKKKKKKKKFKKKKFFKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKAKKFKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:5:1109:13210:48740 147 3 17077234 60 151M = 17077146 -239 CTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTA =98;>?@=?AAAAAAAA@@@@?@@@@@@@A@@;@@@?@@??@??????@@???@???@?????@>>??@??????>????@?>??>?>>>>>>>>>>>>>>>>>>>>?>9>>>>>>>>>>==>>>>>?>===>>>>>?>>>>>>>?>?:>< MC:Z:151M MD:Z:34C116 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:FFKKKKFF>>>>===>=>>?=>>>>>>>>>=>===>=>>=>>>>>>>?>=>>>>=>?>>>>>?>>>>?>>>>=>?>????????????????????????>????@@;:<@@><@@@>@:@?=:@@@@@@@?AAAA.??ABA?B>1>;:>? MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKFFAKAKKAAKFFAF4?;=;,/>4>8>,<5;;8-=>>8'-;'3?;;>>.(<;;<.'.(-;(-)-,;:;;=>>>1<;(8)'=??%8>69#################################################################### MC:Z:151M MD:Z:15T8C27A2T1T15C12A0T3G13C12G18T7 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:12 MQ:i:60 OQ:Z:,AF,,AA,FF;=???>?>>>>>>>?>??>>?>9>?>>>8=>;>><>6?;;><>?>?>>>>=;>>>>?>>>>>>>>>86==>7?>>>>?>><>>>>>>>>>1?>7:)62<<<93>???=;????9?@39>>A@@,>9=######### MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFFKKKKKKKKKKKKKKKKKKK7FKAKKFK7K??,;>9;(,+<8=>==>><>?>><>8;>>+>&>;0;<:8=>-=,98??/3&.+84>;6>5?-:88@=87)(/4>89)9>???<>>>???@@@@@@?@=7@>?@A?@A@############################ MC:Z:151M MD:Z:4C146 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFF,FFK,AKKA,,,F><>5,8-=>7&;<>?>>>>>>=+3=;>=>?>><>>9>><7>>=<>>=>>>>;>?;>;,8-,(=9>=))0=24>################################# MC:Z:151M MD:Z:7C76G30 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:2 MQ:i:60 OQ:Z:AA,FFKAKKAK<,A,FK<,FFKKKKKKKKF,>>?>>>>?>>>>>???>>>?>?>?>>>>>?>>>>?>>>>>>>>>>>?>>>?>>>>?>>>>>>>??>??>@???@?:???=??@??????????@?????????@??@A@@A@A@@@@@@@@@@@AA9@@>A@?:=@@>?><96> MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKFFAAFAFF<<??@>>>>===>=======>:<<=====>======>===>=>>=<====>>=<>>>=>>>>>>>>>>7>>.*=9>8=97<9><9098>>;:;>>>>;>28>>>>>?/..*:=>:9060<<8&-:(?(>@#################### MC:Z:28S123M MD:Z:6C104T11T2T1G22 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKFKFKKFFKKKKKKKAKAKKKKKKKKKKKFKKFKKKKKKKKKKKKKFFKKKFKKKKKKKKKK7KK,,FAFAF7??>9==>=><===>===>=<==>>==?>=>>>>>>>>==>>>=>>>=>>>==>>>>>>>==>>=>>=>:=>>>=>>9>9>?>88)=?>??>?????=@>??@>?@?@>?,>/)>@8:9<5;/=-=/,>/*9>::== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKFKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKAKKKFFKKAKKKKK7AFKKKKKKKK,FFFKKKKKKKK>>?>=>>>>?>?>?>;>>>=<=>=?>=>=:=3>7>>=>>>>4??=?@?:???;6<@????>??=6=:9??::8==?8>???<)/)0:?@9?>>A;=>-:9<(@;849 MC:Z:151M MD:Z:1A147T1 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:2 MQ:i:60 OQ:Z:A,AFAFF@>=>>=>======>=<======>=<===>====><===<>>==>>>>=>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>;=<>>>>>>>>>>9>>>=>>>>>>?>>??>??>???8??7>????@?>??>??>@?:@@?@@?>=;:? MC:Z:151M MD:Z:3C147 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?<>??>>>>>>>??;>>>>=?>?=====>>>>>>====>>>>>>>>==>?>>>>?>>>>>>>>>>>>>?>>>>>9>>>>>>?>>>>>>>>>>>>>>><>>>>?>>>@??@?@??@??;?????@??????;=?7;=???A@@@@>><:;< MC:Z:151M MD:Z:15G135 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKFFAK7>??=>>>====>=<======>=<===>====><===<===<=====>>>>>>>>=>>=>>=>>>>>>>>>>>8>>><<:>>>>>>>>>>>>>>=>>>>>>?>>>>=>>>???>?>???@9<4?4?@@@@@:>;;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKAFKKKKKKKKKKAFFKKFF7<7F7FFKKKF7AFKAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:2212:21004:54295 147 3 17077269 60 25S126M = 17077107 -288 CATGGTGCCGTCCAGTCTCTACTATGAGTTGAGGTGCCTAGAACGCTTAACAATAGTGTACAGGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAA #################@;@.).=@@A@@=<0?@?@=6-?8-9,???>:.0,-90/?7>;8>*<:;.???@????>???>><>>>>>:>>7>>>>><>>9>>>>=<>>2.>>>>>>>?;>>>>>6==>>>>>>>>>>=>>,->>??<>=:; MC:Z:151M MD:Z:18A11T1T4T88 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:4 MQ:i:60 OQ:Z:#################FAA,,,@>?>?>>>>>><=<======>=<===>====><===<===<==>=<>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>??@????????@?>?????>?>@????@@@@?A@>>=;;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:1:2119:11150:46929 83 3 17077271 60 151M = 17076974 -448 GTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGTCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCG 7;:;?==?(2>=?7??@???@?????@=>??@???????????@>>>>>>>>>>>>>>>>>>>>>>>>>>?>9>>>>>>>>>>>>>>>2>?>>>>>>>>>?>>>>>>>>>>>>====>>>>>===>=>>>>>??>=>>>>>>?>>???=5> MC:Z:151M MD:Z:88G62 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AFKFKFFA,7FAA@?@=.<8@?@@A@@?72(>0>>=>)?@????>???>???>>>>???>??>????==9=>=>;>=;=>8><>==>=>=>=>=>;>>=0=>>>>=/7?>>>>=>>=>>=?>>=>==<=>====<==<=<>=<=======>==???<7= MC:Z:137M1I13M MD:Z:22A128 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:A,FKKKKKA,<<<==?>>>>?><======>=<===>====><===<===<====<===>====<>=<===>>>>;>>>>:>9>>>>:9>>;>:>>>>>>>;>=>>>>>>?=>>>=<>=>>=<>?>??@?>??6??>??@>=9;@@/@AA@?@?=<6:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAAFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKAFKKFKAKKKKKKKFKKKKKKKKKFKKKKFKKKKFFKKAFKFKKKKKKK7AFKKFKF<?;1>=@2>6?:0@@:-9=7>,?<,9-8,;)6?>:489&;&9?8.>>>>;<9(>;<><'>6<%4?>2<198=;>>5>7=/=5'/496;6'4=>:86>>;;>>=;<:><=>>>>=>?==7>===<=6??;><9;>>>;>= MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:A,,7KKA7FAA7A7AA7KF<,AA7F,FA,<,A,A,7KF<<<7,A(AKA7KKKKFFA,KFFFF,KAF(>>?>>>?=<======>=<===>====><===<===<====<====>>>>=>>=>>=>>>>>>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>>>@????????@?>??>??=?=@?????@@@@A@?@@?>7;<@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKK@A@@@@A@A@A;?????????@???????????@???@????@?>>>=>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>>>>>>>>>?>>>?>>?>?>>>=>>>>>>>?>>>?==>>?>??>=>?>>>>?>>>>?>9?>?>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:KAKKKKKFKKKKKKFKAKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2114:28422:55930 163 3 17077279 60 151M = 17077474 346 GCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAA =;;?=?=======>=<===>====><===<===<>>>>=>>>>>>>>=>>=>>=>>>>>>>>>>>9>>>>=><>>>>>>>>>>>>>=>>>>>?@????>??>?>?@????????=?>?????>??@@@?@@@@@@A@?@@A?;@@@><99; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFFKKKKKKFKKFKKKFKKFFKKKKKKKKFKKKKKKKFA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2113:21552:53908 83 3 17077279 60 151M = 17077098 -332 GCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAA #>;2@8@@=@@?A?????=>*??@????>>?=>?=>>>???>>>>=;>>=>>=>><4>>>=>=>9>>>==>>>;:=>=>>>>><>=>>>>>>?>><>=>>=>>=>>><===<=>=<<=<==<=<>=<=======>=<==>>9>>>?<>>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:#AF7A=?>>=====>=<===>====><===<===<;>>>9;=;;8;>>=>;5>><;>=>>>>>>=<6;<><;;>>>=8>/>>>>><>=<<>>>>@????>?>>???@>?=9/=><@>>=?>?@@?@?@A@?@=@A:?@@7@;::9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAFAAAAFKKKKFAKKFFKFKKKKKKFFFAFKAFFKKKF7F,FKKKKFKKFFKKKKKKKKKKKFKKKKKFKF7,AF===>?>>>?>?>>>>>?>>>>?>=======>>=>>>>>===>?>>>>>>>>>>>>>?>>>>=9>>>>>>?>>>>>>>>>>>>>>>>>>>>?>>>?>>?>?>??????????@?????>?=?=>????@???@A@@@@@?;@@?@><<:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKFFKKKKKKKKKKKKKKKKKKFFKFFKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2118:27630:55825 147 3 17077281 60 151M = 17077067 -365 CTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGT ?:@82:@@@@;@1@@>8??=*>=>?7>>?<>???>>??=????:4>>=??>9>>>==>>>=>=>;>:,=>;>>>>><=9'=;8<6>>=>>=7>>=>>>=>?>>>>==;<=<>=<=======>=<====8=====>??>8= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KA<<,7KKKKAA,KK<>?>?>>>>><>>>=>====>>=>>=>9>>>?>>;;?>>>>>>>>>>=>>?>>=8;9>>58<;?9>>>>>>>>>>>>6<>>>>>?>>>?<>?>???@>?????;>?>???=??=1-=:>>==????>?@@@=><39> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAAFFAKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKFFKKKKKKKKKKKFKKKKKFAFKKK<>=<=<;83&>>=7$&$$$$$$0$2$$%&%)/4--/'*.><%;)=2/&>>)//(/%<$2/>123- MC:Z:151M MD:Z:12T1T5A15T3A7C4A22 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:7 MQ:i:60 OQ:Z:############################################################################A(A(FA7KAFKKKAKAF7<,KFFF(,((((((,(<((,,,,,A,,,,7,KF,<,F7,,FF,,7,,,A,7,A,,,, UQ:i:19 AS:i:41 +HTL2KCCXX160412:6:1108:14286:24690 99 3 17077290 60 151M = 17077346 207 TTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTAC ?>>?>?>===><===<===<====<========<==<==<=====>>>>>>9>>>>=>>>>>>>>>>>>>>>=>>>>>>?>>>>=>>=>>>?>>>>>>>>?>=>>>>?>??@?????????@?>????:??????@@@@@?@?>;;;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2115:15016:15971 163 3 17077291 60 151M = 17077479 339 TAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACCGGTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACA =:8<=?>889>=><===<==<<===.7;========>>=>>=>=;<>=;<>>>7>>>>=;>>>>>>>>>>>>>>=>>>>>>?>>=>=<>==>?@???8>?==>???????;@@79@88<:=@@@@@?@@@=<;7? MC:Z:151M MD:Z:105A1T43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AA>???>>>==>=<>==<====<====8<=>=>>=>>=>>>>>>>=>>>9>>=>=>>>>>>>>;=>>>=>=>>>>??@????>??>???@????????=<28:<>?.=><@@??@??@@-@)>.<78@?A@@??/6;@=AAA4B####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKAFKFKFFKKKFFFKKKKKKKKKKKKKKKKKKFKKKA<<7<>?>>>>>>>>>>>?>>>?>>>>?>>>>>>>=>>>>>?>>>=>$<<<==>?>>>?>?????@???????>?@???@??@?@=??????????@???>=?@@>=@A@@@A@@@@A@@@@??9@@=?@=AA?>@AB@?AA=6><4>; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKFK(FFFFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKFFKKKKKKFKFKKFAFKFFAFKKKKKKKKKKKKKKFFFKK>>@@>?@@<@?;@@?6;(>=>?@?<>/>??????4?=?:>?;?@?=??>>?=>>>?>9><.>>>?>>>>>>>>>;?>>>>>>>>>?>=>>>=8==>=>>>>>>><>>><>>==>>>>>=??>=<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:77A77<,F>?7@????>;@????8<<>??=??????>?:>>>==>>>=>=>=>>>>><=>=>>>>>?>><>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>========>=<====8====<<===<=<===<=>=====>>=>???>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:??>??>???????=<=?:<>>==>>>=>=>=>>>>>>>>>>>>>>?>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?==>>=>>==>=<====8====<<===<=<===<=>====>>>=>>?>=>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:?=???=>:>==========<==<==<===========8===<<>>=>>>>>=>>>>>>=>>>>>>;>=>>=>==>>>?>>>>>>=>?>=>>>=>=>=<>>>>>>>>>?>>????:?<=>;=:7=>?>???>?@>??=@@@??@@??97<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKFKKKKKKKKKKKKKFKFKKKKFKKKKKKKKKFFFKKKKKKKAKKKFFKKKKKKKKKKKKKKKKKKFAF?>==<========<==<==<=========>>9>>><<>>>>><>>>>>>>>>=>>>>>>?>>>>=>>=>>>?>>>>>>>>?>=>>>>?>??@?????????@?>????:?????>????@>@@@?@A?@@?@@@?A@@@A@?<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKFFKKKKKKFK UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:1222:28757:53522 83 3 17077308 60 151M = 17077115 -344 ATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGG ><:;>?A?@?A@>@@AA@5@>>@?>?@@?@??>>?7??????@??>???????@????>>>>?@>>>?>>?>?>>?=>>??>>??>>>?>?>>?>??>>>??????>>>>?>8>>>>>>>>?>?>?>>=??>>>>???>?????>@???=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:4:=7=>><5:*.5<=<-6<>?>99->=9<0>-9+:=: MC:Z:151M MD:Z:5T11A4A10G19A3A2T13T10A29T3 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:10 MQ:i:60 OQ:Z:#############################################################################################################AFF,F7?:???>>???>?>?>??????????????@?>>>=>>=>>=?>>=>>>=>?><>>=>>=>=?>:>>>>>>>?>=>>>>9>>>>==>>>==<===<=>=======<====>=>=>==<>>><<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKFFKKKKFA,7FKFKKKFKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:2:1204:14966:57688 99 3 17077315 60 151M = 17077405 241 GTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTGTTTATCCAGCGCATTGCAAGTTCTTTCTACAACTTTCTTTTCTATAGGGTTTTTT >>==@*==>?>>>>>>>>>>>>>?>>>?>9>>>>>>?>>>>>>>>>>?>>>>>>>>>+,9>?>>?>?>>?>>>>>>>>?>>>?>>>>>>?9>>>=)6>>@>?)>@?:???5('??@@????@??@A?@@)AA@AA@@?><:9? MC:Z:151M MD:Z:95T6A7G0T25A13 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:5 MQ:i:60 OQ:Z:AAFFF,FFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,,AKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKA,7FFKKK,FKKKKKK7,,AKKKKKKKKKKKKKKKKKKKKFKK,FKKKKKKKKKKKK UQ:i:66 AS:i:126 +HK35MCCXX160204:2:2204:6228:72016 147 3 17077316 60 151M = 17077024 -443 TCCTGGCCTCCCACATCATGCCTGCAGCGGTGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCGGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTC ##################?<8*=(*A@9;(.0=77.'.4.8?2>@@96:>?><<6,:=>5./9.2*?@>>'6?.7/@>=8?5;;(;1??->=<9>>>;<;>>?377>>>;;<>;5>;==9>8+==>4<5;>>;>>>+<7?>>10< MC:Z:151M MD:Z:9T20G34T85 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:3 MQ:i:60 OQ:Z:##################AA<,<,,FKFA,,7<<<,,,<,AF7FKFA<=6,;6>=<>==;>><>>219;=7/486:>:7>>;>=>3>;9;==:==>>>?9>?>?>>8,<=48??>==;>=>????3=-;:77=@:;8=-7=;8A@74A############################## MC:Z:151M MD:Z:134A13C2 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAFFAFFKFA,F======<========>==8>>=><>>>>>>>>>>>>><,:>>7==>?>>>>=>>=>>>1=>==;=<>;<9>=<2=;==>==??????<<99>=;?8;.>>>>?8???>@??>@84?:8@9@>@=@?)A=A?55>@AAA?@<#### MC:Z:151M MD:Z:132A18 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:<=??===<==<====(;=====8====;====>>>>>>>>>>>=>>><9>?>>>>=>>=>>>?>>>';=>;>>>>>=>><*248;>>?,3==????:?????>?????>???>?@>?;;?>@??*2@A@>>>@@-@1>=@.*+69= MC:Z:151M MD:Z:17C50T17T6T35T15T5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKK,>;==?@@?@?@?>????????6???>>???>?>?>?????>>>>>>>>>?>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>><=>==<=<===<=>=======<====>=>=>===<>>>>>=???>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FAKKKKKKKKFKAFKKKKKKKKAKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2122:16305:67076 147 3 17077323 60 151M = 17076863 -611 CTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTA ?:9=?>@@:?0*8-@@?;@?7;%>/>?>?>>>?>?4???:=>=>???>@???>:?==??=?>>=>>>:2?>=>:=>>=<=?>=>>>>>>;?:3>>>>78>>8:=>>>=>==>>=>?>==:===<====>=>=<;==<=====4>>7>?=:= MC:Z:53M1I97M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FFFAF=<=25>=<>>>8======8=8<16&==========1===<===>>=?>>>==>>=>>>?=><=>=>>?>=>=<>>=>=;>>>>>>>>>?>=>>>18>5=>>=>>>>==>0>=?@5??6>006190>@>=?@???>??9?@<;>@?>=### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFF<8??=;>>>>?>>>?>8==><<>?>>>>>>>>>>9=>>>8>>>>?><>?>>==?=>;>>>>>0;=?6'>>>;6=90:?9>>>;>>>>@>:(<>0=?>.59>1/>>6?@6?=2@???@=?>>>====8==<<0:<7.97.6=9====>:/29;:/.386<=>+7>?7=;>>>7>8.2;=>>2/9=><<=>?><=>4;.5>.::????.?*3/...@@?@@@>>?######## MC:Z:151M MD:Z:69T44T29T6 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKF,FF??@?@@@?:??=>>???>?>?>???????=>>>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>>==>>>=>=>=>==>=======<====>=>=>===<=====<===>>>?>???>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:#AKFKKAKKKKKFKKKFKKKKKKKKKKKKKKKKKFFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2119:14489:32144 83 3 17077332 60 151M = 17076973 -510 CATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCG ?;;=>?@@=@@;@??>>???>?>?>??????????????@?>>>=>>=>>=?>>=>>>=>?>>>>=>>=>=?>=>>>>>>>?>=>>>>9>>>>==>>>=>=>>><>?=======<====>=>=>===<=====<=====>?>?>>?>==8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1117:20182:10046 163 3 17077333 60 151M = 17077732 550 ATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGT ==>>=?>====8===;<=>==><==>>==>>>=>>>>>5?>>><=>>=>:>=>>>>>>>>;>=>>8>6>>/;>7>>???:>@>>=???:????9>?>?>?>>??><=>@07??@??>?A@>@@?>5?@=9=;6<33=??;1@@0;13< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKAKKKKKKAKKKKKKFKKKKKKKF7KKKKAFKKKFAKFKFKKKKKKAKKKK7F87==:@@>@@@A@@@@@@@@??@?????>???@???@??@?@??@????????@??>?>>>>?>??>>>?>>>>?>>>>?>9>>>=>>=>?>>>?>>>??>>>>?>==>=>>?>?=>?>>;>=====>>>>>??>?>>>>>>9>@A<>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:F>==>?=>>>=>>==>>>=>;>>>>>?>=>>>=>=>>>>>>>>>?>=>>>>9>>>>?>?????>???>?@>>?>???>????@?@?@?@@?@@@@@>@;@@>@=@>A@@?5<;<9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:=========8=09=4;,7%;;==>=====>>=>>>?>><<=;>>7>=>>>>>)=>>>9==>>?>=>=>>9>9>>>=>>>>>=>??>?@>??>>??>????@?@?@???>>????>??@@@AA@A@@@@@@:>;<@?@>;:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKAK7AF>>91@>>===6==<==>>;=>==:(>';9>=>>>5/==>@(7.(/8==>=>=>=><>:=?>>><=<2);<><><5;02)=:62:*2,-+,<5=;0><=2=888589+9>>??=?/ MC:Z:151M MD:Z:13G65C62G8 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:##################################AFKFA7:=7==>=>;>>)<>>><>>>>?>>>?>>9>.16(=8=8>(<>6;;>?++1&8'<69==?>;>>+95>>=9#8>>='<><):+=9+>=<9;<-;9=;2/+8>@<>>>68?6+995<))9=??####################### MC:Z:4S147M MD:Z:40A16A1T22T47T7G4G0G6 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:8 MQ:i:60 OQ:Z:=?>>>>>>=======<======>====<==<===>=====>>=?>=>><>>=>>;>>>>>>>>>?>=>>>>8>>>>>=>>>>>=>>>=>?=>>=>>>=>>>><>?>@?????????>??????@?@??????:?A@@@??@@:>;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:,AFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF@?A@A@A?A@>@@@@@@??@@?@@@?@@?@@?A??>???>?@????>??>?>@?>???????@?>????:>?>>==>>>=>=>>>=>?>>>>>>>=>>>>?>?>?>>>=>>>>>=>===>>>=>>==>==8<>=<==<=>>??;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:KKFKKKKKKKKKFKKFFKKKFKKKKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1124:12591:16692 99 3 17077349 60 151M = 17077384 186 CCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGAAGATGTGGTA ><>>>?>>>>>>>>>>>>>>=>7>>>>>==>=?>>?>>;>=>>>?>=>>;>>=>>=>>>>?>>;>?>>>>=>9>>>>=>>>>>>>>>>>??>>>>?>98?>>?@?@?@9?>?<6999<<0=:=.6,;2=4>,:@@=@?6<>>=;:9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKK<>@@?@?B??AAA>@?@<8@@@?@@@@@@@@@@@@@@@A?@?:???>???????>>>>>>?>>>>>>=>>>>>?>?>??>>>>>>>>>>>>==>?>?>>>>==8=>?>>=>=?>>>??=:>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:FFFKFF>??>>>>=====<======>====<==<===>==========<==7==<=9=>>>>>>>>>?>=>>=>9>>>>==>>>>>=>>>=>?=>>=>>>=>>>>?>?>?>>>:>????>??????=?@/?=;@?:/.8>@?>@:?@@?><;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKK7FFAF4;<@7<=2*@<998>/(??@?@<.5@9>=@@='@@@=>@@?@@???@???;@????@?:?=??>@???@?>?=?>>>>?>>=?>>>?>>>??>>>>:>>=:>>>>>??>?>>>>>>9>??>>>>>?>>>>>>>@@<=:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:<7A,<7AA<=<;?<>2=1:>*'=;5/*2*=><=6-0>>4=5/>===>>7>=8>><=?>==:'':=4><<<)?>?=;;=>6>>=6*5====>=>======8:;;:=;:(=<==<=7=<>=>?>?>?> MC:Z:151M MD:Z:2G4A15C22T4C35T7A36A18 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:8 MQ:i:60 OQ:Z:##############################AFKKFF?@@@>@?@??@@===@??>???>?@????>??=?>>>=>>>>>>>?>=>>>>9>>>>==>>>=>=>>>=>?>>>>>>>=>>>>?>?>?>>>=>>>>>=======>=>======8<>=<==<==<==<==<>=<==<>>>>>??;?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKFF(7:3773=4,5<=%,;=9+?9&6(5>0><,5<957<8=8:999>,577=>5(9=):==>=@?+5<>;-<3?>)2?58;;->>;81=-(/,+:377*98A?-)=-,+9(2->?8;;..9?@3(5##################### MC:Z:151M MD:Z:20T40A17T14T13A19T8 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:6 MQ:i:60 OQ:Z:A,<<>??@>===<=;<===>>==>===>?=<=>>>>=>>?>>>>>>>>>?>=>>>>9>>>>>=>>>>>=>>>=>?=?>>???>????@?@???>>>?????>??????@>@?@@=@@69@@?@@?@@@@??@@@A@@<@AAAAAAA@??;79? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFKKKKKKKKKKKKKAFKFF=>>>>>>>>==============<>===>>?>?>==>>>>>>>?>>>>>?>>>>=>>>>>>==>=>?>>>>>??>>>>>>?>>>:<>>>>>>>>>>?>??@@????@??;=???>=???>??????@?@@AA@@4=@?<=<:5= MC:Z:151M MD:Z:53G97 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKFKFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKAFFKKFAFKKFFFFKKKKKKKKKKK7AFA:>,????=2???>:?>.@:@>>>>??=9+?@>>>>>>5;;<>>><%>>>>>>??>>>=>??>>>>>>?>>>>>>9:>><=>>=>569?=:=<;7+>>>?>>>>>==>>>?>>>>>>>??>>?>?>>.>??>>=/ MC:Z:151M MD:Z:11A39G10T88 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:3 MQ:i:60 OQ:Z:AF<,77A7A77(KFKFF8A>77:<@@@=?=='.916-7=>=&8.2,=?):6>>;>??>>,;,=::>1><8>>>>>;>>?==:=8;<7>>>9=>>>>=<>>>?>>>=>97>?>>?>>>>>>>?=?=@< MC:Z:151M MD:Z:16A21T9T1G4T20T74 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:6 MQ:i:60 OQ:Z:#A,A,<,7<77FA,,,,F<<<,7<??9@>(616<70=;/??@?=?=??????>9????>8>=09<<=;??>9/=<7';(>>;>>>9.>?>;=8?>5<6,>>:>>>>=>>>>>=>?=>>>>>>=?>>?=?>>>>>>>???;<=< MC:Z:151M MD:Z:11A10A24G103 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:####FAFAFAA,F<<,7<,A,F;=?>==>===<=<>===<==<==>==>?=>>>>>>>>>=>>>>>>>?>>>>>>>>>>>=>>=>?>>>===?>>>>>=>>>?>=>????>???>@>?>?@>???@???>???=>@@@@@@@@>>@@@?@A??@??:>:AA:A@>=8:=# MC:Z:151M MD:Z:46G104 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKFKKKKKKKKK;<=>=>=><====<==<=<====><=========<=====>>>>>>>>>>>>>><>>=>?>>>>=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>8=<>>?>>>=>>??>??????@?>????>?@>???@????@@?@?@@<><;;= MC:Z:151M MD:Z:43G107 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1117:27235:56299 1123 4 57194286 60 151M = 57194316 181 CCCACCCACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATA >;<=>=>=><====<==<=<====><=========<=====>>>>>>>>>>>>>>=>>=>?>>>>=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>?=>>>?>>>=>>??>??????@?>????>?@>???@????@@?@/>@?><;;9 MC:Z:151M MD:Z:43G107 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AKFKKKKA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1117:21704:36979 163 4 57194292 60 151M = 57194387 246 CACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGC =;:=<=========<=>>>>>>?>>>>>>>>>>>=>>=>?>>>6=>?>>>>>=>>>>>=>>>>>=>>>>?=>=>@>???@???>????>??????@?>????>?@>??@A@@@@@@?@@@@?A?@@A@=<88: MC:Z:151M MD:Z:37G113 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2217:7953:49654 83 4 57194293 60 151M = 57193393 -1051 ACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCT ><<=1;@@??@@?@>???<0>5???=>??>=<<;???>@??>>=>=>>=>=>>=>?>>>>>>?>=7>>=>>>>==>>>>>>>>>>?>>=>?<>>>?>>==>>>><>>=<==>=<====<=>===<>====<=<====<==>>?>=?=?=?> MC:Z:151M MD:Z:36G114 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:7F3??>9/837-2>@<>@8@6@@:0@?????9;>?>?7;5(-7;;->??>=>>=*:+??=>>?>?=='=>?>>>>=>>>>>>>>;>?>=/=+:>==,>?;5>=>>>>>>>7>=>>7>?7>>?0><=- MC:Z:151M MD:Z:25G9G115 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:2 MQ:i:60 OQ:Z:##################FA7AA<7,<77,7FFFAFAF7FFA7KKKKFFA?8?@=@9@@@@@@?=????????@@?????@@??????@??>??????????>?@?@?@@??>??>>>>?>>>=>>>>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>???>??>>?@=<<< MC:Z:151M MD:Z:6A21G122 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:2 MQ:i:60 OQ:Z:########FFKKKKKFFKA<<@7@@@??@;9,,<@?@@@=@,7@:???????>:?>?@??>?>?>99???>?????>???>>?>+>>>=>=>=>>>>?>>>=<>>>>>>>>>>?>=>>>>=>?>>;>?>>>>>>>>>?>>><>>?><>?>>>?>>>@>==>< MC:Z:151M MD:Z:27G123 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:A<,<,7A7FFA7FKKAAKA<,,AKKKKKFF,7KAKKKKKKKF87.@1@@>?==91=@:>-;<>?>?=?=>5>9@?>???>?=?<><=,;>>>><>>;=>=><==4;?>>==>>>;=<=>=>>?>=>><>=>;68&=?>=>>=>=====;=<==>=<=>===;==<=====<>>?>=>= MC:Z:151M MD:Z:2G17G86A43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:#####AKKFF<7,A,KKFFAFA7><>>=>=8;=9<>=.====2,<=96=6;==><=>9=>=>>>>;>>>>>=>=>>>==>=>=1<8>:1>:9;<=00=<388<<>>>>,>0(=><=>;8=:/,.=1);8=..)(..(8.=?:???=>@@@@4:@/9?=9######### MC:Z:151M MD:Z:15G134T0 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:AAA,57<;89-.<=??@AABAA@;@@@@@@@@@@@AA@@@@?A=@?@@@?@;=8@;??????>??@?????????>??;>?>>>??>>?>?>>>>>>>>>>>>>>>>=>>???>??>>>?>>>?>>>>>>>>?;?9=< MC:Z:151M MD:Z:14G136 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:KKKFA<<,,AAAAFKKKKKFAKKKKKKKKFKKKKKKKKFKAKFKKKFKAKFKKKKKFFKKFFFFAF7KAKKKFFKFKKKKKKKKKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFF>??<:4//.>>=>>>>=:->>>8?><=>>><>>;>=>><>>>;>=>>><<6>=>>><>?>>>>>:-<>===>>8).>?8;=<6 MC:Z:151M MD:Z:11T2G15T10A103A3 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:#######################AAAKAA<,,,<<,,,7@?@@?@@@@??>??>?@??????@?????>????>>???????>>>?>>=>?>>>>?>>==>>>>=>>>=>>?>=>>>>=>?>>>=?>>>>=>=>>>>=>===>=<=>===>========<=======>?>?<>= MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKKF@>?@@A@?@?>@@@@??>?>?>?@??????@?????>????>>???????>>>?>>=>?>>>>?>>==>>>>=>>>=>>?>=>>>>=>?<>==?>>>>=>=>>>>=>===>=<=>===>========<=======>?>?<>= MC:Z:151M MD:Z:13G137 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KFKKKF>@@???@=8>@**(*9@@>:2<8>@:?=??>=9;7;>?=*;>?????=?=<)?>>==0<>>>8>;===::))>=89>;7>=>=9<8=?>>=5?>>;;:)=7==75>=>7>=<<40==:==;=======>:*><:>= MC:Z:151M MD:Z:12G138 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:###F<<=?;@AA@@?@@@=@@?@@@@@@?=@@>?::@?>>?<>????>>>>>>>>>>=>>=>>>;0>>>>>>?>>>>>>>>>>>>>=>=>=<>>>>>?>>>=>>>=>===>>>>>>>?><:; MC:Z:151M MD:Z:12G138 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AKKF<,FF@AAAAAAB?@AAAA@@@@@@?@@>??@@@@@A@@@@?>?????>??????????@>>>?@????@???>>?>>>>>>>>>?>=>>>>>>?>>>>?>>>>>>>>>>>>>=>>>=<=?=>>?>>>>=>>>=>===>>>>>=??==<; MC:Z:151M MD:Z:11G139 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:FFKF<?>>:>>?>>>>=>>>>>><,>=?>>>><4?5,,;;>>?>>/=>77>>>>>>>>?>????????<8>?1=;?;<=*;>>9;73<:=<;?>??>############################################ MC:Z:5S146M MD:Z:10G117A12A9 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:<<=>>>>>>>>=>===========<==<=>====<=>=====<>>=>>=>>>>>=>>>>?=>=>?=>>>;>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>??>?>??@?>?@???@>???????>?>??@@@?@??==;;> MC:Z:151M MD:Z:10G140 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2112:23967:16428 1123 4 57194321 60 151M = 57194450 280 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAAT ><=<=?>>>>>?===========<==<=>====<=>=====<==>>==>>>>>=>>>>?=>=>?=>>>?>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>>>>?>??@?>?@???@????????>?>?>?@;@@>@??>=:;? MC:Z:151M MD:Z:8G130A11 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:24403:16234 99 4 57194321 60 151M = 57194450 280 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAAT ><=<=?>>>>>?===========<==<=>====<=>=====<==>>==>>>>>=>>>>?=>=>?=>>>?>>>=>>>>=>>>>>>?>=>>>>=>?=>>>?>>>>>>=>>>>>?>??@?>?@???@????????>?>?>?@;@@>@??>=:;? MC:Z:151M MD:Z:8G130A11 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:84 AS:i:141 +HK3T5CCXX160204:2:2103:16863:31336 99 4 57194328 60 151M = 57194901 724 TTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGA >>=>8?>>>>>>>>>>>>>>??>>>>>??>>>>>>?>>>>>>>>>>>>>>>?>?>??>>>>?>>>>?>>>>>>>>>>?>>>?>>>??=>?>?>>>?>>>?=@?>????@??@@@?@;???????@???????@@??A@@A@@@@@?=79## MC:Z:151M MD:Z:1G149 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFF@<).();7>56-6=5)..6?@:6?7.(5-)998,.:,-9.95-<8>5:.'.9.<*=69>'7:;6./(-->8(588&++6=1&>1+9=>=>78,5,'9+./=++(,<7===(=,8;;>9>=48>><;)>>>>>?>?>@;>> MC:Z:136M15S MD:Z:5G6G0A1T9A0A13A34T6T2A20T10G11A21 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:13 MQ:i:60 OQ:Z:######FFKFAF<,,,,<7A<<,1/*(=>:97>8*2;==:*2=;-8?>=8==2:'&(48=55/(.*53<>>;:>:<1:*;/=7;=968(<;>:;;'>7=;5'<18).=>=?7<=?=8+8;8=><==1<=<-/)=<=<<=<5;*=0><=>>;9:?):>@> MD:Z:46A1T38A5A30C26 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:5 OQ:Z:####A7>>?@?>>>>>>??>>>>>???>>>>>?>>>>>>>???>>>>>?>?>??>>>>?>>>>?>>>>?>>>>>?>>>?>>>??>>?>??>>>>>>@?@??????@??@@@?@@@@@@??@@?@?????:???@?@A@@A@@@@A@@@A@@?<:9? MC:Z:151M MD:Z:124A26 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HK3T5CCXX160204:3:2223:10531:44802 147 4 57194337 60 151M = 57193980 -508 TTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGG ><9<>?<:>>B@A?3<99?=@@@@@A>@>@@:;@=@=???@?=@?@@>???@????@??????????@???@????@?=@?@>??>>>>>>?>>>>>>?>>???>?>=>>?>>>?>>>>>>>>>>>?>>?>>>>>>>?>>>?>?>???;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:FAF??>>?=>=><=?=====<=====<===>>=>>>>?=>=>?=>>>?>>>=?>=>=>>>>>>?>8>>>>=>?=?>?@??????>????<>>??@?>?@?8;>?>??????>?>@>:@@@?;@7;A@?@@@@@@?A@??B?A/5>?=>;-= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKFKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKAFKKKKFKKKKA7AKAFKKKKKKKKKKAKFKAAA<>>????>>>>>??>>>>>>?>>>>>>>>>>>>>>>?>?>??>>>>?>>>>?>>>>>>>>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>?>@?@@???@???@???????:???@??@?????@@A@@@A@A@@@@@?><98> MC:Z:151M MD:Z:118A32 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1219:20466:25552 163 4 57194345 60 151M = 57194474 280 TTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAA 9>==<=>=====<=====<=====<====?=>=>?=>>>?>>>=>>>>=>>>>>>7>=>>>>=>?=>>>?=>>>>><>>>>=>=>>??>?@???@????????>?>?>09=?=>?>???9?@@@@@@@?@@8?@@?@@?@@=<98> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<?@@@AA@@@@@@A@@@????????????@?@?@@????@????@???????>>>?>>>?>>>??>>?>?>>>>>>>>>?>>>>>>?>>???>??>>>?>>>?>>>>>>>9>>>?>>?>==>>>>?>>>?>?>>>>>>>>>?>>=>> MC:Z:151M MD:Z:115A35 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HTL2KCCXX160412:5:1219:7405:39423 99 4 57194347 60 151M = 57194615 419 CTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGG ?@>???>>>?>=====================>====?=>==>>>=======>>>>>>?>>>>>>>>?>>=>?>>>>>>=>>>>=>>>>?>>>?>>>?<>>>>>>>=?????????>?????>????????>??=>?@@@@?@@@@?A@@@@@@@A@@@@@@?????????@?@?@@????@????@?????>????@>>>?>>>??>>?>?>>>>>>>>>?>>>>>=?>=???>??>>>?>>>?>>>====9>>>?>=?>>>>===>=>>?>?>>>>>>>>>>>>?@@<<> MC:Z:151M MD:Z:112A38 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:2123:5325:20067 83 4 57194357 60 151M = 57194062 -446 ATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGG ?::<=?@@@?@@@@@@@?@??@>?>?@????@>?>>????>???>>>?>=>>>>=>?>>>=?>>>>=>=>>>>=>=>>?>=>?>>>?>>>>>>>>=>>>;>>9=>=><===<======<=<=<>======<=====>==>=>>>>???>:> MC:Z:151M MD:Z:103A47 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AKFKKKKKKKFKKKFKKKFKKFFKKFKKKKKKAFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>??>>>>>===>=>>>=?>>>>?>=>=>==>>>>>>=>>>>>>?>>>>>>>>?>>>>?=>>>>>=>>>>=?>??@???@???@???????????????:?>????@@?@@@@?@???@>A@@A@@@?AAAA@?AA@AAA1A@:<86? MC:Z:151M MD:Z:102A48 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKFAKKKKKKKKKKKAFFKKKAKKKFKKFKFKKKKKKKF=======;===>><><=>=>==>>>>=>>5==>>>>>>>>=>>>>=>>=>*=?>.>*<>08<>*0>=>>)=(=.6=>>/;/*????0/5>??>>>>>>===>=>?>=>>?>>>>>>====>=>=>>>>>>?>>>>>>>>?>>>>?>>>>>>=>>>>=>>>??????:?????????@@@@@@@@@+.@@?@@=@AA?2A>AAA?@AAAAAA@@>;86= MC:Z:151M MD:Z:99A51 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKFKKKKFF,,AFAAKAFFF<7;<>>>>?<=<=><===>===<====<======>=<=====>>=>>>?>>>>>>=>>>>=>=>>?>=>?>>>?>>>>>>>>=>=>=>74===>=>>>:>>>>>>>>>??@????>?**>1=>=???>?>=>><@@6;8::>?+7=;> MC:Z:151M MD:Z:92A58 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAAAKKKKFFAKKKKKKKKKKKKKKKKFK,,A7FKFKKKKKKFAAAFK7A8:6+;/>8<9+*),-/51&'/.&<;456=>8=8=>7'>;;?><;6//>>>>>=5;:><>>75))46=;)==>5>8<:)4<<>==;=#=;==<9.=<;;<==<=357;:6<= MC:Z:151M MD:Z:20T3T9T3T2T3T7T38A24G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:9 MQ:i:60 OQ:Z:##################################A<7,AA7A<,A7FAA<,,,,,,7,,,,,,FF<<7AKAF7KF7,KFAKKFAA,,KKKKKF<>??@=>=>?;===>===<====<<=====>=<====<=0&;<05<>>>>>=>>>>=>=9=?>=>?>>>?<>>>=>>>=>=>=*;>>>=>=>>>=>>>>>>>>7>=?>>????>??><>????>?>???>?>?@@<8=@@?>=;:A MC:Z:151M MD:Z:84C66 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKFKKKKKKKKKKFKFFKKKKKKKKKFKKKK7,FA,>8=<2/9+???>???.?28>7=?1:3?@=>=9-=,)<=<6>>><=>=>><==><;=;8>>>>:.0>==<>>>>>>:<4<>;><=>==:;===;8=<=;<====28<=<==<<=928=====>=7<64:??>@> MC:Z:151M MD:Z:7T36T76A29 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:###########AA7F<77<,KKKKKFK7K7AF@::07??=>*.:(:>:>>?>6>9@>?>3=>=>>>>=><<=?>=>>==>?<<.;>>>>>:>>/<<>=:><=<>>>>>=>=>;>==965;<>==>=>===<==>><<=;==><==>9>>.0<>>>=??5?= MC:Z:151M MD:Z:148C2 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:####KF:?=<8=>??:7?????>??>>???>??>>>?>>>?>>>>>>>>><>?>>?>>>>>>>?>>>?>?>>>>>>>>>>>>>>?>>>>>>>>?>>>>>>>>>>?>>>>>>>>>>??@;?> MC:Z:151M MD:Z:144C6 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:#FFAKAAA<7FAFFA:>>>?=>><>>>>=>?>>>?>>>??>>>>?>>>>>>=>>>>=>>>>?>>??>>??>>>>>>>>=>>>?>>9=?>@??@?>????????>?=@??????>?????????>??@<@@A?@@?@>=@@@@@@@@@?@A=>@@=;96> MC:Z:151M MD:Z:77A64C8 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKF>==?>+$-?@><=>?A@?=><>??@???>@??==7=>????>=>??@?>>8???@>>>>>>>>=><>>>>=>>=>=><>=>>>>>>=>=>=?>>9>7>=>>=>>>>>>=>>>>=<=======#=====<=======<=>==?>>:>= MC:Z:151M MD:Z:7T118C13C10 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:<:<>?@@@@=@@=???@????????@??@?@??????>>>@??????@??>??>>?>>>?>>>?>>=>;>>>>>>>>>>>>>>>>>?>>>?>?>>>>>>>>>>>>>>?>>>>>>>>>>=>>=>>======>>>>>>>>>??>>>??>>?= MC:Z:151M MD:Z:138C12 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:<@@?@?@@?>?>@?>????>?@???>@????>?>??>>=>=>>?>=>?>>>?>>>>>>>>=>>>>>>9=>=>=>>>=>>>>>>=>=>=?>>>>>>=>>==>>===<=====<==========<==<=======<>?>=>>?>?><> MC:Z:151M MD:Z:73A64C12 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:FKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HTL2KCCXX160412:5:2110:4371:23935 83 4 57194398 60 151M = 57194361 -188 AATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCA ?:;<>@@@?@@@@?<@???=@?????????????>??@?>?>?=>?>><>>>>>>>>>>>>9>>=>=>>>>>>>>>>>>>>>?>>>>>>>>>=>>>>>>>=====<>>===;=>===============>=====<====>>>>>>>>==? MC:Z:151M MD:Z:62A64C23 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:KKKKKFFKKKKKKKAFKKKFKKKKKKKKKKKKKKKKKKKKKFKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HK3T5CCXX160204:4:2117:5193:44345 163 4 57194399 60 118M33S = 57194676 401 ATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCGGTTCTCCTGAATGCCGTGAGTGATTGGGAATCACAAGGAACATTCCGGCACGCAACTCTGTCCATGTGAGTTGTCAGGATTCTTCGCCCC ,=<=???>>><>>>??;>?>?>>>8:<><>?=<<=>>?6==>43?>>;,=>>>?>>6>;>,1659?((.0;,,4=)0-(959)8-898=?9=-7################################################# MC:Z:27S124M MD:Z:60C0A13A6A23T5C5 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:6 MQ:i:60 OQ:Z:,AFFFKKKKKAFFKKKFKKKKKKKAAFFAFKFAAFKFK7FAF<=))>@>?@<7='A?=78/.)?>@>?=(>????7??@=>>=80>75>>?>>?>>>>>>>?>><<>?=>>>>8=>>>>>>>?>>>>>>>>?>>>>>>>>>>?>>>>>=>>>>>??>>>>>>>>>?>>>>>?>==>> MC:Z:143M8S MD:Z:23G37A64C24 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:7A,,77A<,,AFAFFA<<,KFA777,,AF>?>>>>=?>>>>>>>>>==>>>>>?>>?=>>?=>>>>>>>>=>>>>>>9>>>?>>?>>>>>>>>>???>@????????????????@?9?=???=??@?::9=;?@@@<@@>?@@@@@=0<<.?@@@?@@;A<<88# MC:Z:151M MD:Z:55A64C30 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKAFKKKAKFKKKFKKKK:7925-7:5.)@?>59:09=&.2<1>6?>>8(,>;?>=+,887;=78=1,1=4;6?>>>=>>9<>><5?>>>>>>;>>?;>>>>>>>=6=<9>???8:, MC:Z:102M49S MD:Z:6A2G34G72C33 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:4 MQ:i:60 OQ:Z:############A7A,7=;>>9?=7?;:.(?>=5;??@??>>>>=>=<>5=>>>>>>=>=>=?>=7>5>=>==>>><>>=>>>>>=>>>>><>>>>>=>==88====<=>=<===<===<=<===<======9><=>>??=7;> MC:Z:151M MD:Z:2T111C36 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:####FAFAAAAFFAFA7KF>@>>>>>>>>>?<>>>=>?>>???>??>>>?>>>?>>>>>>>9>>>?>>?>>>>=?>?=??@=@?>????:??@;@AA@>@@?@@@@).-@@<>@@@AAAB*??B@<;=996< MC:Z:151M MD:Z:46A64C39 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:AA?==>?>>>>=>===<=9;=>=<=8;==>========<=<=<;=9===>=>>>=>>>>>>>>=>>?>>>>==*<>=>=>>>>=>=>>>=>>>>>=4<>>=>>>>>>>1=>=?@?????>??=:???@@@?@@@><;;? MC:Z:36S37M78S MD:Z:109C41 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKAFKKKKKAAKKKKKKKKKKKKKKKKFKAFKKKKKKKKKKKKKKKKKKKKKKKKFF,FKFKKKKKKKKKKKKKKKKKKK@<>??>>>=>>==<=<==>=<=>===>========<=<=<===>><>=>>>=>>>>>>>>=>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>>>>>>>>>>>?@?????>???>?????>????>?>??>@@@@?@A?=;;;? MC:Z:151M MD:Z:108C42 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKF UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2118:25347:62593 83 4 57194419 60 151M = 57194155 -415 AATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAA A<;==??@?@@?@>??@>*==???@???>????>???????>==>=>>>=>><>>>=>=>=?>>>>>>=>>=>>>>>>=>>>>><>>>>>>>>>>>>>=>>>>>=>==>=<===<===<=<===<====<=<==<====>=?>>>???=@> MC:Z:151M MD:Z:106C44 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z::=:(.@7.:*/)?44.8;-)>;5=7-=::>:<>>?8?>?<<=9>:=<3./0/(+<=;92>6-(,>==>:=3%><7<<7>:>?>=<=<==<>=<=>>><=92==;<==<=>===<><82=4>=>29= MC:Z:151M MD:Z:10A2A1A23A37A26C46 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:6 MQ:i:60 OQ:Z:#################A7,A,AF<7AA,,A<,7,,,FA<,7A,,F<??==<==>=<=>===><=======<=<=<=>>>>=>=>===>>>>>>>==>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>=????8?>???@?=???>???>????<>????>??@@?@@@@@@A@?@A>@?@@><87: MC:Z:151M MD:Z:100C50 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKFKKKKKFKKKKKKKKKKKK=>?>>=>=<=>===>========<=<=<====>=>=>>>=>>>>>>>>=>>?>>>>>>=>>=>=>>>>=>=>>>=>>>>>=>>>>=>>>>????????@?????>???>?????>????>?>???@@@@@@A@?@@@@@@@@@@=<:7? MC:Z:151M MD:Z:97C53 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HJYFJCCXX160204:5:1202:4493:72420 83 4 57194430 60 151M = 57194283 -298 GATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCAT >99<>@??@A@@@A@??@???@>??????:>?>?>??>==????>=>=>=?>>>>>>=>>=>>>>>>=>>>>>=>>>>>>>>>>>>>=>>>>>>>=>?=<=>===>><>==>=<======<==<=====<>=====>=>>>>>>>??>=?> MC:Z:151M MD:Z:30A64C55 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:2 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKAKFKKKFFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HK35NCCXX160204:1:1219:25905:68306 163 4 57194432 60 151M = 57194547 266 TCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCGCTCTGAAGCTGTAACCCAGAAGGCACATCCATTC -;<>>;9>;>>?7;;>>7>>==>>;;446>+8;<>?>>;>>>;<=>=>4=;+8>==;;>8>>>>>4>>>;+9=?=)8:;7>>-;;1+=??=@=@>><@/:*?AAA@A@@@@A@@@A@?????=????@??@>??????@>??@?@?>???>?>>>>>>>?>>>>>>>>?>>=>>>>>>>?>>>>>>>>>>>??>>>>>>>>>?>>>>>>>>>>?>?>>>?>?>>?>>>>>?>>?>>>>>>>?>?>>> MC:Z:151M MD:Z:93C57 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:6>???>>>>;7<1>>=?>>?>=>>>=>?:/98>?->>/7>>>>>>>>>=>><;>>>>?=7361))->?@===?96??=?>@@->>>1??::5>??<2***;<@?A>>@;@A;<=7983>?9/))7.5893+/?-49(>@AA@####### MC:Z:151M MD:Z:14A64C70A0 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:3 MQ:i:60 OQ:Z:?>>>>>9>>>?>>?>>?>>>>?>>>?>??>>>>>>?>>>>>??>>?>>>>>?>>>>>>>>?>?>>>>>>>>>>>??>>>>>>>>????????????@?@=?@@>@?>?@????5??@??????@@@@@?@@@@@@@;@?<17;6 MC:Z:151M MD:Z:13A64C72 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:??=>>>>>=8=>=>>>=>=>>>>>=>=<==?>>>>>>=>>>>>>>>>=>>>>>>>>>>>>>>>>>>>>>>?>?????@?>???????>?>?????????????@?@@@@@A@@@@?@??A@@@@@@@AAAA@?AAAAAAAA@>586< MC:Z:151M MD:Z:13A64C72 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKFKKKFKKF UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:23967:16428 1171 4 57194450 60 151M = 57194321 -280 AAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGT ?89:>@@@@;@@?@?@@@?@?@@@@>?>?>@??????>??>??????>?==??=?????>>>>><>>=>>>>>>>=>?>=>>>=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>><========<====<========>==8>?>?;8= MC:Z:151M MD:Z:10A64C75 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:KKA7FFKKKKKKFKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2112:24403:16234 147 4 57194450 60 151M = 57194321 -280 AAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGT ?89=@@@@@:@?5@?@@@?@@@@@@>?>?>@??????>??>??????>????=>?????>>>>>>>>=>>>>>>>=>?>=>><=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>><========<====<========>==8>?>?;8= MC:Z:151M MD:Z:10A64C75 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:KKKFAFKKKFKF7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:2107:10115:12613 99 4 57194460 60 151M = 57194635 326 GTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAG >@>>?>>>>=>>===<==<==>======<==<=<;<==<=<====>=>>>=>>>>=>>>>>736=><>;><=>>=>>>=>>>>>=><>>=;<=>=:>=>>>?>=>>>>=>>>??>??>????>?>=?????@>?:??>@@?@;9@?==;?>>>>>?>>>?:>>>>>>>>>>>>>>>?>>>>>>>>?>>>>/33>>>?>>>>>>>>>>>@??;???????=<>????????@?@???@>@??@=?==?@?<:?6@'=??2<@@@@@@@@@@>>9*2<@(B=?<@/<-=/=><#### MC:Z:151M MD:Z:61C43A41T3 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKAFKKKKKKKFKKKKKKKKKKKKKKKKKKKK7<>??>8>>>>>=>=>======<=======>=<>:>>>>?>=>>>>;<>>?>>>><;=>9>>?>>>>>88;=<>>>6?=)8<>;?>;<>>>=>9==8->>???????<-;),7.;,9: MC:Z:151M MD:Z:60C16T57T0G14 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKFKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKFAKKKKKKKFFFKAKKKKKKKKA7AFAKKK>>?>?>>>>>>>>>>>>>>?>>>>>>>>?>>>>>>>>>>?>:>=<<>>>>>??>>>>?>>??@????9=???;@?@=?>@?@??@?7?>=;@==>;,,=<585;@@?8@9?9AA:/<=?:=9>>>>;>>1<82==&<>>>>>>==>>>>==07>5<4=>>=(<=398<;4:>;5=>,>5:,4,=:;??<6;@?@=?=:<@??>7;:?8>>=>9=8@@@;;'*1>95A?6?2..<4/>===4.*8>355: MC:Z:151M MD:Z:55C95 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:?@?@?B@@?<;@?@@?@@@@?>>?????>??????????>??>??=???<>?@?=>>>=>>>=>=>>>=>>=:;><>>=>>>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>==;>==8==;==<==<==<==>=<=<=>?=>=>= MC:Z:151M MD:Z:55C95 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KFAFKKKKKKKKFFAAKKKKKKKFKKFKFAKKKKKKKKKKKKKKFKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKFAAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKFKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:4:1220:10998:62945 147 4 57194472 60 151M = 57194201 -422 GCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTG 868:>?B?AAAAAAA@@@@@@@@A><@/@@??@@@?@????@???>???????>?@?>???>???>?>???>???<>>>>>=>?>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>>>>?>>8=====<==<==<==?=<><>=>>>>><0= MC:Z:151M MD:Z:53C97 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:>?>>>?>=====<==<=<====<=<===<=====<====<=====>>>>>>>?>>>>>=>>>=>>>>>=>>>>=>=>>=>>>>>>?>=>>>>=>>>>>=>>=>>>>=?>??????@>?:??>?????>??>??@@@@@@@@@?><;:? MC:Z:151M MD:Z:52C98 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:1219:20466:25552 83 4 57194474 60 151M = 57194345 -280 AGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTT ?:;<>>A@=9@@@???>???>??>?>???>???????????>>=>>>>>>>=>?>=>>>=>>>=>=>>>=>>>>>>=>>=>>>>>=?>>>>>>=>>>>>>>>=>=>><========>==8==<==<==<==<==>=<=<>>>>>>??=;=> MC:Z:151M MD:Z:51C99 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKKF??>??==??>=69=?=<><==9??;<>>>>>>?>>>>>>>>>?>>>>>>>>>=>=<;>>?>>>>?>:><8?>>?>>>>>><>>>>>>>>>>==7><>9<5;=>=<=>>>=>>??=>>>>>>>>>??<>?; MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:KKFFF=>?>@>>>>>><=><======<=<===<=====<====<====>>>>>>>>?>>>>>=>>>=>>>>>=>>>>=>=>>=>>>>>>?>=>>>>=>>>>>=>>=>>>>>?>??????@>?:??>?????>??>??@@@@@@@@@@@@?><;;? MC:Z:151M MD:Z:49C101 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HK35NCCXX160204:1:2217:26332:34764 83 4 57194477 60 151M = 57194383 -245 GAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATT >;:=>?@@@@@@@@@@??@???????>??????????????????>>>>>??>>>>=>>>>?>>>>=>>>>>>=>>>>?>>>>?>>>>>?>>?>>>>>>=>>>>=>>>=>>>>?<>9==>========<==>>==>>>>>>>>=>???>?? MC:Z:151M MD:Z:48C102 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:FKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:5:1220:16934:43800 163 4 57194486 60 151M = 57194723 388 GGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACGCTGAAGCTGTCACCCAGCAGGCACCTCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCC =;=??>>==>=>6><=>=<====,:<>===>>>>>2;>=>>>?>>>>><>=>=>=9>>=(7;>=$2>8<99>=>>0<=>>>>7>9>>>>%<=???>9-6??;??==>?:??>?4=?==9;=;;@9=>5>1*??=AA@@@>?<76? MC:Z:151M MD:Z:39C24T10A6A6A61 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:5 MQ:i:60 OQ:Z:AAAFFKKKKKKK7FKKKKKKKKK,FFKKKKKKKKK?>?=>>>=<=<===<=====<====<============>=====<>>>=>>>>>=>>>>=>=>>==>>>>>?>=<>>>=>>>>>=>>=>>>>=>=>>>>>>?=>9>>;>????>??>???*;>A@@?@@@??;9:# MC:Z:151M MD:Z:38C112 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKFFKKKKKKKKKKF,==<=<===<=====<==#=<==6==)5+;=>>?>>/<>=>>==>/=><=6>;>=><=><>>>>;/6)&<<>>=>>><<=>>=(86/=<>?>8?<>@><:??'??>?5;??>:?@?8>???@@@:>@-@>8@@3+3+@;536=:9 MC:Z:151M MD:Z:0A23A7C3C114 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:#AAFFKKKKKKKKKKKAKKKKKKK#KKFK7FK,A7AFKKKKK,AKKKKFKK,FKFKAKFKKKFFKFKKKKA,A,,FFKKKKKKFFKKKK,A7,FFKKF7KAFKKFKKK,AFFK7AFFFAAKK7FAKFKKKAFA,A<?>>=?>>>>>>?>>>>>>>=>=>>>>=====>>>?>>>>>>>>>>=>>>>>>>>>>?>?>>=>>?>>?>>>>>>>>>>>>>>>>>>>>>;;>>>>>>?>>9???@??=?=,8?>?@???????????@:5=@??@@@@<@???@?>>:;= MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKFKF,>?<=>?79*0*<;=<;===>>3662=:;<,><3<>><;<;96*:$<<>=?;=??>?>>,;'9<-;:=97>.8>.8$-8)9.8=9)4>2-7<3%80#68)%.-26=>@@18>>%)%1&&0).-,>746>=@A@991*#/.>>95<7 MC:Z:2S149M MD:Z:27T0C1T19C30C2T5T2T7T4A1T5T27C8 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:13 MQ:i:60 OQ:Z:AAFFF><<>=8);<><==>>>>=>=>:9<>><=>599>7:+);>>>>=*>=>>;>=<;;>>===8>?:?<>>>??>(19;2<=?>?>?=6;>9A?>@@),;;;> MC:Z:151M MD:Z:24C3C77A44 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:A>>>>===;================>:====>=>=<=>=======>>>>>>=>>>>>>?>>>>>>=>>>>>>>>>>>:>=>>>>>>>:>;>9>>;>>>>==>???>=??:=>>?(>???9>.29@??@@@@@3<18/?<;?>>>>5<;>>>?>>><>8-=<:;><=>;><-78;9>77>>>>>>>=>:>>>?>=(,6<:>>71<>(47/7,-=>>>)=>;->(6+++6<+=7;/&,88&.+9-7;=-1:)&+59==06<:,;,2:<,-)79:############ MC:Z:8S143M MD:Z:27C55T5T15A11G17A3T6 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:7 MQ:i:60 OQ:Z:<>@@=?@@@@>??>=??????>?@?>=??>???>?>=>>=>8>>>>=>>=>>>>>=?>>>>>>=>>>>>>>>=>>>>=>>>>>>>>?<>7>>>>>=>>=>==>=>=<=<=========<=>==<====>====<=>>?>>>>>?><> MC:Z:151M MD:Z:25C125 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKAKFKKFAFFKFFFKKFKKKKKKKKKKKFKKKKKKKKKFKKFF?@?===A>AAAAA@@@AAA@AAA@@@@@A@AA?=??@@@A@@???@?@??@?????@??@????????????????@@@@@?>:>???>>>>>>?>>>??>>>>>>>>>>?>>??>?>>>>>?>>>?>>???>?>>>>>>??>=>< MC:Z:151M MD:Z:20C130 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AFAKAKKF<9=?>??:???@????@?=???@<>.>?=69>8>????;,>,>6?>9>>>>>>>>>>>>>=>>>>4:>;>>>>>>>>?<=>><>;='===6>>>?>>>>>><>?>==@< MC:Z:151M MD:Z:20C107A22 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:2 MQ:i:60 OQ:Z:#######AA,AA<&<5.2-7?9/(.1.'-->=/<-5=096;=6(;;.1,.58;2;,<:87>7)->8>=:9<-;988>>>>==<,<926?>=====><.:;>>>>?>>>?==>>< MD:Z:10T6A1C9A10C38A48 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:6 OQ:Z:#######################AAA,,A7,,7((7>>><9>>>>>?>>>>>>>>>99>>=8<;<=5?8>=>;8>?>>?>>>>>5>>@??6;=???????<<>??;>?@??:?&&89>>>?@@@@@@@@A@@@@@@?*9>@=@@@A@>A@===3>9?>?><@=:6;< MC:Z:4S147M MD:Z:17C70A62 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:A>;==?>>?>>>>>>>>>>>??>>>>>>>>>?>>>>=>>>;>?>?>>=?>?>>?>>>>>?>>?>>>>>>>>>>>>>;>>>>>>?>>9>>;?>>>>>>>=;??=>=>???????@??>6>?)9??>@???@??@??-;>9=<87=?9==9;< MC:Z:151M MD:Z:17C133 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFFKKKKKFFFFAKKFKFKKKKKKKKKKKF7KK,AKKKKKKKKKKKFF,AF7FA7AAF7AKKFA UQ:i:42 AS:i:146 +HK35MCCXX160204:2:2202:13778:7110 83 4 57194523 60 151M = 57194446 -228 ATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCT <97@@>>5?<@?@???@?@??@?;??9@??@80===><98>6>>>>;5>90=;=8>>>>>:->>??>>:><884849<;>;>>>=<;<=;==9-<(<>>?>>=86>:94;?==;>>8882==?6??687> MC:Z:151M MD:Z:2C148 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:A7FFKKKKF??>?>>>>==<>=>>>=>>>>>>>=>9>4=>>>?>>>>>>>>>>>>>>>>>>><>>>>=6=>:9>>9>9;=<???>;<>????;???????.>.???>9.87>@@>@@@=@=?:AA5?@@@AAAA:=AAAA?AA@@>;89# MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKKKKKKKKKKKK7FAKKKKKKKKKKKFKFKKKKKKKKKKAKKKFF7FK>>>>===<===============<======?=>===>=======>>>>>>>>>>>>>>>>?>>9>>>>>>>>>>>>>>?>>>>>>=>>>>>>>>?>>>>>??@????????@???>??????>???????@@@@@@@@?><;?: MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAA UQ:i:32 AS:i:149 +HK35MCCXX160204:5:1204:10307:19874 147 4 57194525 60 151M = 57194086 -590 GTTAGTTTTCATGCGTTTCCCCCGCTCTGAAGCGGTAACTCAGAAGGCGCATCCATTCGCGTTTTCACCGCACTGTGGATTCATAGTGTCGGGCCCTGTTATTCCAATACACTCGTTATGGACATGTGAAGCATTTGGCCCAGTTGGCTCC ##################################################==69?<=%'8';.78(-4288618?><86::5;+<2-%.$4&4''1>;>?>=><<+,;,1,58&&-+,-75:16>;;<>?>=>6>><=''7?;>?=>:<*< MC:Z:151M MD:Z:0C12A4T4A9T5C8A9A1A4T23G20C3C3A32 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:14 MQ:i:60 OQ:Z:##################################################AA??@@@@@@@??@??????>?????????@??????????>>>>>=>>>>=>>>>>>>>?>>9>>>>>>>>>>>=>>?>>>>>>>>>>>>>>>?>><====>>>==<>=>>===<;&===================>>>>>??>==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF<,KKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1108:28036:59306 99 4 57194529 60 151M = 57194815 437 GCTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGTTTCATAGTGTGGGGCCCTGTTATTCCAAGACCCTCCTTAAGGACATGTGAGGCATTTGGCCCAGTTGGCTCCCAGG >-???>>=>=>8>9=<=7;;1>:=<<),01-88<:*01<<2;;<*.5:<35=>:>=>>/8=>42;5>15250=50:1**7(,<-=<>=8%<;18/00/86>9*+7108218??8*>8769==/9>,-'7??/6;1==;############# MC:Z:151M MD:Z:1T72A28T21A25 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:A,AAFKKAKKF?>=??>=>>>>>=>===<=<==<======>=<====<=>=>><>><>=>=<:=>>>>>>?=>9>>=>>>>==>>=>>?>>>>>>>>>>>>>>>?>>=>>>>:=>>>>=???>>?>>?????>?????????????@@@?@@@<:4><:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKFKKKAA8:;>>=0=<=:;@?@?@=@????@?>?>;@?>>???????????????????>=9<9>>>>>>>>>>>>>>??>=>>>>>>>>>>>>?>>>>>>><7>>>>>>>?>?>>===>>>>>?>>>==>=>=>=>>>>===>>=>?>>>?>=>>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:FKKK4)..+.;&9*=%(>>>2(2/.>??->6.>=>97.+8=9>:<>>:>>=.:-)=98=:0/2<<<9=>>=<>=><>>,=<.==7<=8%>-><==:...>=>< MC:Z:138M13S MD:Z:6T4A19A4A66T14 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:5 MQ:i:60 OQ:Z:#############################################A7KFA,A<,,7,,<(A,A(,KKK7,7,,KFF,F<,KAKA7,,7FKKAAKKFFKF,<,,F<7K<<(@>?>?>>>=>===<======>=<====<=====<==<====<==>=>>>>?=>9>>=>>>>>=>>=>>?>>>>>>>>>>>>>>>?>>=>>6=<=>>>=>>>?&6>==<>???>?>?:????>??=:>>?????>???@@@46=@??=;:# MC:Z:151M MD:Z:103A47 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@@>@@?@????>@??????>????????>????>?>>>>>>>?=>9>>>>>=>>=>>=>>?>=>=>>>>>>>>>=>?>>=>>>>?>>>>=>>>?>>>==>>=<=<==============<=====<======<>>>>>>?=?>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1223:10236:52660 163 4 57194543 60 151M = 57194777 385 TCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTT =:<==?==<==<======?=<>====>===>=>>=>>>>=>=>>>>>>:=>9>>=>>=>>;>>=>>?>=>>>>>?>??????@??>????@>???>??=????>>?==??>?@@@@@@@=@>@@5?@>8@A@??@@@:1@@@@A@@?#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFFKF;:<????>???>==???>>><@?>9>>>>>>>>>>>=>>>?>=%:>5>=>>>>>>?>>=>>>>?><>>8><>?>?>>><>>>>>>?=>>>>=;>>==?===<=<<===>=====>>>>>?>=>???>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:KKA=:>;><>>;3<:-;9==>>>>>>>>><>>>>=>9/>>&.)7<>->>17,+<=770(77<:>0(/:>??.<>9=<;>>><?<=6==<--1/:*).6?<=3>0+&1:7*1??9############### MC:Z:151M MD:Z:141A9 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:?=A@<@==)-@@@A@@@??>>????????????????@>?:???@>???=?>>>>??>>>>><>>>>9>>=?>>>>>>>?6>>?>>?>>>?>>:>>>>>>>?>>>>>>>>>>>?>>>><;<<;>?>>>>>>>>>>?6>>>@?:>8> MC:Z:151M MD:Z:13A137 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:#A>??>>=>=?=<==>=<=====<>><=>>>=>=>>>>>>?=>9>>=>>>>>>>>=>>?>>>>>>>>>>>;7>>>>>=>>>>@=>>?>???@??>?>?>???>????????????@@@@@@?@>@@@?9?>@>@A>>@BAA:@A?>;89: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKAFKKFKKKKKKKKKKKKKKKFKKKKFKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKF78;>@@AAAAAAAAAA<>?>?<-@@@@?@8.8=?7@<;<@@@;@>=@??=:???>?????=9??@@=@?????@==?=>7=>>;;>===>>>>=8?8(>>>>>=>>>?>?>;>>>?>>>>>>>????>6???>??<=>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:<=====<==<====<=<======><=8>>=>>>>>9<><>>?>>>>><>>>>>=>>>?>>=>><>?=>>>=>>>?>>>==>>>>>>????==>?????????????>????????>????@A@@@@A=@@?A@A@?@@?><:7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAKFKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAAFKKKKKKFKKKKKKKKKKKKKFKKKKKFFKKKAKKAKKFKKKKKKKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:4:2116:13565:10714 147 4 57194561 60 151M = 57194342 -370 AACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGAC =;7;=A=-?;?=??<@???<=?????@??>@=???@?=?9;?@?@?@??>?>>>>>>?>>>>>><>>7>?>>=>>?;>>>?>>>>>>>>>>?>>>>?>>>>??>>>>?>???<<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FAFKKFA,7FFFFKAFKFFAFKKFKFFAF>??=>??>??>??@?>?>?????>>=>>>>?=>>>=>>=?>>>=>>>>=>=>>>>>>;>>>>>>>=>>>>>=>=>>>>=>======>====>===<>=<=<==<====???=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKFF,1)&:--;=?=<)<5%&%(;8==%7$8.''-8-'-$8.7-28+;/8&$$$=1;:$$&'$1&%<>>>:5)-%<:4<;><>43..8,5(<013>.??4>>2=???<>.:59/..><:>################################# MC:Z:151M MD:Z:22T6A1T4A0T0T1A1A8C49T8A9T6A3 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:13 MQ:i:60 OQ:Z:AA,,,,A,,AFFKA,AA,,(,<8:<>@@@@?A@@@?@@???>=@A>=:?????>=?>??>??@?;7>?????????>?@?>=>>>>>>=>>>?>>6=>>>>=>=>>>>>>>>>>>>=>=>>>>>=>>>>>>=>;>====>====>===<>=<=<==<===<=>??><>= MC:Z:151M MD:Z:145A5 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKFKKKKKKKKKFKKKKFAFFAKKFAKKKKKKKFKKKKKKKKFF)(,.=7,-?;9)???==96,+==(7+=:@????=??>>>>>?7>>7>;43>8>?>>>482>889?>>>>:>>>>>?>>>;?+>>>??>>>>?>>>98>>>?;=9/< MC:Z:151M MD:Z:20T49C73A6 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:3 MQ:i:60 OQ:Z:##############################FAA,,,,A<,,FFFA,FKKFFA,FFKKFKKFF<7,,FF,7,F=>==<9<==8<==8<=8==<===5<9=/9;>?=<5<4,4*&7317<>?>>=>>>>?=>><<:=<:9+<;=5>8=-:6<<>>:>5+8679=>??<>:5;>>??@??/==;=>?A@>@9?;A@@?A>##### MC:Z:151M MD:Z:139A11 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAF?@A?A>A?????@??@????????>>>>>>>?>>=>>>>?>>>>=>>>?>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><=====>>===>=>=>====>====>==============>>=>??>?>=? MC:Z:151M MD:Z:139A11 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:7KKKKKKFKFAFAAKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HM3G2CCXX160308:2:2111:29143:57495 147 4 57194577 60 151M = 57194257 -471 CCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGC ?8:<=<1;9:?=4;@@;;@@@@?@=>??>??=?<:7????>????>?@?=>?>=:'8??==>>>?=>>=><>>=>=>>>>>>>;6>>>>>=>>;>>=>>>>>>=>>>>>>>?>>>>?==/<:=<=<==<===:=====<=>=<==??>=;= MC:Z:151M MD:Z:135A15 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKFFA<,<7=><=8==<=====<==<==>=======>>>>>>>>?>>=>>>>?=>>>=>>>?>>>==>>>>>=>>>>>>>>>>>>>>>>>>>=>?>?????@????@????@???>??>??@??@@@@?@A@?@?A@?@@@?;:8? MC:Z:151M MD:Z:129A21 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:1124:17787:48054 147 4 57194587 60 151M = 57194476 -262 TTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCA >88;=?;A@@A@@AA?@@?@@A@?@?@@@@@@@@@<@@??@????@>???>???@???>?>>>=>=>>>>>>>>=8=>>>=>>>>><==>>>>=>>>>>>>?>>>>?>>>=?>=>=>>=>>>==>>>=<=>===<==<===?=>>?;><<: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:KFKFKFKKFA@?@@?@@?@?;@?@>???:?????>?@??>????@????>???@=>?<7>>>=>=>>>>>>>>>>>>>>=>>>>>=>>>>>>=>>>>>>>?>>>>?>>>=?>=>=>=<===<===#=<=>=<=<==<===>==>?<><>= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KFKAAFFKK?<@A@@@A@@@??@@A?@?@@?@??=@??????????@???????=???@?????@?>??@????=?>?>>?>>>>?>>>>??>>>>?>>>?>>>>>>>???>>>>?>?>??>>>?>>>>>?>>>?>??==:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FFKKKKKFFAFKAFAA,FFAFKKKKKFKFFFFFKFKKKFFKKFAKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1212:3671:37875 99 4 57194602 60 151M = 57194950 499 GATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAG >;=<>=>?>=>>===========>==<====><===<===>===<==>><>=>>>>>>>>>>>>;=>8=>>><>>>>>>=>=>>>>>?>>>>?>>>=<>>>=>>;:*<==????>??>?>>???@>?>+=?>?>?@@?@?@??>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A<<:-08>=;:0/3/''0>9<**9&0;)/*0&+78...**.<302>>>>=>8$(<>;;0/50<9...??<7;<.8/(&=8>=<>?0+>7:?@@?@/9197@:@############################# MC:Z:151M MD:Z:50A44A29A15T9 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:4 MQ:i:60 OQ:Z:,,<===5========>==<====><===<>>>?>>>==>=>>>=>>>;<>>>>>>>>>>>=<>:;7>>>>>=>=>>>>>?>6=<9>>??@???:=;=???>>?=?9>?@?>?>??>???>>@?@@03;?A@@?@@?=3=A?>=9:< MC:Z:151M MD:Z:107A43 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKAKKK6=6/&9<>?<@A7=>.?/;9--=-@@?>19->)/:?=>@=<<><@89-<=?5==7<3@>???>9+5?>?:<>>??;9>=?7>>?8>>>>><=>?>=<>?>=;??>=>?>>>>>?>>>?>>>?>?>???9=< MC:Z:151M MD:Z:34A116 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:#AF<<((/@:(:(?>;<37007<=9;(');>>6..(3)8)&207>=>>;>>><9><><:=,>:?<57<,8=>>:;86>>>=8(73--6>==>==<==993<=>=><8< MC:Z:151M MD:Z:15T12T79T42 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:3 MQ:i:60 OQ:Z:################################A,AA,7,AAF<<7,7=6:=4:3>;;>>2>8>=744<='9=>=;=79>>/<5,857>)054::(84=381>;8&=;97<=5??=>>>?<-:>=/><68<4=;'=19988<>8<=;=;'-5'/+7>8',<6-'?:?>?)-7?3?>71>(;?@<<### MC:Z:151M MD:Z:41A100A8 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAAAF<:+0//@>=:@@@@@??;?@@?@?>???????>6>?:>?????????????9???>>>>>>?>>>>>>=4<=9=><>>=>?>>>>>>>>>>?>>>==<<>=>>>=>>><>=>=>===>=>=>?=>>==; MC:Z:151M MD:Z:17T133 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:77FAA@@=>@@=@??@?@??????????@???????????@????;5?>>>>>>>??>>>>>?>>>>?>>>>??>>>>?>>>?>>>>>>>>??>>>>?>?>=>>>>?>>>>==>>>>>>>>>>>??===< MC:Z:134M17S MD:Z:136 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:FA???@?>?>????>?>????????>>>>>>=>>>>>=>>>>>>=>>>>>>>?>>>>?>>>=?>=>=>>=>>>=>>>>>=>?>=>=>><>>=>====<=<=====<==<<=<==<=<==<=<=>>=>?>?=>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKFKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:7:2215:6147:36575 99 4 57194621 60 151M = 57194794 324 TGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCTCCATCTAGGGCAGT >;=???>>>>>>?>>>?>=>=?>?>>>>>>>>>>?>>>>>>>>>>>?>>>>>?>>>>?>>>>>>>>>>?>>>>?>>>>??>>>>?>>>?>>>>?>?@@@????@?@?@@???@?????@???@???@?@?@A@@@@A@@@@@A@A?><::? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:19319:5036 99 4 57194622 60 134M17S = 57194620 134 GTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATAGATCGGAACAGCACAC >>>???>>>>>?>>>?>>?>>>==>>>=====>>>>>>>>>>>>>>=>>>>?>>>>>>>>>>>>>>>?>>>>?>>>>?>>>>>>>>>>>>>>>>>??>>>>>????@@?????????@???@???@?@???>??@@@@@;@??4??><:9? MC:Z:15S136M MD:Z:134 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKK??70-;?;==99?2?>>??:7:>??:??=:98%>>>>=>5<=>:5<8>/<<>=>=<=78;<337;/7;<;=>=<=<=>=<<>>>9=;?><=68><>8=?====<=<=<=:=<==<<=<==<=<==<>=====>?><+>??7;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:<=?>=><===<===>===<<=#===<=====>>>>>>>>>>>=>>>=>>>>>>=>=>>>>>?>>>>?>>>>?>>>=>>=>>>==>>>>=?@?>?>??>???(;?????>?>???>???>?>???@??@?@<;>@?@AA@@(36@7::? MC:Z:151M MD:Z:24T126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKKKKKKKKKKKKKKKKFKKKAAFKKKKKKK,77A>@3?@@?@???=????6???>??@?????>>*8?=>*<>>>>>=>>=>=>>9>>>>=?>==>>>>>>?>><>>>=>>>>>=>>>>>>=>=>>=9>>>>==>>====<=====<=<======<=<===8<=<===>>>>>>?=>>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKFKKFF7KKKKKKKKFKKKF??@>>>?>>>>>?>>>>>?>>>>==?>>>>>>>>?:>?>>><>>>>>>==,0=9>>?>>?=>>>5>?>?;>>>>>>>?>>?>>>?>>?>>?>.<=7==;?7:;???@?7-9=>>85;=4:>?@>>=>@@;@A=?:?@72:<8###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:?><=>====><==<==><=======>===>>>>>=><>>>>>8>9>>=>>?>>=>>>>>>?>>><>>=>>=>==>><>>>=>=>>=9????>?><;?;???>9???>=9>:9@9@0??=>;<=@@A@=@19<=9## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKK>?==>===8;<==<==><=======>=====;>>;>>;>>>>=>7>;>>>?>>'.)4<3=?><>>>==<,8>>=>>>>>>=>=>==9>=??>?>?????2=>?>?>?8???>???7>>?8@681=%*(=5A@?<><### MC:Z:151M MD:Z:57C93 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKK<>>>>>====><==:=7><===#=<=><===8&8===8=><>>=>9'7==77>>;>>>>.=0<=<=4<=><;><;<>=<>>=>(==558:=>*<'882=<=6>>?>;?8<>?:1?=################################# MC:Z:151M MD:Z:24A9C87C10C6C2C7 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFK7KKKKK#KFKKFKKK<,AFFF7FKFKKFKK,AFF7AKKFKKKK7A7FFFF7FKKFFKAAFFFFKKKK,FA?@<@=@A?=<;8/*<8/)>,6?>@:?@?>:=@??=9'?;;84<<>??@??>???@?=<>8??>>=>>>?@>>?>>?>=>=9>>>>>;=>>>?<;=>:>>>;>=5>8(5>>>?>>8=?<=>>>><==>>>>>>>>>>?9==;:< MC:Z:151M MD:Z:18T3A128 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:7AKFAFA>>>>=>>>>>>>>>?>>?>>>>>>>>>>>>>>>9>>?>>?>>>>>>>>??>>>>>>>>>>???>>>>>????>??:?@>>>????????>?>??>??=?=@@@@??>??:???;<8?@@@@@?@@@@AA@>9>@A@=?>;86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKAKFKFKKKKKKKKKKFA>?@?@@@A????????@??????????>??>9>??:>>>>=?>==>>>>>>?>>>>>>=>>>>%=>>>>>>=>=>><'>>>>=><>>>>>=>>>>>=>==*>===<=<=<-8<=<======-=<====<>=5==>>>><>??>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKKFFFKKKFKKFKKKKFKKFKKKKKKKKKKKKKAKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKF,KKKKKKKKKKKKF,KKKKKKFKKKKKKKKKKKKKKF,KKKKKKKKF,KKKKKKKKFF,KFKKKKFFF=?@@@A@@@?????@??????????????????:??????>>=>>>>>>?>>>>>>>>>>>>>>>>>>>>>>>>=9>>>>>><>>>>>>>>>>>>======>>===>=>8===================<=====>>>>>???=@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:KKKKKAAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:2212:12682:53346 83 5 156355146 60 151M = 156354993 -304 TACAACATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGA #76;=<:>==>><@@@?;88.>@@?@@@???>9??7??@??@@???==??@@?>????>?>>@?>>?>>?>>?>>>>9>??>>=;>>>?>>>>>>>>?>>?>>>?>>>?>>9=?>>?>>>>>>>?>===??>>?>>?>>>>>>>??@?==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:#KA=2??@@;-??>?=>>8->><>>?>>>>>>?=5>>>>>>>=9>>>><8+=<9<0>><8;>>?>>>>>>?>>=?<=6>?>;=>>==>======:==<=>===>>>>>>>?=???>><< MC:Z:92M59S MD:Z:2A148 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:################FKKKKAA:4(@@6A:AAAA=@@AAA@AAA?@@@@@@?@;@?:@@A@@>??????@?=??????????????????????>9?>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>==7>>>>>>>====>=>>>>>>==>>>=>===>>>>>>??==9; MC:Z:151M MD:Z:4A146 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:<<7A,FA7A7KKAFFKFFKKKFFFFKKKKKKKKKKF>>>>>>>>??>?>>>>>>>=>>>>>>>9>>?>>>?>>><>?>=?<;<>>>>?>>?>>>?>>?>>?>>>>9>?>>>>>><>?>><=>==>?8,+=?;@69>@??7>9<<8=??38?;819?<@5:7)'5/>)6@@0@;@)=;>;:5## MC:Z:21S130M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKFKKFKKKKKKKKKKKKKFKKKKFKKKAKAAFKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKFFKKKAFKFFKK7,,FKAK7AFKKKFFAAA:97=@8?;;@>A@@AA8>:6;/:),>;?5?96=?;>?:?@?????:?@?=1:,???@??>><>>>?>>>>>>?>>>?>>9>?>>>>>>>>>>?>>>>>9==?>7?>>>>>>>?>?>?>?>9:<6< MC:Z:151M MD:Z:1T149 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:####################FA7?::*>:.;91??=0>?804><>:>>8631>>>>/4;4>>=.8>>>0;0*&=815=><>>>:93:9=>=8.>>:2/=67>>=:<=6>>>>=>>>=>=9; MC:Z:151M MD:Z:2A8A2T7T8C3T66A48 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:7 MQ:i:60 OQ:Z:#################################################FKKFAAA,AA,7A7FKF,FF7,AFAA7FF7A77KKKF,/8(8<5=%/@;?;A@9,/'8@@@A?;6?>>911)>1?1):???>?8=?)><<:?@>.:>====;(?<5&><4?9><-==?5>9=883(?>>>98>>>>>=>>>>?===>>==>>=>>>>?>?>?>?2>>?<;< MC:Z:151M MD:Z:5A2T47T94 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:##########FAFAAKF<,<,7A<<((KKFAKFA,,,7KKKFKA7FAAA77,A7KA,AKFKFFAFF,FAAKKKF,AFFFFF<,KA7(KF??>>>??>?>>>>>>>>>>>>>>>9>>?>>??>><>>?>;?>>>>>>>?>>?>>>?>>?>??>?>?:?@??>?????@?<<=????@.9<>?@>=8?@>==??:46@4?@@@@A@?@?;3;<4<=@:/?@A?@@@@????=>??>?;??:????>@?>>>????>?>>>>>>=>>>>>=>>>>>>=>=>>=9>>>>=>>>>>>>=>>>>>=>=>>>>>>=>=>>>9===>===============<=============<=<>=>==>>??>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKFKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1111:8836:13035 163 5 156355156 60 151M = 156355264 259 AAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCT =<<>>?>>=======<5=========6=====>=>=>>;>>>?>>;>>>3;=<<>=>>>;>>=>=>597><=:=<;<>>>>9>=>>>=>=>=??????>???89>=/8???==?/>=?=<@?;9?>@<;?@>?443+;:### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKF7FKKKKKKKKFKKKKKKKKKKKFKKKKKKAKKK7AFF???>?>>========<=======8=====>==<======>=====>=9>>>>=>>>>>>=>=>>=9>>>>=>=>>>>>==>>>>=>=;>>>>>=>=>=>9=>=86>>?<=?>?>?<>>????<;?@?=?8@9@@?@?=18=<### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAKKKKKFKKKFKKKKK77FKKFFKKAFFKKFAKAKKKKAAFFKFK=>????>?>707>>>44>:=>/<9>>>>>>=>9>>>?3>=>>>>>>>=>3:>>>?>>=>>?>,9=78887>?;==?06806;9?6<69<@>>?:>?08;?)?>:***.'.:1@0A,;7<@3:?>-@@1A9>*>9@9@:;*+:=7?> MC:Z:151M MD:Z:105T45 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:99:>9A@?A?AA@?A:@A:@=>?6?@A=9@A=9@:>>???@??@??@???>:?@????;?>?@???????>@>>>>>>?>>>?>>9>?>>>>>>>>>>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>??><<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:KF<7<7KFFFFKKFAKAFKAKFAFAFKK8?????@?<:>>>>??@>/9>>>><>>>>>>>>>>>>>>>>=6>:>>>>>=:>>>1<>>>><=>=8=>>>>><=<<6=====<<<=9:==<=====67=<<7==<===========9=>==;??>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:A,A,FKFKFKKKFA7KKFAKFA(FFKKKKKKKF7FFFAKKKF,7KKKKFKKKKKKKKKKKKKKKKKFKAKKKKKFAKKK7AKKKKFFKF7FKKKKKFFFFFKKKKFAFFKAAKFAKKKKFA=??@@??>???????>>??@???>>>?>>?>>?>>>>9>>>>>>>>>>>>>>>>?>>>>=>?>>>?>>9>?>>====>>>>>>>>>====>==>>>=====?>>=?>?<=>=>>?>=>>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:KFF7FFKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:4:1204:9831:50937 83 5 156355159 60 151M = 156355009 -301 AATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAA ><9=??A@@@@@@@@@@@@@??:?>@??@@?????@?@@???????@??@????>>?>>?>>>>9>?>>>>9>>>?>>>>>>>>?>>>>>>?>>>?>>9>?>>>>>=>>>>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>>>?>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FAKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF???>>>>>===========8=====>========>>>===>><===9==>>>>>>=>=>>>9>>>>=>>>>>>>=>>>>>===>>>>>>>>=>>>9=>=>===>?????????????????????????>?>?@@?@@@@@@?>=;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAFKKKKKKKAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:3:1223:21745:14160 147 5 156355160 60 151M = 156354998 -313 ATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAA ####9*@@??A>AAAA>@:@>9>;3@=@?8>@>?A9;=?=>???@?>@<>@?,???@>=?:?@?>>>>>?>>>?>>78=>>>><4>;0>?>>>>?>>>?>>?>>>>>>>?>?>?>?>>?>>>>>@??==< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:####A,FKFFK?>>>>>>==>===8=====>==<======?=>>=>=<<==?==>>>>>>=>=>>=9>>>>=>=>>>>>=><=>>=>=>>>>>>>>=>>>9=><<>>>><>>=?>?=6=?=>???@?????>??>?>??==4@?>@@?A@@?><:;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK/<7?<9A>?@9@<*99AA@@@@;A:2=9.>@:@@A@?@??;@??@??@??:8:?><>9;????@??>?=?????>>??>@>>=<>>9>?>>>:=4>>=>=>>>>?>>>?>>?>>>>>>>?>?>?>?>>?><7>>??>>??>=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:AA,777<,A<?@@??@@??>??:????>@?>>??????@??????>>>>>>=>>>>>>=>=>>=9>>>>=>>>>>>>=>>>>>=>=>>>>>>=>=>>>9=>=>>>>>>>=>>======<=============<=<=<=<==<==>=>?>>???>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1212:6512:47017 99 5 156355166 60 151M = 156355390 375 TGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAA ?==>??>>>>>=====8=====>=========>====>=====>><=====>=>=>>>9>>>>=>>>>>>>=>>>>>=>=>>>>>>>>=>>>9=>=>>>>>>>>>>>???????????????????>?>?>@=/>?>@?@@A@A@??<;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKK7>060,&&)6:,.'+:9/&-6(-05.+4;;8=84=421=08>>3+)9=<3'<:;<>=######################################################################################### MC:Z:151M MD:Z:13C8C3C35C5T8T4T4C4T35A5T0C12A2 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:13 MQ:i:60 OQ:Z:AA0====8===88><=9=;====>==<==>=>>>>>=>>>>>>=><>>=9><>>=>=>>>>>=>>>>>27=>=<>>>====>>9=>8.:>???????>??>??>???????>>?>?*=*>;?@=:;>?AA@??@@@?@5=98= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:=>99>/;7;:78;:0,?;885<;??????=>/?>?>????><7==>>=9===9==>>>>>;=>>>>>;;=<>>>>>=>=>>>9=>=>>;>=>>>>>><;===<====#========;=<=<=<===???<>= MC:Z:72M6D79M MD:Z:6T4G5A10T1G80C24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:KA<,A<,,,,KFFFA<>?>>=8====<8<=<<=====>===8<=;==>>>=>>>>>><><9><7<=>>=>:>>;>)9<>>>>==9><=>>>>>=>>>88>=.;>>/<88;??9;.>?6???=??=::?>=?;?9<22*8=921:==@@@=44;:(<=9;7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:,AAFFFFKKKKFKAAFKFFKKKKKKKKK=?>=>==<======>=====#======<==>>>>=>=>>=9>>>>=>=>>>>><>>>>>=>=>>>>>>>>=>>>9=>=>>>>>>>>=>???>??>??????????>??>?>?>?>>@>=??>?A@@<@@@@@@@??>@??@@=<:8> MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKFKKKAKKKKKKKKKFKKFKFKKKKK UQ:i:2 AS:i:149 +HJYFJCCXX160204:8:2212:5619:49513 99 5 156355182 60 151M = 156355452 421 GCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCA =;??>>=>>====>============<======<=<==<8====<><====><:==>>=>=>>>>>>>>=>;:9=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>=>=?>>>;?>???>?@?@????@??@?<@@?@@@???/39? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:@@=@@@A@>=1?9>?????>??:9>>??>:=>=91:=<>>>>=:5<>>>>=><>>>9=>=>>;4>>>>>>>>>>>>=>=>=>;;4=>>=><><=:;:0=<===<=>==========<<=><==>=>>==???<;> MC:Z:147M4S MD:Z:2T148 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:###AKKKKFFKKKFFF7KAKFKKKKFFFA<7KKFKKKKKFFFA7?>>>>>?===>=>=>=>>>=>>>=>=<=<>>>9>>>>=>>>>>>>=<>>>>=>=>>>>>>>>7>>>9=>>>?????????>???>8>9????????????>=?=@@;=@?>?@??@;>@@?@@@@@A:@?=/??@@@;>?@@,78# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKFFKKKA7F7KKKKKKKKFKKKKAAAFF7FAFF2=9@@AA<3?3@=@;@@@@?@=9?=@?????????????????>1?=385:>=?=>>6>>>>>><>>>==9>=:<<>>>>>>>>>>>>>>>=>>>=>?====>=>>>>>>>=>>>=>====>>>>>?>>=8; MC:Z:151M MD:Z:7T7A135 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:#AFKFA<,,,7F7,<(KKA,A7?;907??>?>94>?==59$2930>=:>68((.=8>>>>=;>>>>>3;>5.>>>===>>==7*==>=7><6:=>>>>>>>======<;=<<:===>======;==========>====<=>>>>@>?????>???==1?>??????><>???:=>=>>>>>>>>>>>>>==;=>>>>>>>>>>>>><==>=>=<>=>>>=>?>>>>>>>>>=<:==<===<===<==============?>?=<= MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#AFFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKFF7AKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKFFKKKKKAKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:2 AS:i:150 +HM3G2CCXX160308:2:1104:19065:11347 163 5 156355200 60 151M = 156355380 331 TGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAG =>=??>>====<======<=<==<8====<=<==>>><>>>>>=>=>>>>>><>;>>>9=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>>?>?:?>>?=?@??????????>>??>????@>@?;>/.=/>9::>?>?>=9->?=;????>?>>><9->=>=>>>9=>=>>;>>>>>>>>>>>>>=>>>>>>>>>>>>=<>===>=>>=>>>==>>==<===<===<===9;==<============<=>=>>=?>?=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A,FA,AA,,<'.)9(<7===9-=5><0>>9;;59;3>>=5(97/>(>>=.(=(.(=(,=->=>;1;;>>>>=>>>>=>>?>>>;(>=2;8<=3)18?>>>>>0>>>?>?>?>>?>>>=@> MC:Z:131M20S MD:Z:11A0T16G44G40G35 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:5 MQ:i:60 OQ:Z:##############################AF7F==>=?>=>=>><8====<=<=====<=====<=<=====<<=<>>=9=>=>>>>>>>>=>>>>=>>9>>>>=>>:>>=;>=>=>:>==>=>>>=>8>>>>>=6;>>*6???>???>??????1::>7>?>>>=??@9@'<@?>=9>>9>=====>>>=>>=>>>>==><9::>>>7:>:=<9=>:>,:=<<8>;$1=>;/:<>>>>8::8<<8?8?;???;??::??9>&0/=:==/=>>:>/@@?@@@@?:/)8@.+=<<########################### MC:Z:151M MD:Z:1A55T34T57T0 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:4 MQ:i:60 OQ:Z:A#AFFKKKKKKKKKKKKKKKKFKKFKKKKKFKFAAKKF7AFAFFKKK7F,AFFFAFF(;:=?<;@??@?@?????=>?????>?>??????>?>???:=>=>>>>>>>>>>>>>>>>=>>>>>>=>>=>>>=>=>==<8==>>>=>?>>>>>>>>===>>><>>=<===<====;========<=<==<=<=<==<>>>>>>>?>>?> MC:Z:151M MD:Z:68G82 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FKKFAAKKKFKKFFKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAF7FKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HK3T5CCXX160204:2:1112:16904:59850 163 5 156355219 60 151M = 156355292 224 GAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGG <>:?>:>?>>>>>>>>?>>>>>>>=>==>>>>?>>>?><7>?>>>>>>>>>>?>>>>?>>>?>>@>?????>@?@>><=>;==????@;??>=?????@???>>>?@@@@>@>>@@@;1@@@@@>><89?@@@=@@B@B@ABA;####### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:AA=>?>6>>>?>>,==2=>9>>>>>>?=>>=>)7-(-5=>>>>>91?8')4$,9)$'0?(=7;&7;='.-86/<7+>5:<=@;.':;@@?(/1(/<@*?######## MC:Z:151M MD:Z:50A1T2A8A3A7T8A6A3A3A3A24A21 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:12 MQ:i:60 OQ:Z:AAFAFKKAKKKKKK,FF>>;<7>>=<<>;6;:=<========<===5<9<===<7=>><>=>>:===>>>>>>8<>>=>>=>=>===;>=>>>==<:>>>>>>>>>==>>=>>>==7>=<>>??>0>>=:=<=>)69>?>?>??>?>??@@9@########## MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:?======<=====<=<========<===8=>=>>>>>>>>=>>>>=>>=>>>>>>>>>>=>>=>=>=>;=>=>>>==?>>>>>>7=>?>>??>???>???>??????:????7??@>??>??@?@@?@@@@@@?@?@B?@?><98; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKAFKKK7FAFKKKKFKKKKKKKKKKKFFAFKAAFKFKFF< UQ:i:0 AS:i:151 +HJYFJCCXX160204:5:2118:5578:21596 83 5 156355226 60 151M = 156355092 -285 TTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACAT ######?@@@>?.8>>;/;??????>?=???:=?>??>>>??>==>>=;>>=>>>>>>>>>>>>>=><:==<;>>=9>=>?>>>>>>>>>>=<>>=>>=<=>===>>=>>=>=====<=<==<=<=<==<=======>=>>>>=>??>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:######KKAKFA,AFFA,AKKKKKFKKFKKKKFKKKFKKKKKFFFKKFAKKKKKKKKKKKKFKKKKKF7KAFFKFFAKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:2:2215:26260:22581 147 5 156355233 60 151M = 156355126 -258 CACGATGGGGAGATTGCGGTGAGCCGAGATTGCGCCCCTGCACTTCAGCCTGGCAACAGAGAGAGGCTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATT ######<4<*;A@//)&+AA=@2759:<-/.2$%6((A7:);)7<)>9(@?=56,-)/:/><68*(9.'96.96?-+7:?>??@=8=?>>>?<++878=>><<==>=/=;>;>9?>?>?>>?>?>>>>>>>>>?>>=::>==>>>:>><>: MC:Z:151M MD:Z:2G14A15C2A28A85 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:5 MQ:i:60 OQ:Z:######A7A,7KA,,,,,KFAA7??>>=>=>===>=:>==>>9=>===>====>>>>>>>>>>>>>>>>>>>>>>>=>=>=>=>>>>>>>5>>?>???????>???>???>??8;????????@??@?=.<@@?=?@@=@?@7@@@=@/=*<;>??AAAA;4A@@>#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKK?>>>?>=>=>>>>>===<===8<=<========<======>==>>=>=>====>>=>=>=>==>=>>>=>?>>>>>>>>>>==>>=>>>=>>>=>>8=>>>>>>>>?9>9>>=?>?>??>>????>@@>????>@@@<@@?@?7;00;>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKK7FAKKKKKKKKKKFKKKKFFFFKKKKKKKKFFFKFF@@@@@?@?@@@:>?>??????=9???????>>?>>>>>>>>>>>>;==>=>=>>=>>>=>?>>>>>>>>>>=>>>=>>>=>>;=>>>====>=======<==<=<=<==<======<=<====<======<===>>>?>>?>?:?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:KKKKKAKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFKFKKKKKKKKKKKF=>=:'0>=>>>*9/>>>>>>>>>>=>>>*003=0:2(>=7>3884)0==8:2<>>==<=1>======.**=)==;;<===<==:=====9;>=<>>=?>>>>?>?6=> MC:Z:151M MD:Z:27T6G4C7G31T31G39 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:6 MQ:i:60 OQ:Z:7FF,<<<,<<,F,A7FA7F7<,,,,,FA,,AA<<,FA<7,,7FKFFA,,KKKKF,<7KKKKKKKKKAKKF<,,,,F,<,,KF7K=8>/'*059*>7.09>10=>%.(.*3><.>>>>>>>>>>>>>>>>>>>9>>8=<7.=>><:=<2.=>>=>>>>>=8.===8>==;>=============<=:====>>=<===>>>>>>??==@? MC:Z:151M MD:Z:24C7T5C10T4C96 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:#########################FA?=<>>>===>=>>>>;>>>>>>=>====>>>>=>=>=>=>-.<<>==>>>>>>>>>>>//8);;>;=>??>1?>;?>??39=<3.7.:<>?><>???@0:@4<0.<)14+@@@7/@############################# MC:Z:151M MD:Z:46T18C26C29T0C2C9T3C8T1 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:9 MQ:i:60 OQ:Z:AAFFFKFKAKFKKKKKKFKKFFKKKKKKKKKKKFKKFKKKKKKKKK,7FFFFAFKKKKKKKKKK,,7,?8@@@@@????<==??:????>?>?>?=>?>???>?@??????>>>==>>>=>>>=>>>=>>>;>>>>>>>>>=>==>=>=>=>>=>>>>>>=>=>>>>======<<+;====>=====<>=====<=>>?=:;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:7FKKKAA<77?;/%%(=??>7966)--0/%5@>80(????8<2.9/'+8'(>>=??;;>>>:<>>?>=>?=>+=2;,(;<8<7>>>?>><>>6>>>?>?>?>>?>?8>>====>>?>>>:=>>>>8>?>>>>@@=;;> MC:Z:109M42S MD:Z:7C33T27A60 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:###################F,KFF<((,,FKKF7A<7,,,7,(;>)/4A;83;).979.)7?????????@>;?@???@???>>????8<8@:???>?>?>?>?>?>>?>?>>?>>>>>>?>>>>>>>>>>>?>>>>?>>>>?>??>>>?>?>>?>>>?>?;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:######FFFKA<,7FFA,,,777,>?>>>>?>>>==>?>>>>>>==>>>>>>>>?>>>>>??>>>>>>>>>>=>>>>>>>>>>>>>>>>>???=>=>>>???????????????????????=?=?==6?72??@>@@A@@@?@=<;@@@?@@@@@@9:2@=<09;:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFKKFKKKKKKKKKKKKKKKKKKKKKKKKFFKAF?6>:;;0>=?>?>>>>>>>>>>==<>:>=>=>>>=>>>>;3>>>=5<;5>=>>=>===>>=>9>>>;<>=8>>==>=====<==<===>==<=;:;;====<<=<<=<<8=>>=?>?=@> MC:Z:151M MD:Z:0G150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#KFF<<,A7<,7AAKKKF7AA7,,KA,FA??????????=?1=>?>?>?>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>=>>>>>>>>>>>>>>>>>><=====>>===><>=====>======>=============>>>>>?>?=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z::>@@@@:8*09&@>.??=???:00.*:*?>9>7>>=7>>><>=(,>==6>>=>><<==)>>>>>>>>>>>>=>>>=>=>>><><>>>>>>=>======>>==<>=>===>====;=>===============>>>>>?>?2?? MC:Z:100M51S MD:Z:66A84 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AFA7A>@>.141+=>?@@?:>90?=1'4401??????:?>?<=>>>3?<<0*>?>????<9=?>>>>>>>>>?>>?>=>>>>;>>>>>>>>=>>>><>=>>>>>>>====>>>==>=<>>=<==<==>==>??==>= MC:Z:20S56M75S MD:Z:30 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:3 OQ:Z:AFFAKA@==?>>>=>>>>>>====<==<=<=<=<<=<===<=>=>=>>=>>=><===<>>>=>>>=>>>>>>>>>>>>>>>=>>=>=>=>>=>>>>>>=>=>>>>=>>>=>>>???><>@??>??;???=??>??>??.<:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFK;;???>>>>>=>>>>>>>>>>>>>>>>><>>9>>>?>>>>>>>>>>>>>>>>>>>>>,<>>>>>>>?>>7>=>??>?????>,-:8)9?-*6.56>:>7>=*/7;>9>??@>/?=:=< MC:Z:151M MD:Z:87G9T35T17 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKFKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKFKKKKAFFFKKKKKKKKK,7@@?;@@>?>????>?>?;>*>''???><9???????>>>=>>>=>>>=>>>=>>><>>>>>>>>>=>=>>=><>=>>=><>>>>==3>=;>=>>>>>>==>>===>=====<>=====<==<==<;=<==<=<==>>>>>???>=> MC:Z:151M MD:Z:27T123 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:=?>>>>>>>=>>>>><>>>>>=>>>>??>>>>>>>>=;=>=>>>>>>>>><>:=<><>?;7:>>-<<=8=.=:????<<><=><??==?=69@@@@@>@>&72.9:@>>??A@@?@@@:<<7=? MC:Z:151M MD:Z:127T23 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFKFKKFFKKKKFFKAFFKFKKFAAFK,AFFAF7AAKKKKFFFFKAKFFFAFFKKKKFKFKKFKKF><:86?@@@2<>?>?><5)=??7>5>=0????>??>>>>=>>>=>>=*>>>>>>>>>>>>>=>=>>=>=>=>>=>9>>>;<<:>=9>=>>==>=93&<>======<==<=;:*;:<(<=<=<===>>>>>>>?>>A> MC:Z:151M MD:Z:101A28G20 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:??@A7<8/>??@?<<8.=>?-?=>8)???>8>=;<9>>>>>>;>?=>>>?>>>>>>??>>>?>?>>?>>>>>?>>?>?=>>>>>>>>?>@>>>:< MC:Z:151M MD:Z:5T5C14T33T90 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:4 MQ:i:60 OQ:Z:##############AA7,77<.-?@@,-7<@>@=@9<);)==A???:'7>=.=69'<678.=';>?==9?=>99=5)>(7=9>/(-4????>=;-8?>>>:?>9=(>>>?;>>>98<>?>>?>?>>>;>>>>>?>?>>?>>???;8< MC:Z:151M MD:Z:21C23T7C6T90 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:4 MQ:i:60 OQ:Z:###KFA,,,,7,AA,A7FA,,AFF,,7?@>?>>?>>>>>??>>=>>>>>>?>>>?>>>?=>>>>>>>>>>>?==>>>>>>>???>@??@?@??@???????9;9?.:9;@?@A>?@?;@&218<>@A.@#################### MC:Z:151M MD:Z:113T31C4A0 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFFFFKKKKKKKKKKKKKKKKKKKKFKA7AAFFFKKKKKKA;-7);-;=@@@@?????@:<->?>?@??>?@>?>?>>?=?=>>><>?>>>>>>>>>:>?>>>>?>>>>?>>?>>>?>?>>?>>>>>?>>?=?>>>>>>>>>?>?>>?>>>>>>>>>??@>?<> MC:Z:151M MD:Z:8T3T14C123 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:7FKAA7AA,<,<,AAKKKKKKKKKKAA,AKKKKKKFFAKFFKKKFAAKKKFK>>>>??>>>>>>>>>?<5>?>>>?>>>>=>>>>>>>?==>>>(=>;?-=>=>>?>8>7(3=>,=1.8=?>????<=:=??9;;:<6?@).)4%7:9:>.:<&26&&2.7<7.-<-?--99<@A@?=:?################# MC:Z:151M MD:Z:48T45T12T2A24T2T0C7T3 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:8 MQ:i:60 OQ:Z:>>>??==>>>>>>>>>>>>>>>>>>>>>>>>>>9>?;:>>>;=>>>>>>>>>>>>>>>>;>>??+;38>??;?<<>???<28???=99?=><<;>?5=9<.15>::>79::?/297?8*.?@################ MC:Z:151M MD:Z:71T63T2T8 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKKKFFKKKKKKKKKKKKKKKKFKKKK<>>>>>>>>>?===?>>>97=<>>>>><88>?=<>>=:>=>?>?>?>>5>5879'/-:;>?8/<=>>>==>>=>>;>;>>>>?>;??><=?@<<=<-0(<=(<=79??=?6.;?.>.>?7>==@-)06;@A@1>=<=?>>?>>>>=====;<<==<===<===<=====<=299==<<=<>>=>=>=>>=>>>=>>=>=>=>>=>>>6<>=>>>>=>?>>=>>=?>>>9>=>>=>>/<>=>>*<>?>????????>>?>?>;>?7=?9>85?@?>>0=;>59<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKAK,>>>>(7-&;=7>(7:--;>4,<4>>>?(&:+85+05=<7:097(89<-147############################################################################################ MC:Z:151M MD:Z:2T9A7A42T4A20G0C5A8A3A1A13A5 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:12 MQ:i:60 OQ:Z:A<,AFFAFFKKF,A,,AF7F,A<,,AKA,A;,@?)'2/8:6:;<:,.92=<=9')?>:9:6.%998(2.9;<9/4)/7<=,?72>?=;>>8=87>?=>>>;75=>;;>?>>>?=9<>=>>>>>?>><>?>>>>>>>>>?>?>>?=>??>;7< MC:Z:151M MD:Z:13A26T3A85 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:#######################KF>?>=<<==<===<===<=============>>=>>=>=>=>>=>8;>;=<>=>;=>=><99>><>>>><7;===<>=?>>>>>=>>=>?=>?:>?:;=>==??:>????>?>??>?????9;@@?@?@?83>@?@=?># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKAFKAFFKKK7FKKKFAFKKFKKKKF7FFFKFKAKKKKKKFKKKKKAFKAFKAAFFFFKKAFKKKKKKFKKKKKKFK7AKKKFKKK77FKKKAA89;>?:?=;A@@@A@==-.=??????@?>/6.67?>@??9=9>@=?==@>?=;7>>>>>>>><8?>>>>?>;==?>>=>>?>>?>>>>=?8:?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>@>>?8> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:KKKAFF7FAAKKKFKKAA,,FKKFKKKKFF77,A7KFKKFA==>>?>==>>====<===<===============<==<=<=<=>==>>>>>=>=>>>>=>>>=>>=>>>>>>?>>=>>>?>>>>>=>>=>>:>>=>>=>=>=>>>>>>>??>?>??>?=>=>;>??>?>?>?>??>?@@9:?@??>=;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK==>>?>==>>====<===<===============<==<=<=<=>==>>>>>=>=>>>>=>>>=>>=>>>>>>=>>>>>>=>>=>><>>=>>=9=>=>>>==>>:>>?=??>?==???>??>?>?>8>=?>?@@@>?@??>;;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKFKKKKKKKKKKKKAKKKKKK>>=<===<===<===============<=>=>=>=>>=><>>>8<<=7><==>><=>>=>=>8=>?>>=>>=?>>>>><>>9>>.;=>??>?>?>?????=???>?>??>??<=>?8=>9:<>9829@<@@@0;?<:67>@>;### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKK?=<=?=>>>=>==<===============<==<=<=<==<===>>==>=>>>>=>>>=>>=>>>>>>?>>=>>>?>>>>>=>>=>><>>=>>=>=>=>>:>>>>>>=>=??>:=???=>?>?;;>??>?*=?=?@?@@?@@@><;<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKAKKKKKKKKKKKKAFKKKFKFKKKKKA?=<=?=>=>=>==<=8=-<===80===8<<;=<=<=<=<<4<9=>===)715<:<><&;=':=<9=<7<>58407>-98>=%73<>/<6:=>=>=>6=*7'69;*8:>3:>=::.<>8)6==?>?;<2:?3**;07<>95;;@?###### MC:Z:151M MD:Z:61C20G18A49 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKFKFKKKKKAF,AKKK<7KKK7AKFKKKFKKKAK7FAFKKKF,A,7AAFKF,FF,AFFAFAAFKAA7,.?:@?@:>@??6-??=.9@?@?@??@?@==@???><7@;<8>>>>=>>>?>>>>?>>>=?>??>>>?>?>>>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>?>>?>???=?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:A7KKKAFKKKKFA,FAFFKAFKFK<,KKA,AKKKKKKKKKKFFKKKKFAAKAFAKKKKFKFKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:1209:3640:46261 147 5 156355318 60 151M = 156355156 -313 ACAGAAAGAAATCCGTGGGGTGCATGTGCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAG #####################;7/?8@1>@?@?@?8=?@?*<0?>???<;=>*0???/.??;?>5.?=9:>=:>=<<;05=:>=>=>=>>>>>>>>>=>=><=>.>>>=<><=><=<>>==<>===>==<====<>==??>>>= MC:Z:151M MD:Z:14A4C7T123 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:3 MQ:i:60 OQ:Z:#####################A<,@@<=>=;6:(=8>??:72'??>?>?>??=?=????>>:>>>>=>>>>>=:>>=>>>?>>>>>=?>><>>=>>=>>=8;<>><=:><>>>>>>>>>=>=>=======<<==<;<=<=<==<===<>==<====<>>=>>=>?>?8;> MC:Z:151M MD:Z:23T127 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKFKFAAFA>;>??>>>>>>>>>?>>>>><>>==8=8===>=>>>>====>>?>>>>>>>==>>>>>>>?=>>>>>?>>>>>>>>>;>3<>;>>>>>>=>9>>=>>>79:<>?<>?>;<89?<=<7=9===@@@@=->?)<>>>=)719< MC:Z:151M MD:Z:128T22 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKFKFKKFKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKFK7FKFKKKKKKFKAFKFKKKA?>??==>??????)?==>>?@?????>@?>>>>=>>=>>=>>=>>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=>>><>==<====#>=<==<====8======>?>?=<= MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#AFKFAAKF?>>>>=>=<=<=<==<======<=<====<===<==<==>>=>?>>=>>>?>>>>>=>>=>><>>=>>=>=>=>>>>>>>=>=>=>>=>>>>>==>>=>=>=>=>?>???=@??>?????@?>?=>????9>>>?2??@??><;;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKAFKFKKFAAAF7FKKKKKKKFF UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2116:13859:51377 99 5 156355338 60 151M = 156355623 436 TGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACA >?==??>>=>>==<=<==<======<=<====<===<==<====>>>>>=>>>?>>>>>=>><=><>>=>>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=????@??>?????@?>??>????:????@<@@>@@>><:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFKKAFKKKKKKFFFK UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2211:25307:54752 163 5 156355347 60 151M = 156355413 217 AGAGAGAAGAGCAGGGATCCTGGANAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCTGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGG =>?===<======<=<====<#==<==<===>>>?>>=>>>>>><>>=>>;=>=>>=>=>;>>>>>>>>>=>:>>=>><=>==>>=?><5:=169==>05>?>????>@;;=?>??>=@?@+==>A8@@><9>? MC:Z:151M MD:Z:24A73A52 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKK#KKKKKKKKKKKKKKKKKKFKKKKKKFKKKKKFFKKKKKKKKFKKKKKKKKKKKAKKKKKAFKFKKKKKKA<?>>>>>>>>>?>>>>?>>>>?:??>>>?>?>;?>>>>>?>>?>?>>>>>>>>>?>?>>??>>>=????@?>?@?>??@><>=5;?@?@>?@>@-:?@??>1:8:>@:7>??@@A@>@@=@8*8?2??>>=>>=======>==<===>=====<==<>=<=><===>=>=>>>>>>>>==>=>>=>>>>>>==>=>>:=>=>>=>>>>?>>=>>>>>?>=>>=>>>>9>???????>??>???>??>????>???>@?@A@@@@8@A>091=7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKFFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKA@==??>>>>>>>?>>>>?>>>>?>??>>>?>?>>?=6>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>?>?>=>>>>?>>>?;?>?>?>>?>?>>?@?>?>>9??????@???@?>?????;??>??@???@>@A@@A@?@@@>;9:6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKFKKKFKFKKKKKKKKKKKFFKA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2123:14235:45558 83 5 156355366 60 151M = 156355116 -401 CTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTAC ?:;<>?@?=@<>@????@?????;1???9>>>?=><6*<:;>=>=>=>>>>>>>>>=>=>>=>>>>>==>>=>=>=>=>>=>>==?>>=>>>>=?>=>>=>>>>8>>======<==<======<====<===<==<>==>==>>??=<<@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:??=>=<======>==<===>===>><=>=;>6<>=>><>;>=>>>>>>>>>=><>>=>>>>>><>>=><>=><>>=>>;:=>?>?????@-:??>?:.52:=??>?=?>??>??=?@?(7@@@?@@>?9;?A?A@*7AA8.;@90:># MC:Z:151M MD:Z:138T12 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKFK7FKKKKFKFKKKKKKKKKKKKKFKKKKKKKKKFKKFKAKKKFKKAKKF?>???>>>>>>>>>>>>>>=>?>======>>>><====>>>>>>>>>>>>>>><<>>>>>>77>-59<64<<9;==><<>>->>>/<>75;<9=>>>>>>>9>76<9>??8;-8=##### MC:Z:151M MD:Z:86A44T3A15 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFFKKKKKKAAK,A??>?@@@@@?????>@?????>??>??;1<>??>?>>=>>>>>>>>>=>=>>=><><>==>>=>===>=>>=>>>=?>>=>>>>=?>=>>=>>>>9>>>=>>==<==<======<====<===<==<>===<<=>?>>=????>;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKAKKKKKKKKKKKKKKKKFKKKKKKKF7FKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1115:23368:59798 163 5 156355374 60 151M = 156355455 232 CATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGT =;=>=?>9==>==<==<>=====<==<==:==<=>=>=>=>>>>>9>>>=><>>=9;>>>>=>>=>=>=>=>>=>=>>=>>>>>?==>>>????:>>???=?>>??>???>??>????>?<>>@>>A>@>@?@@8@?>>=@@@?<5># MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKAKKKKKKKKFKKFKKKKKKKKKAFKKKKKKKKKKKKKKAKKKKKFKKKAFKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKFKKKKKKKKKFFKKKFKFFKKKKKKKKKKKKKKKKAAFKAFKFKAKKKF:6>9>??????>>>?>?>>?=>>,.>7.>>=?>>=;->=?>;<>>>>;;>==7<>9>?;5$89/><>>>>>?>>9;=;0==>?;>>=====>>>>=>>>=?>>>?>>>>@??>:; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:###########A,AA,7,,7,<7A7,,A<,AAAA@??@)@:??:8?90(107=1=>?>?>>?=<>?>=>>(>72>;;;;/>=>>>=330>=*=<<0>=8>>>7>>;96><=<>><=:;.>->;9=>>7<4>=>==887?<2;2- MC:Z:151M MD:Z:0C9C2T7G8G2G1G115 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:7 MQ:i:60 OQ:Z:#######################################FAFKKF,FAKFA7F7,,<,9=@@?>@?@?????????@?@??@?>>:??????>?>@?>>>?>>>?>?>?>?>>?>;>>>?>>?>>9>>>><>?>>>?>><><>>>=>?>>?>>>>>>?>=>=><>?>>>?>>>>?>>???>>>? MC:Z:132M19S MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:#####FKKFFA77A????;?>?????????>?>??>??>9?>=??=>=>=>=>>=>>>=?>>=>>>>=?>=>>=><>>9>>>>>>>>=>>=>=>>>>=>>>>====<==<>===<<==>==<>====>==>>>?::= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:##A<<@?@???@?;<.>0=8?????>>>?>?>?>??<>???>>>>>:9>>=>=>=07>>>>><><;>>=:<>>>>>>>>>>====>=>?>>>><=>?>=>>==>>?<>><1;8<; MC:Z:151M MD:Z:4T11C134 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:#####################K.??=<;??>>;:??:;?????;8?>>?=>>;;>7>>>>>>>9>>>>>>>>=<>>>>>=>>9>>>>>>====>=?>>>>=>>?>>=?===>?>>>>>?>=<; MC:Z:151M MD:Z:7A0C7A1A132 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:4 MQ:i:60 OQ:Z:###################KFAA<7KA<<<7KKKKAAFFAFAKKKKKFKA,KFFF7FAFAA7KF7AKKKKKF7F??@??A@>???>??>??>?==>>?>????????>=>=>>=>>><>;=>>=>=>=>=>>=>>>=?>>=>>>>=?>=>>=>>>>9>>>>>>>>==>=>=>>==<====<===<==<>===<<==>==<>====?>>>==?=->@> MC:Z:151M MD:Z:147T3 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:9>@>;@9@;@@@@?????>?>??>?????;???=?>?>?>??=>>?=?>>=>>>>=>>=>>=>>>>6;7<>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>======>==<>=>==>=>==<>>@??>>= MC:Z:151M MD:Z:12C138 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:##KF7A;?93>>;?(&?>?(?????????=>???>>=><>><<>>>>>>>>>>=>>>>?>>>>>>>>===>>>>>>>9>>>>>>>>>>>>=======>===>=>=====>==;=<==>===>====>===>=>>????>?? MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:#KKKA7<7FF<,77AFAAA@>>>>>=>>===:>=====>6>6===<==<>>>>=>>>====>=<=>>>>>>><>=-><<:;<>>>>=>>-><>>>>>>49;;>>>%4>>>>>>>>6<>>>???;<:*>@?.5=28);-0:???=,>################ MC:Z:151M MD:Z:91A32T21T4 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:AA@>><==<==:85.>=2==9#<=<======>8><>=>;=>>>;=<=>>==4==7<>>=9>>8?<=;=>>>8<>=>>=>>><%><>>8>??>??>???><6272<6>===>>=?@??>=>?@@?@>A?@@@;=@@1=3:<*==@97;; MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AA>@>>>>>===<>=<>><>>=>=>==>====>>>=>=>>=>>>>>>>>>=>=>=<>>>=>>>>?>>=>>>>??????>????:????????>??????<@@??????@@@?@@9@@;@?<@@A/;:?=AA?AA?A/)*2AA@?;?8>? MC:Z:151M MD:Z:140T10 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFFKKKKKKKKKKF7FA?(<>>867:>=>>>>=>>>>>>=>>=>>:><8,3===>>:>;>><>>>,<>>>>>>>:<:>>>>>>?>??:..9;?:???????8.>?5=?<<).:=)7=.:./<=:7).8389@############################### MC:Z:40S111M MD:Z:37G60 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFF,AKKAA@9A@@@=@@8=;9=8>0)40??;@>?>?>??;???<=??????????>??>?>>>9>>>>>>>>>>>>>>>>>><>>>>>>>>>>>>?>>>><==>>=>?>>>>?=>>><>=>=>>>?>>??===; MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:##################AA,AAFFA7FKFKFKF<<7<<7<,,<,KKAFFFFFAKFAFKKFAKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKK<=??2<:*/8?<<:?;4;>:?????:???<<9>????>?>==>>>>>?>>?>?>>>>>>>>>?>?>=>>>>>=>;;4?>?>?>>>>?>>>?>?>?>?>>>>=>;=>==>><5>=====>>>>>>>>>=>>>>>?<>?==>=3> MC:Z:98M53S MD:Z:111 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AF7@7??>4;:?@**?;?7?????????>>=>?=????<;=>>=>=>=>:>>=>>==;>>=>>>>=?>=>>=>>=>9;>>>>>>>=>>=>>>>>>=>>>>=>=>===<>===<<==>==<>====>===<<==>===>?>=>>>??=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FFKKFF=1->=0);.&8??:2)<-72-)7)=8-).,)+).',--(-.$8-$0%*4((/;;>>>=9(>2,;9::97-(1(-5<.<(.';;8-0<>=<.0'=<-',):>=0= MC:Z:151M MD:Z:19G1A5 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:2 MQ:i:60 OQ:Z:################################FFKFFKFFF,F7??>>5?>.?;.8@5@????9?@??????>?>?==?>>;<5?>>@=37>;<8=>>>>>?>>>>>>><>=8>>?>>>>>;?>;?6*=>9<>>?><>>?>>?::>>?>>>7??>>>;?@>0>> MC:Z:151M MD:Z:17G133 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:7AFAA7AF<77A7A7,,,,,AKKKKKFA<9'1782;51)1<9?0+=8?/@?@??@;<<.16&;?>202<1?=??>?>80=*<&<90:>=>>=58<;(=2>>>=>>=>>>=>>>>>>3(0>>=><;->7:;:==>>=<:::9>>===<<==>==;<<8=<=<=;========,.959<<====269;==>9=<518=<&)).-<<=>>/9>?<=>>=%&'/4587)3*<;*-58>>68>;'69&':>6=>>??@???>;??6??<8<='&38=>>=>==<>>>>>=>>>=>>>====9=>==>>=>=>=>>>>>>>>=>>>=>>>>>=<8>>=>>>>9>?>>????>??>?????>>=?????>>>?@?@?@??2>/>9@9>'@=//?@>>9A///A?:AA>?0'2?AA####### MC:Z:151M MD:Z:150T0 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:>>9=>=>>>=>3===>>>>>>>==>>>>>>>>>>>>=8<>=>=>57>>;>>>>>?=>;;:>:?<<:?????<9???=>:???==>,=?@?@@@A@@@6'?9??@@<-<0?7@@@@AA@A:;::@A(0-.;:<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:AAF,AAFKKAKKKKKKKFAKKFKKKKKKKKKKKKKKKKKKKKKFAFKFKFK7>:>>2>=>>:>>>>>>>==:<>>=>><<>><>>>>,1.<7>>>8=>>;>>;>7?;<>><>7'1+63<;05<=-*:?>:=.7=77=>??@@@?A>=<8:%..09@8>99>A1?>@<######### MC:Z:151M MD:Z:125T17 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:???@?@=9??>=?--806=9??@=89<:??>>?@;@?@>?>>:>?>;>?>>?<;0>>>>>>?>>>?>>5>>>>>>>?=>?>>>>>>?>>?>===>>>>?>>>>?==>====?>>==>>=>>==?>>>>>?>>???>>< MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:#AAFA77,A>??>?>>>>>>>>>?>?>>?====>>>>>?>?>?>>>>?>>>?>?>?>?=>?=>>>>?>>4=3:??????@>??@???>??????@??>>??;>@?A@@>?@@<=?@@A??@@A:A=@A60.@@@>>;89# MC:Z:151M MD:Z:150C0 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFFKKKKK?==<=========<=<==<======<==<>=>=>=>><>>>>=>>>>>?<=>>=>>>79;;<>>>>>==>=>>>=>74<>>;=>??>???@???==?>9???@>???@????8@>A@?9)=<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKAKKKKKKKAKAAFKKKKKKFKKKKKKK7>?>=>>>>=>>=>=>==>=>>>>>>>>>=>=>>>>>>=>>>>?>>=>>>>>?>>>>=>>>>9>>>>>>=>>>>=>?>????????>???>???@???????@???@????@???<@>@A@@@?A@?@@@@@A@@A@AA@@A?>;868 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKAKKKKKKKKKKKKKKFKKKKKKKKKKFKKK< UQ:i:0 AS:i:151 +HK3T5CCXX160204:6:2106:15179:32461 147 5 156355407 60 151M = 156355386 -172 GGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACA ####@98@=.@>@@A<@@?A;=,@?899=?:1@@@@A@@?@?@?;??:=.?@=>>872>??????>>>><5>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>>>>?>>>>??>>>>>?>>=>=>>>>?>>?>;<9: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:####A<7A<,AKFKKAAKFAA<,KA0>?################################################################################################################################################## MC:Z:151M MD:Z:24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:A<,FF################################################################################################################################################## UQ:i:0 AS:i:24 +HM3G2CCXX160308:2:2211:25307:54752 83 5 156355413 60 151M = 156355347 -217 AAAAAAAACGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGA ?;;=>@@:$?@?@?>??>*=74??>?>?>?:??>???>@??=>>>>=?>=>>=>>>>9>>>>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>>>==>>?>>=?>>=>?===<<==>====>=<=====<====>===>==>>>>>=??=<=> MC:Z:151M MD:Z:8A142 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKKKFA7,FKFFKFKFA,FA7KKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKKKFKFFFAA UQ:i:11 AS:i:146 +HK35MCCXX160204:6:1115:7304:33164 163 5 156355416 60 151M = 156355481 216 AAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAG <>=;=??>?>>?>>>>>>>>>?>?>?>>>>?>>>?>?>?>?>>?>?>>>?>>?>>7<>>=>>?>>>????>;??87?=??@<=?@?>?;7>0>??5??A=;;,<=@@??@>@@?@??=?<9??>?>?>?3??>???>??>>=?>=>>=>>>>9>>>>>>>>=>>=>>>>>>=>>>>=>>>=>>=?>>>===>?>>=?>>>>?=>><<==>====>=<=====<====>===>=====>>>>>>?>?=A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKFKF>???==<==<===========<=>><===>>>;>>>=>>>>>?>=>>=>>>>9>>>>>>>>=>>=>>>=>>=?>??>???>???@???8>??@??>@>??<@????>??@@?@@A@?@@?@@?@8?:?A@@A@@@@A@A@AA:??9:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:@>?>?>=>>>>>>>>>>>>=>==>>>=====>>>>>>>>?>>=>>>>>>9>>>>>>><>>>>>>>>>>>>>=>=>>>=<>>?>>>>>>>?>>><>>>>@???==>?@????@??????????>*>4=::===<89==<=;='(2&1);:7==;>>>>>?9<1=<>=>.2;=>>)9>>=>>=><;=8>=>>>>=>>>3>=>?9<>=<>>???87;???77?;==?>=>???@?3;)))><;;@?A@@@A?*<(+5<=@A@@?@?>=:7= MC:Z:151M MD:Z:27A90C32 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAAFFF,F?;?>?>=>>>>==<==<=<=<=<==<====>==<=====>=<=>==>>>9=>>>;<>>=>>=>>>=>>=>>>>=>>>:=>>?>>>>=>>?>>>?=>>><>=>==>>?>>??@?>??>??>?>??@???@3>?>?>?>@@>@<@=?>197? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKFKFKFKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKAFFFAKK,A<>?>>=====<==<=<=<=<==<====>==<=>>>>?>=>>=>>>>9>>>>>>>>6<>=>>>=>>=>>>>=>>>;=<><>6=>=>>?>>>;;??@????@?>;?>=?>?=@><3>@>>@>9@?@?@@@@@@5?@>><=8? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK=B+=.??@4<.2@??A>?(*A@>>.?@>==9)79=:91?@???@????????>>?>>>>?>>>?>>>>?>>?>>>>?>>>>??>>>>=?>>>>=?>=>?>>>>=>>=>>>>>?>?>>>?=>;:< MC:Z:151M MD:Z:7T143 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:78;@A@@@@@====/85?1945<.==<4933:??;85<@??>>??>>><>>;>?>>?>>>>>>?>>=:>>>?>>>?>><=?>>?5>>>?>>>5=>>>?>:-=>?>>>>>>>=;;4.=?==>?>;==>>=>>>>????>>= MC:Z:143M8S MD:Z:0T150 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AFA7F<<7KKKKKKAFAA<7<7F77<<<7FFAKFF77<.?@@@@@@A@@?@?>@<??@8(:??????@<1>8??????>78)=>>?>>>>>>?>>?>?>>?>>>?>>>>?>/?;-?>5>>>>??>>>=>?=8>=>9>>>?>>>>>==>>>>>>?>?>;<>=.>>>?>@??>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:AA,KKKK>?:<.>=5??@8=?@???6@?@?;?@=?@?<:?????>?>??@???>>>>>>>?>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>=>>?>>>>??>>>>=>==>>>?>>>?>=======>?>==>=>>>==>>>>>?>?>???>>< MC:Z:147M4S MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:#KFFKKFA<,FF-999-95''=..(':0'446;0+6&(-7('-5.4&-1<'4.:=',(,2(<7-(0<:+(<:*7)8.-;8?<################################################################## MC:Z:10S141M PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 OQ:Z:A@')/'6:??@?;=4&:>>==>><=?299)8)>>>?>>?68=8++>;68=8,69;?>>(:+>=>>:>==>>=><>*?>?>=>;8==<=8>>>?>>=<>?>><>@@=:?> MD:Z:92T48 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:1 OQ:Z:######################KKKAKFFFF,,,,7?>><==<====/9=3=====%8<=;<====9>>>>>>;>=)=3<<>=>><>;<>=>>><.<>:/<>>?>>>?=>>=?>>>>=>>????.8>>??>??>=>??@???@???>1<>>=?>=<;;@->*637>;@@A@5>869 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA?@@>@@@?7??>????>=?>??>>>??:????????=>>=>>>>>>=>>>>=>>>=>>=?>>>==>>?>>=?>>>>?=>>==>>?>>>>?>=>>>>><>=>>>===>============<=<==<<====<=>=?>>?=>?=>>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:7AKKKFKKKKKKK>>?>?>=>>>>>=><=>===>=<==<====8========<==<>>>=>>=>>>>=>>>=>>>?>>>>=>>?>>>?=>>>?>>>>=>>?>>>>?>=>>=>>=>=>>@???@???>?>?>????>?>??>??????@A@A@@A@@@@=<;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1101:26504:57811 163 5 156355440 60 151M = 156355600 311 AGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATAAATACCTAA <:<>>?>=>>>=?>>=>==>>?>>>>>==>>9>>>>>=<>>>>>>>>>>:=>>>>=>>>=>>>?>>>;>>>?>???;>=>?>????@?@????@??????????@?@???@??????@?@;@@?@?@@;2>@@@=7=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFFFKFKKKFKKKKKKKKKKKKKKKKKKKKKAFKKFKKKKKKKAFKKKKFKKKFKKKKKKKAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAKKFKKKKA7AAFKFKKKF=@?@@A@A@A@A??@???>?@??@?>:?=<>??@???@???>>>>=>>?>>?>>>>>>?>>?>=>>?>>>?>>>>?>>?>=>=?>>>>??>>>>>?>>>>>?>>=?>>>>>>>==?===>=>==<======?>?>>?>>=??>>>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:FFF>@==AA@AA=A?=@>@@?@@@94<@>@?@@?>??>??????>>>??>???=??>@???>=>>@>>=?>>>>?>=>==>>?>>>>?>=>>>>>=>>>>?>>>?>>><>>><>>>>=>=========<=>=?==>=>=?=>>@??<;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:#FKKKAKF8>>?=><=<=2;>977:9=<====8===<===5;>==<>>=;=(;;==9>>>=<,:7<>><<>7:=4.'&787<>>>>:1=?>8).7*2<<>1=6=;2/8=??@???>=>?7??,:;???-/8*2-;??A@:@@;?@>89######### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AA<>>?>>==<=====>=<==<====8===<:==>=>>=>>>=>>=>;>>=>>>=<<>?>>>8<>>?>>>?=>;>?>>>>=>>?>>>>;>=>?><=3=>?=<==?@???>?>?>?4??>?>?:/<=@669=;@A@@A?@@>?@AA@>2>9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKAFKKKKK7FKKKKKKKKKFKKKKKKKKKKKKKKFKKKKKFF7FKKFFFFKKKKKKKKKKK7FFKKKK<,AFA77<1&*2$(($3?>5;>>(?.>8;=993>4(<(6=><3>><9&>3<.<(&7>>>8=>;:-=*=8=<=;8=<<=;>=<..>==7=<.76:<=.3.=9/49=(=,6=&:-(<=>=>==>>8=====>>>>>?=??>?; MC:Z:61M90S MD:Z:21C41T87 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:40 OQ:Z:########KKFF<,AAFKA,,((,,,7FA;>9-1(;A<:=1*:?7;;?@A@?><8>?>0*/944??>???>?><=???@>?>>*=?>>>><>=>>>>>=:;>:><>>?>;.<>;>8>?>>=?=8>=>2><><=>=>==<>7.-&==?>=>>?8>???>;>= MC:Z:151M MD:Z:10T122A17 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:##A?7;>A?A<>>3>82<:@@>?@@?@@@???>?>??>???>??>@???>>??@?=4@??>>=>>>==>=?>>>>?>=>>>>>=>>>=?=>>?>>=>>><>>>>>=>=>>==>=>><=?>>==>===><==>====>==?>??>?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAKKK?=?>?>>?>=>=<====8========<==<===<==<====<=>><>>>?>>>>=>>?>>>?=>>>?>>>>==>?>>>>?>#4==>>=>===?>>>?>>>=>=>=>>>>>?>??==<>>@?@??@???@>=?@?@@@A?@A?9=<;A MC:Z:151M MD:Z:82A68 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKK,7FKKKKKKAFKKKFKKKKKKKKKKKKFKKKKKFFFFAKKAKKKKKKKKKKKFAKKFKFKKFKK7FKK< UQ:i:11 AS:i:146 +HM3G2CCXX160308:2:1113:29751:2047 99 5 156355454 60 151M = 156355849 481 GAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATACAGGAGGGATGTACAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATGATAAATACCTAAGATAATAATTAATG >=>>=?><99<><5===8;=,9;===<==<===<==':;=5)==><.,88%19/<;=?>>=?=6<>?>>><928<;>>>;>=>>=<>=6/;:7>:/?>>=;9=<9>>8>=4:<50)829,:>5>-8>7;?/6'626<;*/7??A=/?;;;; MC:Z:65S86M MD:Z:36C13A73A13C12 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKF@??>??????>????>?>>=>>=?>>>==>>?>>=?>>>>?>>>==>>?>>>>?>=>>>>>=>>>>?>>>?>>>>>>>>>=>><=<==<<====<=>=>==>===>===>====>>>?>>>@??<=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AKKKKFFAKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2221:26098:66390 147 5 156355455 60 151M = 156355316 -290 AGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATNAATACCTAAGCTAATAATTAATGA @8;==>@9@@@@@?<:>@>@@@@@???>??????>????>???>??>>?>7?<>?>>>><>>>==>>?>>>>?>=>><>>=>>=>?>>>6>>>>>>><>>>>=>=>;==>>>=<=>=>===#==;===>====>==>==>@??;<= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:7KAFKFA<@>=>>=>===8========<==<===<==<====<===<=>>><=>>?>>>?=>>>?>>>>=>>;>>=>?>=>>=>>=>=>>?>>>?>>>=>=>=>>>>=>*????>?@???@????A@@A<@>:>=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKAKFKKKKFKKKKKKKKKKKKKKKKKKAKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,AKFKKKKKKKKKFKKKKKFKKKKKKKKKKKKKFF7@A>@<<@???>>@=:@4<=??;;>5@?<=?@???@????@>>;;8=>;>>>>>?>>>>>?>>=?>?>>>=>>7;=;.,>?>>>?>?>:>>?>>>>?>?>>>+>>?;>??>?>??>>?>>>?>>>>>><>>>>?>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:FKFA<77>=<===<==<====<===<===>====<>>?>>>?=>>>?>>>>=>>?>>>>?>=>>=>>=>=>>?>>><>>>=>=>=>>>>=>=>??>????>?@?@?>=???@>??@????@??@:??A@@@?@?@@@?@?@A@@@@@=;:8: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKFKKAKFKKKKKKFKKKKKKKKKKKKKKFKKA UQ:i:0 AS:i:151 +HK35NCCXX160204:1:2120:30705:65335 147 7 4490610 60 151M = 4490477 -284 TCTCTGGGATCAAGCGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGA #8=:>?@@@@@AA@;@<@@@?>@@?@@@@@@@@?>?@???@@???????????@??@?:?==??=??=?=>?>>>??>>?>>>>?>>>>>??>??>>>>>>>?>=>>>>>?>?>>>>>>>>>>>>>>=>==>>=><>>>>>>>=>??;=;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:#F?=>?????????????>?>==<=>>>>>>>=<='=><>>>>>=>>>><>>?>>>?>>>>?>>>>>?>=?>>>=>>>=>===>=>>>==<============<<=<=====<======>=>>>=?>?=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:?????@?????????????>>?>9>>>>>>>>>>>>>>>>?>>>?>>>>?>>>>>?>>?>>>>>>>>>>=>>>>>>=====>>===>=>===<=<=====<=======<======>=>>=???=>?>>>>=?>>>>>>>?>=>>>>>>>>>>>>>?>9>>>>>>>>>>>?><>??<>>?>>>>>>>>>>@??????8>????<<<@??@@????????>;?6???@@?=;97? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAKFKKKKKFKKKKKKKKKKKK=>:?=:7=5<=;=51===9<=53;===.:8=5:>>=;>=;0>;>>=7&=<'=>8;?<8//<79<:>>><7:<=>=<>><8=;):==>><>;>>?>?>=9>=???>?;==??=?%09;>0;>>>*2*9@?8>@=9@<;29;>######## MC:Z:151M MD:Z:49A65T35 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:0/)/..'.(<:<<=>2'8=38=>=<3%(<%,0><(*$+-79>--;(,,,8-7<98(2($$0(($1+%;:3;>><:<>####################################################################### MC:Z:19S132M MD:Z:5A3G29T3T4T9A2G0T3A1T20G1T3A3T12T15G2T5A1T5G5 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:20 MQ:i:60 OQ:Z:,AF,,,<7,,,,AFFAKF7,7FAKKKKF7,,A,,?=>?@>>>>>><<==<====><8==<==<==<=<=====>===?>=>>?>>>>>?>>?>>>>>>>=>:<>>=>><=>>>>>>>>>>>>>>>=>=<=>=>=>>>>>>>=>????>?>??>????=?>???3*>?@@=@?@<=;9;<@A(AA>AA?@?@AAAA@@:@A?@>=?@:;>@@@@@A@@@@?>>>@?>???@??@?=??>??=>?>?????>??>>>>>9>><>>>4>>>=>>>=>=>>>>>>>=>>>>>>>=>=6==>=>>>>>>>=>>>=>===>>>>>>??>=8; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:60 OQ:Z:A<:=>?@@@@?@@@????@?:??>?><>?@=>>>?><<>>?>>?>>>>>>>=>>=>>=8>?>>;><><>>>>>>>>>===>>>>>=<>===========<====<;:========9:=====5=====>>>>>??>;@? MC:Z:60M91S MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:0 MQ:i:24 OQ:Z:<?>8.)6;1/184<:?=>967<97).)7?==?<<7@>>>>=,>?7?=>>?=>>>>>>>>>>;>>>>>>9;;>>>>>>>>>>>;=;5;,=6<,8)?>>>><2==>>;>>>>>>====8==?>>=====>>>=>>>>>>>>>?=5>;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:#####KKF<,,<@?@@@@@@:0@?:??????????>>????@???@?????>>>>>?>=?>>>=>>>=>==>>>>>?>>=>=>>>>>>>>>>==>=>>>>==>>>>>>>=>>>==<===><>=====<=====<======<====>>=>>>?>?<@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:??>=>===>==?<8==<==<==<=<==>>>?>>>?>>>>?>>>>>?>>5>>>>>>>=>>=>>>>>?>>>>>?>?????????>?>???>?>???????>?????>?>??>?@?@@A?@@@@@?@>@@@@@@@AAA@@AAA@A@=>86? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKFKFAFKFKKAKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:8:2202:10805:40530 99 7 4490671 60 151M = 4490699 179 ACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCT 99;?>>>?>>>??>>>?>>>>>=====>>>>>>>>====;,98?>>?=7>>>>>>>>>>=?>>>>==<>>>=>>>>>>>?>>>>>>>>>>?>>?>>>?>9>??@=<1->>????@??==>?????>;9>>=@@@>@?;@1%+/768:# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:?@@A<.<7/=96,.3-/(<9=>/88-5/9<-<><7??9>><(7?=>>;2>>;;;<-3>><87->?628->>91,959:>>>;>>>>>>9>>>>:<>>;>575;71;<<+579- MC:Z:151M MD:Z:14T2T9T123 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:3 MQ:i:60 OQ:Z:##A7AA>1AA8<>@A@@A@@@@?;?@@@A@?@@@@?@@7>?>>?@???@=?>????????????>>?>??9??>??>?>>>=>>>=>=>=>>=>>>>>>=>>>>>=>>>>>>=>>>>>>=>>===>===<><======8<=====>?>?><= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:0 MQ:i:60 OQ:Z:##KAAA,FF=8AAAA@>?A@?A/?/A@?A@@@;>??>?>>?????@>>;????????????>>?>>=6<>=<==<>>>=>>>=>=>=>>=>>>>>>=>>>;<=>>>>>>=>>>>>>==>>==>===<=<=<====8<======><=?9>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:##A,A?>@???????@?@?????>?>>>>>>>>>>>>>>>>>>?>>>>>>>?>>>>>>>>>>>>=>>>?>;>>>>>>>?>>>>>>====>>>?=>>=======>>9>>>>>>>>>>>>>?>???<>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:7AFFKFKKKKKFKKKKKKKKKKKFKKKAFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2223:17198:11418 163 7 4490683 60 151M = 4490785 253 GCTAATTATTTTATTTTTAGTAGGCTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTT =;==>=>>====7=====>==>==,9<;;7=;<=>>>=?>>>>>>>7>>=<>>>>=>=;<>=>=>>>>>><<>8==>=>=>>=>>>>>>=>>???>???36<=??>=??>>>?>??>??>?><=>:<@;???>@?@?>A?>:@@??>9:8? MC:Z:151M MD:Z:24G126 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFAFKFKKKAKKKKKKKKKKK77FAAAKFKKKKKFKKKKKKKKAKKFFKKKKKKKFFKKKKKKKKKK?@@@>>A>@?;>@???@??@@?@??????????@????@>>>>5?>>>?>>>?>>>?>>>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>==>>9>>>>?>>>>?>>>?>>>@>?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:KFAFFKFKFAAKAKF@>=A<>9.@@@A@AA?@@?@@@A@@?@????>@??????????>>=?>>??>>>>>>>>>>>=>><>>>>>>>?>>>>>>>>>>>>>?>>>>>>>==>>>9>>>>==>>>>>>>?>>>@>>=>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:FA7<7A>?@>@:A@?A@?>@@@<=@@??>>?????@??<>????????>??>>?=???:?9>>>>>>>=>>>=>=>=>>;>>>>>>=>>>>><>>>>>>=>>>>7>=>>>>>>=>;=>==<====8<=#=======<====<==<=>?>==?, MC:Z:151M MD:Z:126G24 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:KKKAFFKFF>>?@?>?>>>>>??>??>>>>>>>?>>>?>>????>>>>>>>>>>?>>>>?>>??>?>>>?>>>?>>>=>>>>>>?>>?>>>?>>?>?>?@@@?==@?=?>?????@????????=??28????@?@@@A2@7?:@>?>@@?><;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKFKKFKKKKKKKKKKKKFFKKFKFKKKKKKFKKKKKKKFKK7FKKKKKKKKKK7F7FAFAFAKKKFFAFK UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2124:30391:27521 99 7 4490689 60 151M = 4490851 313 TATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAA >?>????>>>>>>==>=======<==<=====>===============><=<==><=<=>>>>>>=>>>>>=>=>>=>>>>>>=>>>>>=>>>>>>;>>>>>><>>>>>>=<>??=?>??>?:????@????@>?>=@?@@?@>/>?<;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKFKFKKKKKFKKKKKKKKKKKKKKKFKKKKFFF;;=:?@@?@>@?@???>???>?>>?????@??>???????>>>>>==>=>>>>>=>>>>>>>=>>>=>=>=>>=>>>>>>=>>>>>=>>>>>>=>>>>>>=>>=>>=<==<=<=<====8<=========<====<===>>>>????>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:5:1119:17523:28576 147 7 4490692 60 12S139M = 4490536 -295 CCTGGCTATTTATTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGA ############A>-./>@?=A@@A@@@@@@@A@@>A@@A@=@<=@@=?>8??@????@????=@???=???@?>-@????>?@>4=6=7=8>?<78;>>>>>?>>>?>>>>>=>>>?>>>>>>>>>>>>9>>>>?>>>>?>>>?=>?>;< MC:Z:151M MD:Z:139 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:############KA,,,??@AA@@@@>@?>@@?@??@@?@??????????@????@????=@??>?>>>?>>>?>>>>>>?>>?>>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>>>9>>>>?====>>>>?>>>>>>>>>?>>>>>@@?>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:0 MQ:i:60 OQ:Z:7AA,FF@A57A>@@@7>:=/=1@??@??@??;>=??>??@>???@????;@=?>?>?>?>>>?>=>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>>>9>>>>?>>>>?>>>?>>>?>>>>>?>>>>>@??>@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:#A7FKKF<7FFKKF7FA<7A7KKKKFKKKFFFFKKFKKKFKKKKKKKKAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:2218:31223:52309 147 7 4490697 60 75S76M = 4490207 -566 GGCGCACCTCCTGCCTTGGCCTGCAGAGTCGCTGTGAGCACCGGTGCGCGCCACCACAGTGGCGGATTGTTGTGCTTTTAGTAGGGTTGGAGTGCTGCTAAGGTGCCCATGCTGGTCTCACACTCCAGGGCTCGAGTGATCGTCCTGCCTC ###########################################################################>;/>5>?>>>;;0;9/68&*>=*<::&$03*3*.0=1><6/:=+-);2>98=%9=1/%'9;/=>9,%/**0::606 MC:Z:151M MD:Z:18C8T17A12A7C9 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:5 MQ:i:60 OQ:Z:###########################################################################A<,F7KKKKKFA,FA,A7,,FF,A<7,(,<,7,,,F7KFA,AF7,,<7FA;?@;@>?<*?????@??>?=??????????>>?=>>>>>=>>>>>>>=>>>=>=>=>>=>>>>>>=>?>>>=>>>>>>=>>=>>>=>>>>>>=>>===><====8<;========<====<==<====>==>>>?>>??<=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKFFKKAKKKF,KKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:8:2202:10805:40530 147 7 4490699 60 151M = 4490671 -179 TTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTAT =<8:>@<@@@=9:AAA>AA>8@A;:.>@@@@@@@@@3@@@@@@>7=8??@???????@???>??????>??????>????>??>?:>>>>>>>>>>>>?>>>>>>>>>>>>9>>>>>>>>==>>>?>>>?=====?>>=>=?>>>@< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:KAKKKKFKKKF<@@@??>>?????@??>????????????>>?>>>>>>=>>><>=>=>>>=>=>=>>=>>>>>>=>>=>>=>>>>>>=>>=>>>=>>>>>>=>>=><>=====8<=========<====<==<====>===>>?>>>?<><@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKAAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:6:1206:11941:31986 99 7 4490700 60 151M = 4490828 279 TAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATG =>=>??>>>>>><==<=====>=============>=><><==>=>=>>>>>>>=>=>>>=>=>>=>>>>>>=>>=>>=>>>>>>>>>>>>>=>>>>>>=>>>>=>=??>?:????????=?=????>??>?.@?@@@@:@A@@@?>=:## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKK,FKKKKK7FKKKKKFFF## UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:2118:19350:53715 99 7 4490703 60 151M = 4491013 461 TAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTC >;>???>>>=>><=====>================<=<===<=<>>=>>>>=>>>>>=>=>>=>>>>>>=>>>>>=<>>>>>>>>>>>>=>>>>>>=>>>>=>=>>=>9>?????????>??=????@?????A@@@=?@@>=;<; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFKKKKKKKKKKKKFAKKKKKFA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:2118:3234:9730 163 7 4490704 60 151M = 4490953 400 AGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCACGGAAGATTTTAAAAATAAAAGTTATGTTCC ;:<=>?>>=>-==>=>=?>>=>>>>>>>=>===99>>><>>>>>>>>>>>>>>>>>9.=8>>>>=><:>>:5>>?==??>?=???>??>8.;>??>>?>*;.;>>=?6>=:>@=4;;1=:''+@?4@/9/>;0@A@=BA############ MC:Z:151M MD:Z:120A30 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKK,FKFKKKKKKKFKKKKKKKKKKK?==>??>>??>?>>>>>>>>>>?>>>>?>>>>>?>>>?>>>?>>>?>>>>>>?>>?>>>?>>?>>?>>>>>>?>>>?>>>>>>>>>?>>>>>>>>>>??:????@????@???@???@?????@?????@@@@A@@A@@@@@@A?7<98= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKK?@@@@@?@??????=????>>?>???=?>???????=>>>=>=>=>>=>>9>>><>>>=>=>>=>>>=>>>>>>=>>>>>>=>>=>=<=>>>>7=>9,=;>><;<====<=;:===<5=====>====<=>==<>=>>><>?=;=; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKAKKKKKKKKKKKKKKKKFKFKFFKAKKKFKKKFFKKKFKKKKKKFKKKKKKKKKKKKKKKKAKKKKKFKKA,FFKKAAKKKKKKK7AKKKF3?;.<6@@?@?=>>?5:=0/'.6>4&0.9(=??@???@???:;;-?=?=8??>1;>&(,'9>>870>>>89>=>?>>4?>>??>>>8>>>;>=;?>??><>>>(>->8>>68/?<<< MC:Z:151M MD:Z:5A5C15A2C23C83C12 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:6 MQ:i:60 OQ:Z:##A7A,,AA7,,,<<,,AA,,7<,A,A,<,,A::<>?@A@@@@@@???>?>?>?7>5?>???????>???????>>>=>>>>>>=>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>>>>=>>>>9>>>>>>>===<==>>===>=>==>==;==>======>====<=====>>>>>?>?>?? MC:Z:151M MD:Z:136C14 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:FKFKKKKFKKKKKKKKKFKKKKF7A7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKK52??>??@?<<;;<>>>>:989<)/;>>>>>?>>=;7)>>8>>>9>;<<>>3><0=93=>>><)6>>>;===>>?>>>?:>>=>-><>;=>>==6>;>=>>><>?=?>9= MC:Z:107M44S MD:Z:1G16A110C21 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:3 MQ:i:60 OQ:Z:>>>>=>>>>>=>>>><>>>>>>>>=>>>>>>=;>>>=>=>>=>9>><>>>>>>>=????>??>?>?=????>>?:;??@>@@@?@@@@@@>@@@39;5<> MC:Z:151M MD:Z:123C24C2 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKFKKKKKFKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAKKKKKKFAFKK>:?=>/;(?@?@:6'?>???>?=?????>>>>??8>>=>>=>>>=><=:<>=>>>>>>=>>=>=>=>>>>9=>>>>>>>>>=>>>>=>><==>=?=>>=>?=>==<=>==<=<====<<=<===<==>>>>>>>==??>=@> MC:Z:44S24M83S MD:Z:3T119C27 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:2 MQ:i:0 OQ:Z:#####KK>@>>??>?>>;=<>>==>>?>=;>>>?>>?>>>?>>/=>;8<>>???>>>?>>=>6>>?>=-8??=?55?7394>==89>>>??>?@:??.)=-6<@<=6>8<79;,87?@?<*.8/8.81@>/888:@####### MC:Z:151M MD:Z:120C7T19A2 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKAFFKKAFKFKKFAKKKKKKKKKKKKK7FK>:@A@>@A>@@A@@??=?@?9@???@???=498?????@???@????>>>>>?>>>>>>>>>>>>9>>>=99>>>?>>>?>>>?>>>>>?>>>>>?>>>?>>?>>>>>>=7>>>>>><>>>>;>>>>>?>7>>>>?>>?@==?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:#KKKFFAAKKKFKKAKKKKKKKAKKFAKKKKKFKFF>>>>===<=======<==<======<=====<==========>>>=>>>>>>=>>>>=>=>>=>9>>>>>>5<>>=>>>>=>>=>>>>?>>>>>?>>>>>>?>>??>??????>@??9??@?@@@@A@??<<?>?>??>??????>?????>????>>=>>>>>>=>>>>>>=>>=>=>=>>>>9=>>>>>>>>>=>>>>=>>=>>>>?>>>>>?>>>><>?==<=<====<==<===<=========<<====>=>?>>>?>>A> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HTL2KCCXX160412:5:1114:6289:10345 83 7 4490741 60 151M = 4490372 -520 AAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAG =><=?<@A<@@@?@???@??>???????????>???>???????>>>>>>>>>>>>>>>>>>>>=>>>>9>>>>>>>>>>=>>>>>>>>>>>>?>>>>>?======?>=====>====================<=====>>?>>??>>@? MC:Z:151M MD:Z:113C37 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:AA<>???>=>>>>=<=<==<======<=====<===<========><=>>>>><>>>>=>=>>=>9>>>>>>>>>>=>>>><>>=>>>>?>>>>>?>>>>=>?>>;>=>>>?>??=>??>???=?>???>>??>??;?@@@?@6?@??=9>?@;@@@@>?????3???>??>?=????>??????>>>=>=:=>>>>9=>>>>>>>>>=>>>>=>>=>>>>?>>>>>?>>>>=>?=55>=>>>>==>=>=><=========<<=====<=>==<=<==<==<===>=>>>?>?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:KKKKAAFFAKKKFKKKKKF7KKFFKKKKFKKKKKKKKKKKKFKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF@6<=@1;@4?????;<=????=>>=?=>?=>?>?>?=>>>>9=>>>>><>>>:;=>>=>>=>>>>?>>>>>?>>>>=>?>>=>=>>>>=>>=>>>=>>>=>>===<<=====<=8==<=<==<==<==<=<===>>>>>>?=>=?> MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#KKKFF7AFA7>>-8;@7@=@@@@:><89:??@?????8?>@>@@;???9)??>?>???@???@>>>??@??>>?>?>;?>>@?>>>>>>>>>>>>>>>>>>>>>>>>?>>>>>>?>>??>>?>>?>?>>>>>>>>>>?==>>>>>>?==;>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:#KKF7A?@@>@@@@@?;???>??????>??>?>6>????8=>>><<>>>>=<>>>=>>=>>>>?>>>>>?>>>>=>?>>=>=>>>>=>>=>>>=>>>>>>>>========<=>==<=<==<==<==<=<========>>>==>?>?=@> MC:Z:151M MD:Z:85C65 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AF>>>>?>>>?>>>>=>>>=?>>>>>>>>>>:<6>>>;<>>>>?>>>?>>>?>5+8>@????,:?:>@=>?7????@,5<7-=<;4>=79?(;'.-3;<>################ MC:Z:151M MD:Z:81C68T0 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKKFFFKKKFAKKKKKKKKKKKKKK7,?<9:A9<<@3;;<@4=@@@>?:?4*4?>?>>>=<:?>4==)8<>>=>><>>>>=>;>>=>=>>:>=>;9<9>==>;>>>>>>=<=<<>>==;>7=>=<><==<==(<4<<;=8======<<=<===>?=43;= MC:Z:151M MD:Z:80C70 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:77<@??<@??=@@@?????@???@?@@???@?>@??????@@??>?>??>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>??>?=<=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:#######FA77,KFAAAKKKFFKKF<7<7FFKFFF7,AA7KKKKFAKKKAKKFAKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1111:14154:56458 147 7 4490781 60 151M = 4490402 -530 AAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCT ??::>?@@@@@@?>?@@?@@?@?@?????:>=>???9???>??>9>??>????<==>???>>>>=>7>>=>=>>>>=>>=>>>=>>><>;=<>==>>>>><=?>>=>=>>=>>=>>==<===========<===<=<==>=<===@>?=>= MC:Z:151M MD:Z:73C77 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FAFFKFKKKKKFFFFFKKKKKKKFKKKKKKKFFKKKAKKFKKKFAKKKKKKKKFAFFKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKFKFFAKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYN2CCXX160123:1:1108:11140:31054 147 7 4490782 60 151M = 4490536 -397 AAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTT ##49<7=+@A??A@@B@@AA@A@?@A@@9@?<6A@@@@??;@@@@@A@?@@@@?????@???@?@@???@??@??????@@???????>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>??>>>>??==<== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:##AKF<<,KKAAKFKKKKKKFKFAKKKKFKFA<=;*0*-??>9=9:>@=5???>?>?9;9?>????@<;8>?@??<==>?>>==1>>>>:><6<>>5>>>><<9<>===><>==>?>>=>=>>=>7=>==>=>>=1=======<===<=<=<>=<8;<><=>?>;@@@<>??=?6>=:)>?>>>=>>>>?>>>>>?>><;=>?>>=>=>=>7=>>=>>>=>>>>=<>=>==><<=>=>?>><>==>===<=;<=<===><5=<===<===<=<==>=<=>=?>>7?>=;?> MC:Z:151M MD:Z:69C80C0 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:2 MQ:i:60 OQ:Z:?@@@@A@@@@@?@?????:????>?;??????@>>?>>?>>>>>;>>>;>>>>=>>>>>>>>>>?:>>>=>?>>??>>?>>?>?>>>>===>>>?>>>>>==>=>=>>=>>?>==>>>=>>>>?=?>;= MC:Z:151M MD:Z:67C80C2 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:2 MQ:i:60 OQ:Z:<>???>>>=>>>>==<==<=8==========<====>=><>>=>?=>=>=>=>>>>>?>>>>=>>>>=>>>>>>=>>>>>=>>>>=>>=>>=>?>>=>=>>=>>=>?=>>><>????=???>>??>?>??@???@@@@@@>7<9>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKFKKKKKFKKKKKKKKKKKKKKFKKKAKKFKKKFKFKKAF UQ:i:0 AS:i:151 +HK35NCCXX160204:2:2218:17777:18010 147 7 4490792 60 151M = 4490536 -407 ATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATA :68;>@=@AAA=8@@A@@:@@;8A@@@;?@@@A@@@A@????@?????@???@??@?????@?????????????>??>???><>>>>?>>>?>>?>>?>?>>>>>?>>>>>>>>>>>>>>?>>?>>>??>>>>?>>>?>>>>>>??;=>< MC:Z:151M MD:Z:62C80C7 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:2 MQ:i:60 OQ:Z:7KKKKFAKKKKA7?@@?@@@?7@@?9?@@?@>:??>>????>??>>*??@?>9??@????>?@??>?=>>>>=>>==<>=>=>9;>>>===>>>>>=>=>=>>=>>=<>3====>=>>>>>>=<===<=<==>=<==<>======<=8==???;@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AKKKKKKKKKKKK7KKAFKKKAKFAKKFKKAKKKKKFA,KKKKF7KKKKKKKKKKKKKKKKKKKKKKKFFKKKFKAAKKKFKKKKKKKKFKKKKKKKKKKKKAK7FKFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFAA UQ:i:0 AS:i:151 +HM3G2CCXX160308:2:1112:27407:17149 83 7 4490794 60 151M = 4490450 -495 TGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGA =;;=9?@=??@?>@?=9<=>==:$???>????>??>????<>>>:>?>>>>=>?=>=>=>>>;=>>=>><=>>>>>>>>=:==:8>>==?>>=>=>=:>>==.===>==========<<==<=<==>=<==<>========9>=1>?=>:> MC:Z:132M19S MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:FKKK?>>9=>><9=>>?>9>44*4>>>>,><>>?,4+,=>4=>?>>>(=6>,8>6<8/>6>;969;?5?@?><==>@7>@?@=>?<>??=:->9???????7@@??######################################### MC:Z:151M MD:Z:51T72T12T4A8 PG:Z:MarkDuplicates.19 RG:Z:HK3T5.2 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKK?+?;%A@A@AAB@?@@?@@?:8@@@@:A@@?@>?@?@>@>????>??>???>?????????>>?????>???>=>=>>=>>=>>>>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>====<===<===>=<>>=>=>=?>???>?: MC:Z:151M MD:Z:46C80C23 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:##AFKF,A7(KFKKKKFKKKKKFA<77KKKF7KKKKKKKKKFKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFA< UQ:i:84 AS:i:141 +HJYFJCCXX160204:6:2204:12236:71699 147 7 4490810 60 151M = 4490569 -392 CGTGCCTGGCCTCAAGGAAGATTGTAAAAATAAAAGTTATGTTCTTGGNTGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGG 75;9=?@8(*@?=@A;?@@>@=/&A@@@@@A@@@@>?@??>?>???=?#?;???>?????????>>>??>>=>?>>=>=>>=>>=>>=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>>>=><>>=<=>=>=9=>=====?==?>??>9< MC:Z:151M MD:Z:23T20C3A76C25 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:FF;?9<599(-->97>*<->))?=>7<=0),96<67=5/%((/39.)-//1>5<>4>2.8)+<7;4-=-,0)0<+5<>5-3+7+>>(5>+5;<.*+*50; MC:Z:151M MD:Z:7T7G11A2A1T7C0T3T16C37T11T24T13 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:12 MQ:i:60 OQ:Z:##############################################A,7KKFF;?>>?>>>>>?>>>>>?>>=>>>?>>>>>?>>>>>><;>>>6>>>>;>>?==>>:>?>>??>>?>>?>?>>>>>?>>>>?><><>>>>;???=><<@@;=?=>;=8=,5=?:>?????)=-:;77.7@?;,.<-)((7?;6773 MC:Z:151M MD:Z:36C80C33 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:AAFAFKAKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKFAFKK7FKKKFKKKFFKKFKKKKKKKKKFKKKKKKKKKKKKKKKKFKFKKKFFFKKFFAAKKAFKFFFFAA,+/89<->?6+4;(-,9,*5+(''$58+5=5>5).77,($&,(4-,9>';&>,(,1-,&:@?;@@'''6:=:=).:7)/)>>>98??&=############################################################ MC:Z:151M MD:Z:15T7A0A0A13A0T1T1T23A30A1T8C5C9T5T15C2 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:16 MQ:i:60 OQ:Z:AA<,,>@@?98-.;6))>:07(2>;:0?<9=?>>=6@??=8<867659=<9/>>>>>>=>>;>>::>>??>>>9>>4>>??>>?>>>>>>>>?>>>>>==7=?=>6;= MC:Z:151M MD:Z:2T6A12A9T18A4T94 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:6 MQ:i:60 OQ:Z:######################################AAAKKF7<,,<<,,F<,<,7FAA,KA>?>??><>=>=>>==>=>======>===>==>>>==>>>>>=>>>>>;>>>>0><5>>=>?>=>>=>>=>><;(<<>>??3<>>>>>??>????@<==??6399?9=@/:<9@@@@@@/8?::@0@:0>??0+5>AB6@@?7;5>< MC:Z:151M MD:Z:32C80C37 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFFFKAKKKKKKKKFKKKKKKKKKKKKKKAFKKKFKKKKKKKKKKKFFFKF7FAAKKKKKKFFFKKKKKKAAFK7,AAFFKK?@A>>BAA><@?>?;?@@@@@@?@@?@@@@@?????????????@??????@??@@??@??@?@????>@>>>?>>?>>>??>>>>?>>>?>=>>9>>>>>??>>?>>>>>?>>?>>>>>>>?>>>>9>?>><<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:KKKKKKKF<>>>=>>>====?======>=>>=<>>>>=>>>>>>=7>>>>=>>>>=>>=>>=>?>>=>=>>=>>=:==>=>>>>>>>?>>>>>????;><@??>>-<6<=???>>:?@<@@@@??A?@?@@><@@A@=@@A?@555?:<9=:75? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7KKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKFKKKFK?>???>>>?>>==>>=>====>====<====<======<====>=>>>>=>>=>>=>?>>=>=>>=>>=>>=>=>>>>>>>>>>>==>>=>=>>?>>>>>?=>>>?>=<>?>???@?>?@??=??@??@????@@@@=@@@;@@?>;::? MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:A?>>>?>>>>>>>>>>=>?>>>>=?>=>>><>=>>>>>>>>>>>>>>>>>>>>>?>>>>>>>>>><>>>@?>???>????????@??????@?????@???@==;?9=??@@A>@@A@?@@@A@>>@@@7=>=9??@;=86= MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFAFAFKKKFKFKFKKKKKKKKAAKKF???>>>?>====>======>=========<====>=====>>======>>>>>=>?>>=>=>>=>>=>>>>>>>>>>>>>>>>=>>>=>>>>?>>>>>?>>>>>?>???>???@?>?@????>@??@?@?<8??@@@@@;@@?>=;:> MC:Z:151M MD:Z:28C80C41 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKFKFFA78;>?AAAAAAAAA:A?@A@@?@?@@@@>@@?@@?>@???>>???>>??>??>?@??>?>??>??=??=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>>>>>>=>>>=>>>?>=>?>>>=>>>>>==>=========8=>===>>>>;< MC:Z:151M MD:Z:26C80C43 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:7FKKFKKKKKAFFKF7FKKKKKKFKKKKKFFKKFFKKFKKKFAKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:84 AS:i:141 +HM3G2CCXX160308:2:1102:13656:9115 147 7 4490830 60 151M = 4490646 -335 ATTTTATAAATAAAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCACCATGACTGAGAATAGTGGTACCCCTGACGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCAT ##############@=?:=>89*-@?:=>183??;??=??>=?>7)<<;??=:'?;=19;>:=>9><1>=>=>=:<>>;9>:5;=6<;;;+>989>=>>=?><>/>====:==3877===<<==:=77===<=>?+?0?= MC:Z:151M MD:Z:6A69C24T49 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:3 MQ:i:60 OQ:Z:##############FFFA>>???>>>>?>>>?<>?>>>>>?>>>>>>>>>>>>>>>>>>>?>>>>>>?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?>>?>>>>>??>?@???????<>?@9??@?????@??@???????@??::8@:A@@@@@>;9:> MC:Z:151M MD:Z:23C80C46 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKKKKKKKKKKKKAFKKAKKKFKKKKKKKKKKKKKKKKKKAAFKAKKKKKFKKKFF UQ:i:84 AS:i:141 +HK3T5CCXX160204:6:2219:27032:43571 99 7 4490839 60 151M = 4491059 362 ATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGCGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAACGGGCTGGGCGGCTGACGCCCATTGTTTGGGA <>:???>>>>>>>>>>;>>====;9;>======.>>;<>>:>>792;>41>>>>>;-;<;>>>>>>>)8<>>;-;>*8)<<-<<>>>6>:>(=8.<9<>9>99?>???>>?>>>>>>>>>>>=>>>======>>>>=====>>>>>?>>>>>>>>>>>>>>?>>>>>>>>>>>>=>?>>>>>>?>>>>>?>>>?>>>>9>>>>=?>>>?????>@??@??????????=>:??@??<=@???@@@>@?>:8:8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKAKKFFKKKKKKFFKKKKKKKAFFKFFF< UQ:i:0 AS:i:151 +HTL2KCCXX160412:6:2214:9942:25991 163 7 4490842 60 151M = 4491280 587 AAAGTTATGTTCCTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGACGGAAATAGATAAAAATAATAAGTGGGCTGGGCGGCTGACCGCCATTGTCTGGGACAG =>=?>??====<====><>==>=<=>>==<>>>==>>=>><;>:>0=>>>=>><<>0<=>>>>>;>3>>2;=:>>>>=?<><>??@>4?>?:..?;./>/:///>9>@+0:=??:9-1?A################### MC:Z:116M2I33M MD:Z:115A18T7T7T0 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:4 MQ:i:60 OQ:Z:AAAFFKKFKKKKKKKKFAKFKKKKKKKKKKKKFFKKKKKKAAFAK,FFFKKKKAAK7AFKKKKKFK>@>>@<@@8=>8*>?=1>?????=9??>>>?=??>??>>=>;>>1>>=>>=>=>>>>>>>>>>>=>>>=>=>>?>=>>=?>=>>>;=<9>=>>>?>=<8==>==>==>====3=======7===;<1=7=7;>:>=>=<2?>>>@> MC:Z:151M MD:Z:21T129 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:##KKKFKFKKAKF?>>>?>>7>>=>>>>>>>>>>>>?>>>>>>?>:??>>?>>?>?>>:>8?>>>>?=<7?=@??<@?=??:?????@@??@???@==?@A@@@:88?@?>;?->;A?@@8A*<>@@;>=?9<@A@@?<.@?@?@7><>4=?@@@@@?@?>7???@??@@??@??@?@?>??>@????@??<?>>?>>>??>>>>?>>>??>>>>>>>>>??>>?>>>>>?>>?>>>>>>>?>>>>9>?=>9<= MC:Z:128M23S MD:Z:8C80C39 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:FA,7A,7AAFAAAA<,AKKF7KFAKKKFAA,KKKFF>>>?>?>>>>>>>>>>>?>>===>??>>>?>>?>>?>>>?>??=<>>?>>?>>???>>>>>>>>>?>?>?=>>>>?>>>?>>??>>>?@?@@>?@@@@@?@@?@>@???>?@??:?:>@0;@@@A@@99>@A=>?@@@@@:=:97? MC:Z:22S129M MD:Z:7C80C39 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKFKKKKFKKKKAKKFK,AKKKKKKAFFKKA>=>>>>?>>=>>===;>>==>=>=>=<>>>>>>>>?===;9>>>>>>>>>>9>>>;>>>>>>>>>?>>>>>><;>7>9?>>>?=;>>92<>>>?>=6>????>@??=??>83:@@@@@###### MC:Z:151M MD:Z:147T3 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKKKKAFKKKFKKKKKKKKKKKKKKKFAFKAKAKKKKKFFKKK??>==>>>><=>>>?>>>;8$76<>=?<>?=>??=,<?>;?>>>=>???>>>>=;-:(=<>?:-.;<00<=?=8>>?:>>;.8,)(1,<>=;:>>=,:-.79??=7%9%16:2)%%8?98..31*=@?>??>??>??>=>???????????>???>?=>>?>=>>=?>>>>>>=>9>=>==?>;>?>>>>>?>>?;9>>>>>>>>>>9>=>><=>><=====<=====<======>=?;>?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:FF>==>>>>>>>>><>>>>>>>>?>>>>=>>;>>>>>>?>>>>>>>;>>;>>>><=>>;>><>>>7>>>:>??????>?:@87=.=)9)):>1&/%3:%82;86:<<@6+6?*/>*8?:;..=@<984 MC:Z:151M MD:Z:2C80C22T22T2T18 PG:Z:MarkDuplicates.1X RG:Z:HK3T5.6 NM:i:5 MQ:i:60 OQ:Z:AAFAFKAAFFKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKFKFAKKKFFFKKAKFFKKKAFFKKFFKKAKKKKK>;-7=9<8=<=<=><<==<9<=>:==>>?66<9:-&7/277:<>=>5=<>><>>-9>=;4<>,-><>8<&.>:>>>>>==:>>...5::=?,-&;8:&(8;=.3)'5?;&<85<:################################# MC:Z:151M MD:Z:32G63A3A0T6G14T16T9A0 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:8 MQ:i:60 OQ:Z:AAAFA,AF?9=>>>>>>>=<-<<4>=<<=<:>8=><<;;=2<8.><><=&<7;'7->=481=;=>=>=?>9<:9;577=>;:0:6<>>>>>=>?>>8>.9>>>::>=>>>>>=>43=?>>)>;??@79@99.4,5*./<@<;##### MC:Z:151M MD:Z:42A32C48T14T11 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:4 MQ:i:60 OQ:Z:AA>=?=>>>>===<==<=>==<=<==<==<==<===>=>===>>>>==>>=>=>>>>>>>>?=>>=>>=>>>=<;>?>=>?>>>>>?>>?>>>>>>>>>>>>9>>>?>>??>????????????>???<@?@??@@@?@??@@@?>>::? MC:Z:151M MD:Z:70C80 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFF0<6==.(6>;=:>>>=>0)0/2.0=/>.'/00<62&>;>0/..:=>2/7;50:(&$(35;$1=.*08.<>/=..<..49##################################################### MC:Z:61S90M MD:Z:0A66T1A4A31T5 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:5 MQ:i:60 OQ:Z:,<<<=>>>=>>===<=>==<=<==<==<==<=<==============>=<6<>;>>>>>?=>>>>>==9>=>>>?>=>?>>>>>?>>?>>>>>>>>>>>>9>>>>==>>=?9?????????>;=?????>?>9??>?>?@<@?@??>=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKA?>??>??>??>?>????9????>?==>>=>=>>?>=>>=?=>>>>>=>>>=>>>?>=>9>>>>>?>>?=>>>>>>>>>>>9>>>>=<=>======<=====<====<==<=:===<=<=7==>>=>>>?=>>?> MC:Z:151M MD:Z:65C85 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#FKFAFKKKKKKKKAFFKKKKKKKKKKKKKKKKKAKKKKFKKAKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKFAKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKF,9=;>???=<:;/,6>::<=0:;??;;0,3)=>98-;5.>>8>==?898-6;5.'.:81)538;;>49;>=;'*>=<,=6>8:>>82&<<7====:=#<==<'>(=4===;4===82>:<>= MC:Z:151M MD:Z:4T6A15C31C42A23A4G19 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:7 MQ:i:60 OQ:Z:############################F,7<7FKKKA7>:<;3A;=>@23A@?@??2??<<2?2??@>=6,??><>?>>>?>>>>9<>>>>>?>>?>>>>>?>>?>>>>>>=?><>>7>>?>>==?>>>>=<>>>>>>>>>>>>==>?>>>>>>=>=9?>>>>?<<<>?>>>=? MC:Z:116M35S MD:Z:34C116 PG:Z:MarkDuplicates.17 RG:Z:HK35N.2 NM:i:1 MQ:i:52 OQ:Z:AA?>>??>>?>>?>?>>>>>?>>>>?>>>>>>>>>?<>?>>>??>>>>?>>>?>>>>>>>>>>??>>?>>>>>?>>?>>>><>>?>>>>9>>?><>?@????????????<6???>???@;?<9<:>'==;?@=<;>@>7:8:?998< MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKAKKKKKKKKKKKKKKKAAKFKFFKKK?=>==<==<==<==<=<======>>==>=<>><;:;>?>>>>>?=>>>>>696;=>>>?>=>?>>>>>>>>?>>>>>>>><>?%6????>>>?????=?>>??@???>@@@.@A><@@@>?3A-/;7;5>### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFF=>@2:????@?>>;8@?@@A@=1>7@>?7=@>>???>???@?>?>???9=>><<>9>>>>==>><>>>>>=>>>>>=>>>>>>>=>=>>>=>=>===>><==>==>===>=====<=>??>=<= MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:1 MQ:i:60 OQ:Z:AFA?@@@@@@?@@@?@??=@?>??>@??????>???>???@?>?@?????@>>9>>>>>>=>>>>>9>>>:=><>=>>>>>=>>>>>=>>>>>>>=>=>>>=>=>>>>>=<=========>=====<===;=====>???=;= MC:Z:151M MD:Z:42C108 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:FKFKKKKKF@=????>>>>>>7>>?>=>=>>??>>>>>?;>:>><>>>>??>>?>>>>>>>>?>6=><>>?>>>=9>>?=>>>?>>>9>=>>>>>>>>??@//>?>?==>==@??19?>@@@<1?>A@??@@@.:::99< MC:Z:151M MD:Z:37C113 PG:Z:MarkDuplicates.1E RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKAFKKKKKKKKKKKKKFKKKKKAKFKKFKKFKKKKKKKKKKFFKFKK7FKFKKKKKKFKKKKFKKKFKKKAFFKKKKKKKKKAKKKAKKA,>7<>>>>>>?>>?>:>??==<;>;>>?>>>>>>>>>>=?>>?>>>9>?>>?>>>>><>?=??>7??<=?>=@??????;?68??7>????@>????@97?8;=@>-;7);22:;@>8>@A9??@8<>A=..<9:/79# MC:Z:151M MD:Z:36C114 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKAFKKKKKKKKKKKAFKKFFFAFFKKKKKKKKKKKKKFKKKKKKK?>?>>>>=<<==<=<==>=====><=====<===<===>=<=>==>>>?>>?>>>>>>>>>>>>7>>>>==>>=>>>>>>>>>>>==>>6>>>=>:>>>=>==>>>>?>?????????@?????>???????;@@@@@>@?72<1:@><=A@??;6-,>?9@??????????@@??@??>??@??>>;>>>>>?>>>>9>>?>>>>?>>>>>>>>>>>>>>>>>>>>>?>>>>>?>>>>?>>>>?>>>>>>??>>==>=>>>>>>?=>>>>>>>>>>???@=?> MC:Z:151M MD:Z:33C117 PG:Z:MarkDuplicates.1B RG:Z:HK35M.6 NM:i:1 MQ:i:60 OQ:Z:K<=4<=>=====>9=====<<8=<=>>?>=>?>>>>>?>=;>>>=>>>>>>>>9>>>>==>>=>>>>>>>>>>>==>>>>>>=??>??>?=-9:>??>=??????9?@?????>8??@@@@?@@@4=>@@@A@@=?###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFAFKKAAAA?@@;;A@@?@?=@@A@@?A@@@??@@@@>???::5?????>?<>>>>>>>>><>>>>>>>>>==><>>>>>>>>>>>>>?>>====>=>>>>>>>=>>>=>===>>>>>>>>>=8; MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:KKF>?>>>?>>>?>>>>9>8;>>??>>?>>>>>?>>?>=>>><>.74<<7>>?>>>>?>>>>>>?:8=??>????6???@=6>=<=???;@????@==?=62@=-;==?@@@@?9)>8):==9@;8*.*9@=############## MC:Z:31S117M3S MD:Z:151 PG:Z:MarkDuplicates.1V RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:AAAFAKAKKKKKKKKKKKKKKKKK?=6,+67=??=>>?=/<89,(,4=>>>>>>>>>>>>>>>>>>>>:?;>>>>?><>;?<>>>?>>>><>??>?>>?>>>>>>>?>>>>>>>>>>>>>>?>>>>>?>==9>>>>>??>@;=> MC:Z:151M MD:Z:14C136 PG:Z:MarkDuplicates.1I RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:######A<,A,A<,,KAA@@??@?????@?>>>>8->>=>>>>>>>>>>>>>>>>>>>>?>>>>>?>>>>?>>>>?>>>>>>>?>?>>?>>>>>>>>=====>>>>=====>>>>=>?>>=9>>>>>>>>@ MC:Z:151M MD:Z:12C138 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AKKKFKKKKKKKFKKKFFKKKKKFFKKKKKFAKFFKKF<8@>@>@?@@?????@??@????????????:????>?>>=>>>>>=>>>>>=>>>>>>>=>=>>>=>==>>>>>=>>>>>>>>>?>>=>>=>>>>>>>>>>===>=>====<=<=<====<=8==<====<==>=>>>@>8<:= MC:Z:151M MD:Z:5C145 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:KKKFFFF-@?0*.=;-77<-;.8-;-@>828=>>72:12>8-()>01=7=:?>>?>>>>>=$&;>>>>>>><;>>>=?>>6>>?8>>9;>>>>?>>?>>>>>??>9>?>@8+- MC:Z:151M MD:Z:0A99C50 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:#FKFA,FA,,,<<,77<,<,7,<,KF<7<=>>?>>=<=>=====>==><===========8)3=>==>>=>>>=>><<=>>==>.=/67=;/=;>=>=5>>=>>=>><>>>>>>?>>>>?>???>?????????>???>??>+8<;=?>===9@@9=8@69?1:995AA5;@@>#### MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKFKFKKKKKKKKKK,>)0/)?@>>:*???:1?:????>???;=????>?????===7:?>>=>=>>>=>=>8>>>>=><;;6/>>>?>=6====>=7>>>>>>>>>>8;;=>>=>;7<====<<8;:<67;;<=:;=;==>=7=>>?>=;= MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:1 MQ:i:60 OQ:Z:#AA7,,2=?;==>=====>=>>>>=>===>>=9=99>>>==<>=>>>>>>=>>=5=;>>>;>><>=;>>=>==><>>>??>9??40?>>9=??*<<@?@/77@==@?;?9@@4<@=A'A8>>AB0;>>267299<; MC:Z:151M MD:Z:108T23T18 PG:Z:MarkDuplicates.1P RG:Z:HTL2K.6 NM:i:2 MQ:i:60 OQ:Z:;?>?>?>>>>>?>>?>>>>>>>?>>>>9>>?5>>>?>>>>>>>>>>>>>>>>>>>>>?=>:>>?>>>>@?>?>????8<<>@?@??@??????8@??9??????@??,3>?@@&22;@@=A@.<=>=?>>?>>>>=>==>============8====<<==<=====>>=>>>==>>>>>>=>>=>>=>==>>>>>=>>>>>>>>>?>>>>>=>>>>>>>>>>>>>>>>>:<>>?>?>????>>:??;>>??>?<>>?>?@?;@@0> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>??>>>>>?>>?>>>>>>>?>>>>9>>?>>>>?>>>>>>>>>>=>>>>>>>+=>?8>>=>@>>;;=??9>@>>?????@>@??@??.?>?=@???????:???>?<;.;;>@A@@04;?/?9&(/88<*89@86<)<>=3A?=<### MC:Z:151M MD:Z:126T24 PG:Z:MarkDuplicates.1F RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:A?@@@A9)@@>>@02>>;?@@::75:4*>8?:)????:<>7=<89=<<=6:?>?>?55:1:>><>>;=>>><><>>3?5>><>=>>>>>>>>>>==8>13>:5;==<===81><=8==<====;=<=<===;=5;77>=:==@?<<.= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:7KFAKAAAA7,FAF<>???>>>>?>>?>>>>>>>>>>872>>=8=>>>>>>>>>>>>>>>(:>>;>?:>>>>?>>>>?><<:=<><=:=>>?>>>>7=>?;>>?>:-6?=??@?=67?=??7>>?@<@>??@;0%6>@27/9.<:<### MC:Z:151M MD:Z:50T53T43C2 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKAAAKK==@@A@@8@@8=&9((>>8%5@>9@>?<>=:@???;=??????@?:???>=-??>=8?>>?>><<>>>>>>=49=>>>>>><>?<9>;6>3<-9>>=>:=>==>><=>8>>>?><>=9=9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:##AAK<:>80:0>1@@?@967.???=29??>?????78;??767<><=?<>=>??>=><>>>>2*)>><799,><;>>8=<=>>>>>>>>>8>=<>>70&>;<1==<;;=7(,&)(96=;=<:2));:>&<3'7);=')'<,9 MC:Z:151M MD:Z:127G8G5T3G4 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:4 MQ:i:60 OQ:Z:>?>>?==>=========8====<<==<>=>>=>>====<<>>>>>>=>>>>>=>==>>>>>=>>>>>>>>>?>>>>>=>>>>>>>>>>>>>>>>>/<==>>?>?????=:????>??>?:.:?>?@>:???@@A>@A@@=>=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AA?>?@?>>?>>?>>>>>>>?><>=8==>>>>*;;><====>>>>>>>>=>?>>>>>?=>>=?>>>>?>>>><>??>=>>?>>>8=>>?>>???;>=;?-85>9>799<9<=<399=;<@>=>>>8'/9=AA?6=### MC:Z:102S49M MD:Z:35A113C1 PG:Z:MarkDuplicates.1C RG:Z:HK35M.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKFKKK7AAKFKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKFKFKKFKKKKKK7FKKKFKKKKAFFFK,A???A@8/.?:?>;?A>>>9@@?@9.??=?@@=?>>@???=>===?=?>?><5==?>?:>>>>><>><<<)91?8;>>:=>>;>>>=>>>9<7>>;;=>>=><<7=>>>=>7>>=>=>=<>==<===>=8>=<==>==>>=?>?=;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:#A7?@==>=====>====<<7====<<==<===>><>>=;>=:;<>>>;9=>>>>=><=;>>>>=>>>>>>>>>?>>>>>=>>>>>>>>;>???=??5=;9=>>?><6=?>?>??>?7?>@?@A?;@6:??@@@B<>=@@>;88= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HM3G2.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKFKKKKAFFKKKFKKKKKKKKKKAKKFAKKFFAKKKAAFKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKFKK7FA??@>>>>>>>?>>>>9>=>====?>=>>=>>>>>>>=><>8>>>>><>>>>>>>>>>>>==<>>>>>>??>>>>>>>>>>>>?>>>>>>>>>>>>>>??????????9>>???99=?;?=??@@?:????=>>?=@@@@@@@?><:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1W RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAK>?>>>>?>>>>9>>?>>>>?>>=>>>>>>>>>=>>>>>>>>?:=>>>?><7??>>==?>????<<=???8:9>@=.;*8>1<'15:--:1<82/;:9?@7(58;=?8@?################## MC:Z:151M MD:Z:138T8T3 PG:Z:MarkDuplicates.1L RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKAFKKKKKF7KKKKFFKKFKKFKAKKKKKKKKKKKKKFKKKKAAAKKK7AAFKA,A,7F7<,<:=0?@?<>@@@@9????:'8?>>>=?=???==9??>>>????>>>>>>>=>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>=======9>===>=>====<===>=8========>=====<>>>>>???>=? MC:Z:151M MD:Z:20A130 PG:Z:MarkDuplicates.1R RG:Z:HTL2K.5 NM:i:1 MQ:i:60 OQ:Z:KAF<,AKFAAKKKKFKKKFA( VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.10 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.E +@PG ID:MarkDuplicates.11 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.F +@PG ID:MarkDuplicates.12 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.D +@PG ID:MarkDuplicates.13 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.14 VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.15 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT23WCCXX, /pod/pod2temp/pod2/tmp/proctmp/HT23WCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.G +@PG ID:MarkDuplicates.16 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.V +@PG ID:MarkDuplicates.17 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.U +@PG ID:MarkDuplicates.18 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.X +@PG ID:MarkDuplicates.19 VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.W +@PG ID:MarkDuplicates.1A VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.R +@PG ID:MarkDuplicates.1B VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Q +@PG ID:MarkDuplicates.1C VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.T +@PG ID:MarkDuplicates.1D VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.S +@PG ID:MarkDuplicates.1E VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.N +@PG ID:MarkDuplicates.1F VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.M +@PG ID:MarkDuplicates.1G VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.P +@PG ID:MarkDuplicates.1H VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.O +@PG ID:MarkDuplicates.1I VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.J +@PG ID:MarkDuplicates.1J VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.I +@PG ID:MarkDuplicates.1K VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.L +@PG ID:MarkDuplicates.1L VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.K +@PG ID:MarkDuplicates.1M VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates +@PG ID:MarkDuplicates.1N VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.14 +@PG ID:MarkDuplicates.1O VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.15 +@PG ID:MarkDuplicates.1P VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Z +@PG ID:MarkDuplicates.1Q VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.12 +@PG ID:MarkDuplicates.1R VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.13 +@PG ID:MarkDuplicates.1S VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Y +@PG ID:MarkDuplicates.1T VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.10 +@PG ID:MarkDuplicates.1U VN:aedbeb02792e271c9bd649f38b9293a2efd3bc7f CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/4/Pond-492081/HJYFJCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/4/Pond-492081/HK3T5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/5/Pond-492081/HK3T5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/6/Pond-492081/HK3T5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/7/Pond-492081/HK3T5CCXX.7.aligned.duplicates_marked.bam, /seq/picard/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/8/Pond-492081/HK3T5CCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT23WCCXX/C1-318_2016-04-02_2016-04-07/3/Pond-492081/HT23WCCXX.3.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G94982/NA12892/v4/NA12892.duplicate_metrics COMMENT=[aggregation_version=4] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod3temp/temp/picard/G94982.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.11 +@PG ID:MarkDuplicates.I VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/5/Pond-492081/HJYFJCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.J VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/6/Pond-492081/HJYFJCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.K VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/7/Pond-492081/HJYFJCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.L VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HJYFJCCXX/C1-310_2016-02-04_2016-02-26/8/Pond-492081/HJYFJCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYFJCCXX, /pod/pod2temp/pod2/tmp/proctmp/HJYFJCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.M VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HJYN2CCXX/C1-310_2016-01-23_2016-02-29/1/Pond-492081/HJYN2CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HJYN2CCXX, /pod/pod3temp/pod2/tmp/proctmp/HJYN2CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.N VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/1/Pond-492081/HK35MCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.O VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/2/Pond-492081/HK35MCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.P VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/3/Pond-492081/HK35MCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.7 +@PG ID:MarkDuplicates.Q VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/4/Pond-492081/HK35MCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.8 +@PG ID:MarkDuplicates.R VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/5/Pond-492081/HK35MCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.9 +@PG ID:MarkDuplicates.S VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/6/Pond-492081/HK35MCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.A +@PG ID:MarkDuplicates.T VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/7/Pond-492081/HK35MCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.9 +@PG ID:MarkDuplicates.U VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK35MCCXX/C1-310_2016-02-04_2016-03-02/8/Pond-492081/HK35MCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35MCCXX, /pod/pod3temp/pod2/tmp/proctmp/HK35MCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.A +@PG ID:MarkDuplicates.V VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/1/Pond-492081/HK35NCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.W VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/flowcell/HK35NCCXX/C1-310_2016-02-04_2016-03-03/2/Pond-492081/HK35NCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK35NCCXX, /pod/pod2temp/pod2/tmp/proctmp/HK35NCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.C +@PG ID:MarkDuplicates.X VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/1/Pond-492081/HK3T5CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:MarkDuplicates.Y VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/2/Pond-492081/HK3T5CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.D +@PG ID:MarkDuplicates.Z VN:b1f52bc8a54f1d14e8625776bd82d5b14cd0779d CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/flowcell/HK3T5CCXX/C1-310_2016-02-04_2016-03-07/3/Pond-492081/HK3T5CCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HK3T5CCXX, /pod/pod3temp/pod2/tmp/proctmp/HK3T5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.B +@PG ID:bwamem VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.1 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.2 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.3 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.4 VN:0.7.7-r441 CL:/seq/software/picard/1.1012/3rd_party/bwa_mem/bwa mem -M -t 8 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.5 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.6 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 8 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.7 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.8 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 12 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.9 VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.A VN:0.7.7-r441 CL:/seq/software/picard/1.1020/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.B VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.C VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.D VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.E VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.F VN:0.7.7-r441 CL:/seq/software/picard/1.1029/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.G VN:0.7.7-r441 CL:/seq/software/picard/1.1061/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@CO aggregation_version=4 +HT23WCCXX160402:3:1205:30827:48670 99 1 14804631 60 151M = 14804891 380 TCTAGAGAATTCAGGACAAGAAAAACCCCTAGGACTGAGATGGGTGGAGAGATGGATGGATAGAGGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAGGGAAGGAACGAAGGAAGGAAG ?;>????>?>?>??>>>???>????(==????>>>?=>?=>=>=;=<=?>?>>?>>9?<==>=:(9><==>>7==>>??=+=?=<=?>?@@?@@?>?>?>>@9>>@>?>@??9=.?<@@@?>9>7A*9=AAA@@############## MC:Z:31S120M MD:Z:25T38T64A8G0A11 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:A-69%1:9(??=1@=6889+<846-41,??8<%<=<(<=:?944-<7><>>><7=<(<=>?<>>>>?=;;7=4?<>>?>>>?>>>?>>>?<>>?>>;@5>;0= MC:Z:151M MD:Z:25T8C17T3T3T19T3T19A34A11 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:9 MQ:i:60 OQ:Z:##########################################FF7F<,F,<7(7A7,KKA7KF77AA,AA>9@?@<;1+=@<9=>.,0=>@?>>:@>=6>=7-><-=5?>===7,=<=?>=<@@?@@?>=??>?>=>?=<>==??>???>???>???>???>???>???>????>?=>> MC:Z:151M MD:Z:3A23T10T11T86A13 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:########################################KA<>@??>????=>?????>>>??>?===>>==>>?>?>>?>=>?>>>??>>?>>>?>>==<>>??>>?>>>=?>>@???@?=@@??@@?=@@??@@?>??@@?@@??@@??@@??@@@@AA@>AA@@AA@@AA@@ABA?B?4=###### MC:Z:151M MD:Z:127A23 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKFKKKKKKKKKKKKKFFFKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKFKKKKKKKKKFKKKKKKKAKKKKKKKFFFKKKKKKKKKKFKKKFKKKKKKKFKKKFFKKKFKKFKKKFAA7A###### UQ:i:42 AS:i:146 +HT23WCCXX160402:3:1219:27965:71770 147 1 14804643 60 2S149M = 14804419 -373 GAAGGACAAGAAAAAACCACAGGACTGAGATGGGAGGAGAGAAGGATGGAAAGATAGATGGGTGGATAGATGGAAGGAGAGAAGGAAGGAAGGAAGGAAGAAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGA ##################################################################################?:*,:5<30)?5?;4/>*-=<:**-03350;==;)8,/38:?;==:;8>933<0<)=?7;> MC:Z:151M MD:Z:13T2C0T14T7T7T4G18T3T21G3A24A21 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:12 MQ:i:60 OQ:Z:##################################################################################FA,,7;*&/<>98<=77:505=8+?>???<=:==-8<><,>?>>>=8<>?>???>???>?>?>???>>01>>3=> MC:Z:151M MD:Z:12T4A4T13A17A21A10A38A12 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:8 MQ:i:60 OQ:Z:###############################################################AA,,,AFA7AA777AK777,,,7A,7A,FAF7,=.@>6,9=<<=?97=@;7==-99=<8=?9>??><>>>?8>>?=>====;??>;?8=;?<96;??>;??>???>??=>??=>???>???>??99???>????>???@@>=<> MC:Z:151M MD:Z:10T1C6C9T94A26 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:5 MQ:i:60 OQ:Z:##########################AA,,AA,<,A,<7FA,KF7,7FAAFK<7FKF7FF,<7FA7FKAFKKFAAFFFAKFKFKFFFFAKKKAKAFAKA7;*<98*:??13>-?3?@@:>=@9;>@:78>>=<>;**-0?>=0=>?>?=???>???>???>???>??>>>??>???<>?@>>>=> MC:Z:151M MD:Z:8T0C11G5T7T11T7T11T3T50A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:10 MQ:i:60 OQ:Z:#################################################################F<,A<7,7FF,7F,F7KKKAKFKAAFKA<>=>>@??>>>??>?>>?>>>?>>?>?>>?>>=?>>>??>>?>>>?>>>?>>?@@??@???@????@?@@??@@??@@??@@??@@??@8>??AA@?AA@@AA@@AA@@AA@@AA?AB@A/9@A@A>=AB@9@?@@AAA@A/*4?@=:1=# MC:Z:151M MD:Z:115A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7AFKKKKFKKKKKKKKKKKKFKKKKKFKKFK,7FKFFAAKFF>>??>?===>>>?>>?>?=;?>>==>>=>?>>?>>>>>>;=>>>??>>=>=>?>>=??>??>>??>>@>>??@>=@@??@??@?@@?>@@?>@>=?@@??@@??@??=@<:>@?@:@>@@AA@@AA@>A@8@@=AB@>><<98# MC:Z:75S76M MD:Z:113A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKFFFKKKKKKKKKF?>>?>>=?>>?>?>>?>>>?>>=??>>?>>>?>>8?>>>??>>?>>>?>>>??>??>>??>>??>????>@???@@@@?@@??@@??@@??@@??@@??@@??@@??@@?@@A@@AA@@AA@@AA@@AAAABBAAAA><:9? MC:Z:151M MD:Z:110A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:122 +HT23WCCXX160402:3:2108:16752:19645 83 1 14804660 40 127M24S = 14804541 -246 GAGGAATGAGAGGGGTGGAGAGAGGGAGGGATAGATGGATGGGGGGAAAGATGGATGGAAAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG #################################################################=9;*??@;>,?>=9>6<==7;69>?>=??>=>=<=>?=??>???>???>???>??=>???>??6>???>?;<>??@>>>9? MC:Z:151M MD:Z:0T4C5T11T3T15T3T11T50A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:9 MQ:i:60 OQ:Z:#################################################################F<<,KKKAF,AFF>>>>===><=>===>>==>>=<>>>=>>==>>===><=>>?=>?<>>=??>??>>??>><=>>??>>??>>????>??>>??>>@?>?@@?>@@==@?>.>??>@??>@?>?@?;?.<7.=<;/==<=/=?@############ MC:Z:151M MD:Z:105A16 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKFKKKFKKKKKKKKAKKKKKKKKKKKKFKFKKKKKAKKKKFKKFKKKKKKKKKKKAFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKFAKFF,AFKAKKKAKFFAKFAA,A<,9@;A2+16-0??>0:@.-05.79@=:>?;:?=>?@?8/+:,/*1-,0>><*<5@>?<@@>@@=>6<3+=>:@>=0=>???==>;+/;;>=>=>???>=>?>;??=??;>?><??.>???>??=>??:6>?????==? SA:Z:7,121243331,+,8S46M97S,9,0; MC:Z:137M14S MD:Z:101A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:###FF<<;=;>?>?>>>?>>>??>>?>>>?>>>?>>>??<>?=>8=>>>??>??>>??>>??>>??>>??9=??@???@==??>?@@??@9?<@@??@=?;79?>>=?<@@??69:?@@?=<:>=<>@<=>(.>?@>?>??>>???>>?>>??>>688>>??>??>>??>>???>??>>;?>7;5<>>?,=>8=<;;=??@@8?7<'-;=8?@=8<74('<=5?+)';;@5?,)(7:8=?############################ SA:Z:4,62156366,+,82S69M,1,5; MC:Z:71S80M MD:Z:97A4A11 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:2 MQ:i:37 OQ:Z:,AAFFFKKKKKKKAKKKKKKKKFKKKKKKK7AAKFKKKKKKKKKKKKKKKKKKAKKKKAKKAKKK7A>??;?@=;?;>>=896?==6?==>??=>??=>???=??6?;??=??>???????>???>???>???>????@?9==> MC:Z:55S96M MD:Z:5T6A24T3T50A58 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:5 MQ:i:60 OQ:Z:#############################################A7KAKFF,KFFAKKKAFAFAFFFKAFKFAFFKFAAA7KFF7KFFFKKFFKKFFFKKKKKFKF=::029-=2196-7=9@998<:6.=??@=??<)8=>)5><4);;<=>>;<>?>967=>><>>>>>>>??>>?>8??>:??=>?=;9 MC:Z:151M MD:Z:3T7T15T7T54A60 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:5 MQ:i:60 OQ:Z:#################################################A7FFA<,7A,<77<7,7F::-/=:-,/*-$84':<<./4:-,91-.5:./):.+0=1=1=+?1=9?):->4=>??>>??>>??>>??<>>>>?>>??>>??>>??>>??>>??>>??>>??>>@A==?> MC:Z:151M MD:Z:14T2A71A16 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:3 MQ:i:60 OQ:Z:#######################A,AAA,,FA,,,,,(A<,@@@<@@A??@AA@AAA?AAA@?AA@=@A>=?:@?=@@?>@@??@@?>@@?@@@?@@@?>@@?@@@?@@@?@@@@?@???@??>??>>=>?>??>>??>>??>???>?>?>???>???>??>??@=>>== MC:Z:151M MD:Z:79A71 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:#AA,**98:?)45?4=?6/):@<>:$)-6$)66/;>>>9>=70/?>=>?>?>:;>>>8>>?>.-8();?60>=)>?>;- MC:Z:151M MD:Z:13T2A8T45G4A6G3G3G45 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:8 MQ:i:60 OQ:Z:######################################################A<7,AA,,<?=>=?>?>>>??>>?>>>?>>>??=??>>??>>??>>??>==?>>?=:=8?>&:=>?8?>??.)6=<>?..19.?62.?9)..0:7.))..2*??<9@88*?@@?@@**A>>###################################### SA:Z:11,2835854,+,78S43M30S,0,0; MC:Z:151M MD:Z:73A16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKFAKKKKA>>??>>?>>>?>=>??=??>=??>=??>>??>=??>>>???>??>>??>>??>=>=>;-:>>?=<>=??>?>=?=@??>@9;;>?8?>??@@??@@??@@??@@>>/78?8;<@?A@>=>8<>3=:@@@@*:?A@BA0@>=9<;= MC:Z:151M MD:Z:70A17T23T14 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:27 MQ:i:60 OQ:Z:AAFAFFKKKKKKKKKKKKAKKKFKKKFKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKFFFKF,FKKKFFKAKKFFFFKAKKKFKA</=;>)-9<-?=>?*=-??<=<<5=>7=>15,=1<5>?>>>40=;>=>><>=>>=>>>>>>>=>>>==>>=><>=>>>=??=9=< MC:Z:151M MD:Z:11T3T3T16G4G28A58 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:6 MQ:i:60 OQ:Z:#########################################################F,FAA,,*2,<6.):>4:><)=;=/?>?<<8@<>>??>=>?>=??<>??>>??>>?8=>??>>??==>?=>?<9/??>>?@=>?;= MC:Z:151M MD:Z:14T54A16 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:##########################################################A7,A,A,<>?=>>==>>==>>>=>>==<>==>>==<>==>>==>=>>=<=>>??4=??>><<>=>?>>=?>>??>=;=>?>>.95<<:>0799-.,)<.787)>2=.,;>.;?->><>A8?>@########################## MC:Z:151M MD:Z:66A31T5T25A5T1A7A4 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:7 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKAKKKKKKKFKKKKKKKKFKKFAFKKKK?=?>?>?>>>?>>>??>??>>??>>??>>??>>??>>????=??>>??>=?@???>?=?@??@@>=>@?>@>??@@?>=9==79=>=?>>?<;9-,6-.88??=<@?->@/>>@>>AAABAA>>A::>;?A>A:>>A9?AB=>?@9<652 MC:Z:151M MD:Z:65A85 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKAKKKFKKKFKKKKFFKFFKKKKKKFFKKFKFKKKKKAAAFF7AFFAFFFKAA7,,7,,<?=>>@>>>?>>>??>??>>??>>??>>??>>??>>????>??>>??>>??>>@@???@??>@???@2>9;>?.;-,;7;@.<8>.-*:AA@?>>??BBAAAB?/A@AAB9=################### MC:Z:151M MD:Z:63A69T0G16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKFKKKKKFKAAKKKKKKKKF7,<7=(-1<<.0664*;<-?2;'>;=<>>:=??==>?>=><:+>;;=??==??>??4??><>=?==;??>?><>?>@?>>>? MC:Z:151M MD:Z:6A5A10A38A17T70 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:#############################################FA,,7AA,A<?@>>><>:>=<;??<>>?>>??>=>>>=>==<9<=>9;?==?=>>=?>>==97>=><>=>>8=>=>:9>)==/>>?>=@<8-=-=>>???:=>-,5>@@=>>@?>:?=>/?=/>8@3>@A>2A/>=3@A>,)0(B?B9>=<;9< MC:Z:26S125M MD:Z:55A17T77 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFFFKAFK=>>?>??>>??>>??>>??>>????>??>>??>>??>>??>>??>>??>>??>>??>==?>=@??><=?=8=?=>@??=9/<=???=????>=>>@?>>3=>:>?98>>???>.??);?3?=?9:?>6)->):<=9>6@55,/8?@@89;?<<-<29-?)???89;@8?>@@=>?@??@8'8=??>>??????>?>?>???>?>>>???=,??>???>;?=>???>>>>>???>?>????@@>?<> MC:Z:151M MD:Z:22^A2A24A88 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:3 MQ:i:60 OQ:Z:#####A7F7F7A,<,@?<>9?8=><0>???>??8?6><>????>?<9??:5???>???>???>??<>???>???>???>??>????>??>@>>@> SA:Z:6,51980539,-,35M116S,0,1; MC:Z:151M MD:Z:22^A2A24A76 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:3 MQ:i:60 OQ:Z:####################################################A,A775;9(2><859.((27(59<&8=??>>5>9>;<>;;9<>+8>???>???=>?(3>?:0??=?@@==>= SA:Z:4,28386059,+,110S9M1I31M,7,2; MC:Z:115M36S MD:Z:22^A2A24A70 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:3 MQ:i:60 OQ:Z:##################################################################A<<,AA77,,<7,,KF7A?=()-/))89(2,/(66.();.1(;.4(=(<(,/8=,<<2-680?@?=;?=*>?1((.(+7<(78(8(>+<:>??><>?=8=-<1?>==@> MC:Z:151M MD:Z:22^A2A14A9A17T1G5A61 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:7 MQ:i:60 OQ:Z:##############FAA7,<,KFFF<,,,,,,A7,7,,,<7,,,A,7,A,<,A,F,,,AF,??7(6?1>>???>???????>???>???>???>???>??<=??<>??=????>??>?9/ MC:Z:151M MD:Z:22^A2A24A77 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:###################################################FA,,F7AA<7KKF7AKKKKKFF7A,7KKFA,7F7KFKFKF7A>?:/7-?>*>:=8>?->> MC:Z:151M MD:Z:8G11G16G53A10G48 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:#######################################################################################################FKK?>>=???>>??>>?>>>??>>????>??>>?=>=??>>??>=??>>??>=?@<9?>??<>/->=>8.49<-:91?<:>-+->)467-7;.-779.<9*/8<>/3=3>/>)/>9=/.>?(/A>8>####################### MC:Z:5S146M MD:Z:49A33T14A14A15A8T7 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKFKKKKKKKKKKKKKKKFFKFKKKKKKKFKKKKKKKFFKF7FFKKAF7,FFKA,?@>>>?:>??>>??>>??<=??>>??>>??>?>??>>??=>??>>??>>??>>??>>??>>??>>??>>8>=>@??>@@??@@??@@??@@??@@??>@=??@>><@???@7?>@.@=@?@>>:@@AA@AA@@A@:>B?:@?57;;: MC:Z:151M MD:Z:21^A2A24A63 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKFFKKKKKKKKKKFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FFKKKKKKKKKKKKKKKKKKKKKKKKKAKFKKKFAFKKKKK????@@?>@@?<@@?>1@?>:>?>=@??8@??:@@?@@???>?>??>>??>???>???>??=>???>??>>>??>>?>>?????>=>. MC:Z:151M MD:Z:21^A2A24A81 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:###################################################AA,6;=?>><3903*-0*<-?4*-@=<>*;=91<1(9?><;64*>===9>?=>=?>==>;>5>=>=;;>?>=+=?*=:>?>=?=>??>>?===90?>>@?>=;>? MC:Z:151M MD:Z:11G9A27A9A82 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:#########################################AF77FKFAA7<,7,,,,A,F7,,KFAA,AF<,A7,7KKA<<7,@=>?@?>>??>>??>>??>>??>>??>>??>=??>>??>>??>>??>>??>>??>=??>=??>>9=<./:<><==>>;/6===>=8,==<@??@@??:=??@@<=>@>><<2;/8=7>.9><9=>,/9//+>::<:.?@@5>##### MC:Z:151M MD:Z:20^A2A24A96 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKK7FF,,AFKAFFFA<,7@6:.02:.850.>8??@<=.>===@??>?<8.@<=8?>>8><7>>><:,>><9><=)>+.>>>>><0>>?>>?;>>?>>>?>>>?>>>?;->:>>>>>>>>@>>>7???=?= MC:Z:151M MD:Z:19^A2A24A85 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:3 MQ:i:60 OQ:Z:#####################################AAA?>?>??>>??>>??>>?:??>??>>??>>??<>??>>??>>:=>;@@?>@@??>@?;@@??>=<;>87:>===>;>?5-67?-6<######################################################## MC:Z:151M MD:Z:46A31T9T11A15T4A0G4 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:31 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKAFKAKKKFKKKKFKKAKKKKFFFAFAA?<>*0)>9)-/&6;@92-899:/*)-><,6.81-.96;*><4?<<,.)5,.7<,.41,9(=,=)(==9,<:85-9===5/89>0.&49,$0,,-(,=6><:=8+986;?=>=:< MC:Z:151M MD:Z:10A6^AGAAGGAAG16A0A7A32T46T3A10A13 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:17 MQ:i:60 OQ:Z:#####################FF<<7,,AAF<,,AFFKF<,7,=<:>7=;*=**33>/'*=0?=8>:>>>?;>>0,,>.=>> SA:Z:5,172727915,+,93S33M25S,0,0; MC:Z:151M MD:Z:13^A7G9A9A2G14T36G4G2G3 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:9 MQ:i:60 OQ:Z:###########################################################################################FFA7F<<>?@>>??>>??>>??>>??>>??>>??>>??>>??>>??>>??>>??>>;=?=?@??>=?=6<-<>@?><@??7@>?@>?>?@??@@??@A@=AA?@AA@@@A@?A>>?>??@A?;3ABA@B3:?9;9.9A=96@>/+B9@=?<:74@ MC:Z:151M MD:Z:10^GAAAA24A103A12 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKAKKKKFFKF7F,AFKKFAKKK7FFKKFKFFKKKKKKKKKK>=?@@?>?=<8;?>>??>>>?>>>>>879<>??<-,=>>;9=<,=2->?<4>1<>>?,641<-+24<(89>>=?9:=<>;1?<7=?'>4-,-1<.88>?=;################################################# MC:Z:8S143M MD:Z:26A41T18A15 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKFF?==>@?>>??>>??>>??>>??>>??>>??>>??>8>?>>8=>.-><>=:=>?9-=-9=>,<,9>=@???@;?>>???@@)=????@8A2@80*>@<=A################################### MC:Z:151M MD:Z:23A63A36 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKK?>?>??>>??>7;?>>??>>??>==<>::<>=?=;>>>>;><9>=?>>=7==<>9,==>6<*=?>;@@?>=7:2?@=>>-..;&>;8:?.;@-=?..9?@A@(%9.(;==4-:4?A=############# MC:Z:151M MD:Z:21A102T0A25 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:3 MQ:i:60 OQ:Z:A@=>>;6?5?5?=:*+4>,/@?=?>8=,?@??@@?@@@?@?@>@?>????==?>????>>?>>???>?>?>?>?>??=>??>??>?>?>?>=??>>????>??>>??>??????????=>? MC:Z:151M MD:Z:5A14A17T112 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:################FA,,<7=:=5/=5?3**?>:,-/**98)2):),,26+,/)):8(>9?>)40'(*>*'+?,-<< MC:Z:123M28S MD:Z:14G0A6G8G0G7G2G5T14 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:8 MQ:i:60 OQ:Z:####################################################################################KFFFAF7,F7F7A77,FFA,,KFA,,,,,<7,7,7,,,77,,,,,<7,F?=>@@@>>??>>??>>??>>??>>??>>>?>>??>>>?>>??????>>??>>???>??>>??>>??>>??>>>@>@@@?>????@@@?@?@@@?@?@@?@@??@@?@@@?@@?@@??@@@??@@?AA@?@AAAAA@@@@@A@?@@?=:<9 MC:Z:151M MD:Z:11A103A35 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKKKKFFFKFFFKKKK<7 UQ:i:84 AS:i:141 +HK35MCCXX160204:3:2101:7547:3313 147 1 14804761 37 71S80M = 14804673 -168 ATAAAAAGAAAGAAAAAAACAACGAAAAAACAGAATAAAACAACGAAGGAAGGCAGCAAGCAATGAATGACGGAAGGAAGAAAGGAAGGAAAGAAGGATGGATGGAAGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGAAAGGAT ####################################################################9;$8::/*=5.15+.(=5878:+.(:.7=>@@=,6((+.75;5.(;??>=<((;>.8???>>,(9;??9>=(=7?=?@@>=>= MC:Z:114M37S MD:Z:20G5G7G6T38 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:4 MQ:i:60 OQ:Z:####################################################################AA,AAA,,F7,77,,,F77AAA,,,A,AFFKKF,7,,,,A<=??>>??<>??>>9=>>:=>>767+>>;?>?>=>?:>=4=>>@>=<=<>@@<<:=8?@@<=>@8/>=8>?.=-8>/>@????>??@???@>?-6=;-8@?-<@->=>:>:.7>>>//>?@>/..=9/+.A8<80=48;65 MC:Z:151M MD:Z:6A144 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFFFAFKKFKKFAKKKFKKKK?==>@?>>??>>??>>??>>>?>>>?>>>?>>>?>?>?>>>?>>>??>??>?@@??@@??@@???@?@@@???@??@@@?@?@?@?@?@@??A@@@A@A@A@A@@AA@@AAA@@AAAABAABBBBBBAAAABB?AABB>A=@>?@<464# MC:Z:151M MD:Z:3A147 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKFKKAFKKFAK>>???>>??>>??>>=?>=>?>>>?>>>?>?=?>>>?>>>>?>??>=??>>??>>??>>??>???>>>?>>@????????<@?@@??@??@@?@?@?@??@@??@7<>7????@??>@/@@>?A=AA/.>@@AA?>.++@?4=@(.5: MC:Z:4S147M MD:Z:0A103A42T3 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKK7FF7FKKKKKK9=>7===>>==>>==><===>8=<><4=<<=5/<=>>=;====>?>>?=>=<=>==?---(<=99;5???:<=/;>;<.<>>>,0:7>>@=:>######################################################## MC:Z:15S136M MD:Z:85G11C6G1T8A8A8T0T7T8 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:9 MQ:i:60 OQ:Z:AAAFF=?>>>?>>>?>=>?>?>?>>>?>>>??>??>>??>>??>>?@?>@@>>@@???@>>@@@?@?@?@?@?@@??@??@@?>?@?@;?@@?;@@??>>6>@??:?@9>=;@@=>>?8?.9?A@?=@@A:=&@>@A9@?#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKAKKFKFKKKKKKKKKKAKKFKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKAKKKKFFKFKFF7B9@=9-;9.-0<4-/<0)6??6<---7*.*0>>?@=;;=7,?>89=>=<.16>?>>?>=??????>>?=:>?>?9/?>???>>9?>>???>?@>>>=> MC:Z:127M24S MD:Z:6A8T7T1T40C30A53 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:#####################################A7A??19,==?>@89>=8(<@@=:8=??@?2,(5@>?8=2@57<7=999+>:>;7-(>38???8;28=><=>??????=>???>>?>?;=?>???>>2?>????>??>??@?>?9> MC:Z:134M17S MD:Z:6G0T11T1T5T3T21A39A57 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:8 MQ:i:60 OQ:Z:##################################FA,FFF7A,AFKFKAAFAA,FKKF<7FKKKF<,,7KFKAF7F<7AAF<7A,F60*>>@4*>@1>=>?>@@>>-?<>:>;?@?@=@?@>@??>?@>??>=>?=5;3??>>?>:?>??>>??>??=8???>>???>?>????>??==59?>>???>??>:????@>?>?? MC:Z:151M MD:Z:0A5G83A60 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:#################KKFFKAAFKAFA7KFA;:><0.>>1:>?=>>?,>3>=>6=9><;?=??>>==>>==>>??>>??>??@???@?9@@@7=?:9@?@?@@??@>?@@?@=6>@;?@@*@>;3:.97*/>=A@9=5A###### MC:Z:151M MD:Z:89A57T3 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAAFA<,FF7AKKFKKK,A7FFK7FAKAFKAKKKKAFKKAFKKKKKFKKKKKKKKKKKAKKK>6:3<80=;>*1;0)7@@3>@?*<-?*3>/7>?=:><.6=??>?>?>?>:>?>>???@=?=>> SA:Z:8,102319712,-,21S32M98S,1,0; MC:Z:151M MD:Z:14T8G7G56A10 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:############################################################################FF777A<,FFA,7A,,=>?>>>?>?>>>>>>>>>??>>??>>??>;??>=??>>>>>>??>>>?>?>>>>?>>>>>??>?>>>?>>??>>?>?>>>>=:==.8);>?:?@@9<@:?@@?@=@@A@/9@>;:6< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:?>>>?>>>??>??>>??>>??>>??>>??>???>>>>>>???>?>?>?>?>??>>?>>??>?>?>?>????>@?@??@???@??@@@@@@???@@@?@?@@@??@@???::?@=>@@A@@@A@AA@/-=8@AAABA2/4@;99; MC:Z:151M MD:Z:76A74 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKAFKFKKKKKKKKF,,<7FKKKFK,,7AFK<< UQ:i:42 AS:i:146 +HT23WCCXX160402:3:2213:26585:42376 147 1 14804801 60 151M = 14804474 -478 AGATGGATGGAAGGAAAGAAGGAAGGAAGGAAGAAAAGATGACAAGTGAATACACAGATGGAAGAATGAATCTGTCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAA ###############################B<.=@<@@>@@8?<80;>7-??;?@>?=**@@?4-.>==->85?<=?@?@@?;>3=@<=@@@>3-,@5<8<>=:*4.=?>>9?>=8);==?>=>=???:????>>->6;>>-==;>> MC:Z:151M MD:Z:1T9T0A3G19G36A77 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:###############################A<,>?>?>>>??>??>=??>=>?>=??>>??>???>>>?>>?>?>?>?>?>?>??9>?>>??><>?>?>>??>???@>?????@??@@@@@@???@@@?@?@@@?=?>???:?=????A?BAB@>>=:9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFFFKKKKKKKKKKFKKKFFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKKFKFKAFKKKKKKKKKA,AAKKKF@>=>?>??>??>>??>>??>>??>>;?>???>>>>3:>?9><>?>?>>>>;>>><>?<;>>9>>>>?><>???<>>>>>>>>?@@@??>>?@@@?8=@@?>-646=::&7-08<:=?=?;:83?-A3AA?@@<@@@A>:>A5&?@???@4>9=>???@:>??>>?:>>?>>>???@?>?>>>>>??>>???>>=>>>>>>>>>>>?>>>?>>>>>>>?>>?>>>>9>>>>>>>>>>>>>>>?>???>>>>>>??>>?>>>>>>?@?<;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:FF7A7<,A7FKFKF7KKKFFAAF<,FFKKFFA@@@?+?A@>??>??@@@?@?@???@?@@??@@?@@?@?@?@==@@>??@?????>>>?>???????>>???>?>????>???=>9?>>???>??>>?????>?????>>?>???>?>>>>@?>>?? MC:Z:146M5S MD:Z:146 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:#########AAAF/=??@>>-;>.??(7-::==?=>?=>>:?-&>==-5=.9=0%;?>>->>=?:2.<*.7(28)8*;6=??@48<4;?@).<>##################################################################### MC:Z:151M MD:Z:42A16T2A15A34T3A14A6A4A4T1 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:10 MQ:i:60 OQ:Z:A,FAAKKK,AK,FK,7,AAAAKAFKFKKFK,,FAF,@@>>=>;<<;?>9(;@@?@@??@@?@@@@@@@???@@?@?@@@@?@@@>>9?>>=??>??>>?????>?>???>?>>>>??>???>>@>>=?> MC:Z:151M MD:Z:0T30C30A88 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:###FA<;-;>6/0*3-/<;480;*>=:,6)=:><<=?=<>>=>?>>>>>?>:????>???>?=>> MC:Z:130M21S MD:Z:6A27T26A14 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:#######################################################################################FF<??>?@>5==26??9?=:=8>??@?>??=??>;>=???=?=????>>?=>=7=>>8??>?>>???=?@??=>> MC:Z:151M MD:Z:34T90 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:##################################################################A<<,A<,F7AFKFKKF7FF<7KKAFAAF7FKKKKKKKFKKAAKFKKKFKFKKKKKFKFKFFFKF7KKKFFFAFFKKKFFKFFFAA UQ:i:2 AS:i:120 +HT23WCCXX160402:3:1205:23378:55280 147 1 14804814 60 50S101M = 14804572 -343 GGGGAGGGGGGAGGGAGGGAGGGGGGGAGGGGAGGAGGTAGGGATGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGATGACAAGTGAATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACG ###########################################################################################>>>-8;=--8?<9==,??>=?>=8?>9??????>>???>?>>???=.=>>15> SA:Z:15,40369491,-,10S21M8I37M75S,6,9; MC:Z:151M MD:Z:20A80 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:###########################################################################################FFF,7AFAF<,<7F,,7KA>7>@<99:>5@@<>=8;?6?=:;@?>?@??:@>=>??>??>=>?=:?<-7???=6:==>?>?>>>=??>???>>?>?>9>>=>> MC:Z:151M MD:Z:0A34T115 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:############################################KKAK<7<<<7,,,7,,,7AFF7FF7AKA<<>>???>>??>>??>???>>>?>>???>?>?>?>?>??>>?=>??>?=?>?>>>?>>???>;?>>>?>>???@???>??@@?@??@@??@@???:???@???@???@?@@@==>?@?@@A@A5>?>@@AAAA@@@@AABABAA@?=:>: MC:Z:151M MD:Z:124T26 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKAKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAFAFKKKKKKK7A?>>=???>>?>>???>>>?>>???>?>?>?>?>??>>?>>??=?>?>?>>>>:>@@:<>>???@>?@@@@@@???@@@-9>@?9??@@???:@@>?@@?A@@@@@AAA/<<@A9:>>?@8+:3/2++A?@@BAA>BAB@BA?:+/=,::< MC:Z:151M MD:Z:52A91A6 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKAFAFKKAFFFKKKKKKKKKKKKKKKFFK,AAKFAKKKKKKKKKKAFKKFKKKFFKKFK,<@@@?@>@@???@?>9??@@?@@?@>?;?>@@?@@??@?>?@@@@@@?@<@5??>????>?>?>>9?>????>??>??????>?????>>?>???>?=>>>??????>??>???>????@@><;> MC:Z:12S19M1I76M43S MD:Z:52A98 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:1 MQ:i:4 OQ:Z:AFF<,,FKKFA=@./@@.A@??@@??@*7?8AAA?>9??=/@?>==6=?<-8<@?><@@>><<=;:@???@@=?=>>>????<>?=>?>>==??>>?>=1>??>???>>?>?>?>??????>=<> MC:Z:151M MD:Z:22A128 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:####FAAAA>A5=>><=@AA?8???3@?>?=:>??@???@@@@?@@??@@?@@@@@@@?>@?@>??????>>9?>>???>??>>?????>??>??>>?>???>?>>>>??>???>>?>?>?>????>>?>@@>>=? MC:Z:124M27S MD:Z:48A102 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:###########AAAA<7AKKAA7A<<=?@?=>>>==>><;>>>>>=>>>=>=>>=>>==>>=>>>=>>=>>>=>>>=>>==>===>>>>>>==6<>>,5??79>?5=>>;7=>?=8=??>>??>?????;??>>>?>@?>>??>>>7?=@@98=?<@7??@@@<-)?/=;><9## MC:Z:151M MD:Z:46A104 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFFKKKKKKKKKK7AFF,?@????@???=7@@=86?>?@?@@@@@@@??@@@????@??????>>9?>>??=>??=>?????>?????>>>>???>?>>>>??>???>>?>?>?>????>>?>??>????>=>?7=9>>?=:?>>==??>??>???>?>:;;??>???=?>>????>>??==9>=>>>>=>>=>>>>>>=>>>>>==>=>>>=>====>>>>>>=>>=>>>=>>>>>=>=>>=>>=>@?>>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:############FKAKKF<,AFFFF<,KFF=@9>70=4:?;A?@<*?>@>;?>===@=><+<.3;;>?5@>@::;@>=:@??<@??>;:>1=>>?>>54)?>=>?==4>>??>>>>?>:?>??>>?>@?>>?> MC:Z:46M24I81M MD:Z:1A3T8A22C0T0A111 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:40 OQ:Z:############################################AAA<=?@@>>???>?>???>?>??>??>>??>???>??>??>>???>>?>>??>>??????>>??????>???>>?@>>>:>>@@??=@?>>@=@@@=@@@@==;@?=@=?@?;>8>@??>??@@?==A@>A=A)7<=>>@A@@@A@?>=:9@ MC:Z:151M MD:Z:38A93T18 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKFKKKFKKKKFFFKKAKFKKKFFAFKFFFKKKKKAAKKAKAK,A???6@>?1@?@=@=@??>@?><>>:?;.>,??>=?>=??=????>??=:?=<==??>???=>:?=>>>>=>>=>>>>>>=>>>>>=>>>>>>=>=>==>>>>>>=>>=>>>=>>>>>=>>>>=>>==>>>???>=?> MC:Z:122M29S MD:Z:37A113 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:7F<,;.,:2:??2<@@?@@??@@?@>>@<@@???>>>@?@@@@>@?@>>:?>>???>??>>?????>?????>>?>???>>>>>>??>???>>?>?>?>????>>?>??>??>>?>???@?>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:#################A?>=@??????>???>?>??>??>>??>???>??>???>???>??>>??>>??????>>??????>???>>??>?>;??@@??@@??@@?@@@@>@@@???@?@@@?@>?@<@@@@@??@@?@@A@?AAA@@A@>A@A@;;A@AA@>=:9> MC:Z:151M MD:Z:36A114 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKFKKKFKKKAKKKK>=>8>>?>>??>>?=.5,1?;>>,90&983>97>,9>1-,<97>4-99>?>>@?-&+=>@@)9-53.))=4>99?):)).'.'@6@???################################################ MC:Z:151M MD:Z:40A40T5T1T14 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:4 MQ:i:60 OQ:Z:AAFAFAF,FFK?>>???>??>>?>>??>?>?>?>>??>>???>>?>>>?>>??????>>=??@?@?@@@?>;@?=>:?>61=9>@???@?@@@?>@@@??>@>A?=>?9@A@AA@@@A@A@A@A9A?.+?8?@:4?9BBABBBB=7A@####### MC:Z:151M MD:Z:26A124 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKFAKKAKKKF77FAFKKKKKKKKKKFKKKKKFKFKFAAF..*8@9=:@??<=??>@@@@@>=4>=?@?>5?@??@@??:@??@@???@>>@????>?????>>?>???>?>>>>??>???>=?>?>?>????>>?>??>??>>?>??>????>??>>???>>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:########FBA?AB@=@@@A@@@AAA@?@@@@A?@@@@@@@??@@@???>@@@?@@@??:@??@@@?@@???@?@?>@????>>?>???>?>>>>??>???>>?>?>?=????>>?>??>??>>?>??>????>??>>??>>?>??@?>=>? MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#KK==?@?>?>?>?>>??>>???>>?>>>?>>??????>>>???=?>???>>??>>>9>>>?>>>?>>>?>???><>?@>?>@?@@@?@??@@@@?@@???@?@?@?@@@=>?@?@@?@?@@A@AA@AAAA@A@@AAA@BAABAA@@?<99@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKFKKKKFKKK UQ:i:0 AS:i:151 +HK35MCCXX160204:2:1117:5893:31177 147 1 14804861 60 151M = 14804828 -184 GAAGAATGAATCTGTCGAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATT ####>8>:<.:A@:/&*08:>+<==;).-.@@A8?=@@=<7)-<:97=?9>?+66-?>9>??????>????9:>=:>??=?=87>??>;??=<>>???>?>>>>==>>>=>>=>>>>>>>>>>=>>==>>==>>>>>=>>>>>??<== MC:Z:151M MD:Z:13A2T134 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:####A7<<<,7KAA,,,,>=>76>&>&$'-,;>><2;:847,6=7>6#&-,17',77-1<0<-(,(9>43;?############################################################################# MC:Z:21S130M MD:Z:26A1A31T1G4T6A4A23T8 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:8 MQ:i:60 OQ:Z:,,AAFA,A<<,F7,A7A@AAA?AA@>@@@;:?>?>?>>>>??????>??>???>?????>?>??>??>>?>???????>??>>??>>?????>>??>>???@?>>>=> MC:Z:22M24I105M MD:Z:8A142 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:1 MQ:i:24 OQ:Z:FFKKKKKA?=@AAAAA@AA?<8A:@?<9?@<@?>;@?@@@@?@@?@@@@@@?@@@@?9?>>???>??>???>????>>?>??>??;7?>???????>??>???>>?????>>?>=>????>>??>????@?=8>> MC:Z:151M MD:Z:117C33 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:<<=?7=)?==,?>>=?<>:7>-?*?=?=6>:2> MC:Z:151M MD:Z:13A16A9 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:###################################################################################################################FF<>>?>>?>>>>??????>>>?><>>>???><>=>>>9>>>=>>>>>>>>>>>?<><>>>>>>>?>>>?>'*<9:>???????@????=??.5:??@?@?86,6?=?@>@?>>>>>?*(6@>?<@@@#:5;</3.(<7> MC:Z:151M MD:Z:71C46T9A17C4 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKFKKKKKKKKKKKKKKFAKKKKKKKAKFKKKKKKFFKKKKKKKKKKKKFFAFKKKKKKKKKKKK,7F<?==@??>>??????>>>???>?>???>>??>>>9>>>?>>>?>>>?>?>?>????>>>>>?5=>?>>>>>?>??=?>?>???>????>>>??@>@?????@@?@@@@?@@??@@????@@????@??@@?@@@AA@@AA@A@@A?><;9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF7FKKKKKKKKKKKFFKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1112:8684:53557 163 1 14804882 60 151M = 14805044 313 GGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCA >;=>>?>??????>>>???>?>???>>??>>>9>>>?>>>?>>>==???;=>@@???@?@@@?@?>@@@@?@@???@?@?@?@@@@??>>@@?A@=@?<;???@AA@@A@AAA@AAABBA@ABBA@BA@@ABBB2?BBA4A:B@BA>::<: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKAKFA7AAFFKKFFKFKKKKKFKKKKFKKKKFKFAAKKKF7@=7?@@@@@AAA?@>@????@?@@???=>??@@?@????=?>???@@@@??@?@@??>?>?>??>=??>>??<>??>>?>??>>>??>>??=>=>??>???>>?>?>???>?>@>>=?= MC:Z:151M MD:Z:11T139 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:AFFA,7@A@<>@>60*@AA@?:?/=?=:????????????@=@???<=5=>???=<>99?<<>>>?>>>>>>>?>86=?>??>?>>>?>?<>???>>??>>??>>?>??>><=>6>??>?>>??>?<>>>?>?>???>?>?@?>>@> MC:Z:151M MD:Z:14T136 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:FKKFFKFKFAFA7,,KKKFKFF,FKAKKKKKKKKKKKFAKKKAKKAKKKKAF7FFKKFFAKFAKFAKKKKKKFKKFFKF<7FKKKFKFKKKKKKAKKKKFKKKKKKKKKKKKKKKAFF7KKKKKKKKKKKAFKKKKKFKKKKKKKKFFFAA UQ:i:11 AS:i:146 +HJYFJCCXX160204:8:2121:11363:38930 99 1 14804888 60 151M = 14805212 475 AAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGT >@>?@@?>>>???>=>???>>>>>>>9>=>>>>>>>>>>>>>><>>>>>>>>>=>>>?>>>>>?>>>9><>>?>>>????>>>>>?>?>>>>>??>>????@@????@??@@????@@9@A@@9=@A@@@/:B@@@>>;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:A?@@>>>???>?>???>>??>>>9>=>?>>>?>>>?>???>8???<>>?>>-=>?>>????>??>>>?>?>????@?<=@?@@?@?6>@?@@?@@@>?@@>@@@?@@?@@???@@?@@A@A@A@9A@ABAABAB@)@;8<# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKFKKKKA,FKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKK7FKKKKKKKKFKKKFKKKKKKKKKKKKKKKKFKKKKAFAFKKK?>?>?>>???>?>???>>??>>>9>>>?>>>?>>>?>???>????>>>?>?@@?@??@@@@?@@>??@?@?@?@@@@??@?@@?@???@?@@@?A;>?AA@?AA@AA@AA@@@AA?@@9@BABBBABBBAB?6A@BB?@B:9<; MC:Z:5S146M MD:Z:146 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKFFKKFKFKB(/*/:9@@2728?>@@@;2-=?@@>>9/?@??68<8@?@@?>;:?@?@@?@@@@?>>>?==??>>=?>>?>>?=9??>???>??>?>???>?>??>? MC:Z:151M MD:Z:11T11C3T14T16C91 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:A<8>A@BBB?@A@=8/@A@AA?>:+@@:=@?@>@?>?>?@@@@@9@@@?>??@?@@@?@>???@@?@@@>??>>>@>????>>?>??>??<=?>??>????>??>>>?>>?>???>>??=>??>?>>??>???>??>?>???>???>=@=?>?>???>?>???>=>?>=>&<>==>>>?>>>?>?>?<==>?>>>>>9/2=?>>>>>?>>?>>>?>?>?>????>>>>>?>?>=>>>?@=<==@=????@?????@@????@??@@??=??>??@@@-4=@@@'?@A?/?9@@=<;3> MC:Z:151M MD:Z:130G5A14 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKFKKKFK,FKFFKKKKKKKKKKKKFFFKKKKKKK7,7FKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFAFAKAKKKKKKKKKKKKKKKKKKKKKKKFKAFKKKKK,=;>6-?<=8>?>5-=.98*><:)<-?>1++;>=?>??>>??==15=??>>>><5<>>> MC:Z:151M MD:Z:6T3T11C9G5A7A2C16T53 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:8 MQ:i:60 OQ:Z:##########################################################################################KKFAAF7,KAF7KKF7,F,A<,FA7,F,KK7,,&(;@<8,-178<&,;,-8(,(,(,:(&=97/$(6:;15,-89>:89?:,+-050=8(35,+,;>,,,683?>>- MC:Z:151M MD:Z:5T15C2A27A5A23A3C13 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:7 MQ:i:60 OQ:Z:#############################################################AA7A<,<,F7<(A(,F(,FKFA,,7AA<,,A,,A,,,,,,<,(F@@<>@@@=@@><>7=)1=?>?>>??>6,5,??>?>:?>>?>?>>?>?>>;>>=<> MC:Z:151M MD:Z:6A11A0C26C7C7A6A81 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:##########################################################################A7KKKKF7,??@>>>>>>>9>>>>>>>>>>>>>>>?=>>>>>>>>>?>>>?>>>:>?>>>>>>>>?>>>?????>>??@?@>.=??@@??????????@?????@@???@@??@@??@?AA@@AA@@@@>>@@A@A@@@@>AAAAA@AAB@A?:7## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?A=>AAA>AA@7=@@@AAA9@9?@=@@A@?A@@@??6?>??@?????????>???>?=@>@@?>?;?@?@@???@>???=9=?>>?>??>>>?>>>??>?><=?>?>>>>??>>=?>?>>?>>>>>?>>>>?@>?:?< MC:Z:20M1D124M7S MD:Z:0T150 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:#####FF<AA@AA@??>????>????>??>>??>>?>???>>==>>??>>>>??>???>??>?>???>?>??>?>?>>>????>???@>?=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:KKFFKKKFKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:1216:11403:69379 99 1 14804904 60 151M = 14805327 574 AAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATC >@==@?>>>>9>>>>>>>>>>>>>>>?>>>>>>>>>>?>>>?=>>>>?>>>>>>>>?>>>????>>>>>?>?>>>>>??>>>>>>>>>>?>>>>>??????@??@@???>@@??@@????@??@@?@??A@@@@@@@@AAA@AA@A><;;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFF UQ:i:0 AS:i:151 +HT23WCCXX160402:3:2220:6258:70943 99 1 14804904 60 151M = 14805026 273 AAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATC ??==?@?>>>9>==?>>==>>>?:???;=>>?>>::;?==??=?>??>>>?>?>?>????;>>?>.<>=@???@9==<?>???@>@?@>??@@?A;AA?@@>AA>A>3.<@A:A@@A?:4=;1:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFFKKKFFKKKKAKKKAFAKAKKKKKA==1>>>9>6><>>8>>>>>>>>?7<;><>>>>>?>4=9=>>>>?>><>>>>>?>>>????>>>>>?>?>>>>>??=>>><<>>??@>>>>>@@?>?=@?>=<<<??@??8??@??@?????=@>@@A>@>>/?4*9=# MC:Z:10S141M MD:Z:143 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:A0,:-;7('?5.29<:6&$''(6,4('7<%/8:'#&)&&.-')/.-;/---0--(-9-.9:>;''&-).;/:?<73<=>9=?>409############################################################# MC:Z:151M MD:Z:9A8T3A2T4A6A1A5T0T11A8A24A2A7T7A0A7A0A4A8A6 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:20 MQ:i:60 OQ:Z:,A,,A,FF,,FA7@@@@@@A@@@>@?@???=@??@?>????<@?;:?????????>????????@???>>@?>???>>??>>??>>>>??>>>>>>>??>>;>?<<>;8>>>>?><><>?>>>>>>>>>>=>??>9>= MC:Z:143M8S MD:Z:141 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:?@??>??>>??>>?>???>>??>>??>?>>??=???>??>?>???>?>??>?>?>>>????>????>?>>??>=>;=>?>>>>>>>>??=>>>>>>>?>;>=>?>>????>>>>>>>>?>>>????>>?>??>?>=>?>??>>>>>>>>>??>>??==?>72??>@??>@@@<7?9?==@@??:@@?@><6;@@?A-8A>-'-68-;879::AABBBABBAAA@@@@@AA@A@;@@?A@@@???@?@?@?@@@@??@?@@?@@??@?@@?@@@@?@@>??@>>@>???>>??>>??>?>>??>???>??>?>??>>?>??>?>?>>>????>????>?>>>?>>?>????>?@@>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAAA7KKKKKKKKKKKKFFKFKKKKF89??=AA@@A?8?@=@?9?@@@@??@?@??@>??@?@@:@@@@?@@???>>?>>@??>>??=>??>?>>>=>???>??>?>???>>>??>?>?>=>????>????>?>>>?>>?>????>???@??=?? MC:Z:90M61S MD:Z:92T58 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:2 OQ:Z:FKFFKAKKKKKAK>@??>????>>>?>?:=>?>>????>??>>>?>?>?>??>?>>?>??>?>=>?>??>????>??>???>?@>?@>?>@@?@@@?@?@@@?@@@?@>@@?@@@?@>=@?@?=??@@A@A@AAAA.+A@@A@@A@<8>?AB@A@>;99> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKK@?7AA>@9'?@?@@=@@@@?@?<86:>=@@@?7(=5@?<=9>9>?@9==++@@=0@?=@@>?>7+5+;?;6/???>,8>??>?>?>>?>????:<;?>?:>@??>== MC:Z:151M MD:Z:0A28T80C40 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:3 MQ:i:60 OQ:Z:#####FAA>??>>??>>?>??>9>?>>>??>?>>??>?>>>>?>?>?>>>?>?>>?>>>>>=>>>>??>?>>>=>?>>?>????>???>>?>@??==> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:7FKKF7,<7<@?>=>==>>>>>>>==>>=>>>=>>>>>9>=>>=>=48>5?>>>??=??;==??879>>?>>>??>7????????>???>?>???7=>6:*;@@@?@@@@-;=<3@=;@?>@<>?07@A8AA8.89+A8@A=*,<9=6 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKK7AFAFKKKKKFKKAFFKKAA?@??6?@?:=?@@??@?@@?<@@??@>=?9@??=?@@@??@@=?>?>?>>>?>??5>?>>>99?>>?;?;9>????>????>?>>>?>>?>?>??>????>?>???>>??>??>>??@??>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:##FFA<,<,,<,FKKKKFFKFKFFKFF7KKKAAKFKKKKKKKKAKKFKKFAKAKKKFKKKKKKKKFKFKKKKKFKKKK7KAKFKKKFFKA7KFKKAKF7KKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1118:12144:47527 147 1 14804940 60 151M = 14804802 -289 CTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTTCCTTACTCT ############AA:A@BA@@A@@@=@A@B@@AA@?@?A?>8?@>AA?AA?@<?@<4??4.=>>>@>=)7>:->-<>=@??==<@?@=?@?@??=????>????>?=>>?>=?>???;>????>?>???>>??>??>>??@>>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:############AA@>A=@AA@@A@??@@@@@?@@@@?@@@@??@@@@@>@@@?@?@@@>@?@>@@>@???=@@@@????>?>>>??????>?????>>??>??>>????@??>>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:KKF777KKFKKKAFKKFKKKKKA>@???>??>>>?>?>?>????>>?>??>?>>>?>??>??>?=??>???>??>??>>>??>???>?>???>@????@?@?@>@?@?@=?@?@?>@@??>=@?>?=>???@7;9>>???+??=9=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKAKKKKKFKKFFAFKFFFAFKKKF7A7AFFFF,?@?>>>?>?>?>????>>>>>>=>><1=>??>????>??>>??>>>>??>>>>?>7:><<<;>@??@@?@@???=@@?>>?@@=@99?;@AAA@A@A@@?;BB)A@A>AA@=A90:=8?=6<# MC:Z:151M MD:Z:141C9 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKK<7FKKKKKKKKKKKKKKKKKKKKKKKKKKKA7FAAFFFKKKKKKKKKFKFKKKAFKKKKKKKKKKKFFKKKAK7AKKKKKKKFK<7AAAKKKKKFKAFFAKK,AFKFFAAFF7,7A??>>?>?>?>????>>?>??>?>>>?>??>????>??>?>?>??>??>>>??>???>?>??;>???>???@>?@????@@?@?@??>@=@??@@@@?@???@??@?@@@@?@@@@@@>@A>@@AA@AA@?A@A>BA?/=@B87;8:@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKAKFKKKKKKKKKKKKKKKKKKKKKKKKKFAFKFKFKKKKKFAFFFAKA<,<>?@@>?????>?>??>?>>>?>???????>??>???>?????>>>??>?????>???>????????>???>?>??>?@???@????>?@@@>@<@?@@?@@@@@@?@@@@@@@@@@?@<<>@A@1@??@A@AA@AAA@A@AAA@?<::> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKAKKKKKKKKKKKKKKKKKKKKKKKKFAFKKK7FFFKKKKKKKKKKKKKKKKKFFKF UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2112:28737:36680 99 1 14804959 60 151M = 14805194 386 AATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAGCCTAGTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTCTTCCTTACTCTCCCTTCACAAGCCATAAAT >@>>:????<=>>>?>=8.18;??>????>>>=>>>??0>>;%'9>>(61<>?;>??>9?>?6;7.'?:>?>>>?>>?>?=>>?>9=<98.1;-5.9><><=><>7>>;?5?:)@.*>@1:@@6.99>*::################ MC:Z:151M MD:Z:46A4T80T18 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:3 MQ:i:60 OQ:Z:AAFF;?;3'/:.=@@@;8==,;9?=>=..7?>1.,8-,<.-7-((-:=9=<1=?>:>??:9>=-:>>???:@>?=>> MC:Z:151M MD:Z:6T3A5C10T11G3A22A6A73 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:8 MQ:i:60 OQ:Z:##########################################################AAA,,<<<,<=?,<<&)-78<58>>(>+,/<>5<-.5<(.,.59'4/8,<=>8=9>;<>77:))9=?>=4.-6.>4=*)>4>.(:+.(-)-..>??>6=;:?:?-,;=5-;>@?>@@2A??:A@5<########################## MC:Z:151M MD:Z:14T11T34T28T17T17C24 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:6 MQ:i:60 OQ:Z:A,AFF,FKFAK,FF,,,A>??>>=>>=>=49>=>>>>>>>>>>=>>>=8>>>>=>55;=>?>>>>???>?<>?=74<=>>>>?>>;;;,=?>?????>=?6?>??<<<<2/=6;=?:A@;@<9?@*.(?3@>9AAABB>AB@AA@AAAA@A?@@AA@@A?@@@??@???@@?@??@@?@@>?@@?@?@@@?@?@@?@???>???@?>????>?>>>?>>?>????>????>?>??>>>??>??>>???>?>??>>??>?>????>?>???>??@>><:A@A;9/=0*?@?@.@<@@?>@@????@@???>???@@?@??@?>>><>:??@??>?>?>>>>>>>>>>>>=>>??>?>>>>>>>>>>????>???>>?>???>>??>??>>???>?>??>>??>>>>>?>>>>?>>>??>?@>=>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:7FA<<=>=<>?>??>????>??>???>??>??>>>??>???>?>???>???>???@??@@?@?@@?@????>?@@@?@@@@?@???@?>@???@=?A>AA@A@A@?@AAA@A@@AAA8>@@BBA?B??99@BA98B:8@=+=A:=?##### MC:Z:151M MD:Z:150A0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKFKKFFKAKKAKKKKKKFFFKKKKKFFKKK7A><@???@@;;(@@<@?>(;?@>?@@@@@7?=,9,,99:9,-??>:9>'>?<:+=7=6-=6><=,85.?>?>>8?>>>>?>79)>8/= MC:Z:151M MD:Z:4T66A36T42 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:3 MQ:i:60 OQ:Z:#################AFKKKKFKKKA?=?<=>87=?>???=?????>?>7==???>8;4=??>???>?????>?=@:@?@@@@@?@?@@@>@@?@@?@?@1>4=?;4:?@@@@@??>>;>>@A@AA.>77==@A@AAA2@@<=A@?6/97AABBBBBABABABB@@:=798 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AAFAFFKFKFFFA@??>>?>?>?>=>?????>?>?18??9;??????>???>?>?0>;<>455==7=>@?@?=?;>>@??@1=@@?@?7;$(8:15/:4;:=<@@=>*7=9################################################ MC:Z:151M MD:Z:82T22A13A15A9G5 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:5 MQ:i:60 OQ:Z:,AFFFKKKKKKKKKKFFFKKKKKKKKK7AKKA@A>@@@8@@?????==?@@?@@??@@?@????>>?>?>>>>>??>??>>??>>>>>??>>?>?>?>?>>>??>?>??>>>>????>????>?>>>?>=>=>?>??>???>>>>??>>>>?@><=>> MC:Z:37M1I113M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:KKKKFFKKFKKKKKAKFK?@@@==??@@?@???@?@@@@@?@@?@>?@???@?@@??@>?????>?;??>>???>?>?>?>??>?>??>?=>=>??>????>?>?>??>?>>?>?????????>??>>???@?===# MC:Z:151M MD:Z:150T0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AKA78;?A>AB@BA==A@@?@=A1972&@;;A@@AA?AA??AA@A@?>>:AAA@@?@>9>@?@??>>>@@?@@??@@?@>@@@@?@@@@@@?@?@@@@?@?@@?>>??????????>?>???????>?>????????????>>??@?@>< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:?AABAB@B@AAAAA@A?:==@@A@@AA@>@??<@?@=@>=@>??@>@@=@@=>@??>>@=??>>?????>?>?>??>?>??>??>????=????>?>?>??>?>>?>?????????>??>>?????>@@?=?>@>?>?????????>?>??????>??????>???>?>???>???@?>????@?@?@@@@@@?@@?@@@???>@A@?A?AA?A@A@@:@A@AAAA@A@A@@AABA@:@>>@ABBA@AAA?;99@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFKKKFKKKKKKKKKKFKFKFFKKKFKFKKFKKFFFAKKKKKKKKKKKKKKKKKFAA<>??>??????>??????>????;>??>>???????????=?>??????>??>???>?>?>????>@@@@@@?>@@?@@?@@?@@@@@@@?@@@@@>?@@@@?@?<@?@@@@@?AAAAAAA;>AA@@@A=)7<>??<;<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKFFKKKKKKKKKKKKKKFKKKKKKAKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKKFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKFKKKKFKKKKKKKAAKKKKFKA,7AAFKA8;8@?=7>><=>0-=8:?>(7<-7>??;+><=9<>?>>3?><<<>?>?>>???>>=>?>>>>;?>:7??>>=>>?>?<<>; MC:Z:58M1I92M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:7A<99=78;:::1?:(??A@@@=@AA@A???@?@?3?@6788@@<=???@@@@?@@??@@?@?@?@@?@@@@??>?>>>??;?>??>???????>????>?>????>?8>?>????????????>>?????>???>?>?-?????>?@@>=?; MC:Z:151M MD:Z:13A19T117 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:2 MQ:i:60 OQ:Z:7KFFA7AAAA7FA,FFKKKFAKKKKKFKKKKKF87<>@8A@::??6@A?<:<@??A8>?8=,:@?@@>?@@?@?@?@@?@@@@??>?>?@??>?>??>???????=%???>?>????>?;>?>?????????>??>>?????>???>?>??????>;)@@==?; MC:Z:151M MD:Z:93C50C6 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:2 MQ:i:60 OQ:Z:7A<7KK?>??@>@>??AAA@@?:=;@@@??>@?=>=@?>?@@?@?@>=????9=@??@??>>><=-@??@@?@@>@;9=@????????>?>>?>?>???????>?>>>???>>>??>>>>>????>?>???>??>?<;< MC:Z:66M1I84M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:####FFFFF=@???>>?>>?>==>>??;>6=>8>><>?<>>?>?:?>9><:4>>>>;?>'<4=@??=><-,<<>?>@?=>@><@->??@@@-9;=@@A?A?A>A*?.@=>/:.(0=?57:8 MC:Z:151M MD:Z:61A72A16 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:2 MQ:i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arkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF< UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1215:22698:57512 147 3 17077050 60 151M = 17076365 -836 CCCACCTGCTTCCTGCTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAG 395083AB>//9*0%*@==9/*/A?A?>?=+.ABA=??89A@@A:<*//=/<=:?@?@?6@@>8>@>@@?@>@@?>-<.@@@8@@>@>?>>?>?????=?>??>>?????=???>?>==???>?>??>???????=>3> MC:Z:39M3I109M MD:Z:15T135 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:7A<,<7AKA,,<,,(,FAA<,,,A?<>????;?>???=?-5==>?;7=<>>=??.--<??<>=*20;4=;*<.>>%.6.8>?5-+1<=4*:=?@)..7?@A0>@8>@@8@A8@A@@5>A84*/..>@=@@.>A###################### MC:Z:151M MD:Z:52T18T0G17T49G8A1 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:AAFFFFKFKKKFKAKKKKKFF,7FFKKAAAAFAFKK,,,AAKAKKFAKAFKF,,AF,7,A8=@<>??>>>???>9>>>==???8>>>>??:==-=??>???>?>=2>:>>=>>3<<<;='>?29:;?6=@>@?@?7>7?>>7?AA@>//77><;:>>=*8.84=>>@@>B/..5A:@@1>?@??>?>???>?????>????>>?>???>??>??>???>>>?>??>>?????>?>?>?>;?>??>??>??@?>@?@??@?@?@@?@?@@?@@@@@@@@@?@@??@@@???@@@?@@@AAAA@@3AAA@A@AAAA@@+@BB@@?<:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKA7FKAKKKKKKKFA,AKKKFKKKKA UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:1218:16711:37120 147 3 17077057 60 151M = 17076665 -543 GCTTCCTGTTCCCCCTTTTGTGCCATCTCCCATTTCTTCCTTCGCACTGATGCTTGTTCATGGTTCTTAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTA ######################=@@@@:=*=099@=>.)5..&'*0<.7>=5*.>5>=>:??5;=:;,@<<=;8?1=;--&:8=>>=/?=?>?==?7/:<;>4><9???6>58=<?>;:>;?=== MC:Z:151M MD:Z:13A29A23G83 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:3 MQ:i:60 OQ:Z:######################AF;<@?>>>>>>>>>>>>>>>>>>>?>>>>>>>>?>>>?>>>>>>?>>>>>?;>>>?????????>?@@?;??@>?????????@@?>>?@?@??@??@@@?@@@@@AA@@@@?)<>?@?A@?>@@@AA@AAA@@A?@@:AAA@<>?<:6< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,>=>?@>?>???>?????>????>>?>???>??>??>???>?>?>??>>???@@?@?@?@?=@?@??@@?@@@@?@@@@?@?@?@@?@?@@?@AAAAA@@A@AA@@AAA@@@AAA@B@ABBBBABABB?ABAABBABAA?BB?AB>>;84# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKFKKKKKKKKKKFKKKKKKKKKK9;?>@@AABABAAAA?AA?@@@A@@@@?AA?>@??@@?@?@?@@??@@@@@?@?>?@>?@?@@?@@?@?@????@?>?>?>??>?>>?>?????????>??>>??>??>???>?>>????>?>???>?>?????>?>??>??>@@?=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:7AKFKA<@04*A?9AB:?'??939AB@=**.9:A9/;=>?9-@@@@@@@:?=>97.?7-0?1@?;/9-,;88;/??0=?@??=????@=>7@>7=<=5=:8>=5<>>><==:->>=='8=94-:>5??>>>?>??>??3>9?:>>> MC:Z:151M MD:Z:4G34C82T28 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:##A<7):>@@?@@<>??=?=8=:??8?>==?>?>?=??>?>=.>;>???>>?=>>>>=>==>=>>>>=>>>>>>>==>>>>>=>>>=>=>>>>>>>=>>>=>=>>>>>=>=>>=>>=>?@??>?? MC:Z:74M1I76M MD:Z:20A130 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:1 MQ:i:60 OQ:Z:AA7<7==?>?>>>>>>>>>>>?>>>>>>>>?>=>?>>>>>>?>>>>>?>>;>><;>>>>>?;>>>@>??????=??@????@@@???????@?@AAA@@@@A=@A@A;@?7<>87? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AA@@A989@ABA<79.ABABB@@=????@@AA@@A?7AA@A@@@AA@A@@A@??<@@@@<@@@>?@?????????@?@@?@@@??>??@??>>???>???>?>>??>>>?>>>>;?>??>>?>?>>9&=>>???>?>>???>?==>>= MC:Z:151M MD:Z:130G20 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:#AKKFKKA<);<6(><:>><@>>-<@@?2>;'.69>==>?><>>??>>>>>?>>>7>?>>>??>>>==??>>>?>>>>;>>(>>>?>>>?><>?>???;?>>??>>?>=:>< MC:Z:151M MD:Z:0A5G11A11A1A10T107 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:6 MQ:i:60 OQ:Z:########################################AA<,K;?=9(AAA@@:?.9=;:9@?@=?????@?@?>?.-@?8-.@@=>?@???@??=:71%6)@?@=>:-?@=;=/@@??>@>>;>=;-?>8>?>>??>?>?>?>?>>>??>??>???>?>>??>>?===>< MC:Z:55M1I95M MD:Z:11A8T58T1T25T43 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:5 MQ:i:60 OQ:Z:############A7AFAF<7,KKKKKAA,A=;4/)7*=9789:?@>7.7.=0>=.%(>-)=?@@>><@6=7@?71?@>9:(,->@@@@>=@>@6@>87>?>8>0*<@?=9?99(9???;<(;???6???;?=:>>9>:<:8>>4?>?????>?>;=8::;?>?8>6-8>6;>>><@>=?> MC:Z:98M1I52M MD:Z:27A56A52T13 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:3 MQ:i:60 OQ:Z:FAA<,,<,<7<7AAFFA7,<,A7FA,,,F,,AKKKFFAKAA7KF77KKFA<,,,FKKKKFFKFKAKFA<=5>@?>>?>???>??>??>???>?>?>>=>=???<=>?>?>?9.5=?:>?=9@8>?;2<@@,>?@;>?<:>@?7;?><<=?@?A=AA??;AA?@@@1+??4/+@BBB@@?B?8>;### MC:Z:151M MD:Z:125G25 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAF/80;@?(/=??:28.@<8>>??-7;4=>>?0>>??;<>-7<:?8;>:@=?7?<@>>>?=?>?==;-;?=:>25>>?>??8=>>?7=>>??>>0?>=;> MC:Z:22M1I128M MD:Z:51A99 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#############################A7AA,AKKKF<,,,7<,<,?>?><>>>??=??>>??>>>==9?>>??=?>>>?<>?>??>=?>??=?1>=?8==<:>@@????@?=>4?=@@@=?=@==>@>::?@@3<<>?>@8.>?:?=9&@(@?(?=@????@?+;?08AA################## MC:Z:151M MD:Z:0T133C3T6T5 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:4 MQ:i:60 OQ:Z:#9,5==?>?&<;?8;??=?:?>?>(??>%9=?(9-<8,'9+;;,:==@?==>-;-6=??@05@<).6.4>9?8?.:9(9?:':>.=<-,.;=?8>'7:;A00?################################## MC:Z:151M MD:Z:38A3T9T25A22A7A7G8T4A9A3G5 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:11 MQ:i:60 OQ:Z:A/>A6@A53??9A?3>A?>A@@>?6AAA@AAAA><@@?@@??5?@?@@@@@@@@@?@@??@@@?@?@@@?@??@@@@<>=???;?>?????>?>??>??>???>?>>???>>>??>>??>@>>=<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:############AKKKFF@@AA@???:;????>>>>?>>>?>?>>>??>>>>>??>>>?>?>>>?>?>???>>>??>>?>???>?>>>??>>>?>>>?>>?>>?>?>@@>8@? MC:Z:45M1I105M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:KA7A>A7;5.BA@?A9/.9.0+.//*0*@7./*>=>AAAA>?9>??<>@?@?@>@?><@@>>0:@6)?>=????>>?>>???>>>>?>?==>:>>>4:>?>:4>3>??=>=<> MC:Z:79M1I71M MD:Z:1A5T24G9T57A50 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:########AF<A?>>?>>>>>>?>>>>>?>>>>>>>>>>>>?>=??>>>>?>?>>>>>>>>??>>>>?>?>>?>????>>>>>>??>>>>>???>>>?@@????@@??>@???@???@@?@@???@?@??@?@@@@?@??@@@@?@A@@@A@??<;;? MC:Z:151M MD:Z:0T150 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:#AAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFK UQ:i:2 AS:i:150 +HT23WCCXX160402:3:2104:17452:1344 83 3 17077097 60 151M = 17076979 -269 TTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATN @8:;??AAAA@BBAA@A@@@AA@A@AA@AA?A@@@?@@@@?@?@?@@?@??@?@@@@@@@@@?@@??@@@?@>@????>>????>?>???=?>?????>?>??>??>>??>?>>???>>>??>>????>>?>?>?>>?>??>??>?>><=# MC:Z:151M MD:Z:150G0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:KKKFKFKFKKFKKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAA# UQ:i:2 AS:i:150 +HJYFJCCXX160204:5:2106:30634:4210 147 3 17077099 60 151M = 17076945 -305 CACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTT :>7;??/9=AA:>@;5A@A>><@>@@=>?AA>@7A@@@A?@>=?@?@??@@@????@?????????@@??>>>>?>>>?>>>>=?>?>>>?>>>??>>?>???>?>>???>>>>>>>?>>>>>?>>>?>>?>??>??>>>???:?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:A>>'@>A@>??;-8??9$'77,,-1=<867(=@?@>=@@@@>(@@@??@@@@@?@@@?@=@8?6:;;>??>??>??4==31<2?>??>??????>><>?>>=,<->7>9-?>?>>?>??>??>8>=-.6@=>9<> MC:Z:16M1I134M MD:Z:9G5G15T2G8A11A37T1T55 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:8 MQ:i:60 OQ:Z:###########KAAA<,FAKFFFF<,7FF<,,77,,,7AA<7A,FKKKFFKKKKF,KKKKKKKKKKKKKKKKFK7F7AAAKKKFKKFKKAFA<7F7KKKKKKKKKKKKFAFKKKF,A,F7FKKKA,KFKKKKKKKKKKF?@?@@@@@@@@@?@@??@@@@@?@@@???>@??@>?>???=?>?????>?>??>??>???>?>>>??>>>??>>????>>?>?>?>>?>??>??>>>?>?>?@?==?? MC:Z:32M1I118M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FFKKKKKKFKKKFKKKKKKKKF<@A?@=-;(?=A?.)??.8--)->A?>->>>A?A@A:6-->=;6=/@@@<>@@>;???>=@??@?=9>;@?@@@@@?@?@@8><5@@@5?9,=??>>>??>>=??9>>=>8=?>>>>??>?>>>>?>?>?:?=>>>. MC:Z:151M MD:Z:1A3T16A128 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:3 MQ:i:60 OQ:Z:######FFF7;=???>>>>>>?>>??>>>>?>?>>>>>>>>??>>=>?>?>>?>????>>>>>>??>>>>>>>>>>>???>>>>??>?>?>>>@??>??>@@???@?@?>??@????@??@?????@???@??@?A?:@@??9>@@?@@@>A@A?><::A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKAAFKKKKKFKKKKFKKA< UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:2119:7588:36786 147 3 17077111 60 151M = 17076884 -378 TGTTCATGGTTCTGAAAGTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCT <50<6@@;6;A?@:002'???;@??@@A@A?@A>=:A?<=8@@==6>;8><5??>;@@@?@?@>>0@?@?@@@???@?>@?>?7?>?>>?=?><>??>===>?<>?>=;:93.;(?=<>><>?>>>??>>???>@?==== MC:Z:32M1I118M MD:Z:17T133 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:AA,772>6<=>=<>>=>>6:>>;>>>=7==>7>:>99;<'>=6::6>>9;6--(<<'>,<6<-,5<>,,,5?><<-.9<@5>)?:@@=9<<8+:;5?4=@@??-8)>=-8<:=9=58;&51(===:=9?>??8:3:==>6?>?:>(>?@>>0?> MC:Z:49M1I101M MD:Z:11G7A33A93 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:#################################################################K7FFAFA,,7AK7F,KAKKF>===<>??>??>????=???>?=??>?>?:=??=?5>>??>??>>??????5>@?@??@6>??@>?@@?@?@?@@:<2<79?=;?@*<>@>?@A?.+>9>=?<2)9&5<;?>B@+1@<@A=A>ABB>>88-<:<.->:@6?###### MC:Z:151M MD:Z:90T17G34T1T5 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKKKKFFKAKFKKKFKKKKKK7FKKFK7FFKKKKKKKKKKKKK7FKKKKKK7FKKKFFKKKKKKFKKAF7A7AKAAKK,:7<>@?@@>>AA@@=?AAA=A@AAAA?@??@?@@@@@@@@@@@@??@>@@@?@@@?@?@@@@@@@?@??>@?@@?@@>?>??>??>??????>????>>???>????>>?>?>?>>?>??>???>>??>>??>>???>???>??@@=<>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:FKFFFKAKFAAKKFFAFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFA=BA/AAB@A79==3*?4B?>AA@77@AA?@@?@@A??@>@@@<@?@@@@??@?@??=@>@@@??,?@@??????>>??>=>>?>=6?>>===?>?;>=>:==>??>>???>?>?>?>?@>>>>> MC:Z:151M MD:Z:19G130C0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:####FAA,,,FFA7,A???>????>????>?>????>>>??>????????????>>?6>==?@@@?@>@@>@@@@?@<<1??@@=@>??@@@@@?@@=@61=?A@AA@A:6?@A@A?AA@AA?A,=?==AB=B<*>@A=@>B=.?#### MC:Z:151M MD:Z:148C2 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FFFKKKKKKFKKFKKKKKKAA>?(?(>,=9,<9,<$3?(=/=?8+5&->><00(6>($,9,,,+,,>,(-,<1.1;,=;9:)-,)<,(6;,?9<=5=<@@0).--:/:6:A)%6%%:)%??@A).<-<7?########################## MC:Z:151M MD:Z:3G10T9C12A13T3A15G35T1A15T5C14 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:11 MQ:i:60 OQ:Z:A<,,,F,FKK6<7..88<8??=-=9??=<0=89@@?>6?>7?>?>>>?>>>??=>?>;46>;>=???>>>>>>>?><4>>>?>??>>>>>>>??>>???>>>?>?>??8>?@67A> MC:Z:151M MD:Z:147C3 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AAFFF<,F9::/?9ABBBA@AAA?A@A@A@;>/:3@AA?3@@@@??@?(???;@@?@@@?@??@@@@@=@?@?@?@>????==?>???>?>>???>>>??>>????>>?>??>??>>>???>>???>?>?>?>???>@??=@? MC:Z:6M1I144M MD:Z:41G105C3 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:F????=?>?>??>>>??>?????????>??>>??=4<>???>?>>????>?>???>?=????=>?>??>??>??@?@=9?@@?9<@@??@(<@@@@?@?@??@?@@?@@??@@>6>@>>=@@+7>@(0@;A@A@A??<### MC:Z:151M MD:Z:136T8C5 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:2 MQ:i:60 OQ:Z:AAAFFFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAFKKKKKKKKKKKKKKKKKKKFFKKKKFKKKFKKKKKKKKKKAAKKKKAFKKKKK,FKKKKKKKKKKKKKKKKKKKKKA<9;9@@>6?:*.9-.;=;9-3.)9>8>/)-@?)@?@@8)=AA@@>8=@?=7AA?@@?<@?@@@@@?>?@?>,@7<@@@@@;@>99:7=@>?@@=@?<8>=?@?>?>??>?>?>>=>?>::>>???=?>?=?>???????>?>>>>>94<# MC:Z:43M1I107M MD:Z:29A3G95T9C10G0 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:5 MQ:i:60 OQ:Z:?@?@@@>@?@@@@@?@?@???@>?@?>?>>???>>>??>>????>>?>?=?>>?>>?>??>>>?>?>??>>???>?>?>?>???>?>?>?>???@>;@?>>>>>>>??>>>>?>?>>?>????>>>>>>??>>>>>>>>>>>???>>>>??>?>?>>>?>>>??>@@?>>@????@?@????@??@??:??@???@??@?@??A@@@@@@@@@@@@A@@@?@@@AAB-;B8B@A@?@??@???>>>>>>?>>>>>?>>>?>>?>??>??>>>>>>>??>=???>>>?>?>??>>?>>>?>?>>??8<;9@?B@B?A@@>?AAAAAA@>?A@@AAAA@?@@>?@??@@?>?@?@@@>@?@@@@@?@?@@?@@?@@????>>@?>>>??>>:???>>?>?>?>>?>??>??>>=?>?>??>>???>?>?>?>???>?>?>?>??>??>??>@@?=>? MC:Z:46M1I104M MD:Z:132C18 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AKA@AAA>:@AA@3A>@7@@AA>@@@@AA?@@@5@>>?=@?>>?@>@>@?@@@@@?=???>;%:@@><@>?>>?>=>=?>>????>>?>6>?>>?>??>??>>>>>>>??>>???>?>?>?>???>?>?>?>??>??>??>?@@>=>? MC:Z:120M31S MD:Z:0G64A65C19 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:####KKFKFFF@@AAAAAABBBBBBB@@ABBAAB@A@BAABA@A@@AA@A@A@AA@?A@>AAAA?@?@@?@@?@@@?@??@@@???@@??@?@=??@?@?@??@???>??>>>?>?>??=>???>?>?>?>???>?>?>?>??>??>??>?@?>=>> MC:Z:151M MD:Z:131C19 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:7KFKAFFKFFKFKKKKKKKKFAKKKKKKFFFKKFKKKKKKKFFKKFKKKFFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HK35MCCXX160204:1:1122:14722:22704 147 3 17077142 60 151M = 17076907 -386 TAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTA ######=A3/)3ABAA=?./(9*8A8*(:9>(73>9A>:7=8?==7@?:759>:>;=1--=8>/><>8;>>?<>?>7-6??>6>>>>;??<7?;3=:>?>?>>?>>=?>?>>?37>>>?>>:=>;; MC:Z:9M1I141M MD:Z:126C24 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:######AA7,,7FKFFAA,,,7,7A<,,<7A,77A7KA<7A7KAA7KFA7)@9--(;;/'(,-7,7?>??:,9,;,7',#&-=)/,3-&-6-:<(,>,<(>><(>(989><>=<:2(/067(.,1;,= MC:Z:151M MD:Z:17A0A12A21A4T6 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:5 MQ:i:60 OQ:Z:########################################################################F,FA,,,AA,,,,,A,AKFKKA,<,A,7,,(,,F,7,7,,,<,????>>?>>>??>>>>>?>?>>>???>>>>??>?>???>?>?>??>??>>>?>?>????>???@???@?@3;???????@>@??@@?????@??>??@?A@@@@@A@AA?@?@;@?@@A@;??>;7A>??@???=>???>>7>??>?>??????;>?>?>?>???>?>?>??>@???@@@@@==@@@8=@>>?@@?@@@?:@@@>?@@?AAAA@>@=?>########## MC:Z:151M MD:Z:114C36 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKK>???>>>>?>?>>>>>===>>>???>>>?>5=;>;?>>>??>??>>>?>?>>??@>=;>@??@?:??@?=@?@??@@==@???<9=>A@:?=8@;>>-8.,2?8;=@@?BB?@..)2AA@A78>@8=?=:87# MC:Z:151M MD:Z:113C1A35 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKFKKFAA@@AAAAA@AAA@A@@A@@@?@?@@?>@?@@@@@?@?@@?@@?@@@?@??@@@???@@??@@??>>?>=>?>>?>??>??>>>?>?>??>>???>?>?>?>???>?>?>?>??>??>??>???>????????>??>?>?@@@==? MC:Z:151M MD:Z:113C37 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:1 MQ:i:60 OQ:Z:KKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HT23WCCXX160402:3:1223:24271:22968 147 3 17077163 60 151M = 17076858 -456 TCGAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCA ################?@.A/>=./BABBBBBABAAA?@B?AAA@A@@AAA@?=?>??<><=>?@?@>@??@?@@>@@?>=>?@??@??=@@?@?@?@????>?>?>?>??>??>??>???>????????;??>?>????>?>?> MC:Z:58M1I92M MD:Z:2A102C45 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:################AA,A,A<,,KAKKKKKKKKFKFAAFKKKFKKKKKKKFFFAFFAAAAFKKKKFKKKKKKFFKKKFFFKKKKKKKFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKFFFFAA UQ:i:44 AS:i:143 +HJYFJCCXX160204:4:1120:16741:34641 163 3 17077164 60 151M = 17077270 257 CAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAA =>=>=?>???>?>>????>?>>??>>=>??>?>?>??>=?>???>?>>???>>>>?>>????>?@???@??@?@@?@@?????@?@@??@@@?>?@?@?@@@?@?@?A=A?=?@>AA@AAA?AAAAAAABAABA@ABBBBAAA>0@?<7<< MC:Z:151M MD:Z:104C46 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKAKFBA@BB?.@?A=..8@@A@A?A@A=AA@@>8@AA@>;.AA=-=>:?@??:=@??@?@@@<>>:>@?@?>>?@@@?@>>?@@@@@@>?@>@@;@@@?>?>>>>??>??>???>????????????????>?????>??@?>>?< MC:Z:151M MD:Z:4G98C47 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:2 MQ:i:60 OQ:Z:#####KFFFKKAKKA,AAKA,,7FKKFKFFKKFKKKFFAFKKFAA,KKA,AFAFKKF?>?>@>???>?>???=?>?>??>??>???>?>>???>>???<=?>>????>@?@?@@?@@?@@?9@<>>?@@?@@@@???@?@?@@@?@?@.<@?A@A@@AA>A7=>9>@AAAAAAABAA@B@BBABAAA@@=?;A9AABBB9??>:7;# MC:Z:151M MD:Z:90C60 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKAFKFKKKKKKKKKKKKKKKKKKKAKAFFKKKKKKKKKFKKKKKKKKKFKK,AKFKKKKKKKAK7A<74??>?>?>>>?>>>??>??>>>?;?>>?>?>>>>?>=?>>>>>?>>>?>>?>?>>??>>>>>>>>>>>?>?>>>>>?>???>?>>>?>>>>@?????@@@><@??@?@@??@?@????@????@@@@@@AA@@@A*:;@A><;:8 MC:Z:151M MD:Z:89C61 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:A,?>>98???>?>?????>?>??>>?>???>?67?>?=?>>?:>>?>>?@?@@?@@>7>?>/@?BA*56A=:788 MC:Z:151M MD:Z:89C61 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAAF=>?@??>???>?>?>??>??>?>?>?>>???>>>>?>>?9<9<4?5>;?>>?>??>??>>>>>9=??>>???>>??=?>?@?>?>->?>?@(48?=@?@<98:==0<<<=??=??@@??8>@@20296>A@@>?;<:9# MC:Z:151M MD:Z:85C6A57A0 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKAFAF?@?@@?@@???@?@?@@??@@@??????>@??>?>?>?>??>??>??>???>????????=??>?>????>?>?>>??>???>>>????>??>>?>?>??>>=? MC:Z:93M1I57M MD:Z:82C68 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:A7KKKKKKKKKKKKKFKKKKKFKKKKKF@@A@@@AA?@A@A@A@@:?@?@???????@?????@>>;=???;??>???????>???>>???>>>?>?>>?>>?>>>?>?>>=>>>>>???>>>?>???>>>>>?>????>>>>>>??>>>?>>>?>>>>??>>>>>>>?@?<<= MC:Z:92M1I58M MD:Z:81C69 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:#FKKKKKKKKKKKFFFKKFKFF7KKFKKKKKKFFKKKKKKKFF><;>>??>=??>?>>?>???>>??>???>>?>9>?>>?=>>>>=?7=?>????>?>=>?>@??=?-(=>?=@?@=?@@@@@@?@@@>??@,8@@????AA@@AAA?A><.@;AAB######### MC:Z:151M MD:Z:79C71 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFAFKK,FFFFKKKKAKKKKKKKAKKKKKKKKKKKKKKFKKKFKKFKKFKAFKFKAFKKAKKKKKKKKKFKKKKFKAF,,FFKFKKKFKKKKKKKKKKKFFAFKFFKAKKFFKFKK,>?>???>??>??????>????>??>?>??>????>?>?>??>??>@@@?@@@@?@@?@@@@?@@@?@?@@@@@@@?@?@@?>??@@@@@@?@@@@@@@A@AAAAAAAAA@A@A@AAA@AAA@@AABABBBAABBABAABAB/6A>;97@ MC:Z:151M MD:Z:75C67C7 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKFKKFK,2;:@?>>:???>?=???;=??>299??>=>>==7:(=?>=8?:>6-?+2?>=???;>=>=,,=>)5=80(.:(=,?1=?9>;2@>:@7,+;>4<@1??;;(?@:<=>/9197:;37@@>-)=>?::@):@32268? MC:Z:151M MD:Z:71C79 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:A,>:;-6.&:7<5,8:;7<=:<@>8+>,8;;->??>><=9=:>><<=?<==;>5:>8?79>1&7>>???>>=?>?<:><>8,?>????><>?>9??>>=?>>>=?>:8>><>>3>?8>?>=<@>3>;;6> MC:Z:151M MD:Z:6T63C80 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAFA7A,<7A7F,A,,FAFF<<,<,(AAF<,A?=>>>?>?>>?>?>>>>?>>?>>>>>?=>>?>>?>?>>??>>>>>>>>>>>?>?>>>>>=>?????>?<<6>=A@@@@@@@3?AA@AB89A=86;#### MC:Z:151M MD:Z:69C81 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAF7FFKKFKKKKKKKFKFFKKKKFKKKKFFKKKKKKKKKKKKKKKKKKKAKKFFKFKKKKKK7FKKFKK@@@@@@A@@@@?@@@?@@@???@?@?@??@>??>???>>???>??>>???>???>?>???????>?>??>>?>>>=>>>=>>>>>>>>=>>>>>>>>>=>>>=>>>=>>>===>>>>=>>==>=>>=>>>>=>>>>>>9?@>>>;? MC:Z:151M MD:Z:68C82 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:1 MQ:i:60 OQ:Z:AKFKKKKFFFFKKKKFKKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HT23WCCXX160402:3:2108:25276:24814 99 3 17077201 60 151M = 17077598 548 AAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCT ??=>?@?>?>>???>>???>>??>????>?>?>??>??>??>>>?>?>??>????>?>?>?>???>?>?>?>????>??@?@@@?@@@@@@@@?@@?@?@@@@?@?@??@@?@@@??@@A@AAA>@@A@A@@A@AAAAB@BAA::4=@;><><;>@=@@@?@?@?@>@?58>=/(????>?>?>=.?>???>>>????9=>>>?>?>>?>??>????;?9>=@>><3?(@??=??>@???@>??@@7=@?<&@;2=6.(=?>>>?>???>>>??>??>>?>>?>????>?>>=>??>?>?;>>?>>?8??>>?>?>>?>>=>?>????:>>>>>>9>>>6>?@===? MC:Z:128M23S MD:Z:48T8C4T88 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:3 MQ:i:60 OQ:Z:KKKKF,7A,,,7(FKFKF7AF7F7F,KFFAKKFKKKKKFKKKK7FKKA,K<7AKKAKKKAA,,FKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFFKKKKKKFKKKKKKAKKKKKKKKFKKKFKKKKKKKKKKKKKKAFKKFKKFFFAA UQ:i:64 AS:i:136 +HK35NCCXX160204:2:1114:15331:14863 83 3 17077212 60 151M = 17076860 -503 TTATCCAATCTGGCCCTCCCTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAG =::/=3=8;@>?1?:7:6):.@?>@@?6,???>?8?@??>9@7=@?@?>=2<;>@;@?@?@?=?5?@@=2??>?;?=>??>>??><+?>?>;??>???;>>>>8>>?>?>>?;;?>??=?<=:8??>>3??>?>?<:?>8A? MC:Z:56M1I94M MD:Z:18A37C94 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:2 MQ:i:60 OQ:Z:A7A,F7A77FAF7FA<7<,A,KFAKKF<,FFKFF7KKFFFAK7FKKKKFA7AAFKAKKKKKFFF><?>?@?>>>????>>>?>???>>>>>?>????>>>>>>??>>>?>>>?>>>>??>>>>>>>=>>>>?>>>?>9>>>>>>?>>>>>>>>>>??>?=<> MC:Z:151M MD:Z:51C99 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:FAAKKKKKKKKKFAKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:1222:26839:60993 99 3 17077218 60 151M = 17077441 374 AATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCA >@=>@@>?>>?>>>?>>?>?>>??>>>>>?>>>>>?>?>>>>>?>???>?>?>?>>?>?>>??>???>?????>??>>?>?>>>>?>>>?>?????@@???@@?@?@/=????????@@<@@@?@@;??@@@@AA@A@A@A@A@AA><;:< MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK,FKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKAKKKKKK7 UQ:i:42 AS:i:146 +HT23WCCXX160402:3:2223:5244:67920 83 3 17077222 60 151M = 17077059 -314 TGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATA <997BAAB@AA@AA@@@A@A@?A@@AA@?@?@?@?@@@?@?@?@?@@?@@?@@?@@@?@@@@@@@???@>??????>?>?>>??>???>>>????>??>>?>>>>?>??>??????9???>>>??>?>?>???????>>>@?>=?? MC:Z:151M MD:Z:46C104 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:7FAAAKKA7?=AA>A<-8:67@=7=@@>=?:6-7?:=1956@<=:=6@@??=?@=?@@@=59<@=@@@>=-,??@@=??=>>(,.?>?<91>4????>??>=?95?>?:>?>?<8(?978(5.<>??>9.?5??????=12(2>>8??=?7<;> MC:Z:151M MD:Z:40C95A14 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:2 MQ:i:60 OQ:Z:#A@???>??>>??>?>??>????>?>?>?>???>?>?>?>?>>?>>??????>????????>?;>?>????>@>??>@??@@@??@@@?@@@@?@@?@??@?@@@@@@@@@:???;:8@ MC:Z:151M MD:Z:37C99A13 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKK,AFKKFFKKK,,AKKKKKKKFKKK UQ:i:53 AS:i:141 +HT23WCCXX160402:3:2122:17279:24532 147 3 17077231 60 151M = 17076963 -419 CTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCT 9;7;???AAA@AABABABBAABBA=B@>A@?>A..8@@@A@AA@AA@AA@AAA@AAAA@@@@?@@>@?@@==?@?@??@@?@@@<>?@@@@?@@??@?@>=?>??>??????9???>>>??>?>?>???????>>>???>?>????=>=<> MC:Z:151M MD:Z:37C113 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:A7KKAF@>=@@>>>>='>>>>>?>?>>>>>;?>><>>>>>?3>>>>.:$:<*'??>>?>?>>>>?>>>>>>>>>>?9>>7?/977?>>???>>>>?3<<@???@?87)::;=@4??>9@?39@;1@8@:@AA@A@=2A@@<3<+=:;< MC:Z:151M MD:Z:32C118 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKA,FFKKKKKKKKKKKFFKKKKKKKAKKKKKK7FKKK,<,7A,,FKKKKKKKKKKKKKKKKKKKKKKKKKAFKAK7AAAKKKKKKKKKKK7FFKKKKKKF<,AAFFF7FKFAFK7AFA7FAKAFKKKKKA7FKK77A,AFF< UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:2214:4970:43396 99 3 17077237 60 151M = 17077533 408 TTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGTGGGCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGT >@<@/?5<<:==>>>>?>=><>79;=6=;2<=2>?6<24006388.=7=>,75<=9?98>>=>>>*===/*><;><3?3>>?5;?9??@@9=0>?@@9?9@=:=0A?7A######## MC:Z:39S112M MD:Z:31C76G2T39 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:3 MQ:i:60 OQ:Z:A==?@?>??>????>???>?>???????>?>??>?>>??????>@??@@@@@?@@@@@@@@@?@@@?@@@?@@@??@@@?@@@@?5??@@?@@@A=AAAAAA4@@@;?AAA@A@A@A@AAA?AAABB@9?BABBA<<97> MC:Z:151M MD:Z:27C123 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK@=A=>=@?A@A@?;A@@@A@A@???????9<@??>?>@@@>=?>?@?@@@?>>????@@??>@???@??>???>>>>>>>>>>>>?>3)/&9>>>>>>?==>>>>>>>>?>>=>>>>>>?>>>>>>?>?>>?>>>??>?@@?=:< MC:Z:151M MD:Z:22C128 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:KKKKKKKAKAFFKKKKKKF@@BB@8@:>4:)>.8A@A>A@?A@A>>@>>?>@>@@@@@@@@?@>>@=?@@@?@?@??@@?@@@?>>?>?=<==;4>;0;=?>:>:?>>>>>??????=7>?=>??>>?=;?>?>?>???>@@>=;>?@??>>>?>???>?>>>?>>>>?=>=>????>???>?>??>??>?>>>>?>?>>>>>>>>??>>??>>>??>>:>:?>>?>>>:?>;?@>9>>?;=;?>????????@@?@?@@:@@?@???@?@A7A>?=@@@@@9?@A?=@?<:9# MC:Z:151M MD:Z:17C133 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKKKKFKKFKKKKKKKAFFKKKKKKKKKKKKKKKKKA@BABA@A@@A@A@A@AA@AA@AA@AA@?@?@@@@@@?@@?@?@@@@?@?@??@@?@@@???@@@???@>>@>?>>?>??>??????9???>>>??>?>?>?>?????>>>???>?>???>>?>??>?>?>???>???>?@>?==# MC:Z:151M MD:Z:17C132A0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:KKKKKKKKKKKFFAAFKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAA# UQ:i:44 AS:i:145 +HK35MCCXX160204:2:2107:15899:8605 147 3 17077252 60 151M = 17076777 -626 CTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAAGATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAG ?=8/>=9@=>98.9@9A@A:A@9?89@;;2;@?@=/:7-6--7-/)?<-?=@@??>7-??:-?<>>????>??>>::=,>????>>5????:??=><>?;;?>>;>4>>;8>>==>>>,>;58>==>>>>->>>=>>>=>>>>>>>??9?= MC:Z:139M1I11M MD:Z:16C28T105 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:KA7,F<7KA<<7,7A7FKAAKA<<<>=???>?>???>?>?>?;>?>?<;??7???>????????>?:=?>=???>@?@??>@??@@???@@?@@@@7@?<@??@?@@@?><@@?4?@@/4;><@A@A<8*9:8?A9?@0A/@A@@BAA:@6B>A-@A88@AA############ MC:Z:151M MD:Z:15C129T4T0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:A=A@1??@?@?@?@@@@@@@@?@@?@=@@<@?@??????>?=?>>>?>>?>??>>?>;>>?>>?>?>?=??:>>>>=>?>>>>>>>>?>???>>>???>?>>??>>?>?>>?>>>??>>???>??>=?==7= MC:Z:151M MD:Z:15C135 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:AA,FAFFFAAFF,,KAFKFKKFF7KKKKKFKKKKKKKKKKKKKKKAKKAKKKKKKKKKKKFKKKKKKKKKKKKKKFAKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFFAAA UQ:i:32 AS:i:146 +HT23WCCXX160402:3:1203:31406:51922 163 3 17077263 60 151M = 17077350 238 TAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTGTAGTAGTGTTTTTT >?>>???>?>>?>?>>??????>????>8>?=??>?>?5=?>?>?>>??>>?>=<>?@?@@@@?@??>????1@@@??@>@8&:=A+9A>8A@@:A*?77+?=AA(0)=+/9>=>4?9/>;98; MC:Z:151M MD:Z:5C130T0G7C5 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKKKKKKKKKKKFAFKFKKKKKK7FKKKKKKKKKKFFFFAFFKKKKKKKKKKFKKFK7KKKFFKFKF(AFAKKAAF?>??;>?>>>>?>>>>>???>???>?>(>>>?>?=>>>?>>>>>>>>>>??>>>?>>>>?>>>>>>>>>>>>>?>>>?>9>>><>>@>>>???>>>>@?>????>@?@???@??@?@??@??????@@A>@@A?@@@A@AA@@@=>=::? MC:Z:151M MD:Z:4C146 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFAKKKKKKKKKKKKKKKKKKKKFF,FKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKFKKKFKKAKKKAKKKKAKKKKKFKAKK< UQ:i:37 AS:i:146 +HJYFJCCXX160204:7:2201:8603:64316 163 3 17077267 60 151M = 17077505 389 ATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCA <@=>>>>?>?>>??;???>?????>??>>?>?>;>>?:>>?=>>>>>??>>>??>.1?=>;=:=?>?>?@?@@@=>@;???4<;@??@=??@?@=>@<6<<=@@?@>@@@@?::A@;@@:???+/?>65A?5>?0=;=;<6;>>?@@@>:9<@?;>>?-?>>;;68.<9<;&4?>0?;?>>>?=>7>>?47+>;8=>><>?=?>>9>9?>?>-;??>6?4268?>?>=:>??6>2??@@?;<> MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:A?@;?>>??????>????>???>??>?>??>?>?>?>>;?>???=>@@@>@@@@?@@?@??@?@@@?@@@@@:?=???@@@?@>@?@?@@@@@?@@@-=??@AAA@A@@A?>>@A@>@>?@AA@AA?<@@?9@@A=>@;<95 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKAKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKAKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKK,AFFKKKKKKFKFFAAFKKAFFFFKFKKKFFFAF7AFKAAAFKKA>@@A@AAA@AAAAAA@@?@@?@?@@@@?@????@@?@@@???@??@?@@?>?>?>>?>>?>?>????:>>>>>>?>>>>>>>>?????>>>???>?>>??>=?>?>>?>>>??>>???>??>?>>?>??>>???????>??>=9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:7KKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFAAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:7:2111:25733:48318 83 3 17077275 60 151M = 17077154 -272 AGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATG #999??A=A@=7?A?@?9>?;;==?A@@@>=7?>8??<=@?=;?@@@@?@@@8@@;@??>>>>7>?>?>???????:>>??:<*>???>>?>??>?>?<6?6>==?>??>?>??>??????>??>=8??;?>>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:#FK7KKKAKKA7>AAAA@6-.2A??@@@@????@@@?@@??@?=@>@>@@?@@@@@@;@@?>>>???@????????=?>>>=????>??9->?>??>>??>???;<>>>??>??>?>??>?????????>????:????>>????@?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:KKKFKFKKKFA,AAKKKKF<,,7KFFKKKKKKKFKKKKKKKKKKFKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKFKKKKFKKA,KKKKKKFKKKKKKFAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1106:2250:44872 163 3 17077286 60 151M = 17077610 475 AAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCGTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTT >?=6?@??>??>?>????>?>?>>?<)>??=>?>=>=%.=>??>?>3>>?=>@@@@@@:???9=;?961>>?>?292&/'1&;.--+-;(??=A>@2;-.8@:>/->>>################################## MC:Z:151M MD:Z:37C113 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAF=>>?@>??>>>????>?>?>>??>???>>???>==??>??>?>>?>?????@@@@:?????@@@>@?@?@?@@@@@?@@@@?=@?@@@?@@?AA@?@A@AAA@AAA?AA@AA?A@9@@B@B@@@BA>AA9@@3>;9>A@;?A@B?>:7@??>???:>>>?>>;=>>>>>>??>>>??>=>?>>>>>>>>>>9=>??=>5=76=>>>>???@:@?07=?@@>????@@?@?@@@??@?@@?@?@???>?<@@???<@;@A?@@?)75@@>=@@@A:=?=A887>@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKFKAKKKFKKAFKFKKKKKKKKKKKKFKKKKKKKKFKKKAFKKKFKAABA>>;@.AB@>.A9A?@ABBABAAAB@>@:<@A@=AAAAAA;AAA@@@AA@@?@?@@@@@@>@>@@@??@??@?@?=?@@@?@@@>??>??>?>??>????????>>????9??>?>>???>?>???>??>@>>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:=>?@>?=<>>??>???>>??=>????>??>?=>?=+==??=>??9<>>>=??:>?>?>?>???:?>?????>@>?>;=?>>>@?@>@;<@@?@@@?@>:6:?>:?@>.=;>-9>?:?@@:>7?@AA>/-+@<8A1B@AA###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKAFKKKKKKKKKKKKFKKKKKKKKKKFKKA,FFKKFKKKKFKKKFKKAKKKKKKKKKKFKKKKKKKKKFKF7FKAFAKKKFKAAKKKKKKKKF<7AKFAAKF7A7A,>>>>>>???>>>>=>>??<>??>?>>>>>>??>>??>.:>>:>??>>>>>???>@??@:<@>,:<<<(:>;@@>=8<>:<=>??-=@7<<:7?9-(7,(-:;@;>,,,>?/97-%/<>;?99=?=?==>=>;)-===???=?47==?>>>=<:7>?>???>??=?=:8<:>==<>==>=<2>>>=<=999>=>>=>=>>=>8><<=>=8=<;98389:>==>>>=>=9<>=>>><>>><>>;?>=?< MC:Z:151M MD:Z:12A138 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:########FA<,,7?=>>???>???>>???>????>??>?>:?>>????????9>>>;>???>?>@?@?@@@@@?@@@?@?@?@@@?@@?@@?@?@?@@@?=@?@AA=8@A@AAAA@@AA@::@AABA;??@AB@B@@@BBABB9B@8@BA=:94# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAK?>??@.6=8=?=<84?43=?>?>=;>2=8=(1-=?*800;=8??=?;=>:'5;==?>???(<,>7=8?>=?(?8>?@=?@@@=??-;:=?@889;<@?@@@@@@@;?2;,(989/:172;<@?@3=AA;AA@AA8AA@@AAAAA?=.:9> MC:Z:151M MD:Z:61A53A35 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFK,AFAFFFFA>?>>>>?>>>>>>>>>>>>>?>>>?>9>>><>>?>>>>>>>>>>?>>>>>>??>?>>>?>>?>;>>?=>><>>>>??>>?>>?>@?@@?>>?>>>>@???@@?:???????@@???@???@@?@A@A@@@A@@@A@A@?=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFK?3;>(??(=6>688>;>,4;>(/8=?/-9?7>01,9'=.?=>??@17>93@?.8>@@@>7(7?4899;=;+-)%-,1);>?685-,5<)0/---:788>',:4####################################### MC:Z:151M MD:Z:13C42C19G0T3T26A5T31A4 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:8 MQ:i:60 OQ:Z:AAAAF=@BA@2BA:9+.>.A+.A8=*7>+2A;@@@>=;<@?@?@?@@>>?>@?:=:---6>?@>;9=?@@>@>?=?@?>???>?>>??>?>??>??=?????>==-0>9?;=?>>???>?>:??>??>??>???>?????1=>?<@?=>?? MC:Z:114M1I36M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:#AAFFAFKFA7KF7<,,A,A,,F?@?>>???>??>?=>?>?????;??;7><<;=???>?>?8?>?????>???=?>?>???>??>;=>==?=@:>>?>>?@@;9*.>?@@?@@@=>9@@=>>>=?:@@??A@@@@@A@=@.?-AB:?>=;8=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AA9=@@6==?>>??>=>>?>?>?==8???9>>>>>???>?>?>?>??@?@@@?4??@@?@>@,9@),?>>?;@=@@>@?6==@@?;?@A?@?A=?@A,0.9=@<@@A>B.->-.=4.*=?9:7> MC:Z:151M MD:Z:143G7 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:AAAFFKAFFFFKKKKAKKKKKKKAFAKKKKKKKKKKKKKKKKKKKKAKFAKKKKAFKKKKKKK?*8A@A@A@A@>=1>=>*8+6;6<-@?@?>??;=?@?@?=@@??<>;>:?@@?=>@@?@>>@@?@@;=*5??9>>=?<=*=>>?>=??>=>:=<=???>?????>?>????>??@??=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:A<,F,<=>5;;=><08>=>>>=>>>=>4>78==91=>>>>>>>>=>>>>>=>>>>>,>>>8==8=,?99>>=,,>=,>9;<<>???>>>43??58>>>>>-)478?################################### MC:Z:63S88M MD:Z:135A10T4 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:2 MQ:i:60 OQ:Z:AFFF<>?@?>?>>?>?=???;>??9>>>;9=??>?>?>?>?>?=?3?=/>==?>???>??>??>>>?>?=?>???>?;4:>;=77=?@@@@>@@=???@@>:@?>@?;0=><@?@@@4<>=@@>A@4@A>AAA@8@@>9?A>?AAB@?##### MC:Z:151M MD:Z:146C4 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKFKKKAFKKKKKKA@?4=+0:@A@;?@B>@A@B?A?AAA?=AA9A@@@A@@@A@AA:?@A@@@?@<7,>(@?@@@?@@?@@?@?@@?@?@@@@@@??@@@=:??>?>>???>?>???>??>??>???>?????>?>????>?????>>?==<<> MC:Z:151M MD:Z:16T47G1T84 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:KKFAAFKKFAAA<7A,,?@>?>>?>?????????9>>>:9=??=?>?>?>?????>>????>?>???>?:>??>?<;>???>???>?@>?@>@;>@?@@@@@@@@??@@@@:@@?@??@@@?@?@>@?@@?>9=@AA@AAA@A@A@A@?@?BB?AAA@?>;9## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKK<@ABA@A@A@AAAAAAA@@:?6=@A=A??@@@?@@?@?@?@@@?@@@?@@???@?5@@@@@>@@@?@@?=;=@>6??@@@??>>??>??>??8???>????>>??????>??>??>>>>>>?@??>>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:##A,AFFFFKFKKKFKKKKKFAKKKKKKKKKKKKKKKKKAF7AFKAKFFKKKKKKKKFKKKKKKKKKKKKKFAKAKKFAKKKKKFKKKKKKFFKFKF7KKKKKKKKFKKKKKKKK@@AA@@7A?AA@@?@@@?@??>?>??@@>@?>?>??>?????????>????:????>>???>?>???>??>??>???>????????????>?????>>>>>>?@@?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:0 MQ:i:60 OQ:Z:FFKKKKFKKKF7KFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK35MCCXX160204:7:2218:3640:17430 83 3 17077328 60 151M = 17077078 -401 ACATCATGCCTGCAGCGGGGGCCTGTGTGTGGCAGCACTCAAATATGATCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATT ######AA@?>6)?AAA<=<@<=25)/40?97>@@<;,<1-??@>0@;;>@?@@@6@>6?8<.?>6:????:?=??;>?;=><>?>?>?;;8,:=9:-=??????>??????>>>>>>?@==?>?> MC:Z:151M MD:Z:20T17C8C103 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:3 MQ:i:60 OQ:Z:######KKKFA<,AKKKK<7,FKKFAFKFA7<,,<7FA7FKKAA,A7,KKKF7KFAFKKKKKAKF7KAF7KF<7FFFAKKFKKKKKKKKKKKKKFKKFKKAAKAKKFKKKAAA,FF<<,FKKKKKKFKAKKKKKKKKFKKKKKKKAAFFAA UQ:i:44 AS:i:136 +HJYFJCCXX160204:5:2213:10165:20436 147 3 17077331 60 151M = 17077236 -246 TCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGC >:;;8:16<:@?=@=@A@@>4?>:<>???>??>@??@?=????@?<0:;@:<>?>=???>>>>?;9>>>>>>>>?>?>=??>??>>>>???>?????>?>??>>>?????>>>>>>??>?>???>:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:FAAKFKFA7,,,(<(7A7,,,,FFKF?=/=?0'??????;<8<27=;35*->>>===?;%===6>??>==???>;.=72=?<;;;<00:,;=>>@??;>; MC:Z:111M40S MD:Z:7A7C0C15C10C0C16C82 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:######################################################F>9&8=>>>>=>>,;:;5$.&+:56?=>,>;9>>?>>?>>7--6>3*;,,9-=0,0(7/>=?>;-(7>>;>;=-17=->-<7=@=?;:8?###################################################### MC:Z:151M MD:Z:63T8T33T0C0T4T14C0C8T0T3T7 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:11 MQ:i:60 OQ:Z:AAAFFFFKFF,?=07?3=<=.$)'<..@@@=:='=7>??@@??=0>>4/>9>9:>@:@@???>@@?6@?8=@>6)=?>=7?7:(??>>?;4>???>=4>>>7>??>??>??>?9;?>>>=>?=<< MC:Z:151M MD:Z:3G39T1T50T54 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:4 MQ:i:60 OQ:Z:################AA7A,,,<,77FKKAKFF<7A+?B?0:1*&))9149/3:+.4.@.A>=??@?@@?@<@>@@@;;;=?@@?@?<05@??@>=@=?=?==>>?;7??=?>>=:/:?>=>=>0>.=6>=<><)9?>=-<->;<6<=>>>.166<><4>;>=:>???9>;8=>>>>@=>? MC:Z:151M MD:Z:14T1G134 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:#A,?@??>?>?>?>?????>?????>?>???>??>??>?>?>>??>???>??>??>?>??>????????>>??@?9@?????@@@?@?@@@?@@?@@?@@@?@@@@@?@?@@???@@@AA@AAAAAAA@AA@AAAA;AB?ABAAA?<99> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKAKKKKK< UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1203:31406:51922 83 3 17077350 60 151M = 17077263 -238 CTGTGTGTGGCAGCGCCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGAAGATGTGGTAG 5:9==A>@,;==@-)983@@>A>?@@@?=@?A?@?@?@@@?=@@?@@?@??@?@@?@@@@@@@@??@@@@9@>>?>????>?>???>??>??>???>????>>?>??>?>?????>>>>>>??>??>????9>??>??>??>>?>@?=>@? MC:Z:151M MD:Z:14A136 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:7FKKFAA<,?@>?>?????>?????>?>=??>??>>?==>?>?=?;?>>>??;=?==;??=????????>>????9??=@>>@?==@?@@@?@@?@@??@>?@@@>??@>9?27-7;;;;?5@@>>;-???@=@@4:@A@@@?B:80AB9>9<### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKFKKKKKKFKFAKKKKFKFKFKKKKAFKFFAKKFKKKKKKKKKKKKKKKKKFKKKKFFFKKKKKKKKKKKKFKFKKKKFFKKF8:@>>@??>?>???:??>??>???>???>?>?>>??>>?????=>>>>>??>??>????9>??>??>??>>?>?@>?>>@????>>6?>?=?>???>??>??>?>?=??=>???>??======??>??>=6??>>=?<;27?9<2=>?@>>@>@?@?@>?@@?@@@?@@@@@?@?@@??8>@@<;?@@:8=@8?@A@A>@)+8->/9?@A@(2?##### MC:Z:151M MD:Z:137A13 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKFA@?@@???@???@@??@@???@?@??@?@?>>>???@@@??>??>9>>>>>>>>?>?=???>??>>>>???>?????>?>??>>>?????>>>>>>??>?>>??>>9>??>>>>>?>>>>>>>??>>???>@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:@??????>?>???>??>??>?>?>???>???>??=??>?3??>????????>>????9??>?>>???>?>@????@>@@?@@@?@@@@@??>@@??>@@@@@?@@@@@@?;@@>@?AA6@?A@A@@A@A@@@A@ABBAB?@?@<89> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKK<>??>?>>>?>>?>?>>?>>>>>>>>??>>?<;>>?;??<>>?>>>>?>>>??>9>>>>>>>??>>>?>>>??>>?>?=>>?>>>?>?>????>=????????>?@@?@@?????:?>@????AA@@???@AAA@@@@A??<:;A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKFFFFFKAKKKFKFK9.BAA?7>A>B@A>AABBBABB@?BA@AA@A@A;@AAAAAAAA@@AAA@:?@?@??@@@?@?@@@>@@?@@?@@@>@@@>@?@?@@@@??=???>><>>>??>??>????9>;?>?=>??>>?>??>??>??>????>=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:#A<,7?>>>?>>?>?>>?>>>>>>>>??>>?>>>>?=??>>>?>>>>?>>>??>9>>>>>>>??>>>?=>>?@??@?@???@???@?@?@@????????????@@AA@;@?@@@>;?AA@@:>@?@A@?8@;A@?AA?AA??><8<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKK?>???>??>??>?>?78??>???>79=??==>??>???????>>>????9??>?>>???>?>???>??>??>???>?@>@6?@?@??@@9@:?@@?@??@><>>7>@5>A@@@@@A@A@@?<;:: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKK9@@9/>;B?AB@BA@BA?8>@A9A@AA@?AA=8<8?AAAA>2@:-9A@@@@@==)-<>@?9?(;/<@@>@:@?@>-@???@>=@?@?@@?>?>??>>=>>=?>>???63<==>???>>>???>>?8??>??>??>=>>:@> MC:Z:151M MD:Z:50G0G99 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:#AAAAA7A9=>@>>>>=>=>=>>>>=>>=>=>>>>>=>>>>>>>>>=>>>>>=>>>>>=;>>>>>>=>>=>>>>>>=>>>??=?>?????>?????>?????>?>??>???????>??>>>????????>@@@@?@@?@@@@@@@?@@?@@@>=<99? MC:Z:151M MD:Z:75T75 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK UQ:i:42 AS:i:146 +HT23WCCXX160402:3:2211:6045:68324 147 4 57194287 60 151M = 57194115 -323 CCACCCACACACCATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATAT 8:1:==9BABAA>>//7=<@=>8A98@=AA:?)A@@@@@AAAA?@<@A=?@AAA@A@@@?@@?@>@?>@@<@@@?<.??'.=@@@??@<@@?8@=@?=??>>>?>:???=>?>?>???>>>=;?=??=??>??>??>?>????>>?>>>>> MC:Z:151M MD:Z:42G108 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:>>>?><>>?>?>>>>=?>?>>3=>>>?>>?>>>>>>>>59.<==>>9>>>>??==>>>???>>7=6?><=????@<>?>????;05@>88=>??>??0;??@8?<=@=,>;:A@@@A)9:)-?/A@::?@:.B3.>>>5># MC:Z:151M MD:Z:39G111 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKFKAKKKKKKKKKFKKFKK7FKKKKKKKKKKKKFFF>>>>>>>>?>?>>>>>?>?>>>>>>>?>7?>>>>>??>>>>>>>>>>>>>>??>>>>>>:>>>>>?@?>>??>?@@@?????@?@????=8>,>),(;3><:8@)?@@<@;2@@@)A########################### MC:Z:151M MD:Z:138A5A6 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:2 MQ:i:60 OQ:Z:?87>;??>?;>9==+;<>?>?????2??>?609;:,=7,,,,,68:,,0?+,(0:..6;>>,,??::(.))7?7;6<<,:+&/9=,<).:??<>>>99@?'?:--=@>))@->3/89.).,..*8>4@AA=)@########### MC:Z:151M MD:Z:37G69A25G12C4 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:4 MQ:i:60 OQ:Z:<,AFFKKK<9>>=>>=>=>>>><=?7>>>>>><=8?>>>>>>><>=;>>>>>><>>=>>>,1>=>;>>>>>=9>>9>6=??>?>?>??<>?>??>?<>>:??9?)4=>><(;????>>@59:@57;:?6?7>?@@#################### MC:Z:151M MD:Z:34G21G76A0G3C11A0 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:6 MQ:i:60 OQ:Z:AAFFFKKFFKKKKKKFKKAKF??>?>???>?>?????????>??????>????>>??>???>@?>????@@?@@@@@@@?@@@@??=@@@@?@@@>@A@=A@A>A?@AA=@?@=AA2<7??@B@AAB@ABBBAB=?A?<;9< MC:Z:151M MD:Z:32G118 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFKKKKFFKKKKKKKKKKKKKKKFFKFAKKK?.=AA@AAAAA>;.8@:?>@A@??<>'?>?>@?<@??>>8<<.9-@@64=.<+6896?'=?>>8??<8>>>><>==1==?>=?=:;>><=??>?>=<>?>>>>>>>>?9?>;?> MC:Z:151M MD:Z:23G27A31A55 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:##################################A7AA,??>??????>>?>>??>??>>?>?>>;>=?>?<===>>??=>?@5??@@@9=>:;?@>?>>>;<>?@??@@?5>@?*-9==?==@@@?@@?/:9?6@@/)>@<=>=;==A>8>@A@??;?:?9><6=6 MC:Z:151M MD:Z:22G128 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKFKKKFKKKKKAFFKKKFFKKFAFFFKKKKAKKK7KKKKK??=5=?????5<;>?>>>;>>????;???????>???>???>?==>>>>=>>>=><>>==>>>=>>>>>=>>>>>=>=>>>>=>=>>>>=>>>>>>>>>>>>>>=>>>>=>?> MC:Z:151M MD:Z:4T146 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:AAFA,F<7KFKFFFF?>;=@>>>>>??>>>>>>>>>>>>>>??>>>>>?>?>>>>>?>>>>>>>???>>>>>?>?>??>>>>?>>>>?>>>>?>>>>>?>>??>>?@@>>?>@@??????@@@??????@??@@@?@@@@@@@@AA@A@@@@@@@@@A@??<:;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:8:1212:27082:43730 99 4 57194321 60 147M4S = 57194324 147 CAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTAGAT =>><>????>=??>>>>?????>>>?>??>>?>>???>???>???>>>>>???>>>?>?>?>>89>>>>>>:>;>?>>>???>>?@??>@@??@=>@>87??>@@@???=??@??@@;@@@@@@@@?<=@A@@@>@;@>>A??;<*=: MC:Z:7S144M MD:Z:8G130A7 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKA?>=>@>??>>??>?>>>?????====?9>?>?>?>?>???>???>>>>>>:????@@@=??<@??@?@>@>*;:;*.-5/>>>9>9<@@@?@7<@<###################################################### MC:Z:151M MD:Z:78A62T9 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKFKKKKKKKKKFFKKKKKAFFFKAKKFKKKFKKKKKKKKKFFKFFF97;?AA@:.=>=>?@?>@?@?>@>?>???>>>???>??>??>??>??>?>???>>>>?>?>>??????????????>?>?>>>?>?>?>>?@?>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FFAFKKAA<,A=B?>@@A.8A@A@AAAA=@@@?A<;7;=?,/2?2@??:=?=@=<:@@?>@>@?@@@?=>@@@?@@=@??@=???>?=?>:?>>>=>?=?6=9>==>>>>>>>>=9>?>?>1?@>/=?> MC:Z:151M MD:Z:7G130A12 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AA7(?)?>8=A?8-7@A=<6;.8?;==:-@??>7?@@@??>@@@>@?@@????@>?8>10???@>92-@@??<7>=/@@;?>?@@>>>>>>>??7>>>>>?>>????????><.>>?>?>>><<)>;?=?;;< MC:Z:147M4S MD:Z:5G8T1T53T16T48A7 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:6 MQ:i:60 OQ:Z:#######KFAKFFA,<@=>>?>??>?>>??????>>?>??>???>???>???>????>>?????>?>@@@?@?@@?@@?@>@??@@???@?@?@@@??@@@@?@@?@@@AA@A@@A@AA@@@@@A@A@@AABBBABABB@BBB?BABAB8BA@@BABB+;//7788 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKFKKK@>3@@;AA@A@AA@AA?AA97:?:?@@??>@@@??<@@@?>=>@@@>@?@@>??@@@@??@@@@?@@@??@??>>=?;-?>>=?>?;???>?>????>?>??>>>??????????????=?>?>>>???>?>>?>>??@@?@;?> MC:Z:45S106M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:KKKFAAFA7KF=?????>>>?>??>>?>>???>6?>>???>>>>>???>>>?@@???@@?;=<=>??<@>?>?@???@@=?:4?@@2@@?7@?@???0:5<=?-5?????>??A-::@6->@.3/.<.=:?=>A8?.=BA9;;??.130*08<:: MC:Z:151M MD:Z:99G15A2G11A20 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:4 MQ:i:60 OQ:Z:A,AFAFKFKKKKKKKKKKKKKKKKKKKKF0(*/>*87A98<*@<.@=.=<@@>6=>?<=,?>>:9=@@?;99.<)=?:46.*0',>&.;>?>????>>>=:=>>?5?;:?<=8????@>>=<. MC:Z:148M3S MD:Z:5G8A37C37A36 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:################################AAF<,,,,<,77F<<<,A<,FA,>?>??>???>???=:?=>>==2:>??>??>?=>??>>>>?>??>?95>>?**65;>=>?=>=>@??@>@??@@?@.->)>>=?@15>?3>=:>==7<>@@@@@=???@@A@>2<@$6=5B@:<*?A84@@:A@A9=;1=9 MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFA>=>>@?>>?>??>???>???>???>????>>?????>?>???>>>??>??>@?@??@@?4<;=@>@@@??@@@@?@@?@@?@@>;67??>.7*9A7@AAA?9A@A>>A?B?/@7@######################## MC:Z:151M MD:Z:129C10G6 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKK>=>?<>>??>???>???>???>????>>?????>?>???>?>??>??>?>???@@???@?@?@@???@@@@>@@=@@?@@?@??@?@>@6>?@@>@>@@@AAAAA@AA@AAA?A@BABB:?BAB@@A@A98@BBAABAB?BB9==<97## MC:Z:151M MD:Z:120A30 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKAK>=>>@>??>???>???>???>????>>?????>?>???>?>??>??>?>?>?@@??>@?@?@@@>?@@@@?@@?@@?@@<>??@>?@@>?=>A@A@@@AAAAAA@A=@A>@@.(A?9?:ABABAB@4AAAB:A794AAABBA@####### MC:Z:151M MD:Z:119A31 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKFFKKKFFKKFFAAKKKKKFKKKKKFAFAFK-@:7<);-=AAA@A@@???=:=:6?>?@@@?@?=:??@>@=@??@@@@?@>@?@@@>??@@@>??>??>??>?>????>>>=>?>>??<6.????>?>==><9>?>?>>??>==>???>?>?>??>????>???>=<= MC:Z:151M MD:Z:116A34 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:7KK@A?@??@@@???@@@@=;@@@>9@???>>?????>>????>???>????>>???>??>??>????>>?=>>>>=>=>>>>=>>>>>>>>>>>>>>=>=>===>>>=>==>>=>>>>>>=>=>=>>>>>>>=>>=?????=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:<<8:=>9ABB@?B@A@@@AA@@8@=AAA@A@AA??<>@?@??@@@@?@?@?@@@???@@@?@@?@@?@@?@??????@?>>>?>?>>??>?????9?????>?>?>>>8>?>?>>??>?>????>?>?>??>????>?>>?>??????>=>? MC:Z:151M MD:Z:108A42 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:FKKKF7KKA????>>>>>>>???>>>>>?>?>??>>>>?>>>>?>>>>?>>>>>?>>;?>>>??>>?>??>>>>>>??>>>>???@??@@@?@@@@@@??@@?@?????????A@@A@@@?@@@A@@@A?AA@@?@AAA@AAAABB@ABA@??*<:: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKA>.A=@@AAAA@?@@??@?@;@??@@@>?@?@?@@@???@@@?@@?@@?@@?@@?@>????>>>?>?>>??????????????>?>=>>>:>?>?>>??>?>????>?>?>??>????>?>>?>????>?>?>@@??>=@@?>>=>>>>>=>>>>>=>=>>=>>>>>>>=>>===>>>>>>>>=>>>>=>>=>>>>>>>=>>=>>>==<>????>??????????????>?>?>??:??>?>???>????????>????@@@??@@@?@?@6@??@?@@@??=;:9> MC:Z:151M MD:Z:100A50 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKK7FKKKKFKFKKFKKKK UQ:i:42 AS:i:146 +HK3T5CCXX160204:7:2118:1803:38438 83 4 57194364 60 10S141M = 57194046 -459 CTAATCTTTGTTGTCCAAAACCGTTGCTCTCCCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCGAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTC ###############################>8::,:/.9.189;97?:=@@>?=;>:9+,=..,:<.8;7>;<>3(,>?>6987(??=+9;????8?>?>86=4??<<=<>??>??????>?>?>>??>?=?>??>=7=8=?>?>?;==> MC:Z:107M44S MD:Z:11A0T2A4A54T65 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:5 MQ:i:60 OQ:Z:###############################FA<<,<7,A,7AAA<7KBABAB@>A=9A>A@A?@BBB@A@@A@AAA@@?AAA@@@@A@@AA@AA?@?@@@@???@?@??@@?@@@@@@@@@?@?@?@???@?@?@>>??>?>????>?>?>??>????>?>>?>????>?>?>?>?????>?=>==> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AKKFFKAF<<;??@><>??>??????>>??>>>???>????>???:>??>??>@??=,68>:@@?@@@@=<>@@?@@>@@=@@=?@?@?@@8???@?@@>?A?A>AA??@A@A@9=)7(.8>@?@@152?.'??8<@<>8/94&/.:@4.;>:6=# MC:Z:151M MD:Z:86A34A29 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:2 MQ:i:60 OQ:Z:AA?=>>@>?>??>??>?>?>>??>>>?>?>???>>????>??>??>??>?>>??@@@????@?@???@@@@@@@?@@@@@?@?@?@@:?@?@?@AA??>A?>A;78# MC:Z:151M MD:Z:86A64 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFAFKF=->3B@8.B::*/6A@=:@<@@@@:?9=@@@>89<@@;:>@:88??;;,6>??@@=5;@@@=?@?@?@??????>??>?>????>;846,94??>??;;=>7>??;>= MC:Z:151M MD:Z:83A64C2 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:2 MQ:i:60 OQ:Z:7796-.@>A>@?<:.+;2+>>9@?>?@@@@>:;:<@?>:?>@@>=-=?@:=?>>=5.><7:>+6:>==<<>:???>?>?>??>?>??>?>>?>=<>?>?>?>?>?3?===>>?==??>??>>@???>22@@AA>>:>?=?>>??>>>7???>?>?>???>???>??>?>????>?>???>?????>>>??>=?>??>>@@@<>>> MC:Z:151M MD:Z:82A64C3 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:2 MQ:i:60 OQ:Z:#AF7KKFAKF<,>>>?>>>>?>>>>>?>>>?>>:>?>>?>??>>>=>>???>>=<>>?>>??=<:>????>>??>?6>>>=9>>=0<>?>>>???)>.<<<8;<(5?@?????;):?@???8(<>???'9(>.&<..9>@>?########### MC:Z:78S73M MD:Z:76A18G30C6G7C9 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKKKKKKKKFAKKKKKKKKKKFKKKKKKFAFKKKKKKKFF7FKKKKKKKKKKFKKKKKFKF,FFKKKKKKKKKK,F,AFA7FF,AKKKKKKKA,AFKKKF7,7FKKK,A,A,,7,,????>>?7>>>?>?>????>????>??>??>????>>?>??1?>??@@@@?@@@@?@@@@4=@@@>@?@?@@;?7?@?@?1?@@8@=)-)?@:,:-,755>'/7?@A=?:@==@-.;=@><<################## MC:Z:151M MD:Z:75A28A35C4T5 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:4 MQ:i:60 OQ:Z:AAFFFFKKKKAKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKK7KKKKKKKKKKKKKFKKKK=>>???>>??>>>?>?>???>>????>?>>??>?>>?>>?>???>>>>?>???@@@@@@@@@@@?@@?@?@?@@:?@?@?@@@?@?@@@@?@@?;@A@AA@@@A@@A@AAA@@A@A@BABB?@B?@@BBABB?@BB50>A?@BB88<84> MC:Z:151M MD:Z:75A64C10 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFA=>B>A@@BBAAA@BB5;@@@@A@@@@AAAA?A@??@@>@>@@>@?@???@@=@@@@?@??>>????>?>?>?>?????>>>??=??>??>>?>>????>???>?>?>@=?>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:>>???>>???=>>?>??>??>?>7=>???>>>>?7?1=>?=??????????=>?>?>???>9=?>??@>?>+=?@?@?@9??-<@9=?@=>@?@@@?>@?@=7>@7;=@?@@@>@A=<@AA@A@@AAA>?AB>?BA4@40::=7 MC:Z:7S144M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:A988;84,7+,<;-9<@=@<>@>?==;?=@@=;=?2??>?>=>-=??>82.>?9;;>??????=9?;????>???==;>==;>??>??>>???>????@>>?> MC:Z:133M18S MD:Z:5G10C3A1T3G10C26A64C9 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:8 MQ:i:60 OQ:Z:######################################AKFA<<;@37-@??<2-:4>>?:@?:???><>;>0=@>?@@@>>9?>>?>>>7=6=6?>???=?=9>?=6=?>?>>??5?>???>>=??> MC:Z:151M MD:Z:25T8G112 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:###################################################AFF?>>>????>>????>??>??>??>?>>?;>??>>=?>>??????????@@?@?@?@?=@:??=>>@?@?@?<@@@?@?@?@?=?>A>?AA@@?@@@<;AA@AA@@5?A>A@?@>:+:>@?B>*9@=@AB@BA>/=7=:67: MC:Z:151M MD:Z:63A64C22 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKK#9>>@??>>????>??>??;>>>?>>?>???>>>>9>?>>??-=??????????>?6>>??:>?2?6???>>765?=?@>@==7<>84=<,<5>?@>=?>@;?,,(=8==-6<=@6.:6:9>=3?-6>;)477@;;@@############ MC:Z:5S146M MD:Z:1A60A64C2A20 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:4 MQ:i:60 OQ:Z:A#AFFKKKKKKKKKKKKKKKAFFKKKKKKKKKKKKKAKKKKKK7FKKKKKKKKKKKKAFKKKKKK7FAKKKKF7<>@>>>???>??>>?>??>?>>>=>??><>>>>?>>???????????>??>?>>>>>?>=<:<;@=?@?@@?@?@?=?@@?=@?)>@?????@>=?@??@@?@@;A=@.6?A@A??AA@@?@;05# MC:Z:151M MD:Z:111C38T0 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFF7FFKFKKKKKKKKKKFKKKKFKK,FKKKKKKKFFKKKKFKKKKAKAK,AFKKKFFKKKKF@>>?8=>;,=>882><><<,9-<'8-<>?<.8,>?=?=+(=,1>?@@>><=><?;@='>@?@4)9@)59?&6)>-7A?=?AAA8?2A-?)>8?8B?@??>?>>?>????>?>?>?>???=?>>>??>>?>??>>?>>????>???>?>?>?>???>>>>?:?>?????=>6->>>>>?>>?;==?>==>=>=>>????????7=<<><>>;>><>=<>??>?>????87<@==@??????@?>=:??@???????<@@?@8745>@;@?@AA@;?@;@??>0/009/,>/@;000)(==A4B:AB####### MC:Z:151M MD:Z:147C3 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAA??>?>;=>???=>6=?>?>=????<;>:?????8:>2>;<@>7@==(<>@?@?@@@@?@?@6>@?@>??????@?>@@??@?@?-6=905=-<.-<4>9@AAA2@<)A@>A-<->?>?9?<8??A:???9(0)04@.+9>9> MC:Z:151M MD:Z:100C1C48 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKAFKKKKFF7FKFKKFFKKKAAFAKKKKKAAA@A@@@@>;@@@@@?@@@@??@@@?@??@@?@?????>?>?>???????>??>?????=>?????>??????>>?????>?>==>>=>>>>=>>>=>>>=>=>>>====>>>=>>=>>>>>=>??>=;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:AKAKAKKKFKKKKKKKKKFF??:=9,>=??,=?>?.?<>>??=?;>>>>$=2>?<>?<>?><4.(=>>.;>9>><.<;?>=>>>??>>?>>>>>?8/:>?<).>>?5<@@=????????@??=?<@?A@7.:==0=@872*88>=>>><6;< MC:Z:151M MD:Z:34A64C51 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:2 MQ:i:60 OQ:Z:,A<7---A@@?@???=>??>>??????=??>?=6?>??>?>????>?>=>?>>>>>>====::>>=>>==>>>=>>>:=>>=><>=>=>>>====>:=:>>=>>>>>=>>:==>>=>>?@??>@? MC:Z:134M17S MD:Z:34A64C51 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:###############AF7,,,FFKFFAFA<<7KKFKFKAKKKKFFKFKFFFFKFKKFKAAKKKKKKKKKKKKKFFFKKKKKKKKKKF<==??>>>?>>???????????>??>?>>>>>:>?>?>>??>>>??>??:>?=??>??>>>?>>>>>??>>?>>>?>??>?>>>>>?>??>??>???@?@@@>@@>???@?;>@;@??????@?@@?@@A@A?AA@@@@A@AA?A><;:? MC:Z:151M MD:Z:33A15T48C52 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKAFKFKKKKKKKKKKKFKKKFKFKKKKKKKKKKFKKKKKK UQ:i:126 AS:i:136 +HK35MCCXX160204:1:2122:11353:37577 99 4 57194428 60 151M = 57194619 342 AGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTTTAACCCAGAAGGCACATCC ><>?>>???>??????>>??>?>>>>>9>>>7>>?>>?>>>>?>>>?>=;><>>>>?>>>>>??>>?>>>/>>>5<>@>?>=?????:???>???4>??@?<:-.9.=;6?7?A>@??5<;9? MC:Z:151M MD:Z:32A64C33G19 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFAKFKKKKKKKKKKKKKKKKKF,FFFKKKK289>###################################################################################################################################### MC:Z:151M MD:Z:16A2A10 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:2 MQ:i:60 OQ:Z:,,A,,,<,7<,AFAA7F###################################################################################################################################### UQ:i:4 AS:i:20 +HK35MCCXX160204:7:2213:11718:29103 163 4 57194435 60 151M = 57194539 255 TATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACA ==>>@@????????????>?>?>??:>?>?>???>??????>?>?>??@??=>>?@?@?@@@??@?@@@?@@?@@?@@@@??@?@@=9@@@?AAA?A@6=@@7:?A@?@A;@AA@AAA7?=@AB@A@BA@A>B>=9>>>::6> MC:Z:151M MD:Z:25A64C60 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFAKKKKAFA<,>??@??????????>?>?>??9>?>?>???>?>????>?>?=??>??><=?<=?8?>?>>?><:?=??>??>@??@>>=?@@@@@:>>@@@?@@@?@?@?@>>@??<@@@?@?@@?@?AAA@AA?>@AA@AA@AA@B@ABBA@@?<:8> MC:Z:151M MD:Z:23A64C62 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKAFKFKFKKKKKFFKFKKKKKKKKKKKFFKKKKKK@@A@?>9???><7<01&7:6-0/=8?=6./::$>6<=><>5???9-?;>>>>>>=;=>?>>>?>?>-;->>>>?>>?>>>>>>>>>>?>>>>>@??>>= MC:Z:151M MD:Z:4A10A3A64C66 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:4 MQ:i:60 OQ:Z:####################A,A,<@ABBBABA@?@@;@A@A@@AA@A@AAA@?@?@?@@?@@@@?@??@?@@@@?@?@?@>@@@@@????@>@?=@?>>?>?>???>???>?>?>?>???>>>>?>>>??>?????>??>>>??>?????>?>>>?>?>?>?>?@@?>=? MC:Z:151M MD:Z:18A64C67 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:KKA=:=?AAAA>A@A@=7??AA@?@A@A>AAAA@@?@?@@?@@@@?@??@?@@@@?=?@?@?@@@@@???@@>@???>?>?>?>???>???>?>?>?>???>>>>?>?>>?>;????>??>>>??>?????>?>>>?>?>?>?>???@@><5? MC:Z:151M MD:Z:16A64C69 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:F:AA@A@@AA@@@AAAA@@;A>@@?@@@@?@<>@?@@@>9=>@?@?@@@@@???@@?@@??@>=>>@>???>???>?>?>?>???>>>>==?>??>?>???>??>>>??>?????>?>>>?>?>?>?>?????<>:?>=?9>?>?>???>?==???>?>?>??>??>>>?>>?>???>=?>???>??>9???>??>????;=?;?,:><>????@.1=>>>@@?@?@@=<>>?@?@@=@@@??;@8>@@A7+9>>@:A??@@AA@A@@4>?>?>???>?7=???>?>?=??>??>>>?>>?>?>>>>?>?>>=?9=?@?@@@??@@?@@@???@?@@@?@@@?@?@?9=@@@?@@>@?@?@9?@@@@A?A?@>AA;?=@@?A@A@@AA8,9?9?,;8== MC:Z:151M MD:Z:4A64C81 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:2 MQ:i:60 OQ:Z:AAFFAFKKKKKKKKK;7>@??=???>??????>?>?>,>?(000<>>>?>???>>?>=??>?1=??>?'->>$8;==??;('=>>?=;@?:8??>@=>@@==@@@;@?@@?@@@$6=@@?-2<9?<>?@?????5<-<>?<<>--;-:7A4>))?:?A@>(?7## MC:Z:151M MD:Z:2A23T16A14T7T0C32T5C31A7T4 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:10 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKKKKK,FK,777AFFKKKKKKKKKKFKKKK7FKKKK,,FK,AFFFKKA(,FFFKFAKFAAKKFKFFKKFFKKKFKKKKKKKK,AFKKK,7@>@A@;=>@@;A@A@@9>9?????????@45;:??@?@?<1???==<>9>:???;>><>>??>>>?>>?=>=5??>>>>>>>?>?>>>?>?>6?>>4>>?<8?>>>>>>==>>7>=>=,4???>>>9>>>?>>>>>>?>????8> MC:Z:151M MD:Z:64C86 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:FFKFF=@>>?>>>??>>>?=>>>>>>>>?>>?>???>>?>?>>>?>>>?>?;?=>?>>??@;@>???>@6>:>?>?=?@?????@@@@?@?@??@@?A@?AA@=AAA>AA@@A@A@@AAA@@A@@?@@AA?>?3AA>BA@A9.>@@??97## MC:Z:151M MD:Z:63C87 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKFKKKKKFK7FAFKFKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKAKKKKKKKKKKKFFKFKAFKKKKAFF@=>?@>?>????>?>?>??>??>>>?>>?>???>>?>?>?>??>??>?????@@?@@@@@?@?@?@?<@@>??@?@?@@@?@@2/&;4;29.7?@?@A@@AAAA>AA8AA@A?@@A@BAB?A@8=@BA>5:@?21>?>A)@@AA?=;### MC:Z:151M MD:Z:62C77A10 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKFFKKAKFKKKKKK7,,77777,/+/9BB@<@A@>AA@?+4*/833@@AA=:9@@<>?>A?A>@@@?@>?;???==8';;1.1?>@?@>?@>?@<:84>@?@@???;=<><4=>>?>?>?????><9?=>=?>??>>?>?>??>?>???<>;:<> MC:Z:151M MD:Z:12T41C96 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:########FA7<,FAA<,<,,,9<=>=:>><<77@@@?@@@@A=*?.@?@?@??=??????????????<>=?@@@>??@???>?@?@@;@>?>>>?>?>>?>>>>>?>>?>>>>>>>>==?>>>>>?????=>9>>>?>>>>=>?>>>??>>>>>>>??>=>8< MC:Z:151M MD:Z:52C98 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:#AKAKFF.?&<@=@@A@40953/@=>A@@A?A@**-@@<=>8:=?@?@@??@@???9??@@@@?>=>=4-=>=?=?=>????>>9??>??>??>>?>?>??=?>??>>=-=>><> MC:Z:151M MD:Z:13G9G25C55C39C5 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:######KKFAFA,,97>>A?@@@>7@:@?;???@?;<@<6????@@?;>@@??????>?@@>>>>>>?>?>>????>>??9>>>?>??>?>>>>>>>>?>>>>>?????>>9?>>?>>>>>>?>>>??>>>>>>>?>>?>>?@@?>:= MC:Z:151M MD:Z:46C104 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:1 MQ:i:60 OQ:Z:AKFFA789.AB<7?A@?A>A@@@?==3./@A@AA@@@?>AAAA>@?=?<>A?@?@@@??=:5.@?@@?@@@@@??<6?>=;?@?@@@?>?=?>==8?>??>;<9??=??>??>>>>?>??>?>?????>>??>?@>?=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:KF<7,7>.8'>?;?7=/>?;-6?=?,=3-.(8?:>=&9=7((7>=.?@''66>8@@@>16,8>(&(2<1.1?4?<>9?@?@;/8)<>??>?@@-<=-=;5)2'.50)-*7??@?B@<*.3.4);&(*50<.?@:/45< MC:Z:151M MD:Z:26G23T13C86 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:3 MQ:i:60 OQ:Z:AAFA,A,FFKFKKFK8??>>?>>>?>??>?>>==??>??>??7(9==;=??>=>=>?>?==>???=9;=???;>?>???>?????@?@@<@??4??<73@?@8@A>>==*45:29..A@A=4BBAA###### MC:Z:22S129M MD:Z:36C114 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:,:)7-:=@?7-9@?@?->=7-9?;@@@?88?@?@?;>?>/@=>?>@???@@>@????>??>>>>?>?>??????>>>:??>??>>>>??>????>?>????>>>??>????>>????>>>>?>>1>> MC:Z:151M MD:Z:10T22C117 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:2 MQ:i:60 OQ:Z:###AA7,<<,,FF,7?>?>??>??>????>??>?????>?>???>???>?>>>?>???>????>?>??>?????>??>?????????@>@??@@?@?@?@>@@@@@?@:@@?@@?@??>@?@?@@?@@A@@@AAAA@@AA@A@AAAABABBA@??=:9; MC:Z:151M MD:Z:31C119 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKFKKKKA UQ:i:42 AS:i:146 +HT23WCCXX160402:3:1114:23734:24392 99 4 57194495 60 151M = 57194526 182 AGGAACATTCTGGCACCCAACTGTGCCCATCTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGG ?<<>@??>?>??>??>????>??>?????>>????>???>?>?=?>???>????>?>??>?????>??>????>@?>@?????@@?@?@?@?@@@@@?@:@??@@?@???@?@?@@?@?A@@@AAAAA@AA@A@AAA@BABBBA@@?=;9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFKKAKF UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1114:2077:31846 83 4 57194496 60 151M = 57194321 -326 GGAACATTCTGGCACCCAACTGTGCCCATCTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGA ;=:99@:@:1&@??=3*./3:8?(*?>8@?9@<;@?;9?>=@>??=>6@>@@>@@@@@=@<>?>?@=?>>>?>>>;;?>?>???;<7??=??>??>=?>?>?>>?>??>??>?>>??>?>>>?>>??@??=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:=:<=.:@@::;,:??@7@=/<>>?@????@@<=@8?@>8?@?@7<8@??>?@@>?@>;>>??>>?>??>?>>>?>?>?>=>>>>>>?>?>??>>>>>>>?>>?>>??>?>>=>>?=>>?>>????A==?? MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:FAAFA,7FFAAA,AFFF7FA7A@A@@:?7@@?::A@@@A??@???@@@?@@@?@>??@?@@@????@=@>@????@@>?@>>>>??=>?>?=>?>>>?>?>?=?>?????>>:??>?>>>>>>?>?>??>>>>>>>?>>?>>??>?>>?>><7>=?>>????A==?? MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:1 MQ:i:60 OQ:Z:KKAKKKKKKKAF7KKF<@A>:-B3.BB@@>A@?28/A>?@?8/8:AA@AAAAA@@@?>?@@>:?@@><>=>6+-=(@>:>>>:@>??:@=6@??@;>>=>?>??>?<>5==?>>?>>??>?>>?=>=;>>?>>??????>>?>> MC:Z:151M MD:Z:22C55T72 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:#########KF<:<==>>>5>>>>>>>>>=>>>>>>>>=>>>=>>>>>=>>>>=?8??>;>?=(8>>>==>?>??>??>>5=)/?<>67>??????>############################################################## MC:Z:25S126M MD:Z:21C69C7A12G15T0A3T1C15 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:8 MQ:i:60 OQ:Z:AAFFAAKFFKKAKKKKKKKKKFFFFKKKKKKKKKKKKKKKKKKKKKFAFKKAFKA,@B?8A=9/=8=,-96+)=A>A@@A@A:.<<---(@@?<@@@@?@@??=@@?@?@@@@><@>?;@<:@@?@@?@?>?>????>;????>>??>?>;&>>?><4>=>=>>??????>>???>?>@@:=== MC:Z:151M MD:Z:35T3C78T32 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:3 MQ:i:60 OQ:Z:##################A<A@A=A@AAA?A@@>>????=>888<><@@?@@@=7?@@???@@?@@@@@?@@>>?@@?@>@@?????><:??>??>??>??>????>?>?????>>??>????>>????>>>?>>??????>>?>?>??@A>=?> MC:Z:151M MD:Z:17C32T100 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:2 MQ:i:60 OQ:Z:A7KFKKFF=@@>>??:?>>????>???>?>?==7??;9:;=:2=6:=>3.=<?:3=?<98:?9-=4=:=7:>@>6>@8@@??1;>/.6>?@=?4=?>?<@@?7?9*1<&@@A/**>?0-,92B::???#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKFFKKFKKKKKKKKKKKKKKKAF7AKKKKKA7A7FA7AAAFF7,A=?>>>7<:=>>>=>;=>>>=>>>>>=8>>>=>=>>=>>>>?;??>????>????>???=>?>?????<>>?:??>???=>>>????@@@@<@???@@@117<@@??@@@@@?@8/>80-?82)@:9@>9=@@=)/>8?92545 MC:Z:151M MD:Z:10C140 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKK?<>??>?7@@@@?@;.??@?>904;>?><,2>?@?@?@??@?????>??>>?=?>??>?>?????>>??>2?>?>>??>=><2?>>??>???>>?>?>?>????>?????=<6;><@A7=?B;::)@>8/;0/=.=.998*.:@;=;>8@=7:8??;==18<9-<=5>>'88<.9:???<99.8>>?<>>;?;6;.>><=<:-.7?>>>7;>><>=6(/;88:?>?>>>>>>>7>>?=<>>?==<@= MC:Z:151M MD:Z:8C6T54T80 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:FAAKKAAF@?@@=?<@?;;7>-??@@?>@@>:6@?>=@?@?@?@?@?>?8>3:;2=:?>??:;<9?=>>>6>??=?=<<==<=1=.9>??=:;(<:/9=/;=??>=;>><9>????>70;6?>=:?? MC:Z:151M MD:Z:1T149 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:##FAFKAFFA<7????>???>???>?>???>????>?>??>?????>?????@@?@@?@@;@@?@@@>?;?@@@@@@@?<;@@;@@?@?AABBBA<@>@@B:?BA@@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKAKKKKKKKKKFKKKFKKKKKAFKKKKKKKAKKKKKK?@>>????>???>?>?>?>???>????>?>??>?????>>?>????>??>??>?>>??>?>?>?>???????9@???@?@???@?@?@@?@?@???@@@@@?@@?@?@@@?@?@@@?AAAAAA@@@A@A@A@AABB?BBB@??;:;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFFKKKKKKKKKKFKKKFAKKKFKKKKFKFFA< UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1120:7415:18239 163 4 57194519 60 151M = 57194677 309 GCCCATCTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTT >==>??>????>???>?>?>?>???>????>?>??>?????>??>????>???@@?@??@@?@?@>@?@@@@@?@8?@?@@?@???@?@?@@?A@A@@@AAAAA@AA@A@AAA@A@B9BA@B@BB@AAAB@BABABABB@BAB?B?6;64; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKK0>>@?=;8>>>?>?>?;???>????1?>??>>????>>?>????>?@87?/-,=@>@>?@?@=8>@@5?=$/-7/9-58>,-2,,5)(4:54&9>)9/6<-=?6;?A########################################## MC:Z:9S142M MD:Z:89T21A11G3T6C5G10 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:6 MQ:i:60 OQ:Z:AA,FAKKFAAFFKKFKKKAKKKKKKKK>=??@?>>>>>>>>;?=>>=>>>>>>?>?>=??>?>>??>>>=>>?<>>>>>>>>>>>>>><>>>>>?>>9>?>@???<;:>???@<=?;>>>????>???>???1;A:BABABAA@A@A?@?@@>A@AA@AAA@@?@@???@@?@@@@@?@???@?@>@?@?@@@@@??:@???@>?@>>?>?>??>?>?????>>??>??>?=>??>>=>>?>>??????>>?>?>?>????>?????>>??>??@?>=;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:KFKAKA7AFKKKKKKAAFABAB@BABABBBA??9>/@?9BA@ABBA?A@@@@AA@AAAAA@A@@@A@A@A@@?@@@@@>?:@@?@@?@@??@?@?@@???@@@@@??@@?@@>?>>??>?=>>?>>??????>>?>?>?>????>?????>>??>???@>><;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AFKKFKKKKAKFKKKFKKFF@@>@>@?=@A@799=66=?@??@@@@??@@????@?@@?@????????@??=9?>>?>>>><>?>>>??>>>>>>>?>>?>>??>?>>>?>?=>>?>>?????>>=>>>>>>???>>>6>>?>>>?>?>>?@@=<:9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:0 MQ:i:60 OQ:Z:KKFFFKFFKFK:;=??@@@@A@AAA@@@@?>A@@???@?@??@?????@??@??????????@>>>>?@@????>9>>>?>>>>>>?>>>??>>>>>><>>>?>>6?>?>>>>>?>>>?>>???>>>>>>>>>>>>?>>>??>>>>>>?>?>>>??>>=@> MC:Z:151M MD:Z:95T55 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:AKAFKKKKFKKKKKKKKKKFAKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:32 AS:i:146 +HK35MCCXX160204:2:1120:16955:37084 147 4 57194528 60 151M = 57194360 -319 AGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAG =58;>?@AA@B@@AA@@@@@8A@AA?@@@@>?@@@??@@?@@@@@@@@??@@@???????????>:?????>??>??>????>?>?????>>?>>????>>??>>>==>==>>>>>>=>>>>=>=>>>>>>>>>>==>>=>>>>>>>>=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:0 MQ:i:60 OQ:Z:7KKKKKKFKKFKAFFAFKKF7KKKKKFKKKAKKKKKKKKKFKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:5:1116:25499:55614 147 4 57194529 60 151M = 57194321 -359 GTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGG 17:=>?@A?AA>?@A@A@@@B@A@@@A@A@@A@@@@?A@@A@@@???????@?????@@@@@??:???@???????>>=??>>>>>>>>>>?>>??>?>>>>>?>>>?>>???>?>>>>>>>>>>?>>>??>>>>>>?>?>>>?>?>>>:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:7KAAKKKKF>>>>>>>>>?>?>>??>?>>??>>>>?>??>>>>>>>>>>>>>>>>>>>>?>>9>>>?>>>>>>>>>=??>>>>>>>>>>?>?>@????>?>?>>>???@?@@@?????????@@????????::@A@@@@@A@@@@A><:;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKAAKKKFKKKKKKKKKKKFKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1222:7324:66179 83 4 57194533 60 151M = 57194307 -377 TCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAAC >::<>@@A@@?>9>?7A?A??@@@@??@@???@@?@@?@@?@???@?>=@?@?@@@@>=<9??>?>>>>?>?>?>??>>>>>>>?>>?>>??>?>>??>><<>?:>???>?>>>?>>>>>????>??>>?>>??>?>>??>>>???>>>?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:FKKKKKKKKFAFAFF7KFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFAFKKFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2215:29924:23091 163 4 57194536 60 151M = 57194680 295 TGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATT <;=>>@??>>>>>>?>??>?????>??>>>>?>??>?>>>>>>>>?>>>>>??@?@>?:@???@?@?>?@???@@>?>?>?:@???>?@<@@=@@)??@7;=>???15<=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKFKKKFFKKAKKKKKAKFKKKAFFFKFKK,FKK7AAFA?:@@?@@?@@??@????@>???=;??>>??>??>?>?>>>?>>????>=1*?>?>?>????>????=6*??>?????>>>????>@?>=?? MC:Z:151M MD:Z:33A76A17C22 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:FFKFKFKFFKKKFKKFKKKKKKKKKKKKK?@>????>>>??>?????>??>????>>?>??>?>>??>>>?>?>?????>?9??>??>?>>>=>?>??>@>>?>??@@@@?>@?@?@@??@?@@@?@@@@@@???@?@?@??;?@=?@A@AAAA>@@3=@<@@@AB:@@A>@.09= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKFKKKKKKFKKKKKKKKKKKKKKKKFFKKKKAAFF=2@@?@@?@@?@@?=;>??@;;>=58>>??>????>>???>>>>?>>??????>>???>?>??????????>>??>>>???>>>????>>>@@@?2>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:9<>/?>;>>>>>>>=<17=(6-;4-:88&895>:-?;<->=<5>>>:>?>;>=6>>>>>>0;8<><3>?>>>>>>>?9>?=?=3=2> MC:Z:151M MD:Z:3A8C67A18G51 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:4 MQ:i:60 OQ:Z:###############FF,KFF<,,,<,A,,AKKFF7@@>?????>??>??????>??>????>?>???????>@:?@?@@?@?>>@?@@@@?@?@???@@@@@?@?@@?@@@@@?@@@?@@@@AA@@@A-9@A@;>A@@7@A@AA>9<@AB@B@A>>@@82=A>9@??ABAA@@><87# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKK,AFKK>@@>?????>??>????>??>??>?>>??>=4=<>;>?9=?<>:.:<=>?>?=>?8?::>>>?=?3:<>?>=>@@@?@?@@??@@<=?5=;?@>@7;?@?>@??@@AAA&&:@@A############## MC:Z:17S134M MD:Z:145T5 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKF7AFF?@B@@<::@=A@@7=@?@A?>>@>@9@??:@@?@@?@@??@?@?@@?@?@@@@@??@??=>>??>??>?>>>?>>??????>>?>?>?>????>>????>>??>?????>>>????>?>?>>????>????>@>?>=?>>@?>????>??>??>?>>??>?>?>?>?????>?3??>??>?>=>?=??@@>@?@???@@@?@?@@?@?@@@?@?>@@?@@@@@????@??@A@AAAA@AAA@AA@A@@AA@BAA@@B>8?:A9A>@@@B.9AABBA>AA>?##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKFKKFFKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKFFKKKKKKKKKKKKKKFKFFKKKKFKFFKA:?==?<>==?<=?>?9?>:??>>>><<>>>??>==?<<>=*4;3+=;=????:>?@>@@@@@@??1??@>@>?@>@-=>;==?813/60?28>6?A<7@@8/@7=AA?:<9+0:A?69:> MC:Z:84S67M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFKKKKKFKKKAKFKFAKKKAFKFFFFKAFKKKKKFAKKKKKKAAKFKKKKFFKFFKF,7A<,F=9:?--@9>9(?;-<63?;@>;1@;<82?@?:?:??@;>88@@??=>??<>=>??>?>7>??>>??????=58>?>?>;???>??>?====9>>>5??>8==9?8>?>=>??>?;>??????>?>?@>?;@> MC:Z:151M MD:Z:14A11A124 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:2 MQ:i:60 OQ:Z:###############FA7AF,,KAFA,FA,A77KKKFA7KFAA7KKKFKAFKKFFAAKKKKFFKKFKFKKKFKF7KKKKKKKKKKKF7AKKKKKAKKKKKKFKFFFFAKFF<>@??>??>??>??>????>?>???????>?:??>??>?>>??>?@??>?>????@@@?@=@@@@?@@@@@?@@@?@@@@@@???@?@?@?@@@AAA?A@AAAAA@AA6:A@AAAA;;@@=?A7>@99AABBB>3:=97> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKK6==?>=<==>>=>>=>>>>=>=>>>>>>>=>9>==>>=>=-;==?==?=???>>>?????????=>?????>???>??;>>?>>>????@>?@@>=>@@=@@@??=@>>>=?@@=;>>9=<@???AA(@@<@@AA?AA@?>9=??;7:6 MC:Z:151M MD:Z:129A21 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:1 MQ:i:60 OQ:Z:AAAFFKKKAFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKK,AFKKFFKFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKAFFKKKKKKKKKKKKKFAFKKFKKKFFAKFFFFKKK???>??>?>>??>?>?=?>?????>:9??>??>?>>>?>?>>?>@?@>??@<@@@?@@?@?@@@?@;@@@?<@@@@@???@>@?@7>9=;?@@>?=A:?A=?A@A?;>A@?21?857=8?A@A=8;A9@=@==>@A:=9:=*;4## MC:Z:151M MD:Z:149A1 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKK7FAFAFKKFKFKAFKAFKKKAAFKFF77A7<7<7AKFF<7;=?=?>>>>>?>>>>>????>>>6?>7??:=>;>>>>>??=?>?>8>??>??>?>>>>><><>?>;???'+9?>>>???>=??>>;?=?@1@4@@?<><=?@@?@??=?@7>==;:? MC:Z:151M MD:Z:73A68A8 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKFKFAKK=8<->:<:@@@=-,=@@;9<<'-@@8@??@>,@@@;>?=;>7>>>@??@@@@=@>=;?>>?>???????>??>>??>?????>>>????>?>??????????????>??>?>??>???>>????>@@A>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:F7FFAF<<,?:??>??=?>;>?>????>?>?>>???@?@@@@@?=@@?@@@@>=?6?6>@?@>>=>>@@@@?@@@@@??@?@@?>@?A@@?A@@AAA==@>;@A=>A@AA@AA9?@>-*-9@=?=4AAB@@=@A@99;=7 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKFKKKAKKKKKKKKKKKKKFKKKKKKKFFK7K7FKKKFFFFFKKKKKKKKKKKFKKKKKFKFKKKFKKFKKKAAFAA@@5><3AA@>@==/)76>-.&27.2>?5=@@?>1=@<=>>>:*-><.;5((*=??@@@=>='*???>8;:>?>=?=,>>956>9??>?=??3+5/>5>46?>>=:>?>53>> MC:Z:151M MD:Z:144 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:###################################FFFAFF7AA7KFK>>?@?@:??>??>?>>?>>????>?>?>>>?????>????>?????>???>??????>>>???>?=??????@@>@==@?>?@?@@?@@@@??>??@@@@@@@@@@?@@@??@?@?@@??@@=@AAAA@AAA@A@AA@AAAA@A@?<;9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKFFKKKKKKKKKKKKKKKFFKKKKKKKKKKKFKKKKFKKKKKKKFKKAKKKKKKKKKKKKKKKKKFKKKKKFKKA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1213:3234:5862 99 4 57194589 60 151M = 57194718 280 TTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGCTACAAGTTCACT ?><=?:??>??>?>/=?>?>?=>?>?>>>???>?>??>?>???=<<=??>??????>>>?>==7>????>???>@>;>>??@?@:?>@@@??>@?@?>@@@@?>><@>;?@@?@?@@>@@???AA@@>0?:;## MC:Z:151M MD:Z:123A27 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AA>??>?>9==>>>??>?>?>>>?>>??>>?>>>>>?>?>>>?>>?>???>>>>>?>?>@?@>>??@?@?9?@??@>@@?>??@>??@;?????@@???@@?@@AA@A@AA@A??@@@@@@@AAB@BA@@@BBA?AABB@@>;87? MC:Z:151M MD:Z:122A28 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKAA?@,AAB@A@AA@A@AA>AA@@AA@A@?@??@@?@@@@@@??@?@?@?@@@@?@@@@??>@?>@????>>>????>?>?>?????>????>?>?>>?>??>???>>>?>?>???>>>??>????>???>?>????=?? MC:Z:151M MD:Z:120A30 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:7FF;,<.)>@?/.7<&)6%99>5?@?:-,?@>:;,=?@??=9@;<<=?8?@?@?@@@=>-:??<0=?@?@=9@9>>>????>?>=>7>??6>9;6??>??2???,=8?>?>?>?9>;=<>???:>?>?;;>?>??@?>>9> MC:Z:151M MD:Z:117A33 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:###AFKFA,<,,AF<7,A<(,<(AAF7KKF<,,KKF;7>@???@??@@@>?@??@?@?@?@@@@?@@@@@??@???@??@>>>????>?>?>?????>????>?>??>?>>?>???>>??>?>???>>>??>????>???>?>?>??????><=?2?=>>>>>>>>===>>>>>>>>>>=>>>>>=>>>=>>>>>>===>>>>>=>>>>>>>>=>>>=>>>>8?>=9=??>>>?>????????????????=??>??>??>>>???>>?>??@=@@?@@@>?@=??=>>=8<:? MC:Z:151M MD:Z:5T107A37 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAFFF<=?=>>?>??>>>>>>==>??>>>?>>>???>?>???>??=>==>>>>>?=@63>>?8@<@@?????@?@@@@???@?@??5=@@???@A=?>?A@@@@A=>A>>9;?>?=@7>>>)==@B)0@7AABA=>A208=:@3?:<-> MC:Z:151M MD:Z:113A37 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKFKFFKKKKFKFK77FKKAKFKKKKKKKKKKKKKKKKKKKKK7AKKKKKKKAKFFKKKFFKA@@@AA@@@@@@>@@?@??@@???????@@@?@??>>>>>>>?@????<>>>>>>?>?>>>?>=>>?>>>>>>>????>>???>>>>??>>>>?>>>?>>>>>?>???>>>>?>?>??>>>?>?>>>???>?>?@>>== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:7>8;'92<18'3+$%/+45*((=+34&(7?+&(5*,:0,'>;9,89,6'-:++('=;473=+(?-,)--(=>@--0.--,3@@?--).9>;=0A####################### MC:Z:151M MD:Z:10G8T16C1T5A4T2A22A3A11T6G8G41A1 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:13 MQ:i:60 OQ:Z:A,A,A,FFAF,A>A@A666%4A@BAAAAA@AB@?8/?ABAAAA@@AA@@A@A@A@AAAA@AAAA@??@@?@@@@@???@@@@?@?@?@@@@??@@@@?@?@@?@???>???>>>?>?>???>>>??>????>???>?>?>???>??>>?>?@>?=>> MC:Z:151M MD:Z:108A42 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAKKKKAFFA777(7KFKKFFKFFKKFA7,FKKKKKKFFKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HK3T5CCXX160204:6:2116:29863:36311 163 4 57194607 60 151M = 57194661 205 ATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCT =>=<>?>>>>>>>=?>=>?>>>>>?>?>>>?>>?;???>>>>>>>><=?>>>>>>>????@??7>9=8???@?<>??;>>+<@@=<>?????@@???8@?@@A@@?=?@>A@>?>?=;=<7>@>@A>>=?>:?.-9B?@9A@B9@3;=;:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKFKFKKKKKKKKKKKKKKKKKAKKKKKKKKKKKFFKKKKKKKKKKKKKKKAKFAAKKKKKFKKKAFF,AKKFAFKKKKKKKKKK<$==>?/?=@?93*/&,/&)4888.;/049=>>>;=??>@@?=.<9':?7=&?>;,(<:7?=;>>==>8>>?=5=>>9>><98=?>=6=>=>??<=?=<;==?>?>?:?=?==<:=?>?=???=4> MC:Z:151M MD:Z:23A56T70 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:####A78@A@9?62<;<-99@?9)@@?=@?=96@??=9=@@?>@@@@?==@@8=>9>9;><>????+?>??>?=??>???>;>=>?>???=>>??>????>???>?>?>???>??>>?>??>?>;>>@@>=1? MC:Z:151M MD:Z:4G96A49 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:2 MQ:i:60 OQ:Z:#######A,7AAFKF7F<7A<<,AAKKA,KKFAKKFA7KKFF//9;99-9?=>>2:);?A>>=<@>@@<@A@:<8=.80)=984-<27=;9??@9=9?=??>9>@><@>>?@@:>8>?>>>><>>>:4?899>?>?>??>>>?>?>>>?>?>?>>>?>?>>?>>>>?>>>????@===:= MC:Z:151M MD:Z:21T71A57 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:2 MQ:i:60 OQ:Z:FAK7<<<,,AA77,7FFF<7A,?=3(=9/'??189:44>?1>=>>&>>>>>;6<>>>>>=>>=>=>>=>>>=;=>>>=>>>=>=>>=>>>>>>>>=>=>>>?@?>?> MC:Z:151M MD:Z:11A6T10A63A32 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:4 MQ:i:60 OQ:Z:#################################################################FKF<,FA,,FF7AA<<A;?BA?B@AAAAA@A@AA@@>A@AAAA@??@@@@@@@@?@@?@@?@?@@:@?@@?@@????@@@@???@??@>?????>??????>?>?>=9????>?=>>?9?>>????>?>>?????>?>??>9>?>>???>>>?>??@?>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AFKAKA,??>???>?????????=??=???8>;?>>83==:=596=>?>=??>??=9,>=8>>>?>?:>????%(8:5<@@(74?,7>@?@8@@A68?@;92=8### MC:Z:151M MD:Z:80A47T8G10T2 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:4 MQ:i:60 OQ:Z:A,<=????????>?>??>?>?>?????>=?:=??>??<4<.=<>?=??7>5;:?@@??>@@@=<@<6=<=?::=;02<>>@@@??@>@?=9@;6??@<>8A<@8>?9:@:A@######################### MC:Z:151M MD:Z:138C2T4C4 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKFKKFKKKKKKKFKKKKKKKFKAFFKKKKA?<>>??>???>?>??>???????>??;57==>,7>??:?=@5=>@?27@>@=9>;:=7???@?@<7><>@@@??@>;:98@@=@?@?@@A:6-;:6>@@;@-,:>9<=?@A8?<@A>-8389);/1ABBA(;*9@???@;69? MC:Z:151M MD:Z:140T10 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:A,AFFKKFKAFKKKKKKKKKKKKFKKKKKKKKKKA?@@>?>????>?>?????>??????>??>?>>?>>?>??9>???>??>>???????>??>>>>?>???>??@???>@>@??:@@@@?@?@@@@???@????@??@@@@@?@?@?@:@A?@AAAAAAA@AAAA@A@@BBABBA>><:8@ MC:Z:151M MD:Z:11C139 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKKKKKKKKKKKKKKFFFKKFKKKFAFKK< UQ:i:42 AS:i:146 +HT23WCCXX160402:3:1212:9414:2223 99 5 156355142 60 151M = 156355383 392 AAAATACAAAATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGA ??>??@>????>?>?????>??????>??>?>==>>?>??9??>?>??>>???????>??>>>>?>???>?=??@>>@>@>?:@>@@?@?@@@@???@????@?>@@@@@???@=@:??@=>=9*??A@<@AA?A@@AB@BC??@A?<;9@ MC:Z:151M MD:Z:9C141 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKFFKKFKKKFK9>@@@:=>=?@?>?>>=:?>:=>??6<8<9>?9??=><<5>???=<:>9>==>==6==<>81,:><8=><6:<<0>=>==<=9=><=:;>=<<:=>>>>>=>=<:>=>>><<>>=1>?:@> MC:Z:151M MD:Z:5A0C8A135 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:3 MQ:i:60 OQ:Z:##################AAFKKKAAFFKKKKKKFFKKKAAKKKAAAFAFKAKKFFFF;:;><<)?@6AAAAAAAA@A@AA@A@?@;@?@@?@@????@@@@@@@<<2@?@@@@@?@@????>??@@>;????>?>>>???>??>??????>?>??>:>?>????>>>?>????>?>-???>??????>??>?>?>?>;: MC:Z:151M MD:Z:7A143 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:FFFFF<<,AF7KKKKKKKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKAF<>??@?>??????>??>?>>?>>?>??9?=??>??>>????=?>>??>>>>@?@@@?@@@@@???<>??:@?@@?@?@@@@?>?@=>>?;9>;AAAA@A@A9@;@A>=@A9@A&>?B>@AAA-60>BBB@=4AAABBA>########### MC:Z:151M MD:Z:150T0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKAFKKKKFKKKKKKKKKKFKKFFFAA7A?>?????????>??>?>>?>>?>??9=?>?>??>===??=>>=??>>>>?=>=>=:@@@@<;@=:?=:@;>@?@=@????@?;@?A@<=:?A995@A/=@A?+5+?2B>4A9A=<@>)5@@@4AA>=AA>;A/>######### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKFKKKKKKKKKKKKFKFKKKKKFFFKKFFFFKKKKKKKFFAFA@@@@@@@@@?@@?@?@@;@?@@?@@>>>>???????????>?????>??????>?>??>:????>??>>?>?>>>>>>=>=>>>>>>=>=>>=9=>=>>>>===>>>>>>>>>=>>>=>>>>>>>>>=>=>=>==>==>?>?>=>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:0 MQ:i:60 OQ:Z:FAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2121:9475:69273 163 5 156355160 60 151M = 156355757 748 ATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGAGTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAA =@>?>??<>>>:>>8>>>>>>>9>>?>>??>>>>>?>>?=:=>>>:?>>?>=>?>,=>==>9>????=>??????-=8??:=;;>9;=@?.<6?=?)>:99=??@@?@<?@A MC:Z:151M MD:Z:102T48 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKFKKKAKK=??@??>??>=>>?>>?>??9????>??>>???????=??>=>>?>=>=>?????>>?>?>>9????>?>??@?>?>@>???@??@@>@@?@?@@@:?@??=@@@@@=?@@@@?@5?AAAAAA@AAA@AA@A@A@A@??ABB@@A=::@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKAKKKKKFKKKKKKF7FKKKKKKKKKKKKKKKFKFK=??@??>??>?>>?>>?>??9????>??>>?????>>=??>=>==<=??>>????>=?>?>>9????>?>??@?>?>:>??===<<>>=@?@?@@>:>>?<@@@@@>;>@7?@?@>?@A=9?A@A>??AA@A@A?@@A;A@B)?27;9; MC:Z:39M2I110M MD:Z:144T6 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKAFFFKKKFKKKKKAKKKKKKKKKKKKKKKKKKKKAKKKFFAAAFFAKKKKKKFKFFKAKKKKKFAFF@>>>@>>>>>>>>>>>>>>>9>>?>>??>>>>>?>??>>>>=>>?>>?>>??>>?>>?>?>>9>?>>>?>>>>>>>>>>>?>>>:?@?>-<;@?A?=<;A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKFKFFKKKKKFKFKKKKKKKKFKKKKKKKA,FFFKFFKFKFKKKFFKKKFFKKKKKFFKAKKKFK??@?>?????>?>>?????>?>??>9>?>>???>>>>>????>??>???>??????>??>?>?>?>=?>>?>>?@?>=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FKKFKFKKKFKKKKKKKKFKKKKKKKFKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:2124:3772:29683 163 5 156355166 60 151M = 156355259 242 TGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATGTAAAAAAAAAA ,;7>???>>?>>?>??9?>??>??>>>>>?=??>??><><=>????>>@>@>=:@@<@>@????@?,-9?9>=8>>9=@69>===><7>>;>?:@4=9=4?808<04???6@AA><@8=91.<.;##################### MC:Z:48M2I101M MD:Z:139C11 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:,AAFFKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKAFKKKKAKKKKKKKKFKFFKKKAKFKKKKKKK,,AKAKAFFFAFK7AFFAFFFFAF;--8>>@>;-<>>>@>?>:@@:=;=;@@@0>?@>>:187>>=???>>>?==???>??>??3>????:>>??>?>?>?>>>>>??>>;>> MC:Z:151M MD:Z:7T10T4T118 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:#####################################A>==>@>>?>??9????>??>>???????>??>>>>?>???>?????>>?>???:@@@@?@?@@@??=?>????@???@@@@>@?>>?:?@??AAA?3=0;85: MC:Z:46M2I103M MD:Z:147 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKFKKKKFKKFFFKKKKKKKKF7A,AFFKKKKFFKKKKKKFFFKFKKKKAFAF1%A:::+?BA>9@@?9AA>+<;.=/;?6.@?>=>><@@>=@@@><<=?@?@@@=:>>=<0?@???:(?4?@?>:?:>??>???>???=??>:>>=-:>>?>>>????????????>>>>< MC:Z:151M MD:Z:6G6T13T123 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:########FFAA,,,,7<,7,7AF<<,(A<<<,?>9?><=>??>>?????>?<:=9>>>?>?0=>>???>>>?>?8=7????>?>?=>?>5:=>>9.=.<>;>:>;/=>@@:=>>-+*>>3;???>>>50:=@@@@1<3=@=<8=@8/=>>@>0++A@@<@AA>B############ MC:Z:22S129M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAA<,FKKFKKF;????=??>==9>>>9:4?>??>;?;?==9>?<>=;>;?=7;>=???;>??>:<=>@???@=@7=:??<8?@=173@=>@?/=)>@@5A=@?@8=8>>A>>@>9:;)<9A?@7==@?9@>AB################ MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:2 MQ:i:60 OQ:Z:AAFFFKAKKFKKKKFKKKKKFKKFAF:?9?@@>>?????=>???>>>>?>?9?<>???9>>?>??>:??>?>?>????8>??<>>>?7>>????,1>===/>?>@@@@@@@@>>??@;@@=@@@@@@?@@@?@@?@?@?@??/>>>:)9,;@;;;?+@;>@:6:===<==7>@??=9=7??===>?>?=>7=>>????>>>????????==?><?<=;=>=;98>==>>=>>>>>>>>>>>>>>==>>=>>>=?>>=:< MC:Z:151M MD:Z:14T0A1T131 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:5 MQ:i:60 OQ:Z:##AA<7A,7<A@>>???????>??>>>>?>???>?????>>?>?>>:????>?>????>>>?>>>>?>>?????>?>?=?:>?>>????@@@??@@@?@@?@@@@@@?@@>?@@?@=@?@?;@?>@?:@@@@@@AAAAA??@AA@AAA@>@=;9:== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFKKKKKAKKKKFFKFFFAKKKKKKKKKKKFFKFKKKKKKAFAAA7>>>??@>>?>>>?>>>?>>7>?>>?>>>>>>>?>>>>??>>=>>?>>>>>>>?>?>?>?>>>>>>>>??>>>>>>>>>>>?>>>?>>>?>>???=<> MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:2 MQ:i:60 OQ:Z:KKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:141 +HT23WCCXX160402:3:1109:9719:54225 99 5 156355188 60 119M2I30M = 156355371 334 AGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAAAGACAGAAAGAAATCCATGGG ?<;>?@?????>??><>>?>???>?????>>?>?>>9????>?=????>=>>>?>>?????>?>???9>?>>>?>?@?@?@@@@?@>?@>@@@@?@@@==;>@?@?@???A@AAAA?AAAAAA9A9AA@AB:@@B######## MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKKKKKKKKKFKKFKKKKKKKKFAAAKKKKKKK7FAFAKAFKKKKFKKKFKF==>>@????>??>>>>?>???>?????>>?>?>>9????>?>???>>>>?>???@??@@@@@=@>@@@:?@=?@??B>ABBBABB@A?B/8897## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKFKKKKKKKKAKKAFKKKKKKKKKKKAKFKKKKKKKKKKAKKKKKKKFK,?/2=9?8.9->>>?>>>?>>>=>>5/8.0?==&':-=>=>>>>>>>>?=8>?>>>?=;<8>>>>>?===?= MC:Z:151M MD:Z:1T7A17G7G8C64A41 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:6 MQ:i:60 OQ:Z:##############################################AA,<)*?.8>????>7???,;=9@@?=>:8?@-'*A;<728A?8A@3@??>#### MC:Z:4S147M MD:Z:51T43A32T21A0 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:4 MQ:i:60 OQ:Z:>?>?>>9????>?>????>>>?>>>>?>>?????=?>???9>?>>???????>????>??>????@?>@?@>@@?@?@?@>?@?@@??@@@@@@?@@@@@??@@?@@@?@A@@AA=A@@AAAAA>=?@@BBABBB@A?<:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKAKKKKFKKK@?BBBAAB@BB@BAAABBAA>?@AA?;@A@@AAA@@@A?AA@@?<@?@@@?@@@@@?=7@???@?@?????@??@@@@@@@@????>>??>???>??>8>?>????????>?>?>??>?>?>??>???@>>=>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AFAA7KKFAAKKKKFAAFFKKKKKKFKKFKKKFKKKKF99=>A@A?@?@@?@??@@@?@@@?@??????>?>?==?>>?>=????????????>>??>>??>??>>>?>????????>?>?>??>?>?>??>=???@?>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:7KKKKKKKKKKFKKA,FKFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKFKKKKFKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:2112:27976:70170 99 5 156355216 60 91M2I58M = 156355322 257 GGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGAT ?;=>?@>>9????>?>????>>>?>>>>?>>?????>?>???9=?>>???????>????>??>??????>???>@?>@>@>@>?@?@@??@@@@@@@@@@@@@@?9@@?@@??@<.+6@??@@@>@:>@@8@@AA@A>?@@BA@;A?7### MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKAKKKKKFKKA,,???9????>?>????>>>?>=>>?>>?????>?>???9>?>>???????>????>??>??????>???>??>?>?>?>>?>@@>?@?@@@@@@@@@@?6@@?@@@?@@+=<@?@=?49(478:=,:?@>9?=@@<@A9AA::?##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKAKKKKKKKKK,FFKKKFK<7(<77AA,AFKAAFFFFFKKAKKAAF##### UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:1212:14570:23600 163 5 156355220 60 87M2I62M = 156355397 328 AATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCCG =>>=8@???>?>>>>?>>>?>>>>?==>??>?>?>??>:>?>>???>>>>>???>>>=>>@?;>@?@?@??@?@?@>@??@?????@@@@@@@@@@@@@@>??@?@@?@?A;(:@;?<9>2+7?@@@?9@???>?>????>>=?>>>>?>>?????>?>???9>?>>>??????>????>??>??????>???>@>???@@??@@@@@@@@@@@@@@??@>?@@??@@-:=@7<=A5A@@@@A@AA@B?B?:?@>99>; MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKK,25>>4(6;=;<;40*>.73=<+;=:0-:6.*-7.*:7;.;*:<<<0<=72=<:.>7=;;>=?>?>?=+>=?5,>?<6(>0@? MC:Z:77M74S MD:Z:10C9A3T9C1A1A8C4C11A25A14A27A4 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:14 MQ:i:60 OQ:Z:#################################################################A7,F7>?=><:==:>>======>>>>>>=>:>>>9=>===>>3<<<=>??>=?,:-?6><>8><6=>>?????>?=?>>><>############################################################## MC:Z:151M MD:Z:93A3A1A0G3T8T7C11C5 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:8 MQ:i:60 OQ:Z:AAFFFKKKFAFKAFKKKKKFKKKKKKKKKAKKKKKKKFFKK?@>????>>>?>>>>?>>?????>?>???9>?>>?????>?>????>??>??????>???>??>?>?>?>??>@??>@@@@@@@@@@@@@@??@@?@@@?@@??@=?@>>@;<<@??=?@AA@>@8@AA@@AAA??A?=,A9=;:9? MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFFKFFK7AAKAFAAFKKKFK@@@@A@@@@A@@@@@@A@??A??:>8??@???????@????@@??@???>>>???>?>@>?>?>>?>>>>>??>>>>>>>>>?>>>?>>>?>>:>>>>>>>>>?>>>>>>>>>?>?>?>>?>?>>?>>>>>>?>>>>>>>???=@> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:7FFKKKKKFFKKKKKKKFKKKKKKKFKKKF7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HK3T5CCXX160204:1:1218:17736:23952 147 5 156355231 60 151M = 156355040 -342 CCCAGGAGGGGGGGATGGCAGGGAGCCGCGATTGCCCCACGGCACTTCAGCCAGGCAACAGAGAGCGCCGCCATCTAAAAAAAGCAGACAGCACGAAATCCACGGGCTGCACGTCCAGAGAGAAGAGGAGGGATCCGGGAAAACAACAGCA ########################A@81%??/.;=0:*.$*@@?8=>0=5710==9<>9/;/:<%$%4:65*7.98>58,;89')?)-)/')6$9--6-<=;$9.?9<=1-#:7(<.7/9/=,6:/))>><0*/'*)8);>->9-->2*,< MC:Z:151M MD:Z:7T4A3T4T6A11T11T12A1A1T13A0A6A1A8T8T2T12C8T8T5 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:20 MQ:i:60 OQ:Z:########################KKF7,FA,(AF7A,,,,KKKAAA7<)7@?<),8<00&)?==>?<)/>;9040=<5>9??8@?<>?>?>>>>>4>::>?>><=3;>=<><<7><>?>>>>>>?>>?>?>?>>=>?<:?>>>>;>=>>>>;>>9>?>@<=; MC:Z:151M MD:Z:19T10T111A6 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:5 MQ:i:60 OQ:Z:########A7@<@5.?BB>@20@1@=:6B<..A@??ABA>?=>?>9@@<9*=0>=2;;7@4@?;4@=;6.=@>./=@@@@@@@@@@@>?;@@?@@@?<><>?@>????????>?>?>??>?>?>??>??????>>>>???>???>9>>?@>>=?> MC:Z:151M MD:Z:140A8 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:###A7AF<<7,@>@><*&',6>>>??>>>>>>>>?=>>;=>=>+6>>>>=?;=/<>>>?>?>>>==7?>>?>?>>???=>=>???>>>>>>>>>?>>>????>==9> MC:Z:151M MD:Z:23T11C22A92 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:3 MQ:i:60 OQ:Z:FFF7A<,A?@???>?>???7>?>>?????=?>????>??>??????>>??>??>?>?>?>>?>??>>???????????@>=@???@>?@>:>@@/=59;<>@@?><3>@=?2.3:=7?9?>;>8@>5>0338A>A#################### MC:Z:3S148M MD:Z:90T40C8T6 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKF?=>>@??>?>???9>?>>?????=?>????>??>??????>?>?>??>?>?==??@?@@??@@@?@@@@@@7@?=@@?@@@?@@;>?@?@>??0*3/>8@=/=AA@A24>9=4/.+5<9=?AAB9A8@/*:?..BAA######## MC:Z:151M MD:Z:144A6 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKAFKKKKKKKKKKKKKKKKKK7KKFFKKKKKKKK>>>@?>?>?7=7>?9>4=????-6=???>??>??????>???>>?6=?@>@??9=7@>?<@@@?>@;>,>@@@???@?@@@?@7-6)<;=?<6/91<+75;:;>?############################################ MC:Z:151M MD:Z:118A0T9 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKAFFKKAF7FKKKK,AAKKKKKKKKKKKKKKKKKKFK7FKKFKKK7FAKFKAKKKKFKAF,FKKKKKFKKKKKFK7,<,AFFKFA,A7<,<7:;)-7.()?.9?@??@@@@@?@9;)=69,@7>>;>?=,@=@@=@@@@>2?>8?>?>???5??>=?????>>;=7.>><==(@>@=;: MC:Z:151M MD:Z:23C7C4C2C111 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:4 MQ:i:60 OQ:Z:#########################################KKKAA7,,<,,,F,AFKFFKKKKKFFAA,A<<,K=77:@A?@>>A??@A=@@AA@:.=@@@9??=@@??@????@??=;@>?@?>@@????>??>?@>>??>>>?>>>>>>?>>>>??>??>>>=?>?>>?>????>>>>>>?>>>>>>>?>>????>??>>>??>??>???>???@<:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:FFA>?9:107;A?>=0--7/0'9>==<4?<@5.<@=>96<.??<,?@>?>>>>?>>>=?;<><>>>?>>?,=>>>?;5>??>=>?><>>?>?>?>>>=9>>???>>;>??<8>>>>8>=>?>>>>>>?>???>>?>@>>>;> MC:Z:151M MD:Z:22T23T74A27 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:5 MQ:i:60 OQ:Z:7<>??>>>>>>>>?>>>>?>>>?>>?>>>>?>>?>?>?>?>>?>>>>>??????????>???>>79>??=>@@?<:?=:????=3>;:>???@?@?@?@@?==?>>??8:>?=?@A@@<6?2AA>:.:??A=A@//>>?A@AB@@?90.: MC:Z:151M MD:Z:118A14T12T2 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKK7FKKKFKKKKFFKAFKKKFF;A;??A?@3<).12@@A?@@@@@@@?;=??@@?@@@?@><=?@?@@@@@@@@<>2>;@@?@7=>???@@@@??>>>=???>???>?>>?????>??>??????>??>????=9?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:########A@><@>@?>8??;->?:.>68<6:&)<==5=1>;;.>??=?=?=5?=9???<4=>=>?>>:???>9>>????>????>=8>>?>???>?>>?>?@==A> MC:Z:151M MD:Z:0A11T11T49T41A32 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:7 MQ:i:60 OQ:Z:##############################################KKKK;;=@@BABB@B@@A@AAA@@?AAAA@@@???@?@?????@??@@@@@@@@@@@@@@??@@?@@@?@@?>????>@?????>?>?>??>?>?>??>??????>>=>>??>???>9>>????>????>??>??????>??>??>?@??=>? MC:Z:147M4S MD:Z:114A34 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:KAAFFKKKKKKAKFFKKKKKKF9;<>?@@A@@?=@@@A@@=@??????@?@?@?@>=>>>>>????@?>??>>><8>>>>>>>?=>>>>>?>>?>?>?>>?>?>>?>>>>>>?>>>>>>>>>>>?>>>??>>>>?>??>>>?>?>>?>>>>>?>?A>?;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AFKKKFKFFKFAAFKKKKKAFKKKKKKKKKKKKFFAF;<=>0>?<>>?=8?<8>>?>4?>?:;>5>;19>>4=????????6?<=;9-.-<=,6;6?'*19.(5&&6&0=>><(.2%&6<4<>@8?@??@8&<:=0>)(>7>7'$-))%476)<8=A@A<=:1.8//;:=89: MC:Z:151M MD:Z:64A0T3T4T5T2A27A2A4T21G7 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:12 MQ:i:60 OQ:Z:AAFFF,FK,FFKKAKKKFAFFAKKKKAKKKAFK==>>@>????>??>??????>???>??>?>?>?>>>>??>>??????????@@@@??@@?@@@??@??@@?@??>@@@@?@?@?@@?@?@?@A@A?AA;@@@@AAA@@AAA?;?@BB@AABABB>AB=>>?@B@AA@A>A/9=A==#### MC:Z:151M MD:Z:111A37 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKKAKKKKKKKKFKKKFKAFKKFFKKFKKAFK<==?=BA=>A9A1&*@<(2BAAA@A@?7A?<@?:<=,-;AAAAAAAA@@??;@>?@@?>;<<==@@@@@@@@@>@?>;@@?@?@?@@?@@@@@@?>??@@?>???>=<>?????????>?:>??????>??>??>??>??>@>@=== MC:Z:151M MD:Z:41C109 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:(3)?><<-<=>>>>>??>4,?=>5;,<7-79:?<>?=??<6>??=>=?==69/===>>;>5=>>>=>>><==:>>>>>>>9>67<<=<==9= MC:Z:151M MD:Z:11T0T4C6C10T3T1T89 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:7 MQ:i:60 OQ:Z:########################################################A7A,A,KFAA,AFFFFFFFFF7,KFF7A,FA,7AAKFFKFKKF7KKKFFKKKF7A,FF>@;?0=@@>B@@@?@@@?@@???@?@@?@?@>;??>>9??>?>?>??>??????>>=>???>??>>?>>????>????>??>??????>??>??>??>??>??@>=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:7FKKFA<=>=?@??>??>??????>???>??>?>?>?>>?>??>>>????????????@??@>?@@@?@@<;=>>@??@?>=@?@6<>@@?@?@?@@?@AA<@6??>@183@AAA?-8@@>?A.=A:A2A9/A995:3?*7A############### MC:Z:151M MD:Z:108A40 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKFKKKKKKKAFFFFKKKKFFAFFK7FFKKKKKKKKKKKKKAK-.=;,@@@<:?<<>=:.=@@?@???;@?>@=@@>>;>>???>???>9>=????>??8<==;>?>????>??>??>??>??>?>@>>=>> MC:Z:151M MD:Z:1A13T10A80A41 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:##FA<<77A,FFF7777F<7<,FA7,,A7A7@???>??????>???>??>?>?>?>>?>??>>?????>?9??????=>?=??>>??*329=?=??73>:8>??@===?@?>@?@????><>;=>@><>:<)@??=;;@?@=0*/-79?AA@A@@A?/9=0:8;+++A@8:?@ MC:Z:151M MD:Z:105A35A7 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKFKKF>>>>@??>???>??>?>?>?>>>>??>>>?????????????=>??=?>:>?@?>@?=@??@>48@=:>>>:>>*?;.;9.5>?@=################################################################ MC:Z:151M MD:Z:86A11A13G13T14A5G1 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:8 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKFKKKKKKKFKKKKKFKKKKKKKKKKKKKFKKKFKFAKFKKFKFFKKKKF?=>=@?>???>??>?>?>?>>?>??>>??????????????>>??>???>??>>??>?>>?????>?>?>??>@>@?@@>@???>>???@@@??@@@?;;?@?@@?@@@@?@@6@@>:@@?@><)5'(9=?@?A@A@@A@@@AA@=<9;@ MC:Z:151M MD:Z:97A27T23 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKK7KKFFKKFKFF,<,,AAFKFKKKKFKFFKKKKFKFFK UQ:i:53 AS:i:131 +HK3T5CCXX160204:6:2105:9719:19663 99 5 156355278 60 151M = 156355586 459 CAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGA <><=>@?>>>?>>?>?>?>?>=?>>>>>????>???????>>>?=>??>??>>>>>>>>>?>>>>>>>>>?>?>@>@@?@??@??????@??=??9??@????@@??>=9>=???=?@??A@.6589>@A?A=>@<@AAA@>=8<:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFKK??7;<8;?>?<=<>?((,;=??,9;7,,>:>?-&;=>?>?>@@,=?=<=?587,==6(5=-9;=>;)?@######################################################################## MC:Z:151M MD:Z:61C17C20G14C14A16A3 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:6 MQ:i:60 OQ:Z:AAA=5&(????=?::8*0*>=>),<3:&1?:))<71??><=<<>3/>;??>>>=>/<8. MC:Z:117M34S MD:Z:8A7A0G20A4A0A3A46A13 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:10 MQ:i:60 OQ:Z:###########################################################################################A<,FA<(,KKKKFFA<7,,,FFA,,<77(7KF,,A77KKFAAAAFA7KAKKFFAFA,A<, UQ:i:36 AS:i:61 +HT23WCCXX160402:3:1218:21054:9238 163 5 156355281 60 151M = 156355362 232 CCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAGACAGAAAGAAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAAA >=>>=@??>??>?>?>?>>?>??>>????????????>>??>???>??>>???@??@@@@@?@?@>@@?@?@?@@?@@@@?????7????@@@@A@@AAAA.>@AA@AAAB?@==8## MC:Z:151M MD:Z:150T0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK6:???????????@>=8@???@=??=9?????9>>?@?>?=?>?>>@>?>><;>>?><=>>>;6:<>>??>>>>?;??>=?>>?>>>>>?>>?=?=>>>>>>>>?>??@@:=# MC:Z:151M MD:Z:16G77A53A0 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:5 MQ:i:60 OQ:Z:######FA,A,F;=>=@?>?>?>?>>?>?;>=????????????>,<(>???>>>?>(<<=>=&%=87<(9,*,1->-1>>>-(8,2>=?<=3/1)-<><&7(-(18-6(-<>99(,+47.9######################################## MC:Z:151M MD:Z:34C18T7C11C17 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:4 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKAFFKKKKKKKKKKKKK,A,FKKKKFFKK,AAFKF,(FA7A,<,,,7,F,7FFF,,7,7FFKAF<,7,,AFA,7,,,7A,7,,AF<<,,,@>?=>-@<@;1@=;>;,-=<(=???@??@@9=?<>>8>>>?=>?;?:>>(??=??>???=?2>?????>??>??>??>??>?==>???>?????>=>??>@@>>;> MC:Z:151M MD:Z:11A1A39T36A58 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:6 MQ:i:60 OQ:Z:######################FFAKKKKKKAAFKAAFA,,FF=>-?797*,9@>@;.@>?<1..>@?@?@=,@=:=:@@;3-=+>??=>??>=<.9>==<>>>>?>??:?>>>>??>?>>??>?>?>@>>=>> MC:Z:151M MD:Z:14T114 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#########################################A7<<>>>@9=?>??>>????????????>>-:=?>?>=>><3>=?>>>?=??>??=7?:==->:9@=?:/:?8=>3*><28==?1>>*?/9;:>=################################## MC:Z:151M MD:Z:117A1A11A7T3C7 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:AAAFFK???@?>?8@=@@@=@?>????>=>=????>???=>??>????=>>?=>>?>??>??>?>?>?????????>?>??>??=??>>??>@??=>? MC:Z:140M11S MD:Z:5A145 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:##########F<,A<@@?@A=@>8-&@>@=9@?<>.;@?=?>?90>90*?@@@@@>?8=:@@?@?@>;>>@???>????>?<<9';=28>??>>=>??=??=?>?>?=???????>?>??>??>??>>??>>>?>>>????>>?>??@?????>>??>???>??>>??>?>>?????>?>?=??>?>?>??>??@@?????>@@??@?@?@??@@@@?2?@@;@@>@@??@@?@?@A@=:;@<@?A@@@A@AAAAAA8?>A:>@BB*99/+;>?3;@A*)?9;A/*0=?:7:# MC:Z:151M MD:Z:76T47T11T14 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKK7KKKFKKFKKKFFKKKKKKKAAAKAKFKFFAFAKKFAKA<A4:2*.8*=9'-=2?8>?:8??)0(?@@=;?-))?:><=9>8>>2?(/>6+5;>=;65??>??=??==<<<918?>>68;===>>><=>9>=>>=>=>>>==>>=>=>=>=>>9>??===; MC:Z:151M MD:Z:15A131 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:1 MQ:i:60 OQ:Z:###########################A<=>>>>>>?>>>?>>>?>>>>>?>?=;> MC:Z:151M MD:Z:29 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:0 MQ:i:60 OQ:Z:###########################################################################################################################KKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:29 +HK3T5CCXX160204:1:2106:27854:40319 147 5 156355307 60 47S104M = 156354967 -444 GATAGGCCCAATGGACTTCAGGCTAGCAAGAGGGCGAGGTGCCAACAAAAAAAAAAAGACAGAAAGGAATCCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAG #################################################?>?==-?=66)@=9>09)>5-8?7=9+3=728><;7-=@??=<=>?:/=1=>><>:>?=<=>3;-=96??==>??8?>?>>?>>8>?@=<@9 MC:Z:151M MD:Z:19A84 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:#################################################FFFAA,F<<7,KF8;2:;.77-.4-.8A@@@@>9/5/>>@=9>????@@?@@@@@??@@@@@@>@>@@@?@?@@@@??@?@@?@@>??=?>?>?????????>?>??>???;?>>??>?>?>?>??>@?@;>< MC:Z:151M MD:Z:146 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:0 MQ:i:60 OQ:Z:#####KFF?@@9>?BBAA?A@?A@A;A;@A;A?AA??>??>2@<=@@@?:=?@@@@>@?>@?>??@?@@?@?=@?@@?@@?@@>?>?>?????????>?>??>??>??>>??>?>?>>>??>???>?????>=@> MC:Z:151M MD:Z:66A84 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:KKKKFFFKKKFKKKKKFA0@A8?>9?@B@AABABA@@@>AA@@@>8@A@@?A@?@@?@@<8??@@?@?@?@@@@@????>?>??>?==??>>??>?>?>>>??>???>???>????>?>>?@>>>=> MC:Z:151M MD:Z:10T140 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:##############KFFFA,FF7;==<@;>:@@@@@@A@@?@@@@@8@?A?@??@=@86@?????>:???????>>>>@??>???>>7?>??>>>?>?>>>>>?>>?>?>>>>>>>>>?>?>>?>>>>>>>>>>>?>?>>>>?>>>?>?>?>?>>?>?>>>?>?@==5> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:60 OQ:Z:#AAKF@A??5=;:+@A9?ABBAA@@@@B@A@?AA?@=>@=A@?AAA@;@??@@@?@@@@>@@?@@@>@@>@@??@?@@??@?=?@>@@@@@@@??>?>??>??>??>>??>?>?>>>??>???>???>????>?>>??>@?><5> MC:Z:37M2I112M MD:Z:54A96 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#########AAAAAA7A7<,FA<?>>>@?>>??>?>>?????>?>?>??>?==>??>????>>>>>???>:>:?::>?@@@??@@<..>=>@@?@@@????@?.567>==??@>@@@@AAA@AA*8?/*0>;8;>;/(/*//:>/>/*/75?>9B(:A>A@=#### MC:Z:151M MD:Z:53A55T11T18T0C9 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:5 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKAFFKKKKKKKKKKKKKKKKA@@@>@AAA@969A@8@?@@@@>@?>@?>>=:@?@??@?@?@@@@@?>??>??>??>>??>?>?>>>??>???>???>????>?>>??>?@>=7=> MC:Z:91M2I58M MD:Z:53A97 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:A?>?>?>>?????>?>?>??>?>?>??>????>>>>>???>>???>?>?@@@@>;@@@?@@;@@?@@@?@??@?.:8?@??@?@?@@@@AAA?:??@AA@AA*8>@A@B@.6;>AAA@=9AAABBBB/>.+A9AB9B###### MC:Z:151M MD:Z:106T2T40C0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKFKKKKKKKKKKKK,AAKKKKKKKKKKKFKKKAAAFKKKKKK,@@A9>>@A@A5*A;>2..));1>:?@>38-)98==-9<<:8?<??=?>>=>>>>>>?>?>>?>>>>>>>>>?>>>?>>>>>>=>?>?>?>?>>?>?>>>?>>?>>:==<:= MC:Z:43M2I106M MD:Z:50A100 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:1 MQ:i:60 OQ:Z:###########FA?,>=@@???-;;@@;+@@==??=9?@@5-@?@@=@?@9@>>@;????>@?@?=>>96?>>??>?>?>>>??>???>???>????>?>>??>???>;==<:= MC:Z:151M MD:Z:12C0T5T5G3A121 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:5 MQ:i:60 OQ:Z:##########################FA<,A<,,A,,<,,A7,,FAFFFKF,FAKKFFF,AAKKF,KKFFFK?>?>??>?>?>??>????>>>>>???>>???>?=>>???>????>??>??>???>?>:?>=?>=?>>?>@>@?@@@@@@@?@=@@=??->?>=@@>@=@?<6@@?@>?=?@A@A@@>@A=@AA@AA@@:??>>;044A?;<>; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKFKKFKKFKKFKKKFKKKKKKKKKKKAKKAFF,FKFAKKAKFKK<=>>>@>?587>>>?>?>??>????>>=>=???>>???>9>>????>????>?+8?@=@@@=@????6>??@=?@?@?>?@>??@?@?@??@>@@@>7+0@AAAA/->9?*?BB?A.@A>@A*/'.4&950949@@8=8=@ MC:Z:151M MD:Z:39A93C17 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKK7<@??>?>??>?>?>??>????>>>>>???>>???>9>>??>?>????>??>??>???>?>>?>8=>>?>>??>>@?@?@@@@@?@?@@?@@?@???@@?@?@=>?@@?@@@=@@@?AAAA@A@@AA@AAAA;???@ABAAAAA><;9# MC:Z:151M MD:Z:38A112 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFAKKKKKKKFKKKKKKKKKKAFKKKKKKKKFFFFFKFKKKKKFAK# UQ:i:42 AS:i:146 +HK3T5CCXX160204:5:1207:23155:64210 147 5 156355339 60 151M = 156355218 -272 GCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACAT ###########@B:AB:;79>383=>>?@A@AAA@;@9)AAA@AAAA>5><@@@@5>?@@?@@??@?@@?@?@?@@@@@@@@@?@?@@?@@?@@??@@>@?@>>>??>???>???>????>?>>??>??>>9????????>??>?@?>=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:0 MQ:i:60 OQ:Z:###########FF>;>@@??>?8>?>>???>>>?>???>>???>:>>?>???????>??>??>???>?>>?>6==>?>>?>>>????????@>@:>?>?????>?@@?@?@?:?@@?@@@?@@??@@@@?@@?@@?AAAA<@@@AAAA@.>A@?@?@@>;;=: MC:Z:151M MD:Z:32A118 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAAFFKFKKK@BA@@ABAABB@A@A9BA@AB@B?0A>=@?@@?@?@?@@@@@@@>@?@?@@?@@>@@?=@@?@?@?????>???>???>????>?>>??>???>9????????>??>???>?>>;>?=>> MC:Z:87M2I62M MD:Z:30A120 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AFFKKKAKA???>????>>>>>???>>>??>9>>????>????>??>??>???>?>>?>,=>>?>>?;=>?????????>?>??>?==@?=9;;==<=>,8=@?@<@,;99;=0=?=>99?9??>0:/)09%>-:=>699==<8@<83@@8:894 MC:Z:151M MD:Z:27A123 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKK,FKKKKFK?=??@?>??>?>>>>>>??>>???>:>>>??>>>???>>?>??>?>?=?>>?><=>>?>>?>?>?????????>?>??>??>?>>>>?>??@?=<=@?@@@?@@@?@@?@?@>0>=?@@@?;???5>@A@@AA@AA?@@@))@@@><;9A MC:Z:151M MD:Z:26A124 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKAFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKKKKKKF7AFKKKKKKKKK?>?????>>>>>???>>???>?>>????>????->?>??==??>??>@?;=8=?>?@?@?@@>@:@@;@-=8?>?<@<==>9<@;=?@?-);>?7<<7?<:@AAA;?,-)8;@=273,:22&..3?>9@:??9(/*(*.=:?===<)-->@>>=-@@@>@=?@@@@8@?@@?@@?@@?=>>9>?>>??>?>?=7>=?>???>???>????>??>??>???>:????????>??=???>??>>???>???>@@=?>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:0 MQ:i:60 OQ:Z:####FKF<,,77AAFAAA<,,,FFFFA,KKKFKAKKKKKAKKKKKKKKKKFFFAAKKKKKKKKKKKKKKAFFFFFAFKKKKKKKKKF7KFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HJYFJCCXX160204:8:2122:10064:68113 147 5 156355359 60 151M = 156354864 -646 AGGGATACGGGAAAACCTGAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAGAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCA #############################A@=A5;?@>@@7?(.<=:@41?:@9??='??>;=<<=>=46=<,?086/<8;/9-,/>>>;>64>>9/7'?>?>6>?>><855>;>>>>>>>><9,>8-><>;=7>>?><><;>8>;@;><. MC:Z:151M MD:Z:6C1T7A1C38A93 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:5 MQ:i:60 OQ:Z:#############################AK3A5,AAA:A8?A>A:8.2>A=>A>@?@@@@@@@@@?@?@@?>;<@@??@@?@?@???@@?@@@?@@?>???@?@????>???>:????????>??>???>?>>>???>???>>?>???@= MC:Z:29M2I120M MD:Z:4T10A135 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:2 MQ:i:60 OQ:Z:AA7<,,,7<?@?>>???>9>>????>????>??>??>???>?>=?>=?=>?>>?>?>?????????>?>??>??>?>>>@>>@>@>=?@@?@@@?@@@?@@@@?@??@@?@@@>:???@@@@??AA@AA>?A@@AAA@@A@@@AB>BBAA=>=;:: MC:Z:151M MD:Z:13A137 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKAAKFK@?ABBBA?@A>?@A@AAAA@AA@A@AA?@?@@?@?<5>?@=?@?@?@@@@@@@@@?@?@@?@@?@??>@?>@>?>>=??>???>???>????>?>>??>???=9????????>??>???>?>>>???>???>>?>????>??>>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AA,FFFAKKKKKAAAA?>???>9>>>?>>>>???>>?>??>>>?>?>>?>>>>>?>>?>?>?????????>?>??>??>>>>>?@??>@?>??@?@@@>>@@?@??@?@>??@?@@??:??@@@AA@@@A@AAA@@@@@@A@@B@@?/>@=ABB04@?;<;# MC:Z:151M MD:Z:11A139 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFFKKKKKKKKKAKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKFF<,A<?:@?@@?@?@??;,<.@<<1=>/9>>;-1@?:>=.=57@@?;@@>7????????>??>???>=,>>=??>???>>+,?<>== MC:Z:151M MD:Z:1T15T3C129 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:3 MQ:i:60 OQ:Z:################################FFF<78=<<=6:6->--5>>=?9>?<=>:@=>1@?>>:>>=??>??>>??>=:???>?>>?>><>?>9????>???>??>??<>>=?> MC:Z:151M MD:Z:10T20A93 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:##########################################################KF:>>?????????>??>??=???>?>>?>;=>>?@6>@@@@@@?@9>@?@@6=?,1;>>094??9?@?><@><@@?@@?@?@@?@@?AA0)9@1?:.@@@<@<@AA<=>8):@AA@AAA@@8?89>==9A@A>><:6< MC:Z:151M MD:Z:8A142 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKAFKAKKKKAKKK7FKKKKKKKKBABBAA:80@@AA@A@A@@@A@>AAA@@A@AA?==798/.>@??<>>??@@?@@@?@=@>@@@@?@??@@?@@?>9????????>??>???>?>>>???>???>>?>????>>?>?>?>@>>=>> MC:Z:151M MD:Z:0G6T13T129 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:###################KA,KKAAKKKKKF<<,FAKKKKKKKFFKFAKKKFKKKKKFAA77<7,FKKFFAFFAKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:15 AS:i:140 +HT23WCCXX160402:3:1109:9719:54225 147 5 156355371 60 151M = 156355188 -334 AAACGTCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAA @7913/4B:+>:>A==BB?A@A:4<@=B@1BABBAA?>A@A@A@@?6A@???@???@@??????>?@?@@@?@@@?@?@@?@??@@?@@@?9????>???>??>???>?>>>???>???>>?>????>>?>?>?>?>@>>>>> MC:Z:119M2I30M MD:Z:4A146 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:KF<<7,7A<,<7>@>>>???>>?>??>?>?>?>=?>=?>>?>>?=?>?????????>?>??>??>?><>@>@>=8?@?@<><:=@??@7?>@?@@7<;???@=@@??@@@AAA@@?@@?A@@A@?@?=?@@@@@?@@BA@?A:@A@??:7<8 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKAKAKKKKKKAAKKKKAF<????@>>?>>9>>>>>>?>>>?>>>>>>>>>>?>>?>>>>>>?>>?>>>>?>>>?>>>>?>>?>>@??>@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:0 MQ:i:60 OQ:Z:################KKAA,A,,<,,KKKKKKKKKKKKKKKKKKKFKKKKKKF7KKFFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:2112:3478:32514 99 5 156355381 60 151M = 156355523 293 ATTAAACAGTAGGCAGAGGAGGGGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCACAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGCGGGATGTAAAGTCATATGTACAATAAAGTCTTGAAA ?>??>??>???>?>:=>2<<=?>=:>?>?????????>>>??>??>?>;>?%0:===;;?:===?==?????@???=?@@?@@@@:?==;@@>??@@?@@@?@>:?@@>65&&:??/@9.9==A@8.98@2AA############# MC:Z:151M MD:Z:22T33G57A32A3 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKK7FK7FFAKKFAKKKKKKKKKKKKKKKKKKKKKKKAKK,,AAFF?:<=?<1;B@@BBBBA@AA@<@AA?@789>>9AA?A@@?;9@@?@@@?@@@?@@@@?@>8@@?@@??7<=@@9@@@?@@>??>>?>>>???>???>>?>????>>?>?>?>?>??>????>>???@>>=?> MC:Z:151M MD:Z:0T6T143 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:####FFA7-@<@??@=6@>?3?>>@>0>0(>>:@?@=@:==>>??@?>=>>=?>7:46%+==++=>;==>=::7.?==26>7=0??>>?>????<>?>>=?>>===<>>08>>>;;><>? MC:Z:151M MD:Z:89C56 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:################################F7FFF??AB?5@@A@BBBB@@B=BABA@B@@A@AA@@AA@A@A?@?AA@AAA?@@@?@@@@??>6@??@@@?8>@@@@@?@?@@?@@@?@?=????>???>>?>????>>?>?>?>?>??>????>>??????>??>?><>?=>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:?5>AAA@A@A>@?<@3AAA@@@@?@@@@???>@@?@@>?:@@@@@@@??@@?@@@?@???@??>???>>?>????>>?>?>?>?>??>????>>??????>??>??>@?>==> MC:Z:151M MD:Z:1C149 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:################A7FAKKFKKKKKKKFKKKKKFA<7AAKKKKKKAFAAF7KKKKFKKKKKKKKFKFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:2 AS:i:149 +HT23WCCXX160402:3:1204:17898:3419 147 5 156355396 60 151M = 156355225 -322 GAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTA ######>?:AB:@<@AA@A@A?@>@??<@@>9=@@@>@@@?@??@@@?@???>@@????>>?>????>>?>?>?>?>??>????>>??????>??>??>??>@>>>?> MC:Z:82M2I67M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:######A<????>><???<:>>>????>>??>???>?>>>??>>?>>>>>>??>=>==>?>>>?>??>????>>??????>??>??>??>???>>?= MC:Z:87M2I62M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:7KKKFFAKKKKKKKKKKKKKKKKKFKKKKKKKAFAKKKKKFKKKKKKKKKKKKKKKKKKKKKKFAAKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFAA UQ:i:0 AS:i:151 +HJYN2CCXX160123:1:2214:6928:26466 163 5 156355398 60 151M = 156355681 434 GGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAACCATCCAGGAGGGATGTAAAGTCATATGTACAATAGAGTCTTAAAATAGAGACAGAGCTTGAA =:;=6.===>=>><6,=5:>;<>5<9==>;=>>>>==(:<=>:<,<;6<,-,8-8=7>????:>7=>?>>8==)8959?=?>=??>?>';@@?6@6)-)))-.:8=888.@99>>9>>################################# MC:Z:151M MD:Z:88A34A14A5A3A2 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:5 MQ:i:60 OQ:Z:AA?>?>>>?>?????=?=?=>??==>;>??>?>?>=>??==??.>??>????>?>>??>>???9>>???>>?>@@?@@@=@7>@@@??@????@>@@@@7>=>@?<9@?@@=@8@@<@1=-AA?@A=@AAABBAB:2/@<<:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAF,FKKKKFKKKKFFKFKKKKKFKAKFKKKFFKAKKKKKKKKKKKKFAKK,FKKKKKKKKKKKKKKFKKKKKKKKKAFKKKKKKKKFK7FKKKKKKKKKKKFKKKK7FFAFFA?@98???>>8>;;3>?>;>>>?>?>>>>8>?->>>=<>;>7>>???>??>?=?>8>?>??7<7===7>@@?>@@?@>@????8>@??@???<@?@?;?,:?+=<>:A/>=;8@A8,2?;>@A>8B2?>AAAB@@:AABA?=??>;7= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:0 MQ:i:60 OQ:Z:A,AFFK>=<>>>>>>>>=>>>>=>>>>=>=>>=>=>><=>>=>>>>>>>>?????><=??>>???:>>>=??>>>??>???>?<>???>??>>>;:<:==6-2===>:=>=@>@@@@8(;?.,==88?AAAA@AA@A@;.-@@9A??;7## MC:Z:151M MD:Z:118T32 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKAFKKKKKKKKKFKKKKKKKKKKFKKKKKFAFKKKKFKFKKFFKKKKKFAFKKKFKKKKKKKFKKFKFKKKKKKKKAFKKKKFKKKK-=6>?6??;???>=9;/>?>;==8=>?>=>?>?>??>>9=4+9=>????>:,0>==@@@32=7'3->=/>@>?@7<###################################################################### MC:Z:151M MD:Z:94T1T1A19T1T5T20 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:6 MQ:i:60 OQ:Z:AAF,F,F,>>?:>?????????>?>??>??>?8;>??>?>?>>>??>???>???>????=?>>??>????:>8>????>>@??@@@>@>>???8>@????=?@@@@?=@8@?@?@?@;>;@>@66/<<7< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:A,FFFFKKKKKKKKKKKKKKKKKKKKAAKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKAKKKKKKKKKKKKKKKFKKKKAFKKKKKFKKKKKKFKAKKKKKKKAFAKFK7A,AA7AFFF7FKK;<>/<.????????:>?8??>=?<=<9:.:======>?==>>?6?.=>=??@?@<>?4>@@@@:&88>?<@=?@>?;'=;?=>:9:>>?2:.7<;7=?<<@A8-?8@A@A>>7AA@?6B8>/./.->?:?A?4=?@############## MC:Z:151M MD:Z:78A59T11A0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AA>.*@?@<>>?=@>?@>@;6=.>@?@?698>33=@@?@>@?>@??9===2???>???>>>>????>>?>?>?<>.?;>;.>=??<>?>?=?>????5>9>>>?>=?@??:>?'??>>;;98>=?>>>9>;;=??>???=?>?>>??>>?69??>>>=50=81=???==??>?>>>?>>???>=>1&9:=,?@<%-1??@?@=??@<;?>@966.;+;>@?@)>@@?@:>=7A(9..;A@>A=>@A######## MC:Z:151M MD:Z:10A80G38T14G5 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:4 MQ:i:60 OQ:Z:AAFFFFFAFK,FKFFAAAAKFKFFF7F?>??@>?>??>??>?>>>??>?>?>>>?==???>???>????>?>>??>??>@8???=@@@??@??@@@?@??@@@??@??>>@?@@@???@@@@A@A@AA@A>AA@@AAA?>A@BBAAAAB@ABAAA73?ABABA<=<;?99AA<97=> MC:Z:27S124M MD:Z:125 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKFKKKKKKKFFFKKKKKKKKKKKKKKKKKKKKFKFKKKFKKKKKKKKKKKKKKKKKKKKKKKAFKKKFFFKKKKFKKKKKKFKK--/7(7@8/>6:8,--)?:->=5,=@@8)97:9=?@=.<<=<<;>9><;=87+6-;+,(9=*,,.;599+;>998?>>77>,1,=,8>??>0>?;= MC:Z:151M MD:Z:14T19T116 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:2 MQ:i:60 OQ:Z:###############A<,<7<AAAA;AA?>:>:>A/?7@=:@?AAAAA?@?@@?@@?;>@?@??>@@?@@@?@@@?@@@@?>?>@?>@??>9????????>??>???>?>>>???>??>>>?>????>>?>?>?>?>??>????>>??????>??>@?>=@? MC:Z:125M26S MD:Z:124 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AFAKKKKKKFKFF<>?>??>?>>>>?>?>?>;'.9<.>?>???>??>?3?>>>8>???>:>>5?>??>>?2>???>>6>>>?>>?>>>>?>??>>>?<>7?@?7;?@??>>@???>@@@@?@?-=@??@?@?@?<=?@AAA@9@@@@@9);:?>::< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HK35N.1 NM:i:0 MQ:i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arkDuplicates.1L RG:Z:HJYFJ.7 NM:i:2 MQ:i:60 OQ:Z:#<=?@@@>>>??>?>?>?>??>???=???>????>??>??>:>??:>>>?>??>>>=>???7?<95>=<>?>88,2?@@>@>)>>@@@?@?<9<@@@=-9>>>@@@,61>@;':>.9//;:8;:: MC:Z:151M MD:Z:132C18 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKFFKKKKFKAF>??@>>>??>?>?>?>??>???>???>????>??>??>????9>>>@@@@??@@?@@@?@@?=<=?@@@>@?@??@=@<@@@?@@AA@@@@AA@@=8>=@?A@=BABAB?AA@BA=########### MC:Z:151M MD:Z:73T77 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFFKKKKK7FAFFKKFKKKKFKKKKKKFKFKKAK7AFKFKKKKKFFKKKFFF7A>>??>?>?0==??>???=?>?>????>?>>>?>???>1<>>????>>??>???>?>>?33292259=@>???=>?@?@=@?@?@@?@?=@>?@@@@@@?@??@@?@?=@???A@A@AAAA7A@A@A*89/>0?20,,29<;:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AA8;2>?AACA?@BA@A@B9AAA@AAA?2@???@??@@?:@@<@@@@@?@@?@>@>@>??>?;?@>=@:>@===???>????>>??????>??>??8?>>?;?>>??>??==6?=?>=???>?>??>>>?>@?>>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FF777FKKAKAA@@<:@<@@?0,@A@A@?@?5>?8*1478??@@=?@?>>>?>?>>>?@>?>?>?>>?66=>?>?>?>>>>?>>>>=???>>>5??>>>=>?=>>???>>>=>>>>;<7==???>?>??>>>???>>?>?>?@?=>> MC:Z:125M2I24M MD:Z:0T150 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:##KFKFKKF?BA@/9BAA@BAABBAB@@BA>AABBA@B@=7??@A@AAA@AA@AA?@A@@@A@@?@@???@?@@@@??@?@?@?@?@@??@@@??@@@@@@?@?>??>??>?>?????>????>?>?>????>?>??>>>???>>?>????>=>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:#KKFFFKKA,;<@@@@A@@=A@>@A@A@@A3=?-9@??@=?:??????@?==@??????>>>>@>?>>>?>>=:>>>?>>>?>>>>?>>?>>?=?;>>>??>>>>>?>>>?>?>==?8>==;:>>>?>>>?>;>>>=9>>>>?>?:>?5->>> MC:Z:151M MD:Z:147A3 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:###FAAKKKKKKKAKKAKKKKKKF::<@AA@A@>?5==?@@@@=?@??@@@?>???@@>?@@>??@?@@@??>@>???>?>??>????>>??????>??>??>??>?=?????>???=?>????>?>??>=>???>>?>??>@?>=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FFAA<>>?@>>???>???>????>?>>??>????9>>>????>>??>?>?>???;@@??@???>>8>?7??????>?@@@??@6?=??>?A@@A>>@@@8AAAA>AAA>BBAAABABA9:&19=;9AAA/@@>=### MC:Z:151M MD:Z:132T18 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAAFAKAFAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKFKKAKKKKKKKKAKKKKAFFF7FF7FKFKFFFFKKKKKK7A8:<>A@BABBBAAAA?AA@A@A@@AA@AA?@:@@@@@@@@?@@?@@@?@???@@@?@@@??@?@@@@???????>@>??>????>>??????>??>??>??>?>??>??>????>?>?>????>?>??>>>???>>?>??>????@><>??@?:6??>??>?>??>??>???>:>>>????>>??>???>?>><@@??@???<=>@>>@;=@@@@@?;?>@?@??@??@>@<@@>@@?@@'9??@7>0>9@)))<<@@2-<*/92@>ABBB*@9>@A;*@@?8)3< MC:Z:151M MD:Z:136T14 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:58=A5B3=;(7@>@@@@A@?4<<>:@@@@?@@????>??>>???>??<>??96???>>??>>?>?>???????==?>>>>>>>>=>>=>>=>=>>>>>>>>;==>=>=>>>>=>=>>===>>==>>>>>>>>>>>==>>>>>?@??>?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:FA<7?<6>?>?>?>>>?>??>>9>>>>>??>>??>???>=>>>>?>>?>>>>>>????6;>:?>>>?>>?>????>6??????>??>@@?>?>????@@@?>@????????@8??=6@;@@AA@0>A=@>#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:0 MQ:i:60 OQ:Z:AAFAFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK7FK9:@A@AAA@A???@@@?@@@??@?@@@@??@?@?@?@?@@?@@@@??@?@?@?>@>>??>??>?>??>??=???;?>?>??>>>??>>>???>>?>??>???>?=>????????>??>??@??=>? MC:Z:40M2I109M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FFKKKKKKKKKFFFKKKKKFKFAFFKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKFKKFKKAKKKAKKKAKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1204:2138:39088 163 5 156355457 60 151M = 156355736 430 CAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGAGAGCGGTCCTGGATATAATAAATACCTAAGCTAATAATTAATGAAT >?=>??>??>????9>>>????>>??>???>?=>?=?1.:988==>????>>@?@?@?@??<,6>?@??;;?@@@.@???@=>@@45<>?<>@>@;?>>,??==?@>?@@@@>>@?@>?@=?=>??>?:?9???>>=??>?>?>?>==>?=>=>=>?>?>>>>??>?=?>>>>=>??????>??=>? MC:Z:151M MD:Z:5T145 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:####A,KFFK<77<(A,,7AA<7KKFKKKAAA,KKAFAF77FFAAFKFKAKFF,KFFAKKFKKKKKFKFFFKKKKFKFKFKKKKKFK>>>@@>????:>>>????>>??>???>??>???>>?>>>?==????>>?????>?>???????>>????????@>??>???@?@@@@@@@@@@?@?@?@@@@??@@@@@@@?=?A<>AAAA>@AAA?AA7=>AA?9=:;: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKAKFKKKKKKKKKKKFAFKFFFKKKFKKKKFKK7AAKKF7@A/(47>:67A@A?AA>@@??@?=9@@5?@88=?@?@@@@?;@?@?@;@?@@?@@@@?>????@??@@??;>??>?>?????>????>?>?>???<>?=??>>>???>>?>??>???>?>>????????>??>>>?>?>@??:?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:0 MQ:i:60 OQ:Z:-@>9@@?@@>-+>=???>@<@?@?<@??<@@@>@?>?@@>3<;<>>>>9?<;3>?=?<=6;=>?>=?65=->??>???>?>??5??=>> MC:Z:151M MD:Z:0T9G2C14C2G2G5T110 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:#####################################################AKKF7A,FF7KKFKKF,,AAFFKFKAKKKFAKKKAKKKFKKFKKKF7A@>>==>>=>>>=>>=>>>=;====>>=>>>>>=>>>>>=?=:=???=?>>?????>???>??>??=?>?6=?>?;???>?>?>??9=<@=>7.)7::5??@=>;@@@@@71<@@@7??5>?;7?>?>?:>?==:>?>>9;:<>>??;=?;?>?>?>>?8=>??>>?=>???>=6;?+&;=<>5<???@>@?@<>>))>5;:.<<6?>9>?@?@@?@@=.<8.>A89AAA@@9A############# MC:Z:151M MD:Z:93G47 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFAF?B6@.AA>>/93@?@B++@@038@@B3/B@A@>2=/3?.A@8/->6>@@@?@???94@?@@@@@?@>@8>@:>?@@?@=@??@??9@@@<>?>?<>??==9=>????????>????>??>>>?>??>??<;=<<> MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#KFAAAA7A,FKA<,<7;:?AAA@AA6<=@@A=?A@@@AA@>?@AA@@A@??@@?@?????????@??@?:?????>????>?>=>??<>??>????>??????>=?>>>?>>>?>>>?>>??>?>?>>>>>>>>?>>>>?>>>>>?>>>??===?= MC:Z:151M MD:Z:5A145 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:FA,<>??@>??>>>>>>???9>>>>?>>???:?????>>?>?>????=>?>>>>>>?>=?>9?>>>>>>>>>>?>>???????>???@@@@==@@???@@<>@?:<@@@@@@@?@@@=???@@@@???A@@AA=??>@@@>7@::>9 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKFKKKKKKKKKKFKKKKKKKFKKKKKKKFKKKKKKKKKKKAKKKKKKKFFKKKKKKKFFKKAFKKKKKKKKKKKFKKKKKKKKKKKKKKKFAFFFKKF<A72*=.:?>07>((7.;.50).?>>26=,//9?6.:<>>58?8;@>$=@??@;?@;@?@@@@@;>?@@>@?@@>?????>9????>???>?>>>???????>??=>>?????>?>>?>???>?7>??????>???>?>89???=<> MC:Z:95M56S MD:Z:22G128 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:1 MQ:i:60 OQ:Z:AKA:2*=<54.:=@8=>@=:9=A??=86=?+@?@?;?9=>???@??????>>?>4>?>>>?>>>?>>??>>=?>>>>>>>>?>=>>?>>>>>?<=>?>>>?>>>?>>>>??>?<:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:##AA,FAA,<<<<,AFFAFFFAAAFKFFF7?=>8?>>??>????????>????>??>?>?????>?>>??>??>>?>9??>@@?@@?@?@@?@@??@@@AAAAAA>A@AAAAAA@AAAA@AABABBBABABBBA?@BABBBABAAABA@?>;87# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKK?@?>????????>????>??>?>?????>?>>??>??>>>>9??>??>??>?>>=>?>7<>??>????>?@>?@??>@??==@=>@>>>@@@@@@@?@@@@@@?@@@@>==@??@A@A@@>@?=AA@AA@<@;@A;?ABAAA>=9:5 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKF7FKKKKKKKKKKKFKKKKFKKKFFKFFKFFFKKKKKKKKKKKKKFFKKKKFAFKKFFKKKKFAFFFKFFKKF:;=>;5@>;=>*@A@69===:776-/:=?=?@<>3?>?@@@@?>:;?:..89<8'7?>5=5-(49?<+5>&--&(6(->78,'>8?<>>3;2,7:7:>>;>>><8$<-<=<6<7<8;==4>:= MC:Z:151M MD:Z:2T10T4T114T17 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:4 MQ:i:60 OQ:Z:###FFAKAA,A7((<,AA,AFA,,@???>???>;>>>???????>???>>?>?==>?>>?>???>?>>??????>???>?>>>>?>>???>?>@@><8:=>@ABBBBABA@AA@A@AAAAA@A@@@A@@@@?@?:@@??@??@?@?@@@@@@@?@@?@@@@?@@@@?@>@??@>???>?>>>???????>???>>?>?????>=?>???>?>>??????>???>?>>>>?>>???>?>?????><;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1212:7821:62962 163 7 4490636 60 151M = 4490679 194 CTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTG >@=>=@???>??>?>?????>?>>??>??>>?>9??>??>??>?>??>?????@@?@@@@?@@@@?@?@@???@@??@>?@?@@@@@@?@@@@AA@AAAA@@@A@AAA@A@AAA@?@A@BBBABAAABBABBBB>BABBBBBA@@A>=84= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFFFKKKKKKKKKKKKKKKAAKKKKKKKFFKK??ABABA?78?BBBABA9;??;@@@??@@@@@@@??@?@>>>@??@@??@?>???>?>?>>?>>???>?>???>?>>>????>?????????>:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:0 MQ:i:60 OQ:Z:####A>=>A@<8>;=<;>8>;=;:??:=?>=>><;??>??:??;????,>??????=>>?>>>??>>0;7?=88???0>:>=@8>-58?=?<6?=>.:;=9=@@?=8997>@;@(@91/19:952/:=A>AA?AA@>>)-:::)47=.>###### MC:Z:20S131M MD:Z:110A28G11 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFKAAKFFAFFAKAFFKKKFFKKFFKAFKKKKKFKKAKKKK,FKKKKKKFKFKKKKKKKK7AAKAAAKKK7F?+(=/,)8?@A?@>@A?<=*3@@@?@>//.6@4,?3*4:/*6>'?;>)@?:>/?>>:=8?=='0=3'??>;=2>=?;=>?>???>?<>>=>.=>/@=><<> MC:Z:151M MD:Z:38T45T5T28 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:###################################FFKAA<,,<,7,8(,-<9<-&2;(<6,-(=91-&(-8$(,;2,70)==-.49/85-1;=;6,4&(=?=9?;<=?>8(>=><4(9>=89,>?>?=>>??>>??>?>@===>> MC:Z:107M44S MD:Z:2A4T10A17A5A1T16T24T64 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:8 MQ:i:60 OQ:Z:################F7AA,A,,A7,,<,<,-@@8=8@8<:3A==>A@@@@=A@@@@<@:;?@=?@@@@@@@;?=>=::,8?<=8@@=@?=>@?@=>??@??@??>?6?<=>7?;?=?>8=>?>????>>?>?>?>>?>=36== MC:Z:151M MD:Z:11A139 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:####################FA,7,7F9A?:BBB@>?B@9?A=89BAAAB@AA?9>AA@??@@@@AA?;A@>A@@??@?@@>><=<>?@@>;@=?@@@@@??@@@?@????@?????>==???>?>>>?=?>>??????>>?????>>?>?>>>>?>>9>@>==?> MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:####KKFAKFAA7F<@>>=A@@?7:;==?@@@@>@@@?@?@??@??@@???????=?>>>????>??????>??????>??>?>?>>?>>:>???>?=:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:AA,KKFFF7A,FKKKKKKKF?>BBAA@A@@AA@AAAA5AAAAA@?@@@@?@@@?@>=?@@@@@>@?@@@??@?@@@@@??@>@?=>>?>??????>???>?>>>>?>>???>?>??=<>>>>????>??????>>?????>>?>?>>>>?>>9>?????==? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:=A@@>A@@AA?=7@??>===??@??>>@????=@??<@>>?@???@??>>??@??@??>?>>?>>?>>>>>>?>>>?>>>>>?>>>?>>>>>>>>>>>>9=>>>?>>>?=>;>= MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:#KFAA,KKAKKFAAAKKFKKKAK<??>>??=?=>=>>>>?><>=>??>??>>;=?>>?.4>?:???;=:>??;>>.9<7=>=>@>?4=5@??<@>=@=8787=@>???=?;@>@??:5???&50%:0=)=A@@9?=@A?0=7/9<:@?>2B######### MC:Z:151M MD:Z:108A1T19T20 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKFFKKKFKAKFKKKKKKAKFKKKKKKKKAFKKKK,@?>??;>=??>????>??????>??>>>??>=?=>???>??>?>??????>????>>>?>???>?>????>??>@?@?@???@@?@@@@@@??@@>@?@@>@?><@@@@???=?AA@A@@A@A@@@AA@A:?A@@@B@@@A>;:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKFAFKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKFKKFKKKKFFAFFKKKKKKFAFKKFKKKKKKFFKKKKKFAKFFFKFFFKFAFFK UQ:i:0 AS:i:151 +HJYFJCCXX160204:4:2108:6218:43765 147 7 4490678 60 151M = 4490210 -619 CTCTGGCGAATTATTTTAATTTTAGTAGGTTTGGAGTCCTGCTGAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGGTCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAA ###############################>(;<7><;=9:.(?3.=>=;3/>=4>01.*.*/70*?::=??=5/*=>:;'%-9@<5?>@2==::6<=:<<8?==>>?==;;;???>>=.==>=;?=>7:>==6=>?>>>>>?<?>B@9/*@AA@A@=@-@5A97A>=:?*@;A?>?A@>A@=?@A@=?;?>>?@??;<9;9?<@;@????>??>?@???@>??>>>>>>=>>>?:>>>>?>>>?>>>>>>6=<::;9>>>>>>>>>?>;?@<;>= MC:Z:151M MD:Z:31T119 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:1 MQ:i:60 OQ:Z:##KKKKFKA7,,FKFFKKAF,A7AA7FKFFA,KFFKKKKKFKFAAKKKFKFKFKKKKKFKKKKFA<>>=@???>??>????>??????>??>9=??>>?=>????????>???????@@@@???@?@@@>@?@@@??@?>@@@?@???@@?@@@@@@@<AA?+8*?@ABBABAABA@@@ABBAB:9=AA1>9AA######### MC:Z:151M MD:Z:142T8 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKK@?@:8@/AAAAB@AA@@@>?>???>=9=1?>?@??9==>?>?@>>?>>>=<>?<;88<8=>6?>>>?>>>>>?>>>?>>>>>>>>>>>>9>><;;>>>:?>>>@==>A= MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:1 MQ:i:60 OQ:Z:###FA7AKFK<<>9?A?3=.1(/0>+/+1&;7@?7.).<;%';7&;=:6>??78>==3'.19:?==@90.:0%4&.%(1-<:>?;1?=?>>=??=:>>?>>=,7%)6(3>?>'>?>?=;-1>@>>=@> MC:Z:140M11S MD:Z:0A6A5T5T5A3T19C2T10A0A16A18C27C22 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:13 MQ:i:60 OQ:Z:##########################F?@?>?>>>>?>>???>?>???>?>>>????>?>????>>?????>>?>?>>>>?>>9>??>????>?>??@?>=@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:7KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1217:14702:41339 147 7 4490680 60 151M = 4490424 -407 CTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGA @58;<@@>BBAB/BBABB?ABBABABBABBBABAA@AA@AA@A@AAA@@A@@AAAA@@@?@@??@??@@@@@@?@>@?@?;>?==>@@@?>?@@@?@=???>??????>>?????>>?>?>>>>?>>9>??>????>?>???@>>>>> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:KKKKAAA99=?A@BBABBBA@AAAAAA@AAAA@AAA@A???@@@@@@@?@@@??@?@@@@@??@?@@@>@><@@@@?@>@????>>>>?>>??>???>?>>>????>???>??>>?????>>?>?>>>>?>>9>??>????>?>???????=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKFFKKKKKKKKKFKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1222:15047:27732 147 7 4490682 60 151M = 4490474 -359 GGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATT =78;>?BB>AB:BAAB@:BAABBBBABBBABA@?@AAAAAA@AAA@@A?AAAAA@@A@@??;@??@@@@@@?@@@?@????@??@?@?@?@@@?@???@>=>>??????>>?????>>?>?>>>>?>>9>??>????>?>????>@?>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:FFKKAFKK?=>??????>??????>??>>>??>>?>>????????>??????>>???>>?@?@@@?@?@@@?>@@?@@@>@???@@?@@@@@@?@7??@?AAAA??@AAA@@@@@AAAAA@@AABAAABAAB:AB@ABB?A@B/99< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKK=??@???>??????>??>>>??>>?>>????????>?????>>????>>>?>???>?>???>>??>???>?>?>?@>@?@@@@?@@@@@?@@@@@@?@@@@????@@@@@??@?@??@AA@A;@AAAAA@AAA@AABAABBA@A?=:9@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKK UQ:i:0 AS:i:151 +HK3T5CCXX160204:2:2207:23703:12806 163 7 4490688 60 151M = 4490777 240 TTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGAATTTAAAA ==>??@?????????>??>>>??>>?=>????????>??????????@???@?@@@?@?@@@??@@?@@@?@?@?@@?@@@@@@?@@@@@?@@@@@@?@@AA@@>AAAAAA@AA@A@A@AA@A<@AABBBAB?B@9@AAABBA.>??<97@ MC:Z:151M MD:Z:143T7 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKFKKKFKF7AFKKKKF,AAAAA@=A>'4@@@@@@?@@@??>?7@@@@??@?@@@?@??=?@@@@?@;@?@>?>>?>????>?>???>?>>>????>??????>??????>??>?>?>>?>=:>??>????>?>????>??>????@@?<<> MC:Z:147M4S MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:KKAFKFFAKKKKFKAFF,<>?@??>>??>??>>>>>>>>>>>?>>????=>>>>>>>>>?>==>?>>??>?>>>?>>>?>>??>>>>>>?>?????@??@??@????@@?>>?@?????????@?>??????????:???@A@@@@A@@A@@@A@<=@@@@@?><99@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKKKK UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1106:17208:32109 147 7 4490696 60 151M = 4490558 -289 TTTTGAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTACAGGGCTCAAGTGATCCTCCTGCCTCAGCATCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTAAAGGAAGATTTTAAAAATAAAAGT ######?A@:?9/0?@<>/9*?:*-@BAABB??3@AAAAA@@@>=?7><@/A@;AAA@<:?<9459()>:(?@?@?>@>>6>=1@;-@?>@@@@@?>@@>=?>>?>?>>>>?>47>?=>:>=?>:=,???>??>>????????>?@>>><> MC:Z:151M MD:Z:4T45C29C45C24 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:######FA<<::.1?:>9;6@@>?(>0?*A=1AA;9**9.0?*0?>?8A><+@A@%8A9?3)=*-@?@?>?>>>86><()85@)&>>4?>>-;>8:(@>>=>@@>=?>>?>?>>=>=>>7>>6<5>;>>?>??>?>??>>????????>????@=?>>> MC:Z:151M MD:Z:16C26A3C103 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:<@?>>>?8=??=??>?=>??????>????>:=>>??>>>>=??<<=>=??:>?>>>8?>?>:???>=><>?<@?>@@@=>>?:??>-<5>@@>>>?@>??@>;?,/?@@?>1?:6>==A3?8.=?8?>:B########### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFFKKAKKKKK??8A@>A@@=9A(*388A?>@@??@?@:6?@?=>?@@@@?@@@?@????@>))@>)/;2?>=2=)<=99>>?7,???>>???=?>=>>?>>><>>?=<=?=?<=>==??>>????????>??????@?=?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:K?@>>>>?>>>?>>????>>>>>>>>>>?>>>>?>>??>?>>>?>>>?>>??>>>>>>?>>?>>>?>>?>>?=>>>???>>>?>>>>?>???@?>>>>>>>????:??;?@????@>?>>??@@????@AAAA@@@AAAA@AA;<::: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKFKAFKFKKKKKKKKKKKFKFKKKKAFK7FFK< UQ:i:0 AS:i:151 +HT23WCCXX160402:3:1118:10805:3155 83 7 4490705 60 151M = 4490525 -331 GGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTACCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTT #99=?A=C@0ABBAAA@A@AA?@@A@AAAAA@?>?@=>/@??@@@@@@?@@@?@????@??@@@?@?@@@>@??>>@=?>??????>>?????>>?>?>>>>?>>9>>?>????>?>????>??>>??????=?>?????>??>??@>=?? MC:Z:151M MD:Z:73C75C1 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:#FKKKK@@@@B@=9>@@A@>A>??::;AAAAA@AAA@>?@??@?=@=@?@?@?@:@???@@@@?@=@>8@=?@@@@@??@?@????@=>:?@?>????>?>????>??>>????????>>????>??>?>?>???@>?>8= MC:Z:151M MD:Z:143C7 PG:Z:MarkDuplicates.1U RG:Z:HK3T5.5 NM:i:1 MQ:i:60 OQ:Z:##KKKKFKFKA7KKKKKFAA7FA7FKAKFFKAFF7AAKKKKKKKKKKAKKKKKFFKFKKKKKFKFKKKKKKKKKKFKFAKFKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:42 AS:i:146 +HT23WCCXX160402:3:2108:8694:24989 1123 7 4490712 60 151M = 4490801 240 AGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTT ?<=>?@??????>??????>????>>>?>???>?>???>>??>>??>?>>>??>??????>?????>??????>@??@>?>?@@@@@??@?@???@@?@:?@@@@@?@@@?@@@??@@?@AAAAAAAA@AAAAA<@A@BABABBA@><:8@ MC:Z:151M MD:Z:142C8 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK?@??????>??????>????>>>?>???>?>???>>??>>??>?>>>??>??????>?????>??????>@??@>?>?@@@@@??@?@???@@?@:?@@@@@?@@@?@@@??@@??A?AAAAAA@AAAAA@@A@BABABBA@><:<@ MC:Z:151M MD:Z:142C8 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKFKFKKKKKKKKKKKKKFKKKKKKKKKKKKKAK UQ:i:42 AS:i:146 +HJYFJCCXX160204:7:1223:18923:69854 147 7 4490712 60 105M46S = 4490313 -504 AGTCCTGCTAAGTTGCCCATGCTGGGCTCAAACTCCCGGGCTCAAGTCATCCCCCTGCCTCAGCCTCCCAAAGTGCTGGGTTTGCAGATGTGATCCACCGTGCCTTGGTAATTTTTGTATTTTTTTTTTTTTTTTTTTTTTTTTTGAGACG ##############################################################@<==?<=9;:&=/+:(/5.=<4)=8.7&='><7=<1%&-.<6-->+:>????????????==??=???????>>3?=<7< SA:Z:6,167393863,-,108S43M,0,0; MC:Z:151M MD:Z:25T10A10G4T27A24 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:5 MQ:i:60 OQ:Z:##############################################################KFFFKFFA<7,A7,<,7A,FAA,AA,7,F,KFAFA7,,,7F<,,K789@?@AA@@@>AAAAA@@A@A@??@@@@@@?@@@?@????@??@@@?@?@@@?@???@@?@>@??@??>>?????>>?>?>>>>?>>9>??>????=?>????>??>>????????>?????>??>?>?>???????(5??B0@=AAA==:?B@>9.=+:=?><@49?@@@A????>?>?>@;?=@??@??@7?????@??==:>>=>?>>>?>>>>>8<>=>9971>>>?>>>>?>>>?>>>?<>>???>>>>>?>>>?>??>>>?>??>>>??;>?= MC:Z:151M MD:Z:141C9 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:#KFA<,7A??????>???>>>>?>???>?>??=9<;>=?>?>?=<>>>>??4>=@?@@@@@?@@@<@@?@@?@?=??=@@=;?>@?@???@@?A;?AAA@<@AAA@>@8=@A@@@<.@AAABBABBB/9?BBA4;=AB@9=?.+=?>:;:8 MC:Z:151M MD:Z:137C13 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:?>>@@??????????>?>?>???>?>???>>??>?????>?>??>??????>?????>???????????>>>?@?@@@?@@@@?@?@@?@;@@@@@@?@@@?@@@??@@?@@@@@@@@@@@@@AAAAAAAAA@AAA@@AAAAAA??=:9> MC:Z:151M MD:Z:134C16 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKF UQ:i:42 AS:i:146 +HT23WCCXX160402:3:2202:4614:59798 99 7 4490727 60 151M = 4490876 300 CCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTGCAGATGTGATCCACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCA ?==??@???>>>?>???><=???>>??>???>?>>>?>=?3*=8>>?=??>>???=?:8=???>>>>?????><@>??>?=>?@:?@@@>>5;>:<>?)9?@@?>3@?@@@@@-4@@;?8???8..@:.+3/.+.7.*B@?4@A@A@#### MC:Z:151M MD:Z:127C23 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKK=>@@>>>?>???>?>???>>??>???>?>>>??>??????>>????>??????>????>>=>?????>>?>??>>@???:?@@@@@?@@??@?@??@@?=>=><@@?=?@@@@??5@=?<@@?A@@@8>=@.8AA@B@>:BBA9?<:8? MC:Z:151M MD:Z:124C26 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:>>=.??249/8;<@?>4@@?@>=???=?>??>?>?=?9??>>?>???>?>???>>>?3>?<><3>> MC:Z:151M MD:Z:4G5A0A15G23A70C28 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:#############################################################AFF<-A?@AAAAAA@AAA@A@???@?>@@@:@?@@@?=???@@@=>@@@@@@?>@@@@@??@><>>>?=:?;??@>????>?>????>??>>>???????>?????>??>>>?>??>5>>?>?8?>?>?=?>???6>?7>??>??@<<> MC:Z:151M MD:Z:117C33 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:KKKKF<,KKKKKKKKKKKKKKKKKFKKKFKKKFKKKKKKFKKKKKKAKKKKKKKKFKKKKKKKKKFKKKKF7AA@AAA@@????@??@?@?@?@@@?@???@@@@??@@?????@>???>>>>>>>>>?>>:>>?>?>>?>?>???>>??>>????????>?????=??>>>?>??>>>>>>??>>?>>??>???>>??>??>>@@<<@= MC:Z:151M MD:Z:116C34 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:1 MQ:i:60 OQ:Z:KKKKA??@B5AA4ABBA@AAAA=BA99ABABABA@?A?=*>@AA@A@@@@9>??@A?A??@>@?>>=@?=.??@;<@@@?9?>@@?=@@??@>@@@@;@>?????>??>?>?>????>>?>???>?>??>>???>>??>??>>??@>?=>> MC:Z:151M MD:Z:114C36 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:####KFFFA7FF7KKKAFAKKAAKA<?<<6,.9882>>;(),'7%(5(=?>>>=9<,===6=,,;<,=->:-,%>>>6;,:<:-;>;;?=>@= MC:Z:151M MD:Z:19C2C8C1T5A12C2A19C28A5C13 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:10 MQ:i:60 OQ:Z:###################################################################A,F7AKKF@@99;)A@>>7=;8=>>>13@?366=@@?988?<@?@???@@@?<@@@?@@>>7?@6?@?>-=;??<9;?@@@=>>;??==;.>>??>??>>>=?>?>>?>??>;>>9>=34:>7>>>=<;= MC:Z:151M MD:Z:92C58 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:1 MQ:i:60 OQ:Z:#FA7A,A7<77AF<,,,,A,,AFA7,,AFKF77A,KKAAA??>?>?>????>>?>???>?>???=???>>??>??>>???>?>??>??>?>>?>?????>>>@??==? MC:Z:151M MD:Z:91C59 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:KKFFAFKKAA@A>@?@BAAABBBBAB@BBB@AABBBBA@@A@A@@@@A@@;@AA@AAAA@A?@@@@?@@??@@@@@@@@?@@@@@?@@>@?@?@@@@??@?@??>?>???>???>=??>??>>???>?>??>??>?>>?>?????>>>@>?==> MC:Z:151M MD:Z:91C59 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:A,FFKKKFKA>>>>=>>>>>>=>>>>===>>>>>>=>>=>===>>=>:=?????>???>=:77<;?>=??;>?8?;?6>???>98=?>?>?????@@8?5??@?:@=?@@@?=@@?@8>/-);=8..8.<;==?*/9/..*85+5=?<>;1582 MC:Z:151M MD:Z:87C43C19 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKFKKKKKKKKKKKKKKKKKFAAAAAKKFKKAFK>=><>>@@@=;@@??@@?@@@@@???????@@???@?@@??????@@>???>??>???>>??>??>>??>>?>??>?>>?>>?>?????>>>?>>>>??>@<>< MC:Z:151M MD:Z:85C65 PG:Z:MarkDuplicates.18 RG:Z:HK3T5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFKFFA,FA7KA<7,<<,<7KKA=:;78>@)%0)@6:)'@>';/6?;7727?:>-08<6985:%8)@:5-?8(5@?@>@<@>@??????@@;?@??>?>?<>?>>?>???>?????>?>?>>=;>??>?>9?>?>??>??>??>?>?????>>>???>>??>?>???@=?<9> MC:Z:151M MD:Z:5A3T6A61C72 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:4 MQ:i:60 OQ:Z:F?>????>??>???>?????>???>>??>??>????>?>??>??>??>?>?????>>>???>>??>?>?????@=;?> MC:Z:151M MD:Z:77C73 PG:Z:MarkDuplicates.1S RG:Z:HK3T5.2 NM:i:1 MQ:i:60 OQ:Z:@@@A@@9>@6??@@??@<>@@=?@???@@@@@@@@?@@@@><@@?>>@>@??@>???>?>???>???>>??>??>>???>9>?<=??>?>>?>?????>>>?>?=;??>?>?>??>???@><;? MC:Z:151M MD:Z:74C76 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#A,<77A<<??@?>=>>=>=>=>>=>9=>>>>>=>>>=>>>==>>=>>>>>>>>>>>>>>>=>>>>=>=>>>==>>=>>?>>????>???>>??>??>???>>?>??>?>>?=>?>??????@@@??>?@>?@?@@@@=@?9??>AA8=@@?=;9<; MC:Z:151M MD:Z:63C80C6 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKFFFKFFKKKKFKKFKK7AFFKF7AKFFKFK<7 UQ:i:79 AS:i:141 +HK35MCCXX160204:7:1202:18822:11453 147 7 4490792 60 151M = 4490419 -524 ATGGCAGATGTGATCCACCGTGCCTGGCAGCAAGGAAGATTTTAAACATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCAGGACTGAGAATAGTGGTACCCTTGGTGGAAATA ############################################@;)A?66A@<.3@@?@?@@@@;->9>-8)9-/==>7,=.-(>=..(@@?@?@>?=88>=4,;.'.8(;(8446588?;??:??>;>7>=??1>?=3.?<.= MC:Z:151M MD:Z:2T25C0T16A15C55T23A0C7 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:8 MQ:i:60 OQ:Z:############################################F<,KF77KFF,7KKKKKKKKKF,FFF,7,<,,FFFA,A7,,FF7,,KKFKKKKKFAAKFAAKAFF7,<7,7A,<,A7<7<7AKAKKFKKKAFAKFKK<=>?@>>?>?>>>>?=?8>??;??>?=?=???>=??>>=????>=:9????@?6,6::4*/,11;-9;--4>.977@0/=2)7<>:>@??7?*.)..7/8@=+?0=>;3&3@@@B@####################### MC:Z:151M MD:Z:61C20T22C15T6 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:A>=<8@?@=@@<>@?<@>@?>?>@???>?>=>8:8<>?>>>=9?>;??>;><=>?>??>?>==???>>??>=<>?>>< MC:Z:151M MD:Z:11T14C1C8T0T21C80C9 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:#######################################KA<>?>>>>>>??>>8>?>>%9;??>=??:=8-59>=??>?...=.-0-:65*/-4;???:;>@<:-@@@>9?>-=??=/:?-,)69<..7//.+1+0//>?++&0=>>?&4A>.A9/43==#################### MC:Z:151M MD:Z:21T37C59T5 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:<,AAFKFFFFFKKKKFFKKFF(AFKKKKFKKKAKK@>@@?>>;?>>>>?>>>><9?>:8?>?>>>??>??;?>>>?>=>>??>>>>??>>????>>= MC:Z:151M MD:Z:53C79A0C16 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:3 MQ:i:60 OQ:Z:KFKKKFA,>>9&7@BA=AB@BA>AB@A@ABB@@?BBBBAAA@AAAAA@AA@A@A@AAAA@@@?@@@?@?@@@?@@@??>@?@@??@@@>@?@@?@@?@??@??????>>>?>?>>??>?>?>??>??>?>>>???>>??>??>??>>?@>>=>> MC:Z:151M MD:Z:53C80C16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:BA@;@BA@AB@BAB@>@B@ABBAAABBBBA@A@AAAAA@AA@A@@?AA@A@@@?@@@?@?@@@?@@@??@@?@@??@@@>@?@@?@@?@??@??????>>>?>?>>??>?>?>??>??>?>>>???>>??>??>??>>?@>>=>> MC:Z:151M MD:Z:53C80C16 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:<05*(06@@9ABBABA@BAA?A?9BBA@@AAAAA?AA?>>>>A@AA>>?<@>9?@?>@>7>;?;;?>?@@??@@@?>>?>?>>??>?>?>=?>>?>?>>>>?=>>??>??>??>>??@>>=?> MC:Z:151M MD:Z:0T51C80C17 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:######KFAA,7,(,7FF///9<=A@--A<@A=/-8:>8?7?A?>@@>@@@4?>>5>>>*?<>,?:;<==@=?2*<-=)?@?=>29=)*>=*==>*?3=<>?:./><:..>>:?>>>>??>>??@>>=?> MC:Z:151M MD:Z:13C0T2C2C31C79A0C17 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:#####################KAA<<<7<,,,7<@@=AAA@@=A@@?@?@A?AA@@?@@?@@@?@@@@@@@@@??@@@@@?@@@@?@?@@?@@?@@?@?@@@@=8=>??>>???>?>????>??>??>>????>??>?????>?????@??>>< MC:Z:151M MD:Z:50C79A0C19 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:AAFF,A7,,7,7,@9@B5@=0+@AAAAAA?9??@?>@2@@??&8>:.@;??>?@@@3<<@@@?@@@<=@?>)?>:=?=>??>??6>7><66<==829>?>?>>>>??>?><>?>?=7??>??><>>>6=,>?>@>;>?????>???>???>>??>??>????????????>????>?>???>>??>>??>?????>???>>???@??@@@??@???>@>?@@?@?@?@@@@@@@@@??@@?@?@@@@?@??@?@@>@A@AA@@@>-=;@AAAAAA@><:9? MC:Z:151M MD:Z:48C80C21 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKFA,AAKKKKKKKKFKFKK UQ:i:84 AS:i:141 +HK3T5CCXX160204:4:1208:14905:54137 147 7 4490808 60 151M = 4490720 -239 ACCGTGCCTGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAAT ;64;?AAAAAAAAAA?@AAA@A?AAAA@A??@@@?@@?@@@@@@??@@@@@?@@@?@@@@==??@@@>???>?>????>??>??>>????>??>?????>?????????@??>>< MC:Z:151M MD:Z:46C79A0C23 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:3 MQ:i:60 OQ:Z:AKKKKKAKKF@>@A-@@@A8@?@@6:@@>5???.*???9.?4?????@?>=><6????@?>???@=>:8'>>>>?>>88>>>>>?>>?>>>:5>=>??>>>>>>>>>??>>?>>>8>?>>??>??=4:= MC:Z:151M MD:Z:0T41C79A0C27 PG:Z:MarkDuplicates.1I RG:Z:HJYFJ.6 NM:i:4 MQ:i:60 OQ:Z:#####A<,KKFFKKFF<7,,,,<<<6+>:=>59>?==>9=>=?=??8==.<;%>=>=-<5>>?>>>?>8===?9=?>>?>>=><<<*<((8=?7820*=1=8/+<=3)).&<.?=>8.*2?>>?7==???################### MC:Z:2S149M MD:Z:30T7C20T50T2C5C3A18T1G6 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:9 MQ:i:60 OQ:Z:A??=>>>==>>=>>>>>>>>>>>>>>>>>>>>>>=>>>=<>>>>5>>>>>>>=>>>>=>>=>>=>>>=<>>?>>?>>>)8?=???>????<<=>>??>?>??>???>?=2*8>??>.7=????-:7777;>@7>>@??(6=#### MC:Z:151M MD:Z:38C42T36A0C27T3 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:5 MQ:i:60 OQ:Z:@>>??>>??>>????????>?????>??>>>?>??>>>>>>??>>?>>?>>>??>>>?>>?>>??>>?>??>?>>?>>?>>?@@?>>??????@???9A>778@>-..-9>30)8?:5+=/*//0?6>98:?A?@><@@?@@??@@@???@@>@>7-6.>:=9<;0??==-/>;@=3:=?=??>=>>???>=??>:<=>/>:=>??????>???@>?==> MC:Z:151M MD:Z:4C2A28T1C5G74C31 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:6 MQ:i:60 OQ:Z:#########A7K>@@?>>??>>????????>?????>??>?>?>???>>>?>>??>?>???>???>>??>??>>??>>?>?:>@>>@>???@@@@@@@@@?@???@?@?@?@@>=>?@??@>>=??@?@AA@AA@@AAAAA@AA@AAB@BAA@249:73: MC:Z:151M MD:Z:35C79A0C34 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKFFFKKKFK?@>>>?>,;+4<>??=>???6/,3<>(58(=<<33-:';>2;<>>&7.;8(-9<>2>@?;>'-7(9>5?7'=.9*<(.:<(()(-.6==7?=?6:-;,)5>=############################################# MC:Z:151M MD:Z:34C6T24G21C26C0G14T4A8 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:8 MQ:i:60 OQ:Z:>??>???????????????>??>;=?>???>>??>??@?@>@@@??@@?@@?@@@??@>@@?@?:<@?@?@<,>8=@@@A@?@@@A9?=@A?A???-.?@@>A@=<<@BA:<;;284 MC:Z:151M MD:Z:34C79A0C35 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKFKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKFAKFFKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKK7?>>=???>>????????>?????>??>?>?>???>>>?>???>?>???>??@??@@?@>>?@@?>@=?@?@?8?>+@?@@@@@@<;@????@?@A@=?AA@A@>A8>9A@@@@A@@B?@9>@?BAABB98A>>=A9>=@?199=9797## MC:Z:151M MD:Z:32C80C35T1 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKFFKKKK7FA,FKKKKKKKAAKKFKKKFKKKAFKKFKKAF<>???>>>>?????>?????>>?>>>>>?>>>>>>>>>>>?=>>>>>??>>>?>>?>>??>>?>??>?>>?>>?>>???>>>>>>>>>?>>?>?>?@????@???@??>>;??@@?@@??@@@@@?@@@AAA@>9@?A@@@@;<@@<<6= MC:Z:151M MD:Z:29C79A0C40 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKKKKKKKKKKKKKKF??????????>?????>??>?>?>???>>>?>???>?>?>>>>??>>>?>>?>>??>>?>??>?>>?>>?>>????>>>>>?>>??>?>?>@@?@??@???@@@?>@??@@?@@??@@@@@?@@?@AA@A@@A@A@@A<@AA?<;8? MC:Z:151M MD:Z:28C79A0C41 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKF7 UQ:i:121 AS:i:136 +HK35MCCXX160204:4:2105:3021:44556 83 7 4490826 60 8S143M = 4490621 -348 GCCCAAAAGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCG ###############?66?@@?=<6?>:???:>.6>??1==?=???5>?>??:===>=>>;>'=<=>=>=>===><=>=9=>>=>;==>>>>=>>=;>>>>=>>>>>>>,>>>>>>>>>>??>=<5> MC:Z:128M23S MD:Z:28C79A0C33 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:3 MQ:i:60 OQ:Z:###############F77FKKFAA7AFKKKKKKKKAKKKAF,AFKK7FFAKFFAFKAKKFKKKFKFF?????>??>?>?>???>>>?>???>?>??>=>??>>>?>>?>>??>>?>??>?>>?>>?>>????>>>>>?>>??=?>?>???@??@???@@@??@??@@?@@??@@@@@?@@@@@@??>@AA@>@?:@AAA@;<<:? MC:Z:151M MD:Z:26C80C43 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKFKKK=>>?>>>>>>>>>>=>>>>=>=>>>==>>=>>>=>>>>>=>=?=>??>??;???>>?>??>?>>??>?>????>>=?:??>>??>?>?@@@<@?>??*;087=?.<33(=?:67# MC:Z:151M MD:Z:24C79A0C45 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKAKKKKKKKKKKKKKKKFKKKKKKFFFK@=A@?<@/BABA@@@A@=@@>><>@?A@@@@@@????@??=?@=@??@@??@??@?@?????@??<:>==>??>=?>??>?>:>??>>>>?>>>?;>>>>>>>>>??>>?>>>>>>>>?>>>>>>>?>>>>9>>?>>>>??==;>= MC:Z:151M MD:Z:23C79A0C46 PG:Z:MarkDuplicates.1E RG:Z:HK35M.1 NM:i:3 MQ:i:60 OQ:Z:7KA7KA=?@@??>?????>??>?>?>???>>>?>???>?>???>???=>??>??>>??>>?>??>?>>?>>?>?????@??@>@>?@@?@?@?@@?@?>@?@@?>>??@??@@:?@??>@@@@=@?=@>A@A9?A<@?347?@A8@ABA??=### MC:Z:151M MD:Z:22C80C47 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKFFFKKKKFKKAAKKKFFFKK8:>?@AAA?B?AA@A@A@AAA>@@A@AAA@??@@@?@?@??@?=@@?>6?@???@@?@@?@??@?@@@>@>?>>??>>??>?>?>??>??>?9>>????>??>??=??>>?????>??>???>?????????9????>>>?>>@??>?>????????>??>?>?>???>>>?>???>?>???>???>>??>??>>??>?@?@@?@??@@@@@@@@@@>???@@?@?:=@??<2A?>>A@@A@@AA@AA@@AAAAAABBABBB@>33@BA??@;?AB>A@BB@BB8<:7;; MC:Z:151M MD:Z:19C80C50 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKFFKKKKKKK@?>????>???>?>?>??>??>?>>>????>??>??>??=>?????>??>???>?????????9????>>>?>>?>?@>?>?? MC:Z:151M MD:Z:18C79A0C51 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:KKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFAA UQ:i:126 AS:i:136 +HT23WCCXX160402:3:1222:5883:12314 99 7 4490838 60 151M = 4490981 294 AATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGG ?>??=?=88>==>>>?>???>?>?=?>>??>>><>?89=8=<=?>??>?>>?>>><>?==?>>=6>?@=9>??@?6;>>>>=;=?@@-;/?7@=@?@?<@=@@@?<3*8@>7=@-=AAA@?*C6>1/8,?9;6:: MC:Z:151M MD:Z:16C80C53 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:A?>?>???>?>?>???>>>?>>?==?>=??>??=>>?>>??>>??=>?>>=>><=???@?@@;@@?@@@<9.:>*?<.;<@@?@??@?@@@=.?(1=8>=A/@A>@=A@A>B8>44BB=?&:.=?1+/9>@ABA@@B/@/3;#### MC:Z:151M MD:Z:13C80C4A51 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKFKFFKFAKKFKKKKKFKKKFKKKKKKKFFKFFFKFFAFKKKKKKAKKKKKKAA,AA,AA,?=>???>>>=>>>==>>>>>>=>>>>>=>>>>=>>=>>=>>>==>=>>=>==>>=>=>>>>>>>>>>>==>>>?=??????>??>?????>??>>?????>???????????????>>??@??@;?9?@??@@?@@@?@@??@??=;;=; MC:Z:151M MD:Z:11C80C58 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAFKKKKKKKKKFKKFFKKKKK?=?@@@?>>>???>>??>???>?????>???>>??>-=<>??>>=>>???>?=?>>?===;??=>6$87=8?@@@;=>>>;1595=?-88?@<<>@>6>>@@@-96:@<@?@>99/959&9######################### MC:Z:151M MD:Z:11C59T19A0C31C2C5T17 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:7 MQ:i:60 OQ:Z:AAFFFKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKK,FAFKKKFFKFKAKFFKKKKFKFFKFFFFKKFKA,A7F7FKKKAFKFFF7<77FK,AAKKAAFKF7FFKKK,<7<=>???>?>???>>>?>???>?>???>4;163874>?>>??>>?>??>?>>@??@?@@@@@@@@@?@@><=?@?@@@?@??@@?A@>@?@@AAAAA?@A@A9?@89=B1493%3*4$&;2@@@>A.7>==@A######## MC:Z:151M MD:Z:10C80C35T18C4 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKK7<77777?A@BA@>@@:69===>@?@@@@>@?@?@?@@>?AA>@A@@A@A@?????????@???>>?>??@??@?????????@????????????>>?>>>>>?>>?>>>>>>>?>>>>9>>?>>>>?=>>>?>=??>>>>>??>=>= MC:Z:151M MD:Z:9C80C60 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:2 MQ:i:60 OQ:Z:FFKKKKKFKKKKKA7<72>?=?>?63=>>?>?=?>?==??>?>;.=??<===;7?*.:3=?>?>>.==?==?/=7;==:8?>6%99:=>:?:??<;>=3;>@@?<:==?;-:;><>@@@?=@@78@@8<8;@?=<<96?(B@>>AA@AA@7>888=@A@?@?602; MC:Z:151M MD:Z:8C59T20C61 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AA,FFAKKKAAFKKKKKFKKKFFKKKKFA,FKKFAFF<7K7,A7AKKKKK,FFKFAK,F>?@>???>>??>???>?????>???>>??>??>???>>?>??>?>???>?>?@@@@@@@@@@??@@?@?@<@>?@??@?@@@@@?5>?=?@-?@@AAA=?AA@AAAAA@A?'0?;?@A9/;AAA99<:BAAABABBB2<@######## MC:Z:151M MD:Z:7C79A0C62 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKFKKKKKKKKKKKK7FKAFK,FKKKKKAFKKFKKKKKFKF,7=78<;?>>;?;?>8>?>???>;9=>>?8>??>>??=-=;>?7?>87>9@8<5><@<<@->@??<5>5<@>>>?)>;9;@@@>@/=>??@<7?@??@@<7?87-7@=@-,276?;??:$8;A:@6*@*8&@.<>?>@@########## MC:Z:8S143M MD:Z:7C79A0C23G19A14T3 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:6 MQ:i:60 OQ:Z:,<>???>>==>>>>>>=>>>>>=>>>>=>>=>>=>>>==>=>>=>==>>=>=>>>>>>>>>>>==>>=>=>>>??>>??>?????>>?>>?????>???????????????>>???>>?:>??@??>@?@@@@@@@@@??@?@>@?><:9? MC:Z:151M MD:Z:5C79A0C64 PG:Z:MarkDuplicates.1H RG:Z:HK35M.2 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKFKKKFKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKFKFAFKKKFKK UQ:i:121 AS:i:136 +HT23WCCXX160402:3:2211:23744:3137 163 7 4490851 60 138M13S = 4491104 394 TTCTTGGATGTTTGAATGCACTAGTCAACAGATAGGAGAGGCGGCATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAACAGATAGAAATAATCAATGGGCTGGCCGGCTGACCTCCATCGTTTGGGCCGCGTTGATGGT <<-?><>.>>.5>>--5:(?>0==>>??9==>96:(;==))(%1&/>=?>??@@@5>;:;:??@=-==?6?@.4)/?>>;8=;95*6>############################################################### MC:Z:10S141M MD:Z:3C17A17A1A2A39C5T5A7A10G14T7 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:11 MQ:i:60 OQ:Z:<<,FFFK,FF,7FF,,7A,FK,AFKKKKFAFK<7A,==???>???>?>???>???=>??>??=>??>>?>??>?>=?=>?>?????????>?=>?=>?>?>??>?>>????@?@>=@??@@?@@??@@@@@?@@?@@@?@??>@???@:?=@@?>AA@AA@A@?AAA@@?>A@>?BBAA=?=:>@ MC:Z:151M MD:Z:0C79A0C69 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKFKKKKKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKFKFKKKKKAKKFFKKFKKKKFAKKKKK6>>>;29&>>>>?>>:<(,/->9:''5,<;<.==96<>:<.-(,6?8>6,->??>>(-*50;/697==8>-/4<=??@>=@%/*?;<=@=>????86=<1&51(&46@;17@9)?..:>@?<######################### MC:Z:151M MD:Z:24A45C14A22A18T1T6T0G9A3 PG:Z:MarkDuplicates.1K RG:Z:HJYFJ.8 NM:i:9 MQ:i:60 OQ:Z:?=>>9'9?>.=?6==?=-=(9>?7-(;'<-7<)>78>?==:=?1-1.:.4>@<@)8>:@??@'33>=1=?>=8./>,5=;?.8-.>7>?@<@@6)27>+8*?6/+1=/2+?@*?..8/8..38A2A@@@##################### MC:Z:151M MD:Z:49T5T13A0C33G16G1G8 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:7 MQ:i:60 OQ:Z:AAAFFA,?=>?????>>??;??>>??>>?>??>?=>?>=?=???????5<>6>;95;(;><;=;===;><5/4>=>?>.76>:>>?=?4>>,>@79==48.84=################################################## MC:Z:109S42M MD:Z:68A0C31C13T3T3A5T3T6^C2G8 PG:Z:MarkDuplicates.1P RG:Z:HK3T5.3 NM:i:10 MQ:i:40 OQ:Z:AAFFFKKKKKKKKFKKKFKKKKKKKKKKFKKFFKFKKKKKKK<=>=@???>??>??>???>>?>??>?>>??>?>???????????>>??>?>??????>??>?????>>?>>??@?@?@@@@@@@@@@@>@@@??@@@??@;?@@@??@@?@@@@@@@@@??????A?AA@A@AAA@A@@AAA@@??=98? MC:Z:151M MD:Z:67A0C82 PG:Z:MarkDuplicates.1T RG:Z:HK3T5.4 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKFKKKKFKKKFKFKKKKKKFKKKKK UQ:i:79 AS:i:141 +HK3T5CCXX160204:4:1106:17563:36698 163 7 4490870 60 151M = 4491037 318 ACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACAGTTTGAGTTTGAGACAAGGGAAGGGGCCC :8>???>??>??>???>>?>??>?>>??>?>???????????>>?=>??>>@@>=?@>;<<@@@?:=??@@;;>?@?@?<@@@@@@@@@@?9>@>??@;9>=:939:3>@@A@5-7;?@<88)8@A>:???>?:>=??>;=>??>2<>?>>?>?????????>;>>5==6=<8?=>?>>:>?????>>:>>??>??>???@?@>@@?@>@<@?9>>59=>/:>?@>?>=???=?@>.?7->@>=@=3?>@@?.??8@0:4=##### MC:Z:151M MD:Z:64C85T0 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFF=@???@5???@@?@@??@>??>@??>??>???>?????????9????>=>?>>>>??>?????>>?>????>?>???>?>>?????>????@?=<??A<<9BAAAAAB@B78:@@5.@@=A><@?@@?@>4>>A>=?@@?==?@???=?=????????@@??>???>>?=>?>>>>><<4>>>>9>>?<<=>?>>>>>>>??>>>>>>>???>>?>??>>?>>>>?>>>>?>>>>>?>?>@= MC:Z:151M MD:Z:61C89 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:1 MQ:i:60 OQ:Z:##F9..>?5-,>5=@;=@<:>>:8>;):7.>?>=><7=>??>>?=?=??>>>??>>>>>>>????>>=0 MC:Z:151M MD:Z:1T7T51C89 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:3 MQ:i:60 OQ:Z:#########################################F>9@@AAA9;@@@@@>=>@A>@?>@????@???@@??????@@?@@??@@@@@?=@?@=;>>>??@???@9???????????>?>>??>>>>>>>???>>?>??>>?>>>??>>=??>>>?>>?@?@;:< MC:Z:151M MD:Z:0C58C23G67 PG:Z:MarkDuplicates.1N RG:Z:HK3T5.8 NM:i:3 MQ:i:60 OQ:Z:####KKKKKKKKKKKKA7AFF@@>B:@B@7=@AB@@>;*?+..2?9*&+8;@/)0@?@?7=1=@A??/>9)??@>><4-@?@@?>@<@?*??>9,->68@:84><5;:@@@@?=?>=>?>??>?>:??>>?>????>?>=??>?>>????>>??????>>?=.?=<> MC:Z:151M MD:Z:1A30C26C13A77 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:4 MQ:i:60 OQ:Z:##FKFKA>==><@@??@@@@?@<>@@@?<@@>>>>@@@@=:@==.8@8@?=>?>>?@.?>>?;??>>=>6???>?>?<9>?>>?????>??????>>??@@>=?= MC:Z:151M MD:Z:57A0C44T47 PG:Z:MarkDuplicates.1C RG:Z:HK35M.7 NM:i:3 MQ:i:60 OQ:Z:A<<,,FAF<,<<7<7<7A<>?><=>?>>?>>?>>???>>>>>>>=:?=89><>>=1=9>?78>?>>>-=::+>=>?>,???>>??>>9>>?;==7794==?><88??9<>>=6?;'>>;?@(<@??@????<;49@9?@((%)<@:::><:;= MC:Z:151M MD:Z:54A0C57T5T31 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:4 MQ:i:60 OQ:Z:AAAFFKKKKKAFFKKKKKKKKKKKKKKKKKKKAFKK7AKAKFF7FAKKFAKKKKK,FF<,FAFKK,KAKKKKKKKFKKKKAKKKFFFAFAAAFKKF>>>=>>>>>>>>>=>=:>>=>=>>>>>>=>;=>>>;>=>>>=?????>??===???????<;97<>?7=?<<>>??=??>??><9:9==;=-:<>=??<=@@??;?..8>?=??>?@>;A1?/=<==9@@==29@.82?=### MC:Z:151M MD:Z:42C105A2 PG:Z:MarkDuplicates.1B RG:Z:HK35M.4 NM:i:2 MQ:i:60 OQ:Z:AAAFFKKKKKKKKKKKKFKKFKKKKFKKKKKKKKAKKKKAKFKKKKKKKKKKKKFFFKKKKKKKAAAAFFKKKKKFFK?>??@????9???????>>?=>?>>???>?>>?>?????>78<>;=:>?>?????????<:;?>=>>?<8<>@=??9@>@?1;@<-8>@?@?>88?@???<@?=?@@@=@AA9AAAAAA;>A=>?A:?;7??>;;98 MC:Z:151M MD:Z:41C109 PG:Z:MarkDuplicates.1A RG:Z:HK35M.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKAKKKKKKKKKFFKKKKKKKKKKKKKKKKKKKAFFFAF>A?<)ABBB@=BBABABBAA@@?@A@@@;=A;>AA@AAAA@?@?@@@@@@@@;=;?@@@@@@@@@:@@@@:??@??@@@@>;@@@@??@@@@>@?@?@??>?>>?????>??????>>???????>?????>????????@>>;>= MC:Z:151M MD:Z:38C112 PG:Z:MarkDuplicates.1D RG:Z:HK35M.6 NM:i:1 MQ:i:60 OQ:Z:7AFKFAFFA,KKKKFAKKKFKKKKKKFFKKKKKF==>???>>;>>?>?>??>?>>?>??>??>>?>>==<>?=-<>?>?>??>?7.=>?=@;94<<:??@@??@>?@:>?@<@;2==??<=6>????:?>A@7/(>/3<<>/>*3*%:5@A/*5?@AA########################## MC:Z:151M MD:Z:30C107G8 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKA@2;??AA=*>90:AAB@7=@A?A@A>7@@@=<8A7<.AAAA:=??=1>:@??@?@@@@>?:@?@@?>=>:>?@@???>=?????>>??=????>??>???>???>??>?><.=@?>==> MC:Z:151M MD:Z:25A0C124 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:########A7<@@>?>????>?>>?>?>???>>?>>?????>??:>:>??????9@@<80?8/<41<=@@??=@17:@@==:>@4=??;<@??@<:?@@@=5;7?A:==--87:@78:A?9-?AAB@8?;B>A@B;>?@)>*:@99@=796: MC:Z:151M MD:Z:25C125 PG:Z:MarkDuplicates.1G RG:Z:HK35M.3 NM:i:1 MQ:i:60 OQ:Z:?>??>?>>?>?????>>?>>??>??>>?????>??=???>?>>???>>?9>???>>??>??>??=?@>>?>???@@@@?@>@@@?@??@@@???@@?@@@@@@@@?@A@A@AAAAAAAA@A@@?@?B@@AA@@?<<93= MC:Z:151M MD:Z:24C126 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKFKKKKKKKKKKKKFKKKKKKKKKKKKKKKKFKFFKKKKKKKKKAKKKFKKKKKKKFKKKKAFFAFAAAF?:@@-@@?=;)(=>>9>>?&?%<<.*<>>?=.??>>?>??==>(<:;>>>>=?>>>?>>?=8=?=>>>>>=?>??>??>>>>>>>>>>?>>=>??>>>:>>>>=?>>?>?>@??=@> MC:Z:151M MD:Z:8C11A0A7A1T119 PG:Z:MarkDuplicates.1L RG:Z:HJYFJ.7 NM:i:5 MQ:i:60 OQ:Z:######F<@>>?????>??????>>???????>??>??>>??????>???>??>?>>>>???>>9??>?>??>?>?>@?>>=? MC:Z:151M MD:Z:8C142 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:#KKKFKKKKKKKKKKKFKKKKKKKKKKFF>>>=>==>>>>>=>>>>>>>>>>>=>>>==>>>==>9=>>>>=??>?????>???>>>>??????>?>???>=?=???>>>??>>>>>@@@@@>@>?@7>?@@@@@@@><>@??>=?@A.9:=>A@>;5?=..91<><:.*=:=:5,6 MC:Z:151M MD:Z:5A0C144 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFKKKKKFKKKKKKKKKKKKKKKKFKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFFKKKKKKKKKKKFFKKKKKFFFFK7FFKKKKKKKA8?:@@89BBAA@@=@7AB@@A8:?@?@@@=>@?@AAA?@???=@@@@?@?@?>=;??@@@@@?@>8==@??@@>@@@@?><???>??>?>>>>=??>>9??>?>??>?>?>?>@?>7=> MC:Z:151M MD:Z:0C5C144 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:2 MQ:i:60 OQ:Z:###AA7<??>>?????>?>=>??>>>>>?>>>>9>>>;>>??>??>>>>>>>>>>>????=?>@,=;A@>@@@@@@A@A@AA?AA;2=?72?= MC:Z:151M MD:Z:0C150 PG:Z:MarkDuplicates.17 RG:Z:HK35M.8 NM:i:1 MQ:i:60 OQ:Z:<<>>?>??>??>>?????>??>?>?<=>>???5=8:??>?:6?=;>;>=?=?@<@@-=-9.-->:>.0?/;=?6?>?=?;??07>?AA??7/>A39AAA@A//.+*;/>4A>/>5@@9A/>:@*%090>/*=.@>8797=3 MC:Z:151M MD:Z:127A19 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFKFFFKKKKKKKKFKKKKKKFKAFKKKKK><:>?????>??>???>?>>?:;<>?9>???>>=?=??>7=.--=<>>>?<=???96:.=?==(=?@?>?>==???@=*<=.:@@>?@.6>;*09>>68@>=?=@7@####################### MD:Z:69A57 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:1 OQ:Z:A,FFF=/.)%.):-99-?A@>>?????>??>???>?>>???>>?:>??=>>??>??>?=>???>>>>?>????>?8>??>?>>???>5>>?>>>???@@@>@@>>@@?@@@@@@@@@<>@??=@??@???@@@>??;???;<@A>:-::=@A>=9?@@@??=9:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HK35N.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKFKKKKKKKKKKKKKKKK?=?>?>?????>??>???>?>>???>>?9>?>?>>??>??>??>???>>>>@?@@@@?@?@@@=;??@@@???=>???@@@@@@@@@@?>>>?A?A:??@A?@AA?AA?7@?BBA@>1A@;A=?9?###### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1O RG:Z:HT23W.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKFFKKKKKKKKAFKKKKKKKKKKKKKKAAAFKFK=@@AAAAAA<@@>7???>??@??@?@<@@@??@@@@@@?@?@@@?@??@@@@@?>??????>??>=???>?????>???????????>??>?>?>>???>>:??=?>??==6?>?>??>:??>????>?@?>=?> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1R RG:Z:HK3T5.7 NM:i:0 MQ:i:60 OQ:Z:KKKKKA>@?????>??>??>???????>???>??>?>>=>???>>9??>?>??>?>?>?>??>9??>????>??>>@@><??@?>>>>>==>>>==>9=>>>==>>=>>>>>=>>>====>>>>>>=><>>>=>==>>>===>>===>>>??>????>???????????????>>:>=>?>=>???>?08>>>@?;??@;?3>?@@?;??.7@A@?AA@@B=><<979 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HJYN2.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK>?@@@?>><<>?>>>>9>>>>>>>?><>>>=>>>>>>>>>>>==>>?9>>>>?>>>??>>>>?>>>><>???@>?@?@@????@???;>@><5?6<8;87>???@?;;:?????9=.=.9:=.==76=@@=0@9@@@?@@6:;<9:98? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1Q RG:Z:HK3T5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFKKKKKFFKKKKKKKKKKKKKKKKFFKKKKKKKKKKKKKKKKKKK>>??@?>>>>>?>==>9>;>=>>>?>>>>>;<>>=>>>>>>>>>>>?/>>>>?>>>??>>>??>>>77>??>;<>?>??9=<>?>>?>><9=?>=29<@88..<>??@=?:@@9<@A?@A>@@A@>@@###### MC:Z:112S39M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HJYFJ.5 NM:i:0 MQ:i:40 OQ:Z:AAFFFKKKKKKKKKFFKKKFAFKKKKKKKKKF?@@>>?@@>>?:ABBAA@@A@@A@A@@AA@@@@@A>??A@?@?@@??@??@@@???@@???@??@@@@@@@=@@??@?@@?@@@?>?>>>>>>?>>=>??>>>:>>>?>?>>?>?>?>?>=9>>>???>>??>>??>>????=>=?= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HJYFJ.4 NM:i:0 MQ:i:60 OQ:Z:AF7< VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.10 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.U +@PG ID:MarkDuplicates.11 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.X +@PG ID:MarkDuplicates.12 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.W +@PG ID:MarkDuplicates.13 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.R +@PG ID:MarkDuplicates.14 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Q +@PG ID:MarkDuplicates.15 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.T +@PG ID:MarkDuplicates.16 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.S +@PG ID:MarkDuplicates.17 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.N +@PG ID:MarkDuplicates.18 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.M +@PG ID:MarkDuplicates.19 VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.P +@PG ID:MarkDuplicates.1A VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.O +@PG ID:MarkDuplicates.1B VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.J +@PG ID:MarkDuplicates.1C VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.I +@PG ID:MarkDuplicates.1D VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.L +@PG ID:MarkDuplicates.1E VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.K +@PG ID:MarkDuplicates.1F VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.F +@PG ID:MarkDuplicates.1G VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.E +@PG ID:MarkDuplicates.1H VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.H +@PG ID:MarkDuplicates.1I VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.G +@PG ID:MarkDuplicates.1J VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.B +@PG ID:MarkDuplicates.1K VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.A +@PG ID:MarkDuplicates.1L VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.D +@PG ID:MarkDuplicates.1M VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.C +@PG ID:MarkDuplicates.1N VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates +@PG ID:MarkDuplicates.1O VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.Y +@PG ID:MarkDuplicates.A VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.B VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.C VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.D VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.E VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.F VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.G VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT27VCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT27VCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.H VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.I VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.J VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.K VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.L VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.M VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT2V5CCXX, /pod/pod2temp/pod2/tmp/proctmp/HT2V5CCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.N VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3GGCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3GGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.6 +@PG ID:MarkDuplicates.O VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3GGCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3GGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.4 +@PG ID:MarkDuplicates.P VN:d0bf042 CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3GGCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3GGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem +@PG ID:MarkDuplicates.Q VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.R VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.S VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.3 +@PG ID:MarkDuplicates.T VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.U VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.1 +@PG ID:MarkDuplicates.V VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.7 +@PG ID:MarkDuplicates.W VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.2 +@PG ID:MarkDuplicates.X VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.bam] OUTPUT=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod3temp/pod2/tmp/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HT3HVCCXX, /pod/pod3temp/pod2/tmp/proctmp/HT3HVCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.5 +@PG ID:MarkDuplicates.Y VN:f6e71fe CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/pod/pod2temp/pod2/tmp/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.bam] OUTPUT=/pod/pod2temp/pod2/tmp/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam METRICS_FILE=/pod/pod2temp/pod2/tmp/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.duplicate_metrics OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch/HTJCGCCXX, /pod/pod2temp/pod2/tmp/proctmp/HTJCGCCXX] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:bwamem.8 +@PG ID:MarkDuplicates.Z VN:f3922be CL:picard.sam.markduplicates.MarkDuplicates READ_ONE_BARCODE_TAG=RX INPUT=[/seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT27VCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT27VCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT27VCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT27VCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT27VCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT27VCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT27VCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT27VCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT27VCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT2V5CCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT2V5CCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT2V5CCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT2V5CCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT2V5CCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT2V5CCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT2V5CCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3GGCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3GGCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3GGCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3GGCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/1/NormPond-544924/HT3HVCCXX.1.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/2/NormPond-544924/HT3HVCCXX.2.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/3/NormPond-544924/HT3HVCCXX.3.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/4/NormPond-544924/HT3HVCCXX.4.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/5/NormPond-544924/HT3HVCCXX.5.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/6/NormPond-544924/HT3HVCCXX.6.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/7/NormPond-544924/HT3HVCCXX.7.aligned.duplicates_marked.bam, /seq/picard/HT3HVCCXX/C1-318_2016-06-30_2016-07-03/8/NormPond-544924/HT3HVCCXX.8.aligned.duplicates_marked.bam, /seq/picard/HTJCGCCXX/C1-318_2016-06-15_2016-06-18/5/NormPond-544924/HTJCGCCXX.5.aligned.duplicates_marked.bam] OUTPUT=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicates_marked.bam METRICS_FILE=/seq/picard_aggregation/G100862/NA12892/v2/NA12892.duplicate_metrics COMMENT=[aggregation_version=2] OPTICAL_DUPLICATE_PIXEL_DISTANCE=2500 TMP_DIR=[/local/scratch, /pod/pod2temp/temp/picard/G100862.NA12892] VALIDATION_STRINGENCY=SILENT CREATE_INDEX=true CREATE_MD5_FILE=true MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX= VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=1 MAX_RECORDS_IN_RAM=500000 GA4GH_CLIENT_SECRETS=client_secrets.json PN:MarkDuplicates PP:MarkDuplicates.V +@PG ID:bwamem VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 10 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.1 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 5 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.2 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 6 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.3 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.4 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 8 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.5 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 7 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.6 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 13 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.7 VN:0.7.7-r441 CL:/seq/software/picard/1.1098/3rd_party/bwa_mem/bwa mem -M -t 11 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout PN:bwamem +@PG ID:bwamem.8 VN:0.7.7-r441 CL:/seq/software/picard/1.1092/3rd_party/bwa_mem/bwa mem -M -t 9 -p /seq/references/Homo_sapiens_assembly19/v1/Homo_sapiens_assembly19.fasta /dev/stdin > /dev/stdout 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=;<@???@@@???>???@@>>?@?@?????????@@@>??@@?@>@@>>>@>?@:@?A@>>>>>?A@@@AA??@A>?@A?:AAA;AA?>@??@>@A@@A?@@@?@@??22@?@?;@@;A<;<<>?9A@A???@@>>?@?@?????????@@@>??@@=@>@@>>?@>?@:??A@>@@A?@A@@@AA?>@A>?@A?>@AA@AA??@A?@@@A?A@??>A?:>??@A@@AAA@@=A9A@BB@A<><2@4;79# MC:Z:151M MD:Z:144A6 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJAFFJJJJJJJJJJJJJJJAFJFJJJJFFJJJJJJFFJJFFFJAFFJA?=>@A@@?@????>@????@?@????>@>??@@@???@@?@>@@???@>?@?@?@@??@@??@@@?@@??@@???@??=@@?@???@@?>@AA?@@??@A@@@A@@@A@?@A@A@@A@@>A@@@A@;ABAAABA@ABAAABAAAA?=;;@ MC:Z:20S22M1D109M MD:Z:93^GAAG45A12 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:5 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJFJFFJJJJJJFJJJJJJAJJJJJJJJJJJJJJJJJJJFFJJ UQ:i:41 AS:i:136 +HT3HVCCXX160630:6:1106:5304:31916 147 1 14804629 60 151M = 14804438 -342 TTTCTAGAGAATTCAGGACAAGAAAAATCACTAGGACTGAGATGGGTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA ######BA8?A222@;9?1@A70@A?8?6/A@>.7:@@A?:.<0:AA@??@???@?>>@?@?@?@?@5??@,<= MC:Z:151M MD:Z:29C111A9 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:2 MQ:i:60 OQ:Z:######F<79.65??<:@/98>>?>=???@@>?>==@?@==>8?;@1>7<(/;;<<.8<@A-8<>@?8=;@@.?@@A@A=AA99783?86*>@9>0>B@@0:)1:=9@A==A>@2;2>5=AAA??@A'A*$+AABA@AB>3<=(@3?:(:9# MC:Z:151M MD:Z:128A9A8A3 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:3 MQ:i:60 OQ:Z:AAAF7FFJ<-77FJA@@@@A7+?=9)4<:;.3349%A<<0+5749$6=&>=2;=;25.1<@?881=4>8?>:@<6@>?=@9?@?>?><5??@;>@?31<@@>?@@>??@=>@@>?@@=?A61?1?:0=?=0;>/.1;:0?>:>?<=??>:.2;;19/.@;>;@???@.@;>.>><=???>>@??????>????@???@<>=@??>@ MC:Z:151M MD:Z:12A9C4A4T94A18 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:5 MQ:i:60 OQ:Z:###############################A-JJJ7-F7-A-A7-FF<-AA---<7-JA7?:+@A@;*;?<>=;1>A?A6:;;';??>3=:1'@3=*>=@?>=@?@7<@>??@>?@@==;@>6:@>7>8?@8?@8??@9=>@.=><4??@=<???=6>@>??@57>?<>;?<=?=<=;67;?7??A;<98> MC:Z:151M MD:Z:29T82A38 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:A7-7FF<<-JJJ<-FJFFFF-FFJFAFA7-FJA77A7-7F>5.6?<6<9<=@?-?@;<>=*//00(?9>9?>6/>:;6@<>+@??9?@<>:?<>>;<7>>@?>9=?<>@68/>?>:@>??@?80@=????>>=:??@>?@@==>= MC:Z:151M MD:Z:5C9T34A59A22 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:4 MQ:i:60 OQ:Z:###############################FA-F7-7-<-AFA7-7FA<7?@?@?@?@@??@@?>??@??@??@???<@???@@>?@??@@??@@@??@???@???@???@?>?@?????@>?@???@???@???@?@@@@??@@@?A?@@A@@@A@A@A@@?A@@AA@@@A@@@A@B??AABBAABBBAAA?><<@ MC:Z:151M MD:Z:98A52 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJFJJJJJJJFJAJAFJJJJJJJJJJJJJFJJJ UQ:i:41 AS:i:146 +HTJCGCCXX160615:5:2205:28341:19961 99 1 14804674 54 113M38S = 14804981 458 GTGGAGAGATGGATGGATAGATGGATGGGTGGATAGATGGATGGATAGAAGGAAGGAAGGAAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGATGGGA ??>>?@?????>>>?>????>>?>>?@>>>?>>>>@>>@>???>;>>?>?@???????@>??@???@?????@??@???@:?=@???@??>??>?@?>?@???@@@@A??@@?@@A@@?498=A@<@A@@@AA>?><<# SA:Z:1,14804721,+,76S21M1D54M,54,3; MC:Z:151M MD:Z:96A16 PG:Z:MarkDuplicates.1O RG:Z:HTJCG.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJF.@46.8717.275-03@<@;?7/@??A@@?0;@?@?@?;??9@=>>@??>@???@???@?>?????@:??@@???@==>= MC:Z:151M MD:Z:45T50A16 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:2 MQ:i:60 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SA:Z:1,14804721,-,64S21M1D66M,0,4; MD:Z:14G10T58A16 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:3 OQ:Z:########################################JAAFAFFFFA<@??;@??=@1?>@>:?A?=95?>@@???@>>=2= MC:Z:151M MD:Z:78A31 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:#############################################################################A7-363);,(??;@@A2?@@A86?A18@@8;=A?@@A?6@@@A@?@?6?@?=?@>=?>;??@>??@>6?@>>=?;;?@>??@>>8@>?@?>>?@>?=<<*?@>=?=>=@6;>?@>=?@>??@>=?@;=?;???@>?@@??@@A;<<> MC:Z:151M MD:Z:71A79 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:#AJAA-F-<--7--FAAJJJ7FJFFA=5@>>>8???@>>??;>>>?+>?=>>@>>>>==>??????>:=<@??@???@?=?@>??@?=??>39=?>?=?=>?:9@A@@@==@9@@<;=?=:;@?:4>@@A?@@A<8<8>@@A@@@AA;@@A??@A>>B4<;9 MC:Z:151M MD:Z:70A80 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAF-FJF?@A?@@??@@??@@@>????>@???????@??>@?=>??@??@???@???@???@???@??>@?>?@???@?>?@???@???@???@?@@@@??@@@@A?@@?ABABAAABAAAA?=<<> MC:Z:151M MD:Z:66A68 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:17 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJ8??@?@>??@>@??@?>?@???@=>?@=????>?>?@??@?>?@???@???@???@???@???@???@???@???@??>@?>=@??;>??=>>AAA>?>?@??AA?@A@?@A@@@A@@@A9@?@@@@@=@@?AABABA@AAAB;@<;;B MC:Z:151M MD:Z:62A88 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:1 MQ:i:60 OQ:Z:AA-AFJJJFJJJFJJJJJFJJJJJJF?>@?6?@??>?????;??@???@???@???@;6?@???=?=?@>?>@???@??@@/>?@@@9A??>>A?@@:?@<@@@A@@@A@@@AAA@@@AA?@?AAB><>@@B?CABBABA?=<<@ MC:Z:151M MD:Z:55A95 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJJJAJJJJJJJFJJJJJJJFJJJJJJJJFJJJJJJF7JJJFJFJAFJJJFFJFJJJJFJJJJJJFJJ-FFJJJ7-<@?>?@@>;>?>1<8>>@>:>7==>??99)?>9@??>?==?&9<>@??@=????;??@???@???@>??@?>>>>??@>>@@??A??0@? MC:Z:151M MD:Z:1T50A17T11T48 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:24 MQ:i:60 OQ:Z:####################################F77A<77<<-7F7-7JFAAJJFAF<7-JF>>?@??@???@???@???@?????@??@??>@???@???@???@???@???@???@???@???@???@??@@???@??@@@@@@??@@??@@A@@A@@@A@@@A@@@A@@@A@@@A@@AA@@A@A@@@A@BABABBABBAAAB@?=<:? MC:Z:151M MD:Z:50A100 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJAJJJJJJJJJJJJJJFFJJF UQ:i:41 AS:i:146 +HT3GGCCXX160630:6:2216:3123:26695 163 1 14804720 58 26S22M1D100M3S = 14804858 289 TAGAAGGAAGGCAGGCAGGAAGGAAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACGGGTGGAAGGGAGGAAATAAGGATGGATAGAAGGAAGGAAGGAAGGAAGACAGGATGAGAC <7;>>???+?>&95;&@@?????=9?6>*65>7=*8=?<@33<@??85*35>?*8>;?8>**243658<*24<86<>2*94*38;*1/4*043:)4=88;=############################################### MC:Z:151M MD:Z:22^A2A24A13A7T7T3T30A7 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:8 MQ:i:60 OQ:Z:A<@???@?8?@???@???@???@???@???@???@???@???@?7>@???@??>@::2A@@>@?@A@@@A@@@A@@?A@?@A@@><@@??ABA@AB:=?ABB:AA@?=<0= MC:Z:151M MD:Z:22^A2A24A96 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:3 MQ:i:60 OQ:Z:AAAFFJJJJJJFJJJFFJJJJJJ7JJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJ7FJJJJFFJFJ<<-AJ77FJJAJJFJAJJJJJJJAAFJFJJJAJFJJJJJJJJJJJJFJFFJJJJ<>?@???>8?==??@?5><=>?=0>00>;>>>8=?>???@?>?@???@?>?@???@??><;=00=>@?>@=?@AAA@0?@>??@@@A@@@A@@@A@@?@>?A==?@@#<;9@ MC:Z:151M MD:Z:50A75G24 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:A?A???@???@??>@?????@??@???@??>@???>???@?>?????@???@?<>@?>?@??>@?>>@??>@=??@??>>?>9@@@=A@>/85*>?8@??A@?0=>@?@>@?@>@@BAA;A?A?A?==4>49> MC:Z:151M MD:Z:22^A2A24A31T47 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:4 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJJFJJJJJJJJJJJJJJJJFJJJJFJJJJJFJJJJJJJJJJJFFJJFJJJJFJJFAJJJAJFJJJJJFFJF?@???@???@?=?@????;@??@???@???@???@???@???@??@A6?@A@<@A@?@A@=?A@@?A@@@<>@@A@?@?@@?A@8/74>0@44@@@@0-+<0,+?;>?A11@AABA;<<@@28=AA##################### MC:Z:151M MD:Z:22^A2A24A31T47 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:4 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJFJJJJJJ>6<60?9-06?????68??<9>@>8<-@A??@=??@@A??@???@???@?>?@???@?>>@??@@??@?@?A?=== SA:Z:4,19235031,-,33M118S,27,0; MC:Z:93M4D58M MD:Z:14A7^A0A1A22A1A81 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:6 MQ:i:60 OQ:Z:#########################################################################FA<<>?>?@?=>@>=>??=>=>@>>@?==@?>>@?:=?>>>@=>>??>>@?=>??>>@?>>@?>=@?<>@?>3@?>>?>>>@?>>@?=>@?=:@?>@A?=7@?>@58??>@;@758=39>>?A?*;==:=@=;4@+;;A@<:?><7:=## MC:Z:151M MD:Z:21^A2A24A78 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:3 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJFJFJJJJJJJJJJJJJJFJJJJJJAJJJJJJJJFJJJJJJFJJJJJJJJJJJJJ>==@@@??@?@;?7@>??>???@?;?;?>?@???@???@??<@???@?<>@???>;?0>?=>>??<>)>><=05??>?@??>>>=053>>;/@.???=A@@@>A95A>A?A@@=>4>9><1A@*A>>?A1?>62==?A2?B/6@<@<;>?@?????>>>?>????>>?>>?@>>>?>>>>@>>@>???>;>>?>?@???????@>??@???@?????@??@???@:?=@???@??>??>?@?>?@???@@@@A??@@?@@A@@?498=A@<@A@@@AA>?><<# SA:Z:1,14804674,+,113M38S,54,1; MD:Z:21^A2A24A26 PG:Z:MarkDuplicates.1O RG:Z:HTJCG.5 NM:i:3 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJFJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJF=0(=>0=30<;37=4;?@03?>5)?@;30>0(1@;=?@>=??/)??;??@>??@;:1@;7?@1)?@8)?@>??@0-?@;?@@>>?@>=@@@@A?<=A? 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MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:##FAJF<7-AFA-AFFA@B?>@>?9==@:B@@@@@:?A@@@?A;@@A?@A=>@?@@?@@???@>?@@??@?@@>>@@@??@??@@???????@??@@??@@>>?@>??@>??8??@@>>>@??@??@@@>=>?@??>??@@@?@>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:#######J?@A@@@??@@??@@@>????>@???????@??>@?>>@?>@@??@?@?@??@@?@?@@?@@???@??8<>>@>@@@?@>@?=@??@@?@@???>@@@@A?@:=@@@<>>@A=@@;??/??;0+:@>A?;?BA0/:?A?>2>B18>8=? MC:Z:34S117M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJ?@4<>?>>=>>??>73?@?2*>=*>?<>@?@<@??@@084<+<:@79?@=<@@???'@@<=?@@>;,8708<8*34(*<=@=A@==A789?;7/,3*%5;+05;>=>>=;=?>??@??@@??@?@?@??@@?@?@@?@@???@??@A?@@@AA@?@?@?@@@@AA@@@@@@@A@@A@@@@A@@@A@>@A@@@;?AABAAABAABB?BBBA/AABAA=BACAB@BBA@ABBCBCBBBBB@?=97@ MC:Z:151M MD:Z:59A91 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFFJJJJJJAFFJJJJFFFJJJJJJJJJFJJJJ-FJJJJAJJFFJFJFJFJJJJJJJJJJFJJJJJJ UQ:i:41 AS:i:146 +HT3HVCCXX160630:8:1112:31040:31459 147 1 14804816 60 151M = 14804704 -263 AGAAAGGAAGAAAAGAAGAAAGGAAGACAAGAGAAAACAAAGATGGAAGAATGAATCTGACTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAA ######################################@AB>=0>?1A@?A*07/A=<@96@@=>?8@@@?<@??@@>@4@:???@(?<4?=;?<@?6??@??>@:??=@@><== MC:Z:42M16I93M MD:Z:2G7G2G10T6T3T3C18A0T91 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:9 MQ:i:60 OQ:Z:######################################FJJAA-AFFFAAA-FJAF--7-JA7J<7JJAAB?A@<8=*@A@A@@A@@A@AA@AA@@@A@@AA??A?@AA@@@@??@??@@??>????@?=@@??@@???@???@???9??@@???@??@@>?@@>??????>@?@??>???>>??@?@>=?@??@?>??@?@>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:A=:?@=:>?A6>>><:?@9-@?@>?=?@>>??>@?@????>=8>@?@3??@??@@??>>>??@>@>>@>>?@?@@@>?>@>><;>< MC:Z:151M MD:Z:0A150 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:########JFJJJFJFA-FJJFJA.7@@@7=;<:>;=50=;?=0<7.>===?>??@??@??@@>?>=;??@=<=5???9?=@@?=<@??@8>>@@>>>><=>>;;5;:== MC:Z:151M MD:Z:11C20A77 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:2 MQ:i:60 OQ:Z:###########################################JA--?@?@@?@@???@>?@@??@?@@>??@@??@??@@??@???:?=>@??@A??AA@AAA@@@@A@@@A;A?A>?>@??A2?@A@@AA@@AA@@@@=A?A@BBAAAAABABBAAAABAAAA@A><9:= MC:Z:151M MD:Z:26A124 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJFJJJJJJJJJFJFJJJJJJJJJJFJJJJJJJJJJJJJJAFJJJFJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJFJFJFFFJJJJ7FJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJA UQ:i:41 AS:i:146 +HT27VCCXX160630:8:2105:29833:14810 83 1 14804850 60 151M = 14804601 -400 ATACACAGATGGAAGAATGAATCTGTCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAG ##<>?AAA;>:AA@)@AA=A?3AA?@@*A??A?@@@?@@@???@>@@???@<:??@>:><'=@9>?@@>>>@>?@@>?@@>>>;=>??@?@>@?????>@?@>@>=?=;@@@?>????9@>@?>?=;>@?@?@>>>@>>>??@>>?>@;C? MC:Z:151M MD:Z:24A126 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:##JJJJJJ7FAJJA-JJJFFA7JJJJF-JJJJJJJJJJJJJJJJJJJJFFJFAJJFJFJF-FFJJJJJJJJJJJJJJJJFJJJFFJJJJJJJJJJJJJJJJJJJJFJFFFJJJJJJJJAJJJJJJJFJJJJJJJJJJJJJJJFJFJFFFAA UQ:i:41 AS:i:146 +HT3GGCCXX160630:7:1124:21531:65089 83 1 14804850 60 151M = 14804763 -238 ATACACAGATGGAAGAATGAATCTATCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAG ?<<>@ABABB@AAB?ABB@AA@AAA@AAA?@A=@AA?@@@@@@A?@AA@@A>@@?A?@@A?@@:>?@@>>?@>?@@>=@@????@>?@@@@?@?@?@??=?@?@>?@@??@@?????@?@@@@?A>??@@@@@???@?????@??@BA>B? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:FJFJJJJJJJJJJJFJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFFAJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3GGCCXX160630:6:2216:3123:26695 83 1 14804858 60 151M = 14804720 -289 ATGGAAGAATGAATCTGTCTAGGTGGATGGAAAAAAGGATAAATGAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCT #<6+?A*@BB8(?:?@@@@?@A8(AA?@AA@@@@?@@A79A;?@?A?>?@>??@><@@????@>?@@@@?@?@=@??@?@?=(?@@?=>@????=@?@@?@?@>;?@@?==???@?????@?:?@@=88;?AA@>@? MC:Z:26S22M1D100M3S MD:Z:16A134 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:58 OQ:Z:#JA-FF-AJJAA-7-AFJJJJJJFA-AAJJJFFAFJA-JJFJJJJJJFJJJJAAJJJJFJJJJJJJFJJFJJJJJJJJJJJJJJJJFFJJJJJJJF-JJJJ?==@1+=:8+-?>@A@@@A?@@?<<@+?<9:>?>@>?<:>>@>?@?>?@@>>>>@>?A@?@>@?@?@??@?@>@>??@???@???=@@>@>@@?@=>?@>???>==?;==??@>??@@?@>??@?@>@:@<>? 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MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJFFJJJJJJJJJJJF??@@?@@???@???@???:???@???@??@@?@@@?>??@???@?@?@?@????@?@?@??@@??@@?????@?@?@@?@??>@?@@A?@@A@@@@@A@@@AAAA@@@A@@@AAA>@@BA@A@@AABABABA;:@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJFJJJJJJJJJJJJJ7JJJJAJJFJJJJJAJJ UQ:i:0 AS:i:151 +HT3GGCCXX160630:7:2210:25936:54541 163 1 14804902 60 151M = 14805063 312 GAAAGGTTGGACGGATGGGTGGATGGCAGTTTTGGACACTTGAGACCCAATTGGATGAATGAAAAATCACAGAGGTCACTATTTTGTTTCCTTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGA <<<>A;@?@???:???@??@@???@>@@@@???@???@?@?@????>;@?@?@??@@??@@?????@?=?@@?@?@@>@AAA@@@AA@?=;A?2;A@=AAA?A@A<<@>>A@@AAB=)78=>@@A6<<;<: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFAFJFJJJJJJFJJJJJJJFJFJJJJJJJJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJFFFFFJJJJFJJJJ7JFFJ?>??@???:??@@???@??@@?@@?7>>?@???@?@?@??>>??@=@?@??@@??@@??=??@?@?@@?@?AABAABACA:@#### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFFJJJJJJJJJJJJJJJJJJJJJJFFAJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJ;7:?;?ABB@@@A?@AA?@@A????A?=:A?A?A>?@@??@@?????@;=?:@?@>>?@?@?@>>>;>>>??@>??>@?@:?>@??>@?@>??@>????@@>?@??>?>@>?>>??@>??@????@??@>@?@?>@2>>?>@?>?@:?????.?@98?@??@A/:/>/.57>;?@A@.5(0-;>@A->>8@A?;@@==81;;,*6;?A#################################### MC:Z:151M MD:Z:67A47A0A7T1T5A11T6 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:7 MQ:i:60 OQ:Z:-AAFF6;=?>@@AB@AB>@BBB@@@@A<@@AA@@A@A@A@@A@A@A;;A;=@AA@@@?=A>A?AA?4;?<@@@@@???@???>?@?>>@@@@>?@@>>?@@8?>@@@??>@????@@?@?@???@@?AA>==? 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MC:Z:14S75M62S MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:0 OQ:Z:JAJJJJJJF-JJJJJJJJFJJJJJJJFFF>A>=?=0:@72)?@@<=@*@@@>(8@@=A@?<<8819*:4-.@AA>;??@@;A<<7@A<@=@:;.7/?<7;-@<;?:8=?>@@6:?@?@?@@>@??????@?=:@????>=;= MC:Z:22S22M1D107M MD:Z:24A31A94 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:2 MQ:i:60 OQ:Z:###############FA7)-7A7<-F-FAAA-J?:9'>'?AAB@?57&9?+9?>0'@@?@?;A@AA=>25@A@AAA@@@A;@=@@A@<@AAAA>=?@???@@@???@?>@?>@@@?@?@?>>@=@?>@>>?@A@@AA@?@A@@@@@<@?>AAAA@@?A??>AAA@@@AA@@??@@@?@:@???@?@??@@@?>?@????@@?@?@?@?@@?@@?????@?@?@?@???>;;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:F-FA7<?A3?<6=1@AA>A:@<<=.?A@@=@;5?;<@>?9'3).*??8@?<=64@?'0;><7:.?@>@=@???87????@?@=@@8?/1>:== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:###################JF:@@?@?@@@@@@@@@@@@@:A@@A?@?>=>?@6<>==??>7??@>:?@?:?=??@?=>>??>=?@??@???>?=?>@??>?=@?>???>=>@>??>?=>@>??>=?><=<==@=>>>>?====??;;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:JJJFJJJJJJFFAJJJJJJF?'A:89+8193@?@=?A@??:=(1+;>?A?(7*87A@=%@>99%@A?A?5@;;@<@AAA@@??@@@??@8%?@????;@?@?@@@@?<>@??=@?@?@?@?@??;?@@?????:?@?@5?9????@??@>:?=><>< MC:Z:151M MD:Z:15T22G13T4T93 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:4 MQ:i:60 OQ:Z:######JJAA)A<>>@@??@?@???9@???@@?????@>@>@@?@???@?@@@>??@???>?@???@@@@?:>>???@@@???@??@@?@@@?@?????@?:@?A@A???:9?@4A=@A@@@A@AA@A@@8@@@A@A@?BBAAAAAAAB<>BABA9=@=<;> MC:Z:3S148M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJAFAJJJJJJJJJJFJJFJJJJJJJJJJJJJ9@AA@@BA@@@@@A?A@AA@A;<<>@AAA@=@=;?>??A@@@@AA?>???=??@@@???@@?@@@3@@?@?@?>?@?@???>@??>@????@@?@?@?@?@?>@@?????@?@?@@@????>???@???@?@?@@@=<@? MC:Z:18M5D133M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:F@@<:AA@@@A@@@@@A@@3AAAA@@AA@<>?A@?@@A@?@??@@@=@?@??9@?>>@@@@?>4@??>@@@?@?@?@?@@?@@?????@?@?@@@?????@??@???@?@@@?A@?=>? MC:Z:22S22M1D107M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:JF-A?@?;;+<@+9?;>=7=7=?@?=+>9*87=?@10//;9;/?=>@??>@7=+*9;684>@77/<&=7?@?=;+834=69=@3=<3@7<90=:=@6*53(8+05>029077180007<0<+82100984>18;197?16@>@?*4:#### MC:Z:151M MD:Z:144T6 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJ?<@A?>??>>==>>??>?@>????>=@??????>>>=>@??>>??@?>>?=>>@?:>?>@?=?>???>>>???>>=?@??>?>=>>@?>A?@>@??@?>??@@??@??>??@@?@@?A??A?@???+:=<+9):*1?6=/-$1;<:6%:4<00:->>/<+3/39<-*4,+6)2:>>40756:4><)&=@9>>'?091@:7(4###################################################################### MC:Z:151M MD:Z:20A23T20A30T1A0T2T2T6T18T14 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:10 MQ:i:60 OQ:Z:----A-FAA-A-F--JAA?????@?@>>@?@>@?@>@@@???@@???>@??>@@@@??>@?>>@@@?><@@>@??@@=<@?@>?>@???>@@@@?>>;?>>@@@A@@>?@>A@A@@@@@@A@A@A):?A@98A@?@A@?@@B@B?BAA@BAA,7-6BA2:=;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:AAAFFFJJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFFJJJJJJFFFFJJJFJJJJFJJJJFJJJFAJFJJJJJFFFAJFJJJFJJJFJJJJJJ-7AFFAAJJFAFJJJJJJJFJJJJJJJ-A-7FJ7AAA< UQ:i:0 AS:i:151 +HT3GGCCXX160630:8:2110:3346:18116 1123 1 14804957 60 151M = 14805147 341 TGAATGAAAAATCACAGAGGTCACTATATTGTTTCATTCCATAGGACAACCTATTCCTACAAATGCCTCAAACTCAACATGTCCAAAACTAAGTGATCATCATTTTTCTTAATATTTTCCTTATTCCTTACTCTTACTTCACAAGCCATAA =@=>AA?????@?@)>@>@34:@>A:@*?@@@?>?,?@>>@?=@??>@?<(A=@?)8=='>>>27=(=3;>>'=(??>;@.?75>55,44=;>:>1:;10:002<0:?>)?=>@1048)???7413/5?@@*8A1),=B######## MC:Z:151M MD:Z:27T7C86C12C15 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:4 MQ:i:60 OQ:Z:@>9;B;AA=-8?6A<6839@=;&=8>645+?<=A?@A??;:?(?@@>5AAA@@AA>5?@<9@A@@?<849?9?;>;@@?@?@??>@@?@@;?????6@?@=?6%**>@=?@=>???@@?>@????=:@@@=4@?@A>>?< MC:Z:5S22M1D124M MD:Z:18G11T83T36 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:3 MQ:i:60 OQ:Z:??>?=??=?>???=?>?>>?@?>>==?>>==@??;>>@*4>>?@??>??>@?9@@?>@??9;5@?@?>@@@@@?A@@@?A????:><>@A@AA@?@@@A@@>A@A@@@@?A?@AA@@BA8@BABAA@BAA54B>@A@AB@@>=:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:AA<>??@?@@>==/=@>=@@;?->====?@=<=?8;:=??@???#??-??;>>9??.8A=$3::?@@=@8:@???@>;@?:@>?@>@,A@<@0;?@>B@?B?AA>@A@BA3>@?3>A################## MC:Z:151M MD:Z:44T15T42A37T9 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:4 MQ:i:60 OQ:Z:AAFFFJJJFJFAF-AFF??=?@?@@@???@@????@???@@@@???@???@@@???@@?@?=AA@@A@A@?@A@A@@@A?A@@@@@@@@A?AAA@?@AA@AA@@@@@A@A?@AB@@AAABAAB@?>BAA>A@AA9>B==A@B28;7B??A2AAA@AA7A=58## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJFJJJJJJJJFJJJFJJJJFJAJJJJFJJJJJJJJJJFJFFAFFJJJJJJJJJJFAAAJFAFFFJ7AF<@@?A?>>@????@??=@??@>@?@@??>?@?=???@@@??>>@@>??@>>>@?@?>>????@@>?@?>??@@@@>@?>?@?@??@@A=<<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:#JJFJJJFFJ6@@@@A?@A@@A??@A@???@?A?@?>?@>??>@<=@???=?>>>@>>??=>@?@>?????9@>?>>>@?>>>=>@??>>>>>=>?@>=>>=>@?>=>@??@=>>>?=>=>=>=?==?>?>=====;;;; MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:JJFFFJJJJJJJJJJJFJJFJAJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJAJJJJJJJJJJJJAJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFA< UQ:i:0 AS:i:151 +HT3HVCCXX160630:5:2103:10186:53170 99 3 17077037 60 151M = 17077222 336 TATAGCAGTGGCCCGCACCTGCTTCCTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAA >>>>?A@@?@?@??.@@??@@@@???@@?????@?@???@?@@?@@6????@@???@???@??@?@?@@>@@@@?@???@@@????@A@@@A@@@@@A?@A@@@AAA@@A@@A@AAAA@A@@@A@A@@BABAAAAABAB@BABAAA?=;7> MC:Z:151M MD:Z:14C136 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:?AA@B@AAA@@A@@AA@@?;@A=??@@@;1@><>?@>??@>??5?>@@?>@?@>@>>?@@@>>>?@@???@>>>>?@>=@>>=@@?>????@??@?@=>?>@?=?=>???>>>>>@>@?@>???@>;@?B? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJFJJJJFJAJJFJJJJJA-JJFFJJJJJJJJJJJJJJJJJJJJJJJJA7FAJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJJJJJJ7JJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:2:2119:31781:24550 1107 3 17077038 60 151M = 17076462 -727 ATAGCAGTGGCCCCCACCTGCTTCCTGTCCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAAC #:6/>?<>1=?7;,<2??+=>85@?1.6,?>92@@=@=7+<><2<@8?>92@@?A=?>?8>@?@?@@=3=@??@<7?@?=;'7,<@5>?@=?==>??=;;?>@?9>>:?=?>?5@@?@???@?@??@?@>>???@?@???==?@?@@>8A? MC:Z:151M MD:Z:28T122 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:#A-7A:>3@@0+1',?@=>2??>9>:5?>+68&@>92@@=@A@A<>92+@>>>A?@8?A@?>@??;>93@@?@@<@?@???=;@;2?>?@???@???@><=;@??>@@@??@>??>?@AA;9<+A@A?=;:5@>@A9<?>A>?=>@2=@?@@=@?@???@@@>1?>???@@@?>>???-@@?@@@?@?@@@@?@???@?@??@@@>>???@?@?@?@??@??@?@BA?@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:FAFF>>>@>>@@?@??>@@???>>@>@???@?@?>@@?A?>>3@???@>?>A??@>?>@@?@@?A?@???@@@????@@???@????>@??@???@@??>@>?@?AA@A@=@=@A@A@@A@A@@@A@A@A;A@>?@BAABA??@<>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJ?>@@>>>>@><@@?@??>A@???>>@>@???@?@?>@@?@?>>@@???@>?>@??@>?>@@=@@=A?@???@@@????A@??>@????>@??@???>@??>@>?@?AA@A@@@@@=@A@@A@A@@@@@A@A?A@@?@BAABAA?@<==? MC:Z:151M MD:Z:34T116 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:A?>@@@@??=@@???>>@?@???@?@@>@@?@?>><@???@??>@??@?@?@@?@@@??????@@@????@???@A@@@@@A@@A@@@AAA@@A@?A@AAAA@A@@@A?A??@@A@@@@ABAB@BABAABA@BA>AAAB=9-<=;9< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJ>@@??>5>@=@?>>@=@?>?@?@>>?@???????>?3??8??@@?@@@@>@???@@>>???=@?:?>><=@?@>?@???:4>??@==A@@AA@?A@@@A@A??0=A3<:>@A?@@A7;>@<@?=>A@??@@??>?>@>@???@?@@?@??????@@???@??????@?8?=@?@@@@?@???@@@????@>???@???@?@??=?>?@@@??A@@@@@@@A@A@@@A@A@@A@A>@@@@A@AAA@>@AAAA@AAAB>BABBAABABA=>9;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJFJJJJJJJJJJJFJJJJJJJFFJJJJJJFJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJAJFJJJAJFJFFFFJJFJJJJJ7AAF< UQ:i:0 AS:i:151 +HT3GGCCXX160630:7:1213:5355:6126 163 3 17077060 60 151M = 17077306 397 TCCTGTTCCCACTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTACAATTGTCACGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATAT <::AA@??6>>?@0??@@@&>@@?@?>>*????@??>@??@?@?@@??@@@=@@??8?@?;?=@@=880???=?@@@=@AAAA@=%36?@AA7A%24>;@A@;,@@@############# MC:Z:151M MD:Z:97A8A44 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJAJFJF-FJJJJ-JJJJFJJJ-FJFJJJJJFJJJJJJJJJFJJJAJJJJAFJJ@=@?@:@@>@A@@?@@AA@=>>>@A??@A@@@@@@??@>??@@??=@?;??=>>>>?>@>?>>>>>=>@??>?>??>?@>?=??>>?=>?=?;>< MC:Z:61M1I89M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:JJJJFJJJFFFJJJJJJJJJJJJJJFJJJJJJFAFAJJFF@@A?>A@A@AA@?A?@>?>=?@?A>>>?@@????>>>>?@>=@>>?????9@??@?@@>@>?????>?>?@?@>>>>=@>@>>>????>?@??@?>@@?@@>@>?@??@>>>?@=@>A? MC:Z:14M1I136M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:1111:30939:56950 147 3 17077065 60 151M = 17076662 -554 TTCCCATTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTAT ########################BAAA?>=@>2,1?1@2,:AB;@=)@=@AA@?@@AA@>-A@@@>?A??A5@1+?A@;?.(A;AAAA@A@@@>>@>???7?>>??@?@???8?=>??>;8;>?8>9>@7?>6??=@???@@@:??><>= MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:########################AAJF<<?>>?>?>>???@>==??>>?@?>=>>>?=?=@@3??=?@@@?>??@?=??@???9>@??@???@@???A??A@AA?@@?>>?%=A@@A@@@@@@@A@A@A@@@>A@?A@@?BAB@ABBABAABAABAAAAB>A?A@>=:#8 MC:Z:151M MD:Z:3C88T56C1 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:3 MQ:i:60 OQ:Z:AAF#FJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ7FJJJJJJJJJJJJFJJJFFJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJ-AJJJJJJJJJFJJJJJJJJJFJJJJJJJJJFFJJJJJJJJJJJJJJJJFJFJJJJJ#J UQ:i:16 AS:i:142 +HT3HVCCXX160630:2:1206:25824:28505 163 3 17077071 60 151M = 17077385 465 CTTTTGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGAAGTGTAGAAGTTTATATATTATCCAATC =?<>?@@@@?@@?@?>?@@???@???@??@>@?@@?@<@@?@@>=@@??>??@@?;?A@@@A@A;?A??@AA9/>>??A>@?A@@A@@@A@9/?A@A?@@>@@B@@BA9A@@>8;;293,3,22?1>@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:JJJJJJFJJJFJJJJJJFJJJJA-JJJJJFFAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFAAAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:1:1117:11038:17131 99 3 17077075 60 151M = 17077480 556 TGTGCCATCTCCCATTTCTTCCTTCACACTGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGNAGTTTATATCTTATCCAATCTGGC ?=>>?@@@?@???@@???@???@??@???@@?@@@@?@???@@@???>=@???@???@?@??@???@@@??@??@?@@@@?@???@?@??@@A@@@@@?@A@A@A@@A@@A@@@A@AAAA?==?@@#?@?@@AAA@ABABBAABAA>=99= MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFFFJJJ#JJJJJJJJAFJJJJJJJJJJJA1>A?<<>?>><>==#==>?>?>?8?78<=>?>??@@;=7=5@@?@>@?>A??8==@>7?>=>@A7AA?.?@@A?A@@@??@@7<<>?A>A@@?=@@>?@@?BAB@&19;@>05:0,0..<>.AAC;>AA?:?@B@AB@A@AA@AAAA@A@?@AAA@@>?=@<<.A@@@@?@?@A???@@@>>@:>@?@?<@?@???@?@??@>??????@?@?@>@??@??@;?>@?@?@@??@?@?>>?>??@?>?>??@?:>@?@?@@?@?<>>=? MC:Z:12M1I138M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:AA>/;=>>>=@<:&9:(;:?>A;:7;->(>-477<@=>0?A@87//90:.:=/048?@8,2?4:A@;@=?=@A+;6A>18;A######################################## MC:Z:151M MD:Z:22A19A2T11A20G23A14A1G5A7C12A4 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:11 MQ:i:60 OQ:Z:AAF-AF-F@??>2ABAA@A@@=?=A@@A@@>>???A@A@A@@:?A?@A?7.<9AAAAA>A>@@??@???@@?@?@?@@??><=>@@?@??@?@=@??@?@??@@@?;;>= MC:Z:19M1I131M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:;AA??@?@?@???@?@??????>>>?????>@?>???????>>@:>@??@?@??>>>>?@??@>@,:??>@?@?>??>'???+;+8@?@@?@A?@?>@>'?@@=:@:@)>@2@6<>>@@AA9???A@A@A?><=A@@@?@???@@@>?>>?>>??@>>>?>@??@>???@@??@??@?@@@@>@???@?@??@>?>>???@?@?@=@?>@??@??>@?@@@@@@A??=?@A@@?@@AA@A@AA@:A?A@AA?A@@A@A@AA>BABA@BAB@ABB@?=;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJ??@@???@???@>@??@?>>@@@>>@?@?@@?@???@>@??@>@?????@?@???@??@??@??>@?@@@@@?@?AA?@>@@@AAAA@A@AA@?A@A@@A?@??A@A?A@?A@BAABBBA@BBB@@?=;=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJ UQ:i:0 AS:i:151 +HT27VCCXX160630:1:2113:22414:2522 147 3 17077104 60 151M = 17076763 -492 TGATGCTTGTTCATGGTTCTGAAATTTTACTTTGTTCATAACACCTCTGCTTAAAATTGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTT 99;;??;9@=B@@?ABB9A>@A5A>=@>@35<@@@=>1@@?9@<6-A@?@@@?@@=??=@?>:@@:>@>???@==;:??;:<@??>??=:*>?????>>?=?>>@>=?>???<>?7><:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:JJJFFJFFJA@?@@??@@@????@@???@???@?@??@@??@@@??@??@?@@@@?@?@@A?AA@A@A@@A@@AAA>A?A??A@@A@@@A@AAAAA@@AAA@?AA@@ABAA@B=>>A>AABABBA@)+47B;AA@B@BAAC?@A?CAABAA@==9## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:AA8<2+*A@=<<9:2???@;>?==@48'?=7;@@>@;;6?;17?:=?=/; MC:Z:151M MD:Z:13G66A0A3T47 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:4 MQ:i:60 OQ:Z:#########################################F7A7-FFA-FJFAFA7--7-F??A???@@?>>?>7?>??@?>?@?@??@???@??>?@??@?@@@@9@???@?@??@?@>>?>?@???@?@??@??@?<>??@@@:@>@?@@@@A@@@AAAA@A@AA@@A@A@AA?A@@A@A:@@@AABAABBBAA@>BAAA@>@@@@@?@?@@??@;??@9@@=@?@@?=??@;@>??>>??@>@>=??@???@@?>?>?????=??@@?@??? MC:Z:13M1I117M20S MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:JJJJAFFAJJJJ=>@A@????@@???@???@?@??@?>?@@@??@??@?@@@@?@??>@?@??@?@?????@?@?@?@??@??@???@?@@@@@?@?@@??A@@@AAAA@A@AA@@A@A?AA@A@@A@A@A??@?@??@@A@@AABA@A9?BABA>?<:<# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJFJJJJJJFJJFFJ@?AAABB;@ABAA>>AA>=A@@@AAA@1AA@A@AAAA@A@?@A@A@@?@???@=@A@@?@?@?????@???@?@@@@??@?@@??@??=@@@?@?>?@@>@?>????@>?>>??>@@@??@@@?????@?@?@@@@@>@? MC:Z:41M1I109M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:JFFJJJJJJJJAFJJJJFFJJFFJJJJJJJF-JJJJJJJJJJJJAJJJJJJFJFJJJFJJJJJJJJJJFJJJFJ@@??@@@??@?>@?@@@@?@???@?@@?@?@??@:?@@@?@?@??@??@?@<@>9?A@A@@AAA@?ABB?AAA?BAAAABAAA;BBAAB?>A@AAAA@A@;@A@A@@=@A@@@@@A?@@A?A@@@??@??9@?@@:?@?@?@@=?@???@@@@?@?@@?>@=@?@@?@>=@?@:?>>@;@???@@>>@@@>>>?>@???@@?>>>@@?@:???A>@>>? MC:Z:151M MD:Z:143C7 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AF7AFAFFFJJJJJJ?@@@@??@???@?><)3;@>=???7?>=@;45<@?4@+:A@=?4?8A@A?=A92A=?=@75=??@@9;@5.?=39(?=?=;=A@@@<>;?ABABB:6A7?28?>?######## MC:Z:151M MD:Z:142C8 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:1 MQ:i:60 OQ:Z:AA-A-JAJ=@?>@?>>?>>>;>>=>>??>@?>>>>>>?>??>@;??>>?>9>>?????>?@??=@??@<@@?@??@?:>????????@????>@>>??;?:>>@?@>@@?A@@??A<@??A?A@@@@>@@@?A@@@A=A@@@@?A8B>A?=>### MC:Z:151M MD:Z:0T138C11 PG:Z:MarkDuplicates.1O RG:Z:HTJCG.5 NM:i:2 MQ:i:60 OQ:Z:#AAFFJJJJJJJJJJJFFJJAJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJFJFJJJJJJJJFFJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJFJJJJJFJ>@*<@;@@?@@67>>??@??>>@>*@@?9?@???3>>@>?@'>:@=@??@@>@=<7>=/1<>??@>???>@>??49:<>?@?@=@>>@?A?@A@@@?A@A@@@??4>:9@@7>A@A@?A@@AAAAAB?B@?><;@ MC:Z:151M MD:Z:54A81C14 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:2 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJ-FJAFFJJAF>-A2@@?>0A;A><@@>=,01A??A?@A@?@A>?>@AA@A>AA@@A@@@A@A??3<:.7>A@A?A=8A@?@?6.@@??@@>>?@@@??@??@=/??@????@?@??@>:=# MC:Z:128M1I22M MD:Z:0A25A109C13T0 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:4 MQ:i:60 OQ:Z:###F???@???>@??@?@@@??@???@?@??@?@>??;>@?@??<@??@9?@???@?AAAAA@A@AA=?@@?@A??@@A@AA@0@AA30;>=@@ABAA?AAA################# MC:Z:151M MD:Z:134C16 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJFFJFJJJJJJJJJJJJJFJJJJJJFJFJJAFJJJJFFJJJJ@=BA>:?@@BABBBBABAAABABAAB@BAA@@AB@B@BAA@@A@@@@@@A>AAAAA?@@AA@@A@@@AAA>@@@A@??@?@@@A?@>>@?@>@?>@?@??@@@?>@@@????>@???@@??@?@@??@?@>@??@?@??@@>><>= MC:Z:56M1I94M MD:Z:134C16 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:1 MQ:i:60 OQ:Z:JJJJJJAJF<7A@?A@??>@>>@?@@?@?????@?@??@?@?????@?@?@?>??@??@??>@?@@?<@?@??@??@??@?@?@?@??@?>@?@?@@??>>@?@?@@>A@A@@@@@@?AAA@@?@?A@@?AA@@A@A@@A@BBABAAB@BAABA?@==;? MC:Z:151M MD:Z:132C18 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAA@A@AA@@A@A@AAAA@A@AA@>A:@@?A@A5?A???@=??@A?@@@@???>@?????@?@?@@=?@?@><@?@@?@??@>???@@?@@@???A><== MC:Z:151M MD:Z:127C23 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:1 MQ:i:60 OQ:Z:FFA-JFFAAF@A>ABABA@@A>A@@A@A??49@<@A@A@A@@A@@A?@;A@AAAAA@A;=A@@@@<@AAAA>+@706+;?@?:@??@;>>;*?*>5'@??9@@?????@?@@@@??@?@@?@@@@?@??@?@>?@@?@@@?@?@>@<:< MC:Z:151M MD:Z:98T27C24 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:2 MQ:i:60 OQ:Z:AJ@=3"A@@@@@A?@A@A???@@A>@@@@@@?@@?A?@=@?AA@A@>@>?@??@>>?>>???@?????@???@@>???@=@>=??@?@?>@???>@?@>?>=>?>>>@?>=?>=>>>>>?>?>??>?==???@>?>>>??@>??@?>?? MC:Z:26M1I124M MD:Z:7T113C29 PG:Z:MarkDuplicates.1O RG:Z:HTJCG.5 NM:i:2 MQ:i:60 OQ:Z:<:<>3B1??12C@>?0BABBBAB@B@AA@?A@@@AA>?=A@AA@?A??@AA@;?>A???A???@???@@:?>@@@?@??>@?@?@>?>@?@?>8??@???>?????=@=@@@???A@???>>@?>:=< MC:Z:151M MD:Z:119C31 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:AAJFF-F-<<--JF29/?AA??A2<(??@..9@@06-:(>:*A?*@@A@?>>-1@@??9891=?>9>?=.><@???<4=1=/6:;=:9=<>80?;@>?????;>;/@>::?>?@>=>/>==;?===;?=4>;7>@???@@???;@@@@?>@? MC:Z:135M16S MD:Z:24T12A80C32 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:3 MQ:i:60 OQ:Z:###########AA-7-9<>??8;;???@???A>?><@@@@?A@?=??A?@?@>8@?@>?@6?:?@@@>>>???;?>?@=?@;@??>>?@?@==?>?:=@???>?>>>?>?=>>>@<@>?=4<:@: MC:Z:41M1I109M MD:Z:79C34C30T5 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:3 MQ:i:60 OQ:Z:JJFFFA@>?>>????>@>>?>>>??>>=?>??>><>=???>@<@@=@?>@:???@?>?@??@?>@?@>@@??>>@?@=@?:@@A?@A@A@?AA@?@??=@@??A@@@A?A@@A@AA@A@@A@A@AA-<>A?4A,88@AAA<>A@>AA@>:9;> MC:Z:151M MD:Z:112C38 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJFJAFFFJJFF7JJJJJAJJJJJJJJJJJJJJJJJJJJJJJFJJFFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJ7FAJA7J-7AAJJJFFJFFFJFFFJFF UQ:i:41 AS:i:146 +HT27VCCXX160630:4:1211:20405:32267 147 3 17077161 60 151M = 17076996 -316 TGTCAAGGGTTTGTGATTAAATTCAAACTCTGCAGTGTACAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTT ;19=>A@@AAABA=A=ABAABA;;1>?A>:=A?3@A@A>.?A6@@AAAA@A@A>7>?=94A:?=>@A@?@A@@?>?*:;<1=?>;1??@?>@?><>@?>??<)@6?@@?@@@5+B@A*4=@@6@AA0;@@AA@?A:*:7A;1@-**3000?==;7<=?<>,?16?2,?489=+>8-><;6?@??@@=>7>5?@3:9?>>?>=8)@0??8;2;*=@=5=)A8=9?:>=<@5?@@6@--=? MC:Z:89M1I61M MD:Z:11G89T4C40T3 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:4 MQ:i:60 OQ:Z:F<7A<7-F@??9.=>A9A=>@@.A@<>)A@<9?>;<6@@@>?@@@=>>>?@<@?<>>0>1@=/>?=????>@?@?@??@?@@;???@??@@@@>>?? MC:Z:94M57S MD:Z:106C44 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:#######AJJJJFFJJFF>2>=A?A?:B>BBA?@@A@@@:@@@@@AAAA>?@8:@@A><@AA?<>5:@A@=@7+:/>?=@>@??<;4=?@;.><:>?>@>1@>@?@??9?@>?@@?@@@@@@?<+=?@@@?@>>>=?< MC:Z:147M1I3M MD:Z:104C46 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:1 MQ:i:70 OQ:Z:###JJFJJ<@A=>>??=@>>>@?@@=@@??9<@?=@???????>@??>?>@+??@?98<>@?=8@?=@?@??@?=?94>@@??>>@?>>>???@?@<>?;?A?@@;@>@??A??A@@@;;?@A@@>?A?@@?@@@:34A95A@>>?;@3>@A@=:;? MC:Z:4S147M MD:Z:94C35C20 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFFJJJJFJJJJJJFJFJJJJ==@@ABBBBA??BA@>B@B@A@AA@@A@A@AAAA@A@A@-@A@A@A@@@@@@?=/@@@@?@??@@@??@@@??>??@?@?@@??@?@@?@@@@?@??@?@??@@?@@@?>>@@??@??@??@@??>@??@??@???@?@???@A??<<= MC:Z:151M MD:Z:94C56 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:AAJJJJJJFFJJFAJJFAJFJJJJJJJJJJFJJJJJJJJFF-JJJJJJJJJJJJJF-JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HTJCGCCXX160615:5:1201:5883:37137 83 3 17077175 60 151M = 17076837 -489 GATTAAATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTT ?>:=?@B)?A=@@A@A>4A@?A9@A:=7?><:/0?>::?>=:86:>?7:@9=@????@?<8??=?@??>;?=?;?;9//*?@=;/?>6>5->.67>???:>>??<=9=><>>??;>>?>?=??>>?;?=8=?<95<;=? MC:Z:39S79M1I27M5S MD:Z:93C57 PG:Z:MarkDuplicates.1O RG:Z:HTJCG.5 NM:i:1 MQ:i:60 OQ:Z:J@>>=@????>@?@??@>>@?>>?????@>>>>>?>??@???>>@??=@?>@?@??@;>?>=?@??>?>@??=????@?@?>???@>@??@?@??@?>@??>>?A?@??>>?>@@?@@@@>?@@?@>?@@?A@@?AA@A?A@><<:? MC:Z:151M MD:Z:88C62 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:41 AS:i:146 +HT3HVCCXX160630:8:2112:16143:4737 83 3 17077180 60 151M = 17076692 -639 AATTCAAACTCTGCAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACA @<<=?@AABABBBBAABABBA?A@@@AAAA@@@AAA@?@A@AA?@>=A>?<@?A?@A@@>?=<@?????@?@>@@??@?@@?@@@@?@??@?@??@@?@@@???@@@??>?@>@@@?????@@@>@?>???@???@@?@?@?@>>:<= MC:Z:151M MD:Z:88C62 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:JJFJFJJFJJJJJJFFJJJJJFJJJJJJJJJFJJJFJFJFFJJFFFFJFFAJFFJJJJJJJJFJFAFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFAAA UQ:i:41 AS:i:146 +HT2V5CCXX160630:3:2113:30218:71278 147 3 17077193 60 151M = 17077053 -291 CAGTGTAGAAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGC ######################################BA@@@@@AAAA??@:@@>@?<=?A@AA@@A=*;@?@=><<>@@9:6;@=@???@<@?@??@?@@???>;>@@??@???@>@??>@=?@=?@?>@>????@@@>@@?><<= MC:Z:151M MD:Z:75C75 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:######################################JJJFAFJJJJJAJF7AJAAFAAAJJJJJJJF-AJAF<@A???@?@?@??@?>@>?>??>>>=A>?>@?=@?@?>A>@?>@@@?=??>???>@@??@?@?>@?@@?>??@+???@?>@?:<>>@?@??>>@<@?@??@?>@@@@A@@?@@?>;=?@AA@A@BB>AA?8<;> MC:Z:151M MD:Z:71C79 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJJJJFJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJFJJJ-FJJJJJJJFAJJJJJJJJJJFFJJJJJJJJJJJJJJJJFJFJJJJJJJJ??@???@?@?>@?@@?>@?@?@@>@?>@?@?@???<@??@@@??@@@?????@@@?A@@@A@@@@AAAA=A?@@@A?@AA@AAA@@@AAA@A@@A>AA>@@@A@BBBAA@=AB?>?AABB=BABAAABAB8ABBBBBCBA?@?6### MC:Z:151M MD:Z:71C79 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJFFJJJJJJJJJJJJJJJJJJJJJ?@?@@?@@@@?@@@@@@;>==?@ABBBBABAA?BABAB@AA@A@@A@@@AA@A@A@@AAA@@AAA@@@@@A@A@AA@@A?@@?@@@@?@??@?@??@@?@@@???>@@?@??@?@@@??=@?@??>@???@?@???@@??>@???@?@@?@@@@?@@@@@@:@>>=?? MC:Z:41M1I109M MD:Z:69C81 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJFFFJJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3GGCCXX160630:6:1115:17503:69818 83 3 17077201 60 151M = 17076567 -785 AAGTTTATATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCT ?<<=?A@BBABAB?@@?@@@???@@@?@?@:??@????@@@@@=@?????@????@>@7@???@?@@?@@@@?@@@@@@:>>?=?>@? MC:Z:151M MD:Z:67C83 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:60 OQ:Z:JJJJJJFJJJJJJA=>@?A?A@@A@@@@AAA@@AAA8@@@@A@A?AA@@A@AA@@A@@?@??@?@??@@?@@@???@@@?@?@@?@@@???@@@@@?@???@?@???@@?@?@???@@@@?@@@@?@@@@@@:??@??=>? MC:Z:151M MD:Z:67C83 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:FAJJJFAJ7AFJA?B@?@?<@?@?@@??>>@?@>A?>@?@??@?@?>@@@>?@?>@@?>@@??@????@?@@?@?<@>@??@?>A?@???@?@???>@?@?@@?@??AAA@@@?@A@@=@?@A@@7@>@?A??A@1?/>=@BAB?A;AA@3:9A#### MC:Z:151M MD:Z:63C87 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJFFJFJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJ:2>@>?>;@??@?<;=>>=@?@?@@??>?@;0?@@>-;>4:?/?A>;?A@AA:@A*?7A@A9*=AA@'>=@8;A@A>@BAA:A################## MC:Z:151M MD:Z:63C41T32C4T7 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:4 MQ:i:60 OQ:Z:A-89=>AAABA?2BBBA@@AA@@A@AA@AAAA@A@@@@A@@AA@AA@@@?AAA@A@@A@A@@???@?@?@?????@?@???@??@?@???@?@@?@@@>?@@@@@@:??????@@?@>?;== MC:Z:151M MD:Z:60C90 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:1 MQ:i:60 OQ:Z:AJJJJJAJJF<-JJJ?>?@?@:@?@???@?@???@@?@?@???@?@@?@@@@?@@@@@@8??????@@?@>?;== MC:Z:151M MD:Z:60C90 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:1 MQ:i:60 OQ:Z:FFAF7F7AJFAF7JJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJ7JJJJJJJJJJJJAJFFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT2V5CCXX160630:4:1205:7567:41849 147 3 17077208 60 151M = 17076961 -398 TATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTG ?89=>ABABABCBBBABAABA@ABAABABAABA@@ABBBAAAAABAAAAA@@A@AA@AAAA@A@@@@A@@AA@AA@@@@AAA@A@@A@A@@???@?@?@?@???@?@???@@?@?@???@?@@?@@@@?@@@@@@:??????@@?@>?;== MC:Z:151M MD:Z:60C90 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:1 MQ:i:60 OQ:Z:FJFJJJJJJFJJJJJJJJJJJAAJJJJJJJJJJFAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:4:2210:24079:8464 83 3 17077209 60 151M = 17077106 -254 ATCTTATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGG ?;==@AAABABABBABAABAB@A@@A@A@@AAA@@A@A@@@@@A@AAAA@@A@AA@AA@A@A@@@?@??@@?@@@???@@@?@?@@?@@@???@@@@@?@???@?@>??@@?@?@???@@@@?@@@@?@@@@@@:??????@@?@@A>?=? MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:1 MQ:i:60 OQ:Z:7JJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT2V5CCXX160630:2:1214:17706:48125 83 3 17077210 60 151M = 17077015 -346 TCTCATCCAATCTGGCCCTCACTCCTCTTCTATCCATGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGC ?<=.@@ABAA??@@@@?@@@AA@@A>?A?A:AA@@@?@?@=?@@?>@@????8;?@8>@>@@@???@?@@???????;@???:@?@=@??=:>6@????@??@@@@@:??????@@?@?A>?<=? MC:Z:151M MD:Z:3T54C92 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:2 MQ:i:60 OQ:Z:A<<-JJJJAF7FJFJF>@?>'3>@?+;@?>@>??>@@?>=?;@2=??:?)=><@=?3=@@?@@@@??>>/5.:?@@7>:@??&0;@:2=;@;AAAAA@A:AAAA;,@4'0;6?4@4@AB>BAA?7789 MC:Z:151M MD:Z:37T13C18A57G1G0T19 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:6 MQ:i:60 OQ:Z:AAFFFJFJ-AJJJ-FJJJJJJJJJJJJJJ2<@*>@??@?=:@8=@8@>?6-4(=@2;4??@?7:@A<=.@B?=@@@@@;B@B@<B><4+;+2(=B71<>;A8=BA>A@'7## MC:Z:151M MD:Z:50C100 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:1 MQ:i:60 OQ:Z:@=A???@@?@@@@?@@@@@@:??????@@?@?@?@?@@@@@?>?@>==== MC:Z:151M MD:Z:27T18C22T81 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:3 MQ:i:60 OQ:Z:#JJFF4@;>/,???A9:>?@A?@>>9@=+=@A@@@A@A@@>=::>A>@A?A>=@??=?@>@@A@A@@>@><@????????<@?<5=?@?@>?;@::?=?3??@??:>@?@=>??=>>>4=>==9>?==?7+=9=>?@>@=>>?>@>9?= MC:Z:43M1I107M MD:Z:45C105 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:FAA<<<<-AAA--AFFFA7FFFFFJFF=@@?8<>9===>????95=1.?=;:>+@>?9;>;27@< MC:Z:151M MD:Z:12T1T30C93G11 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:4 MQ:i:60 OQ:Z:###A15A8=(=3?.?>?>7>><;=7?=27?>==??;+.29=8>+158>>37>=+79>?(61:+?<<01<2<@@;;A?@@A>.29%:.6&/=?1>>%1:(>=<=43.,2880,5,28=AAA;30:/+8-/9-=@%449B+4/4<8: MC:Z:151M MD:Z:40C19G90 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:2 MQ:i:60 OQ:Z:AA-FFFAFAF-??>A@@>>???@>>>@@????@@????@?@>>@??>?@??@?????@@@?@??@?@@@?>?@?@@@?@???@?@>??@@>??@???@?@??@@AA@@AA@@A:???>>@A?>A??@A?AAAAA@@@A=AABBBBCAABAA>AAA@>;;? MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJAFJJFFJFFJJJJJJJJJJJJAFFJJJJFJJJJ?5@AAAA@?A?BBA;@>BA@>@AB>A?@A@A??A@@A@A?@@A?A@?@???@@@?@>@@AA>@?>@?@?@=??@@>??@?>?@?@@?@@@??@@;@@?:>>>>>??@>@=?<><>????>=>??>?8??>?>>@=@?=>??<>:;= MC:Z:151M MD:Z:28C122 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:###AFA7JJJJJFFJAJJJAFFJJFAJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFFJJJJFJJFJJJJJJFFAAA UQ:i:41 AS:i:146 +HT27VCCXX160630:5:2107:14265:29824 83 3 17077246 60 151M = 17076896 -501 TGTTTCCTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACA @;;?A@A?>A@@A@A@@@A@A>@??@>?>?>>=??@?@??>>?@?@=??@?>??@=??@=@??@?@?>@@?@@?:>=>>??@@>@>?>@>>?@?@???@???>:??@??@?@@>??@>>>@>?=@@A? MC:Z:20M1I130M MD:Z:22C128 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJFFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:1:2121:8339:62558 147 3 17077252 60 151M = 17077112 -291 CTTACATTCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAG <7:<>9@ABABB<2?AB>B@2B@>??BBAA@B?AABBBABA@@??@AA>7A@@@A@A@@@A@A@@@AA@A@A@@@A@AA@@@???@??@??@@???@?@???@?@???>@?@?@????>?@@?@??>??@??>A=?';@>@@?@@@@?@@?:???;?>:@?@?@?@@?@A@A???A@@A@AA@@@?A@3A@@AA@@@>7<>A@@BA@<:=## MC:Z:151M MD:Z:14C136 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJJJJ7FJJJJFJJJJJJJJJJJ=@@@?@>?@?@@?0>@>?>>@>?@?>?@@??>@@=?@?>@???@???@?@@@?@???@?@>??@@>@?@>??@?@@?@@@??@@@@@@9>>>>>@A@@A?@@A?AAAAA@@@A@@AAAAAA@@?@@A@BBB@@AAAABAA?A>>?@?@@?@@@@?@??@>@??@@?@>@?=?@@@?@??@?@@@???@?@@@?@??@A??=@@AA@=<@@?@A@AA@A>AA@?AAA??;@@@;>@AA@A@A@B@B@@BBAAA@A=A@BA;BAABABBAB;AA@@@@>>>@??@@@@@@??@????@@@???@??@??@@??@?@?AA>?>? MC:Z:151M MD:Z:10C140 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF7JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:37 AS:i:146 +HT3HVCCXX160630:2:2102:8065:50129 163 3 17077259 60 151M = 17077391 283 TCTCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCT =;?=@@?@@@@?@@?@?@??<:?@>@???@@@?@??@?@@@???@?@@@?A??>@?@A>@AA@A@A@>>@@/>AAA:4)>>BBAA?A;@@BBBABAABA@?A9<@BAAAB/0<:@,A/838;1><8## MC:Z:151M MD:Z:9C141 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:A<=A@@@@?@A@?@???@?@>??@@>??@???@?@@?@@@>?@@?@@?:>>>>??@?>@>@>@>>@@?@???@??@?@@?@??@?@@>?@@>??@>????@A>?@?@>?@??=?=? MC:Z:151M MD:Z:8C142 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT27VCCXX160630:7:2122:14296:53469 163 3 17077261 60 151M = 17077627 517 TCTAATATGAGTTGAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTT <;?;>@@?@>@??@?@??@?=@?@?>>??>?@?>@??@@?>??>@@??@?==@???:>=@?@>@>?>@>@@?@@<@?@@@A?A;@?@@?>AA@A?@@A@@AAAA???A@@>A@AAA@?A@BA@A?A=@A=??<=:=@?3<= MC:Z:151M MD:Z:7C143 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJJJJJFJJJJJJJJJJJJJJJJJAJJJJJJJJJJFJJJJJFJJJAFJJJJFJAJJJJJJJJJJJJJJJAJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJFJJAFAFFFFFA-@ABABA@@@A?@AB@AAA@@@@AA@A@@A@AAA@@@A@AA@????@A@A?@@@@>@?@???@?@@?@@9@?@@@@@@:>>>???@@?@?@?@>@@@@@???@??@@@@@<>?@?@@?@@@???=??@??@@??@?@?@@?@A@===? MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ???@@?@??@?@@@???@?@?@>?=?*==@??>@?=@0@?=;@'=36=2?@8@;@@@@:???3?8@????@?@><;?<=;;?@8.>=??AA@;?@@>2(=>>1:@?@>;6=<;1//5<7=20>A@@?=5@: MC:Z:151M MD:Z:2C43C71A16A12A2 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:5 MQ:i:60 OQ:Z:-A<@?@?>>@>?>?>>@>?????>>>@???????@>@?>>@@=?>@?>>@>@??@=@?>?@?@@>:??>??>@@?@?@?@??A@?@=>=@>>@?@A@A>1A@AA@@?AA@@A=@@??AAA@<<: MC:Z:151M MD:Z:2C148 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ?<@@?:1:<5<56??;3<%4<7?";<@@<9;?:.>@>-@;<&2<+(0/*;95:5@*/08;5''33=%45>@/';*==.54@@?5@?################################################# MC:Z:29S122M MD:Z:0C79T27T42 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:3 MQ:i:60 OQ:Z:-AAF@@@?>?@@@?@??@?@@@???@?@@@?????@?@@?>@@?@>@??>@?>@>>@@@>@@@>;=9??=@?<@@@@@@@@@A>AA>@><99>A>AAAA@?@@AAA:AAA@@AA@A@@??<:9>BAAAA?A?:8;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFJAJJJJJJJJJJJJJJJJJJJJFJFFJFJJJJJF?@BB>BBBAAABBBABABA@AAA@>@AAAAA@?@@@A?A@@@AA@A@A@@@AAA@@AAAA?@@@@@@:??????@@?@?@?@?@@@@@@??@??@@@@@@????@@?@@@???@??@?@@@??@?@?@@?@@@????@@?@@A?7=? MC:Z:128M1I22M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJAJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:5:1203:15148:62540 147 3 17077274 60 151M = 17077132 -293 GAGGTGCCTAGAAAGCTTAACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCAT ?:935'=>AAA?=BAB@AAA@A@@@A@A>@>A@?1>?:=?@?@@@A@A?@@A@AA@;>???4?A=>@>@>@>?@@?@??????>>>@>@>?@?@@>???><>@>=???@@>>@??>?@=@>@====>??@@@84=>@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:JJJ<7-AAJFJF?;?=?@@@???@@@?@>>=?@@@???@>@???@?>>@?@=?;@??@>???>@;;@??@@@1?@@@@@:????>>@@?@?@?@,8=@1@>>>=??AA@>AA@?A@AA@5A@>?2@>@A@?1/@@@>@@=A@AABAAAAB@7>AA=;@><=> MC:Z:151M MD:Z:120A30 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:1 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJFAJJJFJJJJJJJJJJFFJJJJJJJJFJFJFJJJJJJJJFAJJJJJJ7JJJJJJJJJJFJJJJJJJJFJ-AFJ7JJJJFJJJJJAJJJJJJJJJ@>?>==>><=@9@?@>??6<82<>@=;?>@?'>:>>?;@@=????@??)@=A??>7=9@30>@@@??@?@1/:@9>;@=?@??4<1>==?1;@<.=>?@?>:;(3'3=@>?@?@@@*..=9?=?9@=<==>@-:00;?;:>?@?@8@@)/;@??@@@8@88@??-83/4;@=A.<8;/144<:37;*=>*9=7;'@@1:/>9>:########################################### MC:Z:151M MD:Z:2T9T66C2A2T15T8T7T17T4A8T0 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:11 MQ:i:60 OQ:Z:A--><==1@=???AA17128>?@@=?A?@>AA=A@@>@@?>A???AAA@A???A@;@:;@?@A@@A?@?>;:>@@@?=?@>?>@>@@@>?@?@@?@@@???@??@?>@@?>??@=@@?@@@????>@>@?@@:@@@@??@?@???@?@?>:>? MC:Z:126M25S MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:A>=@@@@@???@?@@@?@???@?@???@@?@?@???@?@@?@@@@>@@@@@@:??????@@?@?@?@?@@@@@???@??@@@@@@?@A@AA@AA@@@?A@@A@@AA@@A@A@?A@AAA@@@@AA@A@BB=:A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJFJJJJJFFJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT27VCCXX160630:4:1220:24424:32654 99 3 17077292 60 151M = 17077442 301 AACAATATTTTACATGATTTCAAGTCCTGGCCTTCCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAA ?=;=>A@@???@?@@>?@???@?@??>@@?@>@??>@?@??@>?=8@@=@@@:<>>3=>@??@?@?@?@@@@=?=>@??@@@@@@?>@?@@?6?9@?@A@@A88A?>>=@9:1?:@>A@@@@A@@A@AA9>>@BAAB>A:??>A?;@;<:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJ???>?@?@@@?>???@?@???@@?@?@???@?@@?@@@@?@?@@@>:???>@?A>@:@6.36A<;8/=:@;?@AAAAAA@@A@A4=;@A@?@@@=<:?A@@>B@@7@=>BBBA=??0@,?2,*$*3>?AA@2=@B>CA@AB15<46? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:A-AFFFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJFJAJ<-7AJ9@>>>>>>>?<>?>>==>>>=??=>>@??===???>?82>@@8>@?9>>???>?@???@?@??<@>?>>>>9<@8??>@?>@?@@?;?@@????>?>>@A=@@0?:@>@A@>@@@@;@@=?>@;@6;>@@A=B@@@BAAAB@?>;9:> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAFAFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJ<@??@?@@@?@???@?@@>>@@?@>@??>@?@@?<@@;>@@@@>@:???>?>@@@@@@@@?@@@@@?>>@<<>9?AA@@?A@A>A<>>A@@>A?@@:2=<;?*??(>;=?A37B9=<@?<>@1;446=;> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAAAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJFFAAFJJJJJJJJFJFFFJJJFJFJJF7FA@@??>@??>@>@@?@@@?>@@?@@?:?????>@??@?@?@?>@@?@>>>@??@?@@?@?>@?@@??@@???@????>@@??@?@??@@@?A@@@@@A@A@A@;@AAA@@A@A@@@A@@@@@@BA@BA@?><A?4,<<8,3=:;<..?6<@@:7%157;7;-:A748;938/:(8>4*=+*>'@@;*8-1?<70>=,9*<3>;@>@@@??3@7??<*=>;?>;<3;=*>??<>71-&8=@=89: MC:Z:9M1I141M MD:Z:77C4T5T54T7 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:4 MQ:i:60 OQ:Z:JJF77-7-JFFAF<<)AA=@.?=8=3;=8@@??>@?:/:;??????>;:@??@?:>????>@@>@?=?@??:@5>7>5?=>@>?@?@==@?@@??@@2??@>>?>>?A??=>@???>@?@@???????>A5:@>AA??>>7>:;A@@@A@?>?:A=?><><;# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:??>8@?@???@??@>@@@@?@@@@@@9>>>???@@><>@>@>@@@@A?@?>?@@@AA@A?@@@AA@A??@@?@?@A?>A>=@A@A>A:>AABA@@@?@@>A>@$@AAABAB@A;BBA@>;1A@A@B@@BBAB@BA?@AA;@AA?>=AA@A@A@A@AA@AA?>>A??;AAAAA@?>@@A@@AA?@?A??>><@@??@?@?@@?@@@??>?@@?@?@@9@@3/??@?@???@>?;@??@??@???@??=92= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:@@AAAA@AA?A@AAAAAA;???<@@AA@A@A@A?A@AAAA@@A??@@@@@@??@?@@?6@@???@??@?@@@??@?@?@@?:=@????@@?@?@@:@@@@??@?@???@???@@@@?@@???@???AB?@>=A@??<@??<@=?3=3>>@<=@>?><7???>=??@?>?@<@;6>6@@=9@>@(?=<@?@@==@9<;???<>?(>@/8>@A9A?@??@<@-=@><6@@/>########################### MC:Z:151M MD:Z:125A4T4T15 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:3 MQ:i:60 OQ:Z:AAFFFFJJFFFJJAJFF-A-FFJF7JFFFAFJJJFAJ@??>@>@@?@@@?>@@?@@?:???@?>@@@@?@?@??@@?@>=>>??@?@??@?>@??@??@@@??A????>@@@@@;@?=@?@?@?????@?@?@@:?AAA@@A@A@@@A@@@A@?A@?A@@@A@@@?A>BABAA@?=<@??>@?.>=@@@@>@@9=@@8,7>?=>>;?@@@>@?@4@@@?>>@;=?@?@@@?>==?@11>@?><@@12=?47>:-,75@A?7;+?A;A'46123;@@=>A??>4:<>;@=<1251:?>?:@;######### MC:Z:151M MD:Z:88T19A42 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJ-A?@ABAB@?AA=A@A?@AA@;?????@A@?@?@?@?@@A?@@?@A???>?>?@??@?@?>???>>=>>>????@>>?>@>?@>??@=>>=??>@>?>:??>?>>?>@=>>@=<=@??@>=?===?<=<>>?>>?==>=======>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:5:2207:31121:23126 163 3 17077322 60 127M24S = 17077641 470 CCTTCCACNTCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTGACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTGCTTTCTACAACTTTCTGGGATATGGGGTTTTTTCTCGCCT <;==>&/=#>:????4@9>???973;158@@?>?@?=:@@@@)1/5>>@8=>?:??@>)6'@?0?*/=<3;>A9=@9>;6?4>0+=2<3==A############################################## MC:Z:151M MD:Z:8A62A38T16 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:3 MQ:i:60 OQ:Z:@@@>>BAABBA@@A<@@7?8@AA?A;6?1>@AA@A@?@?@>@1=??@??@?AA?@@7->?A??@@?AA??@@?>?@>@?@>>>>???@>@?9>???>>@?@>>?@>=?@??@>?@>>?@>>>>@;?>@=>=====>>????@@95= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:#JJJJJJJAA*0+BB?B2><<@A?@@?A9=@?A@?@4;?@><8@=@>;5)A@@@:>??A@;-2>@6>0=@?>@>:??5@?8=>+=2=?=:=>@><>@.2;>7<=,#=====;=< MC:Z:151M MD:Z:18G74A47T0C8 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:4 MQ:i:60 OQ:Z:7FJJF<<77-A78=>A@@AA@B@BBBBBB;AAAAA@BBABA@AAAAABBAA?@B@@?AAAAA@?A@AA@AA@?@@A@@A@@AA@@@@@@A@@A@A?@?@@@?@?@@9@@@@??@?@???@???@@?@??@>??@???@@@@?@>?>??????>>>>>><== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:AJJJJJFFFFAJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:1121:10044:17307 99 3 17077326 60 151M = 17077753 578 CCACATCATGCCTGCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTTTATAGGGTTTTTTCCCCCCTATAA ?=?>AA?@@@@?@@@@@@:???@??@@@@@@@@?@@@@???=@??@@@@@@??@??@@@@@>??>@?@??@@@>@?@@>@@@@@?@?@AA@A@AA;AAAAA@A@AA@@A@>@AA@A@@>@@@A>;?%>@AA@@A@A@AA@=<@ MC:Z:151M MD:Z:126A24 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:AAFFAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJJJJJJJJJFJJJJJFJJFJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJ@ABAB@A>AA@AAA?@@@@@A@@AA@?@?@?@@?@@@????@>?@?@@:@@@@??@?@???@???@??@??@???@???@@@@@@???>?>??>?????@@@@?@??A?7=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:#JJJJJJFJJJJJJFJJJJJJFJFJJJJJJFJJJJFAJJJJJAJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJFJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:6:2124:8775:9589 163 3 17077339 60 151M = 17077430 242 GCAGCGGGGTCCTGTGTGTGGCAGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGA =;>>?:??????@@?@>??@?@@@@????@??@@@@@@??@?@@??@@???@?@@@?A>?<@=@=@@??AA@@@@@A@A@AA;AAAA@@AAA@@@A@@@AA@AAABA@ABAAABBBABBAAA>AAAAAAAAAA=?AB??>A??:AA?<:8# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJFFFJAJAJJFFJJJJJJFFJJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJ??,@?@@?4=8>:;>?:@>:@?>??@A;=A;A@>?@@>@A?8@A=@@AA::A@A@AAB=9=@A/A?@>A1??9AAAA+<'=B110AAAAAB8992@B?@B@>@B@ABBAB@AAA>@?A>?A?A@A@@@@@A?@?@<:?<@@>?@??>??@???@??@??>???@?;====>>8?>==>???>=?>>?>9>>@=?=>>A>>;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:JJJF7JJFJJJFJJJJJJJJFJJF?A@BBBBBB?ABAAAA>AAA9@A@AA@AAA@@@A@@A@AAA@@A@A@=A?AAA@@@@@@?@?@@:@@@@??@?@???@???@@@@?@@???@???@@@@@@>>????????????@@@@?@??@@:?@@?@>??@?@@?@>@?A;=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJJJJJFJJJJJJFJJJ?<;?=??@@@@?@??@@:????@???@9@@?@??@@?@???@??>>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:AA----JFJA---AA<7FJJJJJFJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJFJJJJJJJJJJJJJJJFJJJJJJ7JJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT2V5CCXX160630:5:1124:19898:41515 147 3 17077361 60 151M = 17077107 -405 AGCACCCAAATATGCTCCTCTGTATGTTTGTTAACAGTTGAGTAGTGCTTTTTATCAAGCGCATGTCAAGTTCTTTCTACAACTTTCTTTTATATAGGGTTTTTTCCCCCCTATAATTTGCGTAGTGGAAGATGTGGTAGTGGAAATGAAG B8:<=?BAABB@BAAA@BABAABBBAAABAAB@<A@A?@AAABA@@@@AA@A@AA9A?A@?@A@A@?@A@@?AA?A?@A???@??=@@<@@@???=?????>>>>>@>@@?@??@@9?@@>?????>?@?@?>??>?>3>>??=<>= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:@@@?@?>=?>?@@???@????>?>=<@??@<@@7@@@@@????@@?@?@@:@9>@@?@?@@??@???@A?@@>A@??A@?@AA7A8A@@A@@@@@@?????AAAA@?@@@A;9===@@:@BABBBB??A=>AA<9?AA>>A?<;8< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJFJJAJJJJJJJJJJJJJJJJJJAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJAJJJJJJJJJJJJJJJJJJJJFJJFJJ7FAAFJAJJJJJJJFFJAAFJA<==?=@=@===?===?=?=?=>@/>>??>==@@@<>>@???@?=@>=>????@?;>@@=A@8A??@?A@@@?@>@>>>?A@@@@?A@A;?;AA@AA@@AA@@<=?@?@A@AA@BAA@A8@BB@==?=:9@ MC:Z:151M MD:Z:54G96 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJ-FJJJJJJJJJAJJJJJJJJJJJJJAJJFJJFJJJFAFJJJJJJFFJFJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJFFFFFJJJJJJJJJJAAJJJAFFJJJJJ UQ:i:37 AS:i:146 +HT3HVCCXX160630:4:1107:14093:55051 99 4 57194277 60 151M = 57194572 434 GCACACACACCCACCCACACACCATTCAGAACATGTACTTTTGCCAACCTTTGGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAA 2;?=A@@>@?>>4=?=@?=?@???=6>?@>9?@>>=><@=>?@9.?>????>>4;@>>===>>=?>==>;=@@@@:=:@><>???>@@@:A@?1;=>@??@@>>A@A?:5@?@>@?@@=;*BA0<4@@BABB?2.74;4=?AAAABABABAABBAABA@@@AAA@A?A@@@AA@A@@@A@@@A@A@AA@@@@@@@A@A??@@@@@@?@@?@????@??@???@?=>?@@??@=@?@@<=@@@??>?@@????@@???@?>?@???@@?@@?@?@@??@???A>???? MC:Z:151M MD:Z:46G104 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:#A)JJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJAJJJJ1@,B;>2:0@AA??AA??>-1A4>@A@@@A<;>A1?A@?>8>?????@?@>7@?@@?@?@?>@??>=>?>@<;?<10??<>?@@?=>>4@>>8??@@>???@??@???@?@@@>=@@@>>@??>A=85=@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:F-FAA-F-F7A-<-FJFFFFFFA<--J:<;=??>>>?==?>???@>>>??@>>>@???@>=>=;>@???=??>?@??>????@>???@>?@=?>@?=?????>>>>?????>@@@6>>???????AA??>30@:<@@?@?A@??A??@??@>AA>@:;??<@?@>=<;? MC:Z:151M MD:Z:42G108 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJFJJJFJJJJJJFJ@>@>>@@??@@>?>@@@@@>@???@5>@?<>@???@@@?@@?@?????@>@@>@@@@@@>@@?@????@??@@>>@?>9>@@?@A?A>AA??AAAAAA>AA@@@@AAA@@AA@==??(1<(4<@/=?1*1.50>+?.<3/:89:6*--;/.*(.-71-5*>8-=(:>AA0<0-/-8=>9=9;######################################################################## MC:Z:151M MD:Z:10A24A6G18T59C14G6 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:6 MQ:i:60 OQ:Z:;=@@6AB9A@B?>>2@@@AAA?@@@>=?A@@A??@A?;>@>??@@>>>>>=>@<@>?@?@@>@?@??>>>>?9>>@>?>@??@@@?>>?9@???>=<>;8@>?>?>=??@@=>>?@>??>=>?>@?@>??@@9>@?@?@>?@?@><@>? MC:Z:151M MD:Z:41G109 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:JFFAJF7FF7JAJJFA-JFJJJJJJJFFFJJJJJJJJJJAJJJJFAJJJJJJFJJFJJJJJJJJJJJJJFJJJJ@@A@@@A@@@A@?@AA@@@@@@@A@A@@AAA@@@?@@?@????@??@???@????@@??@?@?@@??@@@@@???@????@@???@@??@???@??@@?@?@@??@???@??@?@@A?>>?? MC:Z:151M MD:Z:39G111 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:JJJJJAFFJJJJFJJJJJJJJJFJJFJJFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:7:2218:16549:10574 163 4 57194300 60 147M4S = 57194492 343 ATTCAGAACATGTACTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCTTTTCTTCAGTAATGGTGAAAGGATCATATCTATCTAAATGTA =2<=@@?<>@@@@@>@???@>>@?=?@???@@.=@>=.><>??<0>?5@AA@?9'@A@A@@@9@=?AA)3///;>@?@?/2@:@<()?;@+@@)?##################################################### MC:Z:151M MD:Z:29G78C5A26G5 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:4 MQ:i:60 OQ:Z:A-<<:5=?ABAA;?ABAAABBABAA@A@@@A@A@AA@?@@@@@A@A@@AAAAAA?AA??@@@@A@@@???@????@@?<@?@>@=@????@@???@???@??><@?@@?@?@@??@???@??@?@@@@?@>@@@@??@@>>>? MC:Z:151M MD:Z:28G122 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:AFF-?9?8:;?;>=4@><,=?1<7>:?<-=86':,::,=87;>09-0<<:@>>,4,,>???;:??A?9?<>><@A@A?@7>@A=>9627???>,=?B@??A@?6?B7<9@############## MC:Z:151M MD:Z:35T115 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:1 MQ:i:60 OQ:Z:*5)/01*<:<60)?A0@@@=1A=<2@A?;@@>>?/@???@<<>@????@@@@@?@?<6/>>8@?@>?=@?=??@@??><@<=@??>???@@=86@@?>@?>?@???<>=?@>@@?@@@???@A?;<*= MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:0 OQ:Z:##AF??@????@@????@?@???@@?@@>?@@=>??@@>?>?@??@???@??@@>??@@>>@???@>?@?@@?@?@?@?@????@?AAA=A? MC:Z:151M MD:Z:25G125 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:1 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3GGCCXX160630:6:1208:24738:1907 99 4 57194314 60 151M = 57194586 372 CTTTTGCCAACCTTTTGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATCTGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCCAGAACACCCGTTCT ?<865?4;@878@????@@;@>>4?=;?=??=?=@6@;0,3@@?@=?>?@??:@?2@???6@>??*2=(?);>@@+6;?7>?@):=7@=/=@)7A?A:8?-5>-+++=5+92;A6A;416.=<;>A@9(;-6>'>=)9(>### MC:Z:30S100M21S MD:Z:15G59A60A9A4 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:4 MQ:i:60 OQ:Z:A----A>?;;?>A@@A><>A????@@7>??@?>???@@?A@>?@,>>??@@>???@>=@???@??@@>?@@;>>@???@>?@?@@?@?@?@?@??@?@;@?@???@@??;=>;@? MC:Z:151M MD:Z:2T12G130A4 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:3 MQ:i:60 OQ:Z:#F-FJJ7FFFJJFAJJJJAA-JJJJJJJJJJJJA7-7JJ-JF=@>@=?;?>>>4>@<@@>>>>>?=@?0:<@@@>@=?>?3??<>?:;?<7:?<@@:1@@<:==>??=(-*4=0<;)58:7=&/4>;962095<)0859?;4:BB8????@?@??@@@@@@?@@?@????@??@???@????AA@@A@A@AA??@A@AA@@AA9@@@AA@@@AA@@A@@@AA@A@@A@BAAABAAABAABABBBBABBBBBBAAABBBABABACBBB:<=>>>@???????@>>>?@??@?>=?>>????????@??>?=>>>??>?:>@>@?<>???>@??@@>?>>?@??????>@???@???@??>?@?;@>????>?????@@@@A@A9>>>@@>;A???@<:?;@A@A@=>=:> MC:Z:151M MD:Z:9G130A10 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJJJJJJJJJJJJJFJFJFJJFJJJJJFFJJJJJJJJJJJJ UQ:i:82 AS:i:141 +HT27VCCXX160630:3:2209:32116:21087 99 4 57194323 60 151M = 57194542 366 ACCTTTGGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTACTGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGC >9;@@@@?;?8;>4;?>??>@>??4?>@@??>@8=>>???@?>???>?>>==?????>4<4;=(?5:2@?>@@??>=<@?;????>@???@6;+8?;&2.7=@===<>=@;?>???@9-4@@??>9&;>A9;?>4=7;@?@<;?AA=;3:; MC:Z:4S147M MD:Z:97A53 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:AAFAFJJJFJAAB8AAAAAABAA@6AAAAAA@AA@A@@@@A@?A>@?A@??@A@@@A?@>@@?>@@@@@>?@@?@@???@@?>@???@@>@@?@?@@??@???@>>@??@@@>@@?@@@?>>?@@?@>??@>==@?@?@?>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:AJJJJJJJFFAF7JJJJAJJJJJ7JJJJJJJJJJJFFJJJJFJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJJJFJFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:4:2218:23277:68922 163 4 57194325 60 151M = 57194737 563 CTTTGGTAATGGTTTTTTGATTCTATGCACTAATTTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCATTCTCCTGAATGCAG <@=???>@?@@???????>?@??<=?@<@?@@321>?????>??>@?@?@?@@?>9@8@@??@@::79@8?@?AA@?A@@@AA@=A@A@A?@??>=@A>>?@A?AA=A=8=@5=;@ABBA?AAABA@@A?AAB28:= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAFFAFAJJJJJFJJJJFFJJJJ7FFJFJJJJ7--FJJFJJFJJJJFJFJ7?@@@@@?@??@????@@@A@BBBB@BBBBBBAAA>@A<>BAABAAABBABCAA=7BBC=?AB@>=:>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJJJAJJJJJJJJJFAFJJJFFJFJJFFJJJJFJJJJJJJJJJJJJJJJJJAFF??=>?@???=?>>@@?????>=@>??>@@??@??>=@>?=@>?=>08@AA@AA@@@A@??:@?A?>>::(:?@@@6;A@@@@4@)%><@/?A<=@@22<@?BBBA?=:@?????@?@??@@@@@@>@@?@????@??@@?>@????@@??@?@?@@?>@@@@>@?@@????@@@??@@@>A@@@@A@AAAA@AA=?A@@@A?@A@AAAA@AAAAAA@=@AAA@A@@@A@??=A>@BA@B?<@BBABA>>>?>:9> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJAJJJJJFAJJJJJJAAFJAJ<>>???@???>@>>@?@==>=??>???>?>?@>>>=@<==6?@>@>??=@@@>>>?>?;>0>>??=@@<:@>=>?@??><@0>?@@*9?;<)6A?AAA?)?>:?@:>?@AA>><@@@A@>@A?A@=+=BA22;8ABA@+@.;;7> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:AAAFFA???@?@??@@@@@@?@@?@????@??@???@????@@??@?@?@@??@@@@???@@????@A@@@AA?@A@?@AA>AA@A@AA@@A=@:=>?AAAAAAABBBAAAAAA6=AABAAA@;A:;@AACAABBAABBBBCACBBAA>=8<# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJFJJJFJJJFJJJJJJJJJJ=??4@=>@???@??@??>@??<:@@?>@1?4@@?%6>@>:>?>@????9@???<@?>?>04@@@AA@=?AA@@A79=>@;=58=AAAA@BBA:BABBB>AABA>84<:=? MC:Z:151M MD:Z:123A27 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:1 MQ:i:60 OQ:Z:AA--FJ-FAJJ-J89=>??;.:A=ABAB4?A@@@@A??A?>?A@@?A<;@@>8?@>;@@??@@@@?>?@@@@A>?>A@AA@>???=>>@???@>??>??>>>@9?>@?>?>@?@>@???@>??@?>?@???@??>@>@?=?>?>???>@=<;@= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJFJA-AJFJJJJ?=??=@>>>>?>=?>?=?=>>>??>==@?00>@=@@@9@@????@@????@?>@?>?@?>@@????@??@@@@A@@A@AA@@?A?@>@@?@@@@A@@@@?A???;@@@A@?AB@@B@ABBABABAAABABA?A@?@???@????@@??@?@?@@?>?@@@@??@@????@?>>?@@=?@???@@?@@>@?>@??>???@??@?@@@@?@@@@@@???AAA@A@@@A@@@;@@@A@@AA@?AAAAA@>A@@A@A@A@@@ABAB@BABABAABBA@@><<# MC:Z:151M MD:Z:101A49 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJAFJJJJJJJJJJJJJJFJFJJFJJJJJJJJJJ# UQ:i:41 AS:i:146 +HT2V5CCXX160630:1:2220:20090:48881 1123 4 57194359 60 151M = 57194562 354 TTTCTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCA ??>?A@?@???@????@@??@?@?@@?>?@@@@??@@????@?>>?@@=?@???@@?@@?@?>@??@???@=?@?@@@@?@@@@@@???AAA@A@@@A@@@;@@@A@@AA@@AAAAA@A@@@A@A@@@@@ABABABABAAAABBA@@><<@ MC:Z:151M MD:Z:101A49 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFFFJJJJJJJJJJJJJJJJJJJJJJJ7 UQ:i:41 AS:i:146 +HT3HVCCXX160630:5:2106:4391:39686 147 4 57194362 60 151M = 57194160 -353 CTTTGTCCAAAACATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCC =9;=>A?;=A;1A>B@AAA95==BBA?0>@19@@AAB@@@?;@>@>;>A@@@A@@A@AA?@?AAAAAA=@@8@@?A@@@A>@?7???@8?@???>@@@@?@?@?@?@?@????@?@?@?@????@@??@??@?>:;= MC:Z:151M MD:Z:98A52 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:??@@@??@?@?@@??@@@@@??@@>>??@@???@@??@?>>?@?@>?@?@@=?>???@?=@?@@@@?@@@@@@???@@@?@???@?@@AA@@A@@AA@@@AAAA@A@A?A@@?@@?@?A@A@A@A@@AABAAABBAB?AAAB:>=;## MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJFFFJFJJJJJJJJJJJJJJFFJJJJJAJJJJ7F7A## UQ:i:0 AS:i:151 +HT3GGCCXX160630:7:2107:22242:72121 83 4 57194374 60 151M = 57194135 -390 CATTTACTCTACCATATGTCTGGGAATGTTTATCCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCAT #?.7@AAAB?BABBBAB=;>,8?7?AA=9?)A@@A@@@AAAAA@:@A><@>@@@@?@A?@*@@@@???@>@?@?@@@@??:?>?@??@>??@>9@??@?@?@?@>>8>??@?@@@@@>??@@@>?@@>2<@?8@?@@@=?:A@@A? MC:Z:151M MD:Z:86A64 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:#A-7JJFJJFJJJJJFJFAA-AJ:>@@@?@@??@?@?:?>@@>=???@>???@??:>>?@@>:?0???@>;;=??>4>;>@>@??@@@@@?>??@@?@?>?=@??@?;A@<=@AAAA?=@A-@@@@<>?@@@@A?A@A?@@@A?<@@,:>>>A:>BABB<@=<:<=<>@A?@:2BBBAAABAAAABB@@@AA@@A@@@AA@:B@?@@A@@A@??A@?>>?..<@@@;@@@>??@@@?@@??@???@>??@??@@???@@@@?@?@>@???@?>??@?@?@?@???>@@??@@??@A@>>=> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:??@?@@@@???@?<=>?@@?>?>@??@???@@>???@?@@>?@??>@>?@?@@@;?@@@@@?????@@?@???@???94??????@9?@@@AA@A@A@A@?@?;??@A@@@A@@?@@?A@<>AA?ABAAAB@ABBAB>A?B>@>=<;? MC:Z:151M MD:Z:80A64C5 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJ>>>@?>??>?>=?>>8@?=?>8>>?9>??>>2>?:?8>@?@?>???@??6?9?@?5=?5@>>,:???36?AA>7:@>?@A@A@?@@A>A?>>?@:+<*@:?AA<&:6%7B?3A.=@A@@BABAA9>221:9=;:; MC:Z:151M MD:Z:72A64C13 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:2 MQ:i:60 OQ:Z:AA-F7JJJJJJJJJJJJJJJJJJJAJJJJJ7JJJAJJFJJ??0????@@?(>=??;@'/>>@?@@=.?9>=@=>=?>=.??@@@?A@=@@A?A@A0?6@07(>?7););AA@@AAAAA9+(%8/0:.=?<@>0@A?@;;?@@>@@08A<5@3>'>3AABB@B######################## MC:Z:16S135M MD:Z:7T77A54T10 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:3 MQ:i:60 OQ:Z:AAFAFFJ-FFFFFJJ-@@@A>??@AAAA@AAAAAA@??@AA?A@??A???:>??>??@;??@@@@?<@>@>@?>?=>>?>@?@???@>????@:?@@>9@???@?>?@>;@???@@>=@@>???>@@@?@>?????>?=;?> MC:Z:151M MD:Z:33C26A64C25 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:3 MQ:i:60 OQ:Z:JJJJJJJJJJJJJJFJAJJJJJJJFJJFFJJAJJJJJJJJJJJJJFFFJJFJJFFJJJJJJJJAJJJFJJJJJJAFJJJJJJFJFJJJJJJJJJJJJJJJFJFJJJJAJJJJJJJJJJAJJJFJJJFJJJJJJJJJJJJJJJJJFAFAAAA UQ:i:123 AS:i:136 +HT3HVCCXX160630:1:1206:26047:72983 83 4 57194405 60 151M = 57194318 -238 ATCCTTTCTACAGTAATGGTGAAANGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAA >9:<>=ABBABBABABA@@A@???#?@?@@AA@AAAAAA@@@AAA@A@@@A@@@;@@@A@?@@??@@@@@?@?@?@?@?@????@?@?@?@????@@??@@?@????@??@@?@@??@@@??@??????@@@?@????????@?@@??>>? MC:Z:151M MD:Z:24G30A64C30 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:3 MQ:i:60 OQ:Z:AJJAJFJJJJJJJJJJJJJJJJJJ#JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFFFAA UQ:i:84 AS:i:139 +HT27VCCXX160630:4:2109:21156:63173 147 4 57194407 60 151M = 57194187 -371 CCTTTCTACAGTAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGC <<:<;@6@BBA>ABB?ABAAAB@@BABAA@@AAAAAA?@?AAA@A@?=A?@@;@@>A@@AA=??AAAA@A@A@A?@@A>>??@?@?@?@>???@@?=@@>@@???@??@@?@@??@@@??@@?????@@@?@????????@=@?@@>?>9< MC:Z:151M MD:Z:53A64C32 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:2 MQ:i:60 OQ:Z:FFJJAF7:;2555,4AAB=08+-A)167+&>A>>.@A=6@@:@:A@@@@?>,@6@<95:@>=@='@>@>:;A:@>>???>;2@>=<>?>@?,?@911.???@,*@>??>?@@;><:.:.8?7==5>:A/?;B;2 MC:Z:64M87S MD:Z:33A4A112 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:2 MQ:i:41 OQ:Z:########F7AA7-7<<-7FFFF77--F--77--FJF<-JFF7FAAF7JFJJFAF-F7J<<<7JFFF7-JFJJA7AAJJJJJAF<-JA7FFJ@ABAB?ABAABAAABAABABAAA@AAAAAA@@@@AA@@@??A>@@;@@?A@@AA@@>AAA??@@A@@?@?@????@?@@@?@??>@@@??@@?@@>??@?@@@?@@??@@@??@@?????@@@?@????????@@@?@@??A@??=? MC:Z:151M MD:Z:50A64C35 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:2 MQ:i:60 OQ:Z:JJJJJJAJJAFJJJJJJJJJJJJJJJJJJJJJJJFJFFJJJFJFFJAJJJJJFJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:82 AS:i:141 +HT2V5CCXX160630:5:2102:8785:31969 99 4 57194418 60 151M = 57194557 290 TAATGGTGAAAGGATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGA ?>>>???@????>?@>>??@?@@?@@@???@@@?@>>>@???9???@?>@@??@@@7@?@?@?>>@?@=>?>@?@?@?@>?>?@@???@=@@??@A@@AA@AA@@AAA@@AA?@=@@A@A@A@@@@@@@AAA@ABBAAABBBAB@@>=<;? MC:Z:151M MD:Z:42A64C43 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ@@???@??@??@>@8@>@@@@??>@@:>>>==?==?:@?:?>?@@>=>@@@@=@?@>@=@?>(==<>>@=@?@?=>??@?>@:4A;@)@A:A?><*):;@@@AA?/9?>@@?>:<8BABB3=;>############# MC:Z:151M MD:Z:40A64C4T8G28A2 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:5 MQ:i:60 OQ:Z:AAAFFFJJJJJFJJFJFJ>@????@????@?@?@>==>@?@>@?>>>=%>@@>:@?>@@?>???@@?@?@?>>??@8@=>>>@>??@@??@>>>@>>@@?@>>=@??@=@A@@A@@A@@=)8A@A>AAA48=@3@=9== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJ-JJAJAJJJJJJJJJJJJAJJJJJJJJF7BBAA>B>AAB@A@A@AA@;>AB@ABBA@0A@AA@A>A?A@A@A@@@@A@AA?9A?>@>A???AA>A?A@@A??A@?@@=?A@?@?@@????8@@@?@????????@@>??=??@@@@????>>@@:?4;<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:FJFAJJFFJJFJF<77JJF@@@;?@@@@@@???@@@?@>??@???@@??@>?@@??@?>@@?@?@*?=0:?????@?@?@?@???=<9?<@@=@@;A@=@A?>A?AA=@@-?AAA@A=>-@@4?;=@B@2A@AAABBAB@@@@BB=BB9BB>@><9;> MC:Z:151M MD:Z:50T100 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:AAFFFFJ;?@A@??@6@@@???@@@?@?>?@???@@?>@??@@??@@@@>?@?@>@?@>@?=??@?@?@?@????@:<<@@?@@?;=@??@@?@A<=AA@A@AA?->?@AAA@A@@?@@@@@?@A@AA@AAABB@A@AA@BBABBAB=@B?;7;;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJAJ7JJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJFJJJJFJJJFJJFJJJJJJJJJJJJJJAFAJFJJJJFFJJJJJJJJAAJJJJJJJF-AFJJJJJJJJFFFJJJFJJJJJJFJJFJFFAJJFJJJFJJJ7FJA77AJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:5:1214:28686:52098 163 4 57194431 60 151M = 57194628 348 ATCATATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATT <>;??6@@@@>@>@?@?.<>@<>=?>?<@?3@@@@A.>@?=@A;>@@A?:?A/?A@@A@@@AA:@A??AB?BAB@?A?AAAABAAABB@ABBBAABAAAA@BAAC,?CAA@<:9>; MC:Z:151M MD:Z:29A64C56 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:2 MQ:i:60 OQ:Z:@@BBBBBBAAABBB@A@@AA@@@AA@@A@@AA@@AAAAA@A@A@A@A@A>?@@A@AA@?@>???@@??@@>@@@??@??@@?@@??@@?@?@@?????@@@?@????????@@@?@@??@@@@?@?@??@@??@>@@@@@?@A@=>? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:FJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:6:1106:16711:14828 163 4 57194436 60 151M = 57194576 291 ATCTAGCTAAAAGCAAGAACACCCGTTCTCCTGAATGCAGTGAGTAATTGGGAATCACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACAT ===@@@@@@???@@@??>??@???:>??@??@@??@@@@@?@?@?@?@?@???@@@@@@?@?=?@@@@@AA@AA@?@A@@AA@AA@@AAA@@AA@@@@@AAA@BAAA@AAAA?ABABBAABBBBABAAAABBBBBACBBCC@A@B@>=88? MC:Z:151M MD:Z:24A64C61 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJJJAFFJJJFJJJJJJJJJJJJJFFJJJJJJJAF=?,'=0500-@%&%7;(02)=@@'0;):?7?=##################################################################################################################### MC:Z:5S146M MD:Z:15C2T0C5A11A11C0A2G4T4G2C9C0C3C12A11T5G5A25T3C2 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:20 MQ:i:60 OQ:Z:AAFF--<-7--7F---7<--7-FJJ--<-AJ>==??AA>AAAA>B?+ABB@A>BBA?@A=?8@@??A??@@A@A@A@??@@?A?@@AA?AA>:@@@>;A@@@?=@@?@?@@???7?>@@?@???<4???>>@?@@??@@@@?@=???@???@>@@?@@??@>????@@???:@@>69< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:JA;>?@???>?>>@@??@?>@@??@@@@@@@?@;@?@??????@?@?@?@?>??@???@@?@=15:6??@@@@@;>A@@@@AA;?>@@@AA:AA@?@@???8;=7@?:9?AAAA==@??AA+9A@AA@A=@?><@A(<4>=@1>:;=6:## MC:Z:151M MD:Z:136A14 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJFJJJJJJJJJJJJJJJJJJJJJJJ//0A;>B=<'B5;@@?>>>;@@@A>6>A@AA@AA>??@>>@@?@@-?>/>@?>>??@>?;>????????@?>?@@>=?@@@=@?>@??@@>>>:=>=???@?@8?>?? MC:Z:144M7S MD:Z:9A2C0A137 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:##############FFJAFF77--J???@??@@???=@1@@@?@@>?@=>?;0/9>9AA=@@0?<@9916?>>>@@=A@@@AAAABB?&8?BBABAA?3@?A3@3<00@0;?@6?####### MC:Z:151M MD:Z:117A33 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:1 MQ:i:60 OQ:Z:A--FFJJJ@=;;<8?5<'*22*B0?<*A>.-716+>704(>;??4=@A???A>???=8@@@@;?>??>=<:9@?@@??@?@@=??<;>??<=@><5????<@?>?@>@?><<*;2?94?2?@=@=>>=>:??@>@<>89= MC:Z:151M MD:Z:59C91 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:AJ7AAFF<7AF<7-----J7FJFJJFJJFFFFAJFFF-JF777-7-A7-7-JFJJ7AJJJJJJJJJJF7FJJAFJJJJFAA<7JJJJJFJJJJJJFAFJFJFFAJF7JFFJFJJJJJJJJJFF-F-JJ<:>>@ABAB@?AABABAB@A?@@AAA@@AA?@A@@?A@@AA?A?@?AAA?@6A>@???@@@?@>?>?????@?@?@@??@?@@>?????@@>?@>?@?@@??@@????@@???;???:?@?@@>@>?@??@@?@>@>@>>>?@?A?3:A>A?B@B@<:=B?:A?A3A??>>?;=?A@AA@@A=@>9AA:=@<819<@@@@@>>A=>21?AAAA?<>@??@???@>@@@@@=?@@?@??@@@@?@?7:.>@??@@??@@?5?@@?;?< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:JJJFFJFJFJJJJF7>A@A@@=1AA<4>*9?81=?A?=A@?@?@@@?><.+@9&?>>>===???@??5@=??@?@9>;?;??8@?>@=>>;>?7?>>?==@2?@1?=>><590???>=>?=8?@>@?@@=<<> MC:Z:151M MD:Z:42T108 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:1 MQ:i:60 OQ:Z:JJFJJJJJJJA-JFF7A-AJA-?@A@AABBB?>AA?=A@@@A@;AA?A@@@A@@??@A>>>>?A@@?@>>>>;???@?@?@???@?@@>?????@@??@>?@?@@??@@>?@>@@>=>>?@?:????@>@>>@>?????>?=?===???@@>>?@>??@?@?A?=@<@? MC:Z:151M MD:Z:36C114 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:FFJFFJJJJJFJJJFJJJFJFJFFF7JJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:8:1109:6674:21350 83 4 57194491 60 151M = 57194277 -365 CACAAGGAACATTCTGGCACCCAACTGTGCCCATCTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTT A;==A@AAABBAABBABBAAAA@@AA@AA@@AA@A@AA@@@@@AAA@A?@?@@???A?A@@@??@@@@?@?>??@???@?@@?@@??@@??@?@@????@??:@@?@@?@?>????@@@?@?????@>?@??>@@???@?@@???A@==>= MC:Z:137M14S MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:JJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:7:2218:16549:10574 83 4 57194492 60 151M = 57194300 -343 ACAAGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTA A;;>?@ABBAAABBABB?AABABBA@AA@@AAA@@?A8@@@@AAA@A>????@@@AAA@AA@@AA@@@A@@??@@??@?@@@@@??@@>?@@@@????>@?:@@@@@?@??@??@@@@?@?@???@??@@??@@???@?@@@??@@??>?? MC:Z:147M4S MD:Z:33C117 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:JJJJJJFJJFFAJJJJJFJJJJJJJJJJJJJJJJJAF?=@@??@@??@>>>@?>@@?@?><>@@???@?????@@@>@?????>>>@>@?@???@?@@???;<>@@??@??@>;@?>@@??@>@@???@??>;@A?A@@=@>A@@AA?A@A@A=@@98?AA@@@AAA@BAB:?@=BA@A?=<<> MC:Z:151M MD:Z:30C120 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:1 MQ:i:60 OQ:Z:AAAFFFJJJJJJFJJJJJJJJJJJFJJFFJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFFJJJFFJJFJJJFJJJAJJJJJJJJJJJJJJJJJJJJJJJJJFJFFFJJJJJJJJJAFFAAJJJJJJFJJJJJJAJJFFJJJJJJJF UQ:i:41 AS:i:146 +HT3HVCCXX160630:5:1117:5690:4702 99 4 57194495 60 151M = 57195011 647 AGGAACATTCTGGCACCCAACTGTGCCCATGTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATGGTGGGGGGCCCTGTTATTCCAATGCCCTCCTTAAGG ?=<>??>?>?@<<=@599>>?@<=/<:>@<+0)=?7?*9@=?5?6>>@>?*>8>())9<0.8*4:=@9;?><.>>;>A<>.?.@(8396;<>?)0?.4./64<@)314<)9*2+09=@?@A<21,*7?A,?A22<=@ MC:Z:20S131M MD:Z:30C83A3T19A12 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:4 MQ:i:60 OQ:Z:AAFFFF@@@@??@@?@@?????>@@>@@?????@?@@<>?>>@@@?@????????@?@?@@>?@@@@?@????@@????@@?@@??@@??@??A@?@?@?@;@A?AA@A@@.@@@@A@@AA@@AAA*3C>B/6>ACAAA?><<> MC:Z:151M MD:Z:109T6T16C17 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:3 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFFJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJF7>:8,@=(=5>>9?>>9A@AA;;A?<'9)4'&:,7A=*9A@<3**6;=8993AA@??;>954@<=@@@@?<;;8<=0=:>>?=>7>><8**60=7@>;><><=>>@?:*55:>:1*;<9?<:8+7;5=@0=;+?9+67>>@8< MC:Z:151M MD:Z:30C4T1T113 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:3 MQ:i:60 OQ:Z:###FFA7<)FF-F7;@@>?@.(<;.4=5)57?<'>9?4@=AA>);5>::=?>@/><=@@>A@==?>?@>@?==.<;A).(>AB@A@5??<>;>@##################################### MC:Z:151M MD:Z:114G3G6T0G10A13 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:5 MQ:i:60 OQ:Z:AAAFAJJJJJAJF<-FJA-7F7F--AFFAJF-J-J7JAJF--@A?00@<=>@>0>A@@@AA@@@@@?>A?A@@@??@@@;)51A?@@AAA@@A@@?=A@>8??@@@@@??@>??@>>@??>??@?:@@>@@?@??@??@@@@?@?@???=??@@??@@???@?;?3??@??@?@@A>>?? MC:Z:129M22S MD:Z:24C3C22A99 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:3 MQ:i:60 OQ:Z:######AF7<<>>>>>@?>?>=>=???????????@?@???????=>>=>@?@@>>????>?>=>>@@?>@??@>@??>@@?@A?>?@@@@;?A??A@@??=???=?A>@@A?@@@??A@?@@@@@?A?@@?@@BA@BA<@>AA@::>>?<9=? MC:Z:151M MD:Z:19C131 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFJJJJJJFJJJJJFFJJFJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJAJJJA7FAJJJFJ UQ:i:41 AS:i:146 +HT3HVCCXX160630:6:1105:29904:31142 83 4 57194506 60 151M = 57194256 -401 GGCACCCAACTGTGCCCATCTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGC @<<>7@BA=<4'@'A@@@>BAAB@@?@@AA?@A@@?9>@@@A??@?A@@AAA@?@=?@@A@??@?@??@@??@@??@?@@????@??:@@?@@?@??@??@?@@?@?@>??@??@@??@@???>??@>@>@?<> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:JAJ<7JJF<<))<)JJFA@B@=A:=4,8?>665664,,)=9-1A@AA9?AA>9@=@A@@A>@@@;;4><8:@<><@A=>>493+1>3&%@@>@:*&'>*?@@@::;:9&&.;=?@*??@>???@?>@=??>?=<<)>4:21->@?@?@BBB?A??A>AAABBB@A@@@@A;@@A@A@AA@@AAAA@A@@@?A@@@??@A?AA??@@??@?@@????@>?:@@?@@????@??@@@@?@?@???@??@@??@@=>;@??@??;@?;@?@????>@?@?@??@@@@??@@@=7<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:7JAJJJJFFAJAAFAJJJJJJJFJJJJFAJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJFJJFJJJJJJFJJJJJJJJJJJJJJJJFFAAA UQ:i:0 AS:i:151 +HT27VCCXX160630:3:2220:6411:12033 163 4 57194518 60 151M = 57195046 679 TGCCCATCTTAGTTTTCATGAGTTTTCCCCACTCTGAAGCTGTAACCCAGAAGGCACATCCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGT =>8<<;>>@?>?>>>?>>=?>==>><>?=??*<==>??==@???=??>>?8=<*:*09>;?>>>8?==?=;@>61/8=?9?;6/?*;>?:7@@??;?/58):;(;<;39;A?78A=?9;<;><>*;;+=?@0-9=;,9= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFFJJFJJJJFJJJJJJJJ7FJJJJJJFJJJFF-FFJJJJJJJJJJJJJJJJJJJFJJJ7AF-F--7FAJJJJFJFJJAAA@:A=;>AAA?BABA@@AAA@9=?<@@AA@@A;AA@AA>@?A=@A?AA@@@@A<@;AA@@@;@><@??@>@@???@>>>@??@@??@@<7?@?@@=??@7?@?@?@>??@@@?@??@@@@??@=@??@@??@<<=<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:?@?A@@>>@=@@@>@@>@A@@AAAA@@@@?*AA@?@<<?@>>8@@?@@>@??@??@>;??@>???>@><>@??@@??>>?@)?=>>>=@>>>;>>?@>@????@@>???@??=?>793;@=3/A=??=2??799>@@?@>?@??@@@@;@?@>;;@=<@=??@?=??>?@@<=????@?=?5;???@@?==?@@@??8@2@@??@;@@???AA;;=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:JJJJFFAFJAA7-JFFA-FAJJJJJJJJJJJJF?@?>>>3??<@>?<@7@@<<@=*>?@209=?:<>??@?*:?@A@>8*.,6><=@AA;A:?>?<:->(9>;@%<;-1-10,&+11=<;726=:A?:>><-5=7A>0<8# MC:Z:151M MD:Z:101T12A32 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:2 MQ:i:60 OQ:Z:A-AFFJJJJ7JFFJFJFJAJJFFJJFJFJF-FJJ7?@?@?@@??@@@@@@???>@@>???@@??=??@@?5?<@=????@>?;?9;AAA>@0?7<@:AAAA=A@@?A@@=AA?AA@@@A?>?@@@@6?A9@@B@@@B=9BBA2;5?B=?@=@''3,2>85AA(<=:9? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:0 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJJJJJJJJJFFJAFFJJJJFAJJJJJ7AAJFJFJJJFJJF7AJJJFJ-F7AF;.**+,4?><<2<9<7(00&,+@9++<87<;<9,)*=<402%-1>>6*)+,'>=<>7;-:,,-26*==9.@;.;= MC:Z:151M MD:Z:32C8A7A4A6A3A1A0G5G0G2C4A4A2A14A12G0G0C1C13G9 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:20 MQ:i:60 OQ:Z:################################################J&/.@.@@@>0;=<1=01>??88@5:40?@85:9@?>9=8>097)@@@A@?<3>)3>-=182??@=><:;0?=?>@==>=20@??753:7<+>@?1>97<:2?>@=&*=>>?==>>??@>>,>@= MC:Z:151M MD:Z:16A64T51G17 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:3 MQ:i:60 OQ:Z:######JF@@@BBAABABB@??=??=AABAA@A?A1AA@;AB@BBABA@??@AAAA@A@A@@:A??@>@@AA@??A?A>@?>A>?A?@?@??@>@@?@??@@@@??@?@>>@@??@8@>?>6=@???>>@@?>>??@???>??>??>?>>><== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJFJJJJJJJJJJFF<>?>@?@@??@>?@??@??@@>?@?@???>?@?=8@@?@?>?>?@>?@??@?@?@>>>@???@??@@??>@?@@???@??@>@?@>>??@@@@?@AAAA@?A>A;?AA@?@?AA@@@AA:?@@@AA@=@AAA?ABBAB1<:>BA@<=;## MC:Z:151M MD:Z:139T11 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJFJJJJJJJJJJJJJFJFJJJJJJJJJJJJJJAJFJJJJJFJJJJAFFFJJ-<19*<2?1????4=;;<@6?@?@?:@>>A?@<>?5(;4>???@@>>?:>>?@>;;;>=@=?@<:>?>??@??>>??????>=>=??>?@>:>=??>9>????=<==>>==<>>?>=>==?>>=>???;= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:##AAAAA@9BB@>?,6@:89?@AA@@>>69@;AA@?8@A?@A=+AAAA@A@@8;?4@@A@??@=56>??@@@??@???=@>=;=???@?=??@@?@7?@>@??@@??@>@@???>@;>????@???@?@??@?@@?@@?@??@@A@@:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:0 MQ:i:60 OQ:Z:JJAFFJFJJ;<:>>?B>BABBABBAAB@>@A@?A@A?@;>?;AA>AA@A@@A@@AA@A?A@@??@@@@@@??@@???@>@@=?==??@?@?@???@@@?@??@@@@??@?@??@@??@?????>@@????>@@??>@???>@?@@?@@?@??@@?=?== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:*ABAA@:AAABAA<.;@A?;?@A@@@@@AA??@??@A@@??@?@??@@??@?@?>@@>>??>?>>>==#=>>>?>>?>>?A><;< MC:Z:151M MD:Z:18T115T15A0 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:7FFJJFAAJJJJJJFFFA-JJJFA7JJJJJJJJJAJAJJJJFFJJFFJJJJAJJJJJJJJJJJJJJFF-AA-AJJJAFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJAJJJJJJFJJJJJAFJJJJJJJJJ#JJJJJJJJJJJFFFAA UQ:i:46 AS:i:143 +HT2V5CCXX160630:1:2220:20090:48881 1171 4 57194562 60 151M = 57194359 -354 ACCCAGAAGGCACATCCATTCACATTTGTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGAACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACC ?<8;@@?B++81+10.8.A2A7=&//41&,0=B<=8@B@2>;/152929?<)>72911=8-864,A>>5>.@=>=?@@;.?413/%?>:;=:?>@@?>>?>?>>>=7>=>>>?>>?>??<=1;< MC:Z:151M MD:Z:27T55G66A0 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:3 MQ:i:60 OQ:Z:??@/=@???@??????@69?8=??@>-;,4==:@;AA@@@>@@?>>?@@3@@AB:9<@4:@A@A;;55@>3A109>@A;:@A###################### MC:Z:151M MD:Z:136G12T1 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJ-FJFJJJFJJFJFJ7FJJJJJJJJJJJFAJ7AJJJF-A-7AFAAJJJJ==<>A>>AB>@;A@A@>?3;8A@@AAAA?>?A3??A>><=?=A==@@A??;8@?;**<+@7A;4;?>@>=@8?@@>?@:68?=?@@:>?><@@?>>?<:>>>@;7<@238<< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:A<7)AJJJJJAFFJFFAAAAJFFJJAJJJFJFFJ7FAJJJJJJJJFJJBAAAABBA@?@A:@3@7>AA@A@@A@@AAAA@A@@@@@A@?AA?@AA@@@A@@@=??@??@?@>=???@@@?@??@@@@??@?@??@@??@??@???@@?????@@???@?@??@?@@?@@?@??@???@??@@?>>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:0 MQ:i:60 OQ:Z:###F<=?A@@@??@@??@?@@????@??:@@?@@@@??@??@@@@@@@@???@?=@@@?@@???@?@@???@??@?=?????@@AAA??>AAA@@A>A@@@A??A@A>@@@AA@@@@@=A@?@A@@@>A@BBBBBBBAABA@@AAAABA?=<;? MC:Z:151M MD:Z:143A7 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJAJFJFJJJJJJJJFJJJJJJFJJJFJFFJJJ>8=2=AAA@CA>1A@A>AAA@@@AA@A@?AAAA@?@?@??A@??@?@@???@@?????@@???@???>@?@@???>?>=>=#=>=>?>?>>?@A>==< MC:Z:151M MD:Z:134A16 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:F>>?>=>>>?>>==<9>>8?8=@;<1<6>??@<@>???>>=>@?>>????9?>>?>>>??>@;?<@?=>??@??=>=8?=??@??>'7@>>8>;@@'6@@=@>??@@@@@@??=@:9@A@/=@>9<-:=@############### MC:Z:151M MD:Z:138C0A11 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJFFAAJ:<>?@BABBBABAB@A@???@@@?@??@@@@??@?@??@@??@?@@???@??????@????@?@??@?@@>@??@??@???@?>??@>?@@@?@@?@>?> MC:Z:151M MD:Z:136A14 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:1 MQ:i:60 OQ:Z:AJJJJJJJJFFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT2V5CCXX160630:6:1221:3112:21966 83 4 57194577 60 151M = 57194117 -611 CCATTCACATTTTTACCGCACTGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGC >;:=>AABB@AA?9A@;>BA=A:A@@A?>)A>A?A@A@@@A?8?@??AA@@>@?@A>;=@>>?@==>?@@@@??@??=>@@??@=@@>9>@@?????@@?????@>?@?@?>??>@???6:>???@?@?>>@@?@?A>>?=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:JJ?A=*A9<=)6.8.9))+==<>88??>:.><7?6:?==>0??)>;;@@?><=>+>5*,===+>>,>?>???@>>@1@?@??@??>A1><=>@@A?A::A<>ABBB@B=@A@@AAAA@?=9??=A@+AA@@>@@@@@@AA@??A<;,9A@A@??@@??@>@@???@@>>??@@@???@?@?>@?@6?@@?@??@?@?@?@@?@??@@A?@?@A?@AB8@?? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:FJJJJJJFJA7JJFFJJJJJFJJJJJJJJJFF?,; MC:Z:151M MD:Z:10A25G9T4T1C8A2T8T17G7 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:9 MQ:i:60 OQ:Z:####################################################################################################################################F-J<77--7A--A-7AA-< UQ:i:18 AS:i:55 +HT3HVCCXX160630:3:2218:26768:14072 147 4 57194598 60 151M = 57194375 -374 TGTGGATTCATAGTGTGGGGCCCTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTC #84;>A@A9;0CBBABA?;*64=B@@AAA27+>@?1+?=2==A@>B;A@AAA@@@:AAA>@@A@A>?AA@?@@A@<;(6A@>8@@;@@=?@?@???>.@?@@?@?=@???@>=4>@??@@??847@?@@@@?@;@???@?<@??8@>38=< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:#F-AJF?@A@@>??@>>=6>?@@?>@@??>?>@@??>@?>@?@>@>>>@@@?@??@@@@??@>@???@??@>@=???@:>>?????:??@?@??@?=@@=??A@/7?@@?@>::A>=:?@>@1=:@0(@@@>A,2:@AA8AB9-C@##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:0 MQ:i:60 OQ:Z:-AAFFJJJJJJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJFJJJJAJJJFJFJFJJJJJJJJJFJJAFJJJ-AFFJFJF<71:;6A0:8*<1,1/2=A<2*@2>9=>@<;2*4?+>?BB@@@A>:;35?@?A;88>@@A>=<8=;;=@?>>-@??;<6/<)@@@>>09;:@>>>=@=?=>@=@=7@?@>)6?;?=<>>4?@?>?@@<05:?@?@><>= MC:Z:151M MD:Z:8T13T2A18T48T57 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:5 MQ:i:60 OQ:Z:F-AFJFFA-7-))A7A77A-77-<7---)AJ<--F-A77FF<<--7A-A>>=@@??????>?=>?>>>@?=?>>>@?>>?>@?@>=@?>???@??>>?@>?@=?@?>=????>/>=?????>????>?@??@@@>>@>>>@=>>@@??@?@>??@A>A@A9>??=@@>1??@@??@A@@?@@@AAAAA?A??A@@@A@@A@A@@AAA@A@AA@AAAA@A@ABAABABAAABBBABABBAA?=<;B MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJFJJJJJJFJAFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJF< UQ:i:0 AS:i:151 +HT3GGCCXX160630:8:2221:27559:2997 147 4 57194609 60 151M = 57194287 -473 ATTGTGGTGCCCTGTTATGCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACCATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCTCC >::;=0/9BA@>,359>27?B@=2:)??5?@>=0>3@@@<9128@AA?=@@A?7@>A=?==6%@:@?A@>;180=@@@?@?@?<@?@@4@<4*??@=??=>>?@@>>>@@=????2?@>?9.< MC:Z:151M MD:Z:1G5G10T84A47 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:4 MQ:i:60 OQ:Z:7??@@???@?@@???@??@?@?@???@@@@@??@@@@??@?@??@@A@@@A@@>@>A@@@@?AA?@@A@A@@A@AAAAAAA@@A@@@A@?@AB@@AAB@AAABABBBBABAB@AABABAAABBBAC9BBA@ABB>BBBCBABA>:7:= MC:Z:151M MD:Z:93A57 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJAJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJAJJJA7FJJAFJJ8:<>AAAA?AABBA@@?A>>?BABAAA>AAAB@AB@A@<3BAB??BA?@A@AA@??AA?@@@?@A@@@A?A@@A?AA@@??@@@?@?>??@@@@?@?@???@?@???@?>?@???>@??@>?>=??>???=<<;= MC:Z:151M MD:Z:93A57 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:1 MQ:i:60 OQ:Z:JJJJJJFFAFFJJJJJJFAFFFJFFJJFAFAJJJJJFJF<)JJJFFJFFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFFFAA UQ:i:41 AS:i:146 +HT3HVCCXX160630:2:2112:8288:19891 99 4 57194620 60 151M = 57195066 597 CTGTTATTCCAATACCCTCCTTAAGGACATGTGAAGCATTTGGCCCAGTTGGCTCCCAGGGAACATTTTAATTTAATGTAGTGAAGAAAGACAATTCTAGATCAGAGCTACAAGTTCACTTTCTGTCTCTGAGAATCTCCATCTAGGGCAG ?@>?@A@???@?@@???@??@?@?@???@@@>@??@@@@??@?@??@@@?@?@@???@@??>??@@=?=@?@>?@?;?@@@@@??A?@@A@@A@A@@AAA@A@AAA@A@@@:?@0@@?AABAABAB@ABBABB=>;9=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJAJAJAJFJJF>>>?>??>>>@??>-4,*70;;7;845?)2>5:=@(=5?>3?7;6?-???32>:'/2.=><++87>,+.?8:8*.20(:.&<5=>@############################################################ MC:Z:151M MD:Z:50C4A3A22A2A4A0A18A21A17A0 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:10 MQ:i:60 OQ:Z:A-<-FJJJJJJJJJJJJJA-<--<-FF7A<<7J->68@>*?>../;>>>2@;.>,8=,21?<=9(09<>?.?5>:1<9>;5,9',=@11=8@?13,2;@@8@>??@:?;>,/@?@13A*7>?:4,+,9@)7>9>2A:A?A@=@=51?=?A-@A,9@)C################ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:A-FAA@@@????@@???@@?@??@@@?@????@?@@@@@?@@@@??@?@@@@@:@>@@@@@@?>>@@@@@@?@????@?@@@??@@@9>@A@@A@;@A@A@@@??AA@@?A@@@@A?A@AAAAAA@AA?;@AA@@BB@@@BABBA@==;? MC:Z:151M MD:Z:88G62 PG:Z:MarkDuplicates.17 RG:Z:HT3GG.6 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ7AJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJ UQ:i:22 AS:i:146 +HT3HVCCXX160630:1:2209:7141:20682 83 5 156355129 60 151M = 156354943 -337 ATATGCTGAAACTAAAATACAACATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCA A:;=?ABAA@A=BA@AAA@??<>A@@AAAA@AAAA@@A@@@@AA;A@9@@AA????<@@@@@?@??=?@?@@@?=@@<@??@??@?:@@?@????>@@??@@????@?@??><@???@@9:?@?@?@@???@?>@@@??>>=? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJJJAFAJJFJJJJFAF@@?@@??>>@?@?2??@?>??@?@@@??/9@@>?9>?@?8@@@A?=@??=.0>?A@@@@?;@A@9@@9A=?AB@?>==> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:0 MQ:i:60 OQ:Z:AAFAFJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJFJJ7FJJJJJJJJJJJJJJFJJJJFJ<7FFJJFJJJJJJJJJ-AJJAJ7FJJJFJFJJJFJJJF-7FFJJJJJFAJFJJJJJJJJJJJJJJ7FFAFJJJJFJFFJJJJJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:2:1222:29680:35045 99 5 156355134 60 151M = 156355307 295 CTGAAACTAAAATACAAAATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTG ?@>?@@?@@???@@?@???@@?@????@?@@@@@?@@@@?@@?@@@@@:@?@@@@@@???@@@@@@?>????@?@@@??@@@@?>A?@A@;AA@A@@@@@AA@@?A@@@@A@?@@AAAAA@A;@:?.1@@A@>@@?:@ABB;BAAA@><==>>??>@>>>??>@>>==>??@?@@??@??>@@?>@?@?:?>@@>?@??><;@>@???@>?7>@?>@@?>??@@>?@?>??9?@?@?>?>>@??>?@?@?@A>@@89AA:A@@=?;@A?@@A@???A@AA@?@3A>BB@>>=?@@?@???@???????@?@@@??>@.?@>=@>?@<@@6@?>>?@@<>??@@@@>->A>?>?78AA@@?AAAA?@A>/@>:=@5A@?@@@AA?>A????>BAA@ABBA?BA@?>;2A@=08?AAABA@ABBA>?@B@B>##### MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:0 MQ:i:60 OQ:Z:A>?@8@@??@??@?@9841@@?@@?),3@@@@@@?=>???@=@@@?=?'=@??@?;@?:@@?>@9>@A?@@@@@???@AAA@<:6<>@/5A<4;?===; MC:Z:2S149M MD:Z:9C40C81A18 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:3 MQ:i:60 OQ:Z:AAF<&*6==@>=;====?>><>:@????5=0,;>-:-./.'16?;5??:&;@%=<00<5>=>@?;@??+<=@@>?@@A@?A@@@6'4?@09.4;?;6.?B@=33;*+@18=AAAB?==;9? MC:Z:151M MD:Z:8C142 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAA7F--AFJJJJFJJJJJJJAJ7JJJJJ7F--AA-7-777--7AF7FJF-FJ-=@?@@@@?@????@?@@@@@?@@@@>>@??@?@@:@?@@???>???>@@@@@?@????@?>@@??@@@@??@??@?:@@?@?????@A@@AA@@@@A@A@AAAA@A@AA@;@A@A@AA??@A@AAAA@BA@BABABBABBAABA?>;<# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJAJJJJJJFJFJJJJJJJJJJJJJFJ# UQ:i:0 AS:i:151 +HT2V5CCXX160630:1:2204:12205:22001 99 5 156355148 60 151M = 156355420 423 CAAAATACAAAAATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGA ?@>??A@?@????@?@@@@@?@@@@???>?@?@@:@?@@?@@>>>?@@>@@@>@????@?@@>??@@@@??@??@?:@@?@?????@@?@AA@@@@A@?@AAAA@A@AA@;@A@A@AA@@?A@AAAA@A@ABBBA@BABBAABBAA?><<@ MC:Z:151M MD:Z:3C147 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJF UQ:i:37 AS:i:147 +HT27VCCXX160630:4:1118:12479:45400 147 5 156355160 60 151M = 156354931 -380 ATTAGCTGGCATGGTGGTGTGCGCCTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAA ##7@?AB8B@BB@A>?ABBBAA?9@>>AAAAAA@=???@@?=A=@@AAAA?@@@@A@;AA@A@@@@@A@>@A@>>:?@?@?@@@@?@?@@<:?@?@<@@??=?><@@@?>??@@@?@@>@??>@@?@??5@????>?@?@>?>5< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:##A>@;>;.>7=2>:??>>?>;:=?>>?*:=1<=<5?<:>93>3:?@?@<>>038<;6<=?:;3?60?=?:>?:*=32;<=5/9>%3721;>A@?=9@*3*;@@@@@>:##### MC:Z:57S94M MD:Z:148^A3 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:1 MQ:i:60 OQ:Z:AAFFFAF<-A7FAJFFFJJFJFFJFFFJ<7FJJJJ-@:>@A:@>@@?@@??>=@@@@@??@????@?@@@>>@@@@>?@??@?9@@?@??>>=@@???@????@?@?@?@@???@@>:?@?@?@@>>>@>AA@A?A@@AAA?AA@AA@?AA@A@A?@>?A@?AA@A=@AAA?AAAAA?BA?@><403()<2&)-6)?=/;=3%'2>=7;5/)5??9<9;;?>>== MC:Z:151M MD:Z:18C8A6A2A30T49A32 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:6 MQ:i:60 OQ:Z:#############################################################################FA<--A7<-?@@??@??>>@@?@???@>>>?@??@@?>@?????@>>??:?@?@?=>>>@@????????@??=@?@??@?@>>:??>??@?>>>>>@@?>>@?>@??>@A?@A??AA@A@A>A;?A@?A?@?@????>@???BA@BBA@?@=;;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJFJFJFJJJJJFJJJJJFJJJJJJJJJJJJJJJFF UQ:i:0 AS:i:151 +HT3HVCCXX160630:1:1108:25043:59112 83 5 156355180 60 127M2I22M = 156354861 -468 GCGCCTGTAGTCCCAGCTATTGGGNAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAAAGACAGAAAGAAA ?,;:8:<2B84=@A>?@?@:1=??#5??97@@AAAA@?A@9A?;AA@;@>@@@A<@??2@??>@>@;>@>@?@=@>=:>@?>1@@?=?@<@<@@?>>?@@@;<<;<<=>@?>2-:>?>>@??@??@@???????????@??@@??@@>:>? MC:Z:151M MD:Z:24G124 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:3 MQ:i:60 OQ:Z:F-JA<7<-F7)FFF7AFAA7-FJF#)JFA7JJJJJJJFJJ7JAJJJJ7JFJJJJ7JFF-JJJFFFJ7FJFJJJFFAFJFJJF-JJJFJJ?@?:@0<@???@?@@?/7=@>@@?@.,=<@?.)??A>9@A??=AA@@?@>1@A=?A@@9>A@:@ABAAAABA@@BA@A@;?>B1<A@A???@A?@AA@@A@AA?@A@@A@;@A?@@????@@>?@@>>>?@?@?>?@@>@?@??:?@?@?@????@?@@?@>@??@@???@>?@??@@?@?@?@??@??@@?@??????????@??@@???@???A???A? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:JJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFFJJJJJJJJJJJJJJJJJJJJJJJJFFFFAA UQ:i:0 AS:i:151 +HT27VCCXX160630:6:2206:8643:70223 99 5 156355184 60 123M2I26M = 156355386 353 CTGTAGTCCCAGCTATTGGGGAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGATGGGGAGATTGCAGTGAGCCGAGATTGCCCCACTGCACTTCAGCCTGGCAACAGAGAGAGACTCCATCTAAAAAAAAAAAAGACAGAAAGAAATCCA ?B@@>A??>>@@?@=@?@???;@??@@??@?>?>?@??@?:?@>@??>>>@@??@@??>?@?>?@?@@?@?@?>:?@?@?@?>>>@>@@?@>@??A?=5A>?@A??@A@A@A:A??A>?A=@@>@@@@@@@@AA?AA=BA=B;??@AA?:@A??@@A@;@A@AA>6?@@;@A@?9>??<@@@?>??@@@>@@3@@@?@@???>>???>>>@??@?><>?>>>?;==<>= MC:Z:151M MD:Z:149 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:2 MQ:i:60 OQ:Z:@64:=.B?AAA@@AA@<>:=>2>=A9;A@@A:@@;99>?@>@?@@AA@@?;9@@?A@@@AAAA=@?@@?7>@?@?>@???=@>><:@@??>@@?=6?@@?@@@?@>@??>;9>?@@?@@???????????@?@@@???@???@?@@??=? 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MC:Z:151M MD:Z:46C0A103 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:2 MQ:i:60 OQ:Z:F019=A??@/9=7/1?2@?8/??.?911.:32?>>?>5;78(@<>;=>=@???0?='?@24+'?<25A:A>2;,??A??8/A8AB@AA??;1;@=??@><;9<0*@;580.==>*A6-=>3)A=8><(@@/@@=<3(90=,,???????>@??@??==>>=?9@=?<== MC:Z:151M MD:Z:61A18C5A8A55 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:4 MQ:i:60 OQ:Z:A<<-7AJFA----F?BABBCBBA<<@ABB>+A@B5BBB@A@BBABABAABABB@A?*?B=@AA@@@@@A;>?AAAAA@?@@AAA>AA@AA@@A@@A@@A@@A@?@?@??@??????@?@??@???@@???@@?@?@?=?@@???@?@?@?@@@@??>>== MC:Z:151M MD:Z:61A89 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:1 MQ:i:60 OQ:Z:JFF<>>@@?@??@@@??@@@?@?@?>?@@???@=?@??@@?>??@??@@??????@@?@@@@@?@???@@?@@?@@@>@??@?.>??@??@?@@@?@???@@@@@@@A@@@AA@?@AA@@@AAA>A@@@@A?AABA@BBBABBBBAAA@>;6> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ-FJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJJFJAJFJJJJFFJJJFJJJJJJFJFFFJFFJF UQ:i:0 AS:i:151 +HT3HVCCXX160630:8:1124:14884:40460 163 5 156355330 60 151M = 156355440 261 CCATGGGCTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACATCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGA =;>????@@@@@@@???@@?@?@??@?@@@@???@??@@??????@@?@@@@@>@>??@@?@@?@AA@A@@A@9A>AA@@A@A@@@@@@@@@A@A?@AA@AABAAAAA@BAB?=@BBAAABABABABBBAABBABBAAB=A=BAAA@<:7? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJ=3AABABA>B>>912?5*9A>/@1=@9?B?:A1@@@?@B?AA@A=?><>@A@@A@@A??A@A@?@@@@@@@@?-?9???@@?@??><=< MC:Z:151M MD:Z:0T33T116 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:2 MQ:i:60 OQ:Z:#JFF--A7--<---FA7A-JFFJFFAAAA7))FA-@@??????@@?@@@@@?@???@@?@@?@@@?@??@?>?>>@?7@?@?????????@?@??@?@@?A@?@AA@A@A>A@AA@@@A@A@A@AAAA@AA@AA@@BB@<;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAFFFJJAJJJJJJJJJJJJJJJJJJJJJFJJAJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:8:2124:17289:50428 83 5 156355337 60 151M = 156355215 -273 CTGCATGTTCAGAGAGAAGAGCAGGGATCCTGGAAAACGTCAGAATTAAACAGTAGGCAGAGGAGGGGGAGGAGAGAAAAAAAAAGAGAAGAGATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAAC @B@??-AB;?2,/16@;*A93+:;()B)@@?>:59?*87.>=-???@??6-;+0)<9?;:@@???>?@1@???>?>@>@??=@@8;??@????@>:?;?<<9@?@?AA?>::= MC:Z:91M2I58M MD:Z:38A4C22T25A58 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:4 MQ:i:60 OQ:Z:A@?@?@??@??@@@???@?>A@??????@@?@@@@@?@???@@?=@?@@@>@??@>;???@??@?@>??>??@AA@@@A?A@@>AAAA@AA@AA@@AA?;@@@B>ABAAABAAA>@@><:: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJFJJJJJJJJJ@;@BAAA@A@4:?7A@7?8>@@@9;+:@65?5@@@@@A?@>8?:1?>>?@>6>.(=>0>4;(@@@>@@@@@@???@???=@>1=@@<@>@?>1?@>?>@>??@?@???>9???@??@??:>>=?@??>>??>>>>?@???@A<:7= MC:Z:151M MD:Z:29A121 PG:Z:MarkDuplicates.1L RG:Z:HT27V.5 NM:i:1 MQ:i:60 OQ:Z:#FJJJJFFJJFJFAJ?@@?@?@@@@???@??@@??????@>=@@@@@?@???@@@@@?@@@?@=>@?>@??@??@?@?????????@?@??@???@@@>@AA@A@A@A>AA@@@AAA@A@AAAAA@A@AA@@AA@;??=AA@AAAAAAAAA@BAAABA?==;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJFFJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJJFJFJAFFFJJJJJJJJJ UQ:i:0 AS:i:151 +HT27VCCXX160630:2:1213:27397:63894 99 5 156355351 60 151M = 156355631 431 AGAAGAGCAGGGATCCTGGAAAACGTCAGCATTAAACAGTAGGCAGAGGAGGTGGAGGAGAGAAAAAAAAAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATG ?A<=@@@@=??>>@?>@@??????:??@@@@@?@???@@?@@>@@@?@??@?3???@?>@>@>????????@?>>>@???@@???@@?@5?>?;@=>?@A2=?@>@>9??>@?>????>@???@?@@>???>@@??@??@@?@?>@?4???@??@?@????????@?@?>????A5?>:@@@A9A@@??@@>?@A@A@A@=@@@AA@@A@?;@@@@A@A@@@B@AAA>B@<>AA@ABAA?A>?=:;< MC:Z:151M MD:Z:58^A93 PG:Z:MarkDuplicates.1O RG:Z:HTJCG.5 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJ<>@B=6BB@AAAAB006AB>?A@A@@AAA?AA?AAB@A?@A??><@A?@A@A>@@@@????@?@??@???@@>>?@A>@?A9@>@@?@?@>@?@?@@@@7@@?@@??@@?:>>>@@?@>??@?@??@@???@>>?@>>?@@>AA@@9? 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MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFJAJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT2V5CCXX160630:1:2204:12205:22001 147 5 156355420 60 151M = 156355148 -423 AAGAGAAGAAATGGTCAGAGAGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCC @89=;@C8>0;='?ABBACAB?B2BBAAAB?@ABABBBBA@A?,B@@A?98?<@A>?A@@@A@@@@@AA@@AA-@@@?@?@@??@??@?@???@@@????:@>??@?@>>?>>>==>>>=??>>>?>@<==;< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1H RG:Z:HT2V5.1 NM:i:0 MQ:i:60 OQ:Z:JJJJA@A>?*/36B?ABABAB>?BAAAA@=?@@@@AA?AA@AA@@AA@;??;AA@A?@@A@@@@@A@@@AA??@;>?@@??@@>?@??@?@?>>@@@????@@???@?@??@@???>??@>?@?@><>A@AA@*@AABAA@ABABAABAAAA@=@A@@@AA?AA@AA@@AA@;???AA@A?@@A@@@?@A@@@AA??@>>?@@?@??@???@@@@?@?@?@@??@??@?@???@@@????@@???@?@??@@???>@>@>?@>>?@?@><;:=3.;2;2A483.B@@@A;9A2'>8=A?5A?@@??A8?6><>?9>@751@???>?=8??=?>9A>=?@@:;@@?;=/@)@@>????@?>?@>?8><6@>@?A80@:@A;2>@=>9>@>@??@@@@?@A>>?@=@9;;??=? MC:Z:1S52M98S MD:Z:151 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:0 MQ:i:54 OQ:Z:##AAFFFFFFAF7-7777F777-FJJJJFAA--9>??>?>@?>?>?>;>?@>==?>?>;>>=>?>?@';@????>:????@?@???@????>9@@?????=@@>?4>?>9AA@AA@?>A?@9?@@@@?@@@?@A@A@@@6>A>@?@@A@@BAAAA6:1?=BB7A9BABA@'%>;99 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:AAFFFFJJJJJJJJJJJJFFJJJJFJJJJJFJJJJJJJJ-FJJJFJJJJJJJJJJJJJJJJJJJAFJJJJJJFJJFFJFJ7FFAAJJJJJJJJJJJFJJJJJFJJJJJJJJJJJAFJFJJFJJJJJJJJJAAB?A6?8BA>@@@3>=A>@AAA;=:8?@>>?>@;@:?@??@>@@:7@?@?@@:?@??@;@???@@@?>?>@@???@?@??@@??;??5???@>;5A?@>;:?@@?>?=A? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:0 MQ:i:60 OQ:Z:#FF<7>@:.>@@@?@?@@@@@@@?@@??@@>:???@8,8?,9@?????>@?(>@??@??@>7,?@@@@@<>?AA@@AA@4>>@@@AAA@@97;@@?@A@A@@AA@@;@?=A&?AA?7B<>A>:@B978>>#### MC:Z:24S127M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAAFAJJJFFFFA7FFJ<-FJJJJJJJJJJJJJJJJJJJJJJJJJJ<-7F->?????0<.;???@@@@?@@?@@=>@@<62?<'9/86>>?;>8/':7=8?A>0)0(3.1.;/>70;A8..6.<5<=8==?>/+1:=@>;@B92?@;A;@####################################### MC:Z:151M MD:Z:113C1T22T8T3 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:4 MQ:i:60 OQ:Z:<-:???@@:@???@?????@@?>@@??@???@@@@?>@@?@@@@@@@?@?@@??@@?@?@@@@AAA@?@@AA@@@A@A@@AA@@?@A@A@?A@6@A@A@:??BAAABBBBABB?ABA<<=<: MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJFJJJJJJJJJJJJJFJJJFJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFJJ7JJJJF7FJJJJJJJJJJJJFJJJFJFFA UQ:i:0 AS:i:151 +HT3HVCCXX160630:8:1124:14884:40460 83 5 156355440 60 151M = 156355330 -261 AGATCAGAAAGTAAGAGCAGTATCAGAAGCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATAAATACCTAA B=<<@AAAABABABABBBBABA@?A@@AA@;@@@A@@A@@@A@@@@@A@@?AA??@@?@A@?@??@??@@@@@?@>@?@@??@??@?@???@@@????@@???@?@??@@?>>?@>@?@@??>@?@?>???@>?@@@@?@@??@@@>>>== MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:0 MQ:i:60 OQ:Z:>>@A?@?@?@??>@?@@?@@>@@???@?8>>>>??@><>?>???8=@;>@@>?@>>>=@????@??@@?@@?@;@?@@??@??@>????@A@?@@@AA?>@A@=?@AA??@@A@A@AA??@A;:? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJFJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFJFFJFJJJJJJJJFFJJJJJJJJJJJJJJJAJJJJJJJJJJFFJJJJJJJFJJJJFFJFJFJJJJJJJJJJJJFJJFFJ<>?>@@@??@?@?@@??@????@?>?@@@????@@???@????@@????@??>?????@?@???>?@??@??>>@@?>@@?>@A??>=? MC:Z:16M2I133M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:#AFFFFJFJJF)JFJFJJJFJJJ8+(&;?8.<>;=/>49;4@@A;@==A>A;18(?@@??@??@<)<;@??>>>@<=2@*@>>1)??;>>>@<@?>>?@?@>???@@>?@@@@?>@??@=??@>?89< MC:Z:151M MD:Z:18T26T26C76 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:3 MQ:i:60 OQ:Z:#####AJA77<-7A<-7-77--AA-=9?>>>>=@>==>>?@?=>>?>???>=>@?>>?4>?>?>?>>?>=@??@??>>=??@>=>==@??>>??>=:>@>?=????>A?@@=??@A@=@@@@?@@??@;??A@?A@@@;AA@@@@=@B@@?@>=99> MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ)$3>?3@?@?===??>?;;;:;@>=?@?9.@@@AA2A@AA@@?A)?@A?@@?A<@;@@>?@?=<.>>?=@0?=?A?04>B;4&&2+'286@?<@1?@1;?B@?@0*7A1AABBBA@?2@=?+ABAAABAAAAABB@?AA@@A@?@AA@A=@A@@AAAAA@A@A@AA@@A@?@?@>?>@@@??>?@@???@?@??@????>>0@?@@???@?@???=@@??@>@@?@?>>@@?>@@?@@@@>@@?@>?=?@??>@>@?@@?>>@? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:JJJJJJFA-FJJJJJJJJJJJJFJJJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF7JJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJFFFAA UQ:i:0 AS:i:151 +HT3HVCCXX160630:7:2123:30157:1274 99 5 156355468 60 151M = 156355632 315 GCCGGGGCAAGGAAGAAAACATCCAGGAGGGATGTAAAGTCATATGTACAATAAAGTCTTAAAATAGAAACAGAACTTAAATAAAACACACAGGGAGAGGTCCTGGATATAATAAATACCTAAGCTAATAATTAATGAAATTGATCATTGT ?>=4?@?@@?@??>@??43=?@???>??@???@@@@??@@?>>@@@@@?@?@@>?@@??>@>??@@@??>?@@>?>@?@??AA>??@A@A@AA@@??1?>?@@AA@@A>?@9>>@@@A:@AA@@AAA@@B??@BABBAAA?@A@?@???@????>@??>@@??@???@@@@??@@?@@@@@@@>@?@@??@@?@?@???@@@???>>@??>@A@??@@???>@>@>@@@@@A@A@A@?AA@@AAAA@AA@@AA??A>@AAAA@A@@BABABBAAABAA:BABA?>=;? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFA@-A=AAA;@BB@@B>@@A>=@?A<@@?@@@AAA=A@6@?<=>:@7?@???@?@???=@@??@@@@?@>???@?=@@?@???>?>?@>>>?:????1@?@?@@?@@=?>?????>?>;;>?@9,7<>;8/*.568;->//>.2.+9@?<>??)0>7-2@?@.5)=@@@A@?@@07-;/=>A@@@A@@@?2>)9?0530*=<6':&9?@############################################## MC:Z:151M MD:Z:50T50T4T15T23T4 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:5 MQ:i:60 OQ:Z:AAFFFJJJFFJJJJF78@?<@>??@?@??@/??>-:;<;9=<<;@;@=:?<9?<:9?@;.;?;=0?<<@?924+@??@???:?4@-;02?;?;???=<;>?@>><<1 MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:0 MQ:i:60 OQ:Z:#############################FA-ABAB?BABAABBAABBBBABAA@@@A@AA@@A@;AA@@A?@A?A>@A@AAA@A?A@?>?@A@@@?A@@@@????@??@???@@@@@?@??@@?=&>=>>@??@@?>?>=<= MC:Z:151M MD:Z:134T16 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:1 MQ:i:60 OQ:Z:JJJJJFF7JFJJFJAFAA7-A7?A@@@???@?@?@@:?@??@??@@@?@?@?@?@??@@??@@?@@@@@???@?@@?@@?:@@??@??@?@?@@?@@@?@?@@???AA?@@?AAAAA@@A@A@@AA@@AAAAA@AA@AA@@AAAAAA@BABABA@ABAABBAABA?><9@=9?@?>>?;@;@>@??3@6@??3?;;:<9-.=?2@?8?;+3;@4?7>?@+9>A?=&AA:>;@A@<9<@A@(7,(:AAA:,=?@,2*0?;88? MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:0 MQ:i:60 OQ:Z:AA?:?@??@???@@>@?@>@>@??@????@@@>??@??>?>@@>>@?8?@??@??@?@?@?>@@@?@??@???@@????@@?@@>???@>@@?@@AAAA@@A@?@A@@@@AAAA?@@A@A@@@A@@AA?@ABABAAABABAAB@?><;@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT2V5CCXX160630:4:1211:21745:61907 99 7 4490624 60 151M = 4490905 432 CGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAG ?7>>?@@??@@@?@?@?@?@??@@??@@@@@@>@???@?@@??@?:@@??@??@?@?@@?@@@?@?@@???@@????@@?@@????@??@???@AAAA@A@@AA@@AAAAAA@@@A@A@@@A@@AA@?AAABABABABAABAABBA?>;;A MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJJJJJJJJJJJJJJJ UQ:i:0 AS:i:151 +HT3HVCCXX160630:6:1122:26768:41778 1123 7 4490624 60 151M = 4490905 432 CGATCCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAG >5@>@>@?@??@@??@<@?@@?@???@?@@?>??:@@?>@??@?@?@@?@@??@?@@???@@????@@?@@??>?@??@?@@A@A@@?A@@AA@@AAAAAA@@@A@A@@@A@@AA@@BBABABAAABAAB@@BBA?>;=# MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:0 MQ:i:60 OQ:Z:AAAFFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJAFJJJJJJF# UQ:i:0 AS:i:151 +HT27VCCXX160630:1:2203:5812:46859 147 7 4490628 60 151M = 4490309 -470 CCTCCTGCCTTGGCCTTCAGAATAGCTGTGACCACAGGTACGCACCACCACACTGGCTAATTATTTTATTTTTAGTAGGGTTGGAGTCCTGCTAAGTTGCCCATGCTGGTCTCAAACTCCAGGGCTCAAGTGATCCTCCTGCCTCAGCCTC 8:9@A?AA?@A?>@>>@@??@A@@@@@A>?@>>>?@>?@>>?@@?@??@>?9????@@=@;=>??>?????>>??<=>@?@>?=?>?9?@=?@?>>?>?@=>>:< MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:0 MQ:i:60 OQ:Z:JJFAJJJJFJAJF7J>-B@A@B?<=AAAB>?=BA?B>?@A@AA??@@;@A@?@@@@@A>A@=?@@?@@9>>@=@A@@@??@><:3>>?@>?@=???@?@??@>?@???<<@?@@>==??=>>?=?>@=?=?>??>>@??>?>??=?><= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:77JJJJJA<)JJJFJFAAFJJJFAFJJJJFFJJJJJJJJJJJJJJFFJJJJFJJJJFJJJJAAFJFJJJJJJJJJF7@?@?@>@??@<@?@@??@?:@@?>@?8@?@?@@?@@@7>?@@??==@????=@>;@????@?>@??4=?@@:=A@??A;?;A?&486;:@)8;7/4=+39?694)+3=28+/03'/8@/98>*,@@77:: MC:Z:23S128M MD:Z:118C13T2T15 PG:Z:MarkDuplicates.1M RG:Z:HT27V.4 NM:i:3 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJ7AJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJAJ:;<>ABBAAB=BAA@@:@@@?@?#@?=<=<:=>@:@<*=6?@A@AA??@>91?@@A@@A@;??>@@=?@>@@@@?=>@?@???@??<@??>>>>?@?>?>?=@8;@8=?@8@?4;=><<>=<@?@@@@@>>;?? 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MC:Z:151M MD:Z:60C79A0C9 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:3 MQ:i:60 OQ:Z:JJJFJJJJJJJJJJJJJJJJJJ9;<>A@BAA2BCBB?A?;B@A@BAB@A@BAA@A@;>AAB@@AAA@@4>AA@@@@@=AAAAAA?@?@?@?<@@??=@>@?@@@?@??@@@????@@??=?@??@????@??;>= MC:Z:151M MD:Z:57T1C79A0C10 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:4 MQ:i:60 OQ:Z:FF7JFFFAFA-JJJJJJAJJJ<@BAAAB@AAB=:AA;=???@AA?>@9>@>?@A>9?A@?A@<6?A@@>=@?@??>;@>??@?@?@???%84,:8)<>,8;@???>?=?==??>>?=?==?=>>>?>@>@4>>@?>9< MC:Z:151M MD:Z:52C79A0C17 PG:Z:MarkDuplicates.1I RG:Z:HT27V.8 NM:i:3 MQ:i:60 OQ:Z:AJ,@;(,8(??:4+.?9>6?@>=5?>>??>9???>8.,?=:%:>:;<><=8-+?7?@@?&<)5??>>?=;=0?:>><@@@>@>???=?=?? MC:Z:93M58S MD:Z:51C14C30C3G30C18 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:5 MQ:i:24 OQ:Z:###############################AAFAFJ<<-----9?@@?@@???@?@?@???@?@???@????@@???@@?@@@>??@?@??@@@??@??@@@??@?@>?@??%=?@@@??>??@@>@@@A@A@A@@AA@@@AAA@@AA@A@@AA@@AA@AAA;AAAAAAAAAAA@>=8AAAB@>AA>BA?ABABA@@A@@@@AA@@@A@@AAA@@@A@A@@AA@@@A@@>@@@??????@???@?@@@??@??@???????@?@??@@>=>@@@?>@@?@??@@@??>>@?>>@?@??@?>??@@?>>????>@@?@@@?>?=? MC:Z:151M MD:Z:44C79A0C25 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:3 MQ:i:60 OQ:Z:JJAJ?A@B@AAB@AABABAAAA@@@@AA@@@A@@AAA@@@A@A@@AA@??A@?AAA@?@?@??@??@@>@@@??@??@?@???@?@?@??@@>>>@@@??@@?@????@????@>>>??@???>>??@@??@@?>=>@@?@?>?@A>>>=? MC:Z:151M MD:Z:41C79A0C28 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:3 MQ:i:60 OQ:Z:JJJJJJJJJFFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:123 AS:i:136 +HT27VCCXX160630:7:1122:14489:39774 83 7 4490816 60 151M = 4490663 -304 TGGCCTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGG #89=9+0@4342A)A>AAA@@@@AA@@@A>?AAA?@>A@A?@AA?@@A@@AAA?@>?@>?@??@@?@@@>?@??@>@=??@?@?@??@?>??@;@??@@?@?>@5@>@>>@????=@?@@>???@@@?@@???>@@?@@??>@>>A@=49> MC:Z:151M MD:Z:38C80C31 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:#AFA7--A-<7-F-FFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJFJAJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFJJJFJJJJJJJJJJ@AA@@@AA@@?A@@AAA@@@A@A?@AA@@?@>?@AAA@@@A??@??@@?@@@>?@??@?@>??@?@?@??@@????3=??@@?@??@=@?@>?@?>?@?@>?@>???@@@?@@????@@?@@??@@>>@@A<;<:? MC:Z:151M MD:Z:36C79A0C33 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:3 MQ:i:60 OQ:Z:JJJJJFJJJJAJJFFJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF-FJFJJJJJJJFJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:123 AS:i:136 +HT3HVCCXX160630:4:1217:8186:7023 99 7 4490820 60 151M = 4491395 664 CTCAAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCGGC ?@>?@A???@?@???@????>@???@@?@@@@??@?@?>>>@?????@@@@?@?@>?@??@@?@@@?>>??>?@???=?@???=@@?@@AA??@AA@A@@AAAAA@A?'>9A@A?0>@@@@A9@?@;?@?ABBAAB?ABB+@BBB??>7## MC:Z:62S89M MD:Z:34C79A0C35 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:3 MQ:i:60 OQ:Z:AAF?>=???@?@???@??????>=>@?????>>?@?@=?@????@??@@@@?@????@??@@?@@?=>@??@?@>??@?@>@??@@?>?@@@;?@A@@>?@AA@A>?@@@@A@A>A??8@@A?@@AA?@0=>@@AB@@A<@@ABB@?@7:;# MC:Z:151M MD:Z:33C80C36 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJAJJJJJJJJJJJJJJJAJFJAJJJFFJFJFJ-7FFFFJFFJAJJJJJJJJJJJ# UQ:i:82 AS:i:141 +HT2V5CCXX160630:4:1212:30919:36030 147 7 4490823 60 151M = 4490528 -446 AAGGAAGATTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGA #?5=??-221@@1@=@<@@@@9A?@A@:@A??.A=@A?@@@@;6?@?8>=6?A>>@>?;@)0?@@=???>>;@@>?@@??@@@??@:??>=<= MC:Z:151M MD:Z:31C79A0C38 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:3 MQ:i:60 OQ:Z:#A7AA7----7F<--A7-FAJJAAJFJ<-@@?@??@@@?@?>@???@???@@????@@@?@??>??@@?@@??@??>@?@??@:?A?@;=> MC:Z:151M MD:Z:30C80C39 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:2 MQ:i:60 OQ:Z:FFJFFJJJJJJJJFFJJJJAAJJJAJJJJJAJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJFJJJAJJJJJJJJJFJJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFAAA UQ:i:73 AS:i:141 +HT2V5CCXX160630:2:1108:8877:31353 99 7 4490831 60 151M = 4491383 588 TTTTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATT ??5>@@???@@???@??@@@?????@?=@@?@?????@?@??@@>=?>=@??@@?@=?A@A@A@@A;@@A@A@?A@@@@AAA@AAA@@AAAAAA@@ABAABCBAABAB>@A?===? MC:Z:108S36M7S MD:Z:23C79A0C46 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:3 MQ:i:40 OQ:Z:AA-FFJJJJJJJJJJJJJJJJJJJJJJAJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFJJJJFJJJJJJJJFAJAAJJJJJJJAJJJJJJJJJAJJFJJJFJJFFJJJJJJFFJJFFJFFJJJJJJJJFJJJJJJ)7FFAFJFJ<<< UQ:i:119 AS:i:136 +HT27VCCXX160630:6:2119:26961:59095 99 7 4490833 60 151M = 4491396 592 TTAAAAATAAAAGTTATGTTCTTGGATGTTTGAATGCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGATGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGT 2A=>?@?@????@???>@???@@@??@@???@??@>?@>@?@@>@?>@@?@?@??@>>@@@?>@@?@??@?@@@????>??@A>A@?@7@A@A@A@?@@@A@@A@@@AA@@9AAAAA<@>@AA@@BA?@><=? MC:Z:122S29M MD:Z:21C80C48 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:2 MQ:i:40 OQ:Z:-AFFFJJJJJJJJJJJFJJJJJFJJJJJJJJFJJJAJJJJJJFJJJJJJJFJJJJJAJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJAJJFJFJJAJJJJJJJJJJJJJJJJJJJJFJAJFJJJJFFAJJJJJJJJJ<>??@@???@??@@@?????@??@@???@??@@@@?@?@??@??@@?@@@??@ABABBB?BCBBAA>?ABAABBAAABA?A=9=;>@BA@B??@AAAAA@@A@@A@A@@@A>A@A@@AA???A@A@>?@@A@@AAA?@??@?>>@@@?@@???==@@?@@????@@?@@==:@??@@@??@9?@@@??>@?>@@@?8>< MC:Z:151M MD:Z:20C80C49 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:2 MQ:i:60 OQ:Z:99<>AAA@CBBBBBA@AABCAABBAA@@BABABBA<>A@?B@@ABABBA@@A@@A@A@@@A@A@A@A@@@AA@A@@AA@?@??@>???>@??@????@@@?@@????@@?@@8=>= MC:Z:151M MD:Z:19C80C50 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:2 MQ:i:60 OQ:Z:FF7A;>??@@?>@?@??8?=:89@=??@??@?@?;//?????>@@?@@???>@?>?9>8@A@A@@@@AA@@@(048>A>@>@0/>?>A???>?>@@6@A@0A1<2A3<6=>BBA??@@@??@??@@@>?@?@@?@??@@?@@@??@?>@?@???@?@>>??@@>>>@@@??A@?@??@@@@@?A@?>>A@AA@@?B@?+>?AAAABAA<=BBA@A>?9=?# MC:Z:151M MD:Z:3C79A0C66 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:3 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJFJJJFFJJJJJJJJJJJJJFFJJJJJJJJJFFJJJJJJJJJFJJFFFFJJJJJJJJFJJJJFF>@@@@?@?@??@??@@?@@@??@=?@=>???@?@?@??@@>>>@@@??@@>@=?@@@?@??@?8>A;A@9==@=9A=A@AA@9:@AA@AA@@A?>@AAA?>-63;AA@;6@A@BAAB>?A?A@AAB=<:?@?=?@??@@@@?@?@@?@>=@@?@@@??@>?@?@???@?@?@??@A???@@?@@@A@A@@AAA?A@?A>@@A@A>>A@?=??:?@:>@@@@AA@AAA@B@AABBBAABAAAABAAAACA/;?@<@A0><;9# MC:Z:151M MD:Z:79A0C70 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:2 MQ:i:60 OQ:Z:@ABAA9?@ABAAA?ABABAABAA>9=@A@ABB@AA@AAA@A=@?@@@A@A@?:@@@@?AA@AA=@?<@@=AA@=@A?<@8@<=>:>>>?:<4>>?=;?@=8??0(??@@???@?=???@?@????@=<<== MC:Z:151M MD:Z:72C78 PG:Z:MarkDuplicates.10 RG:Z:HT3HV.5 NM:i:1 MQ:i:60 OQ:Z:>?A?@?@??@??@@?@@@?>=??@>@???@?@?@??@@???@@@>?=@?@>?@@@?@??@???@?@>@@????@@@?@@????@@?@@@@AA@@AAA@@A;@A@A@@@A@@AA@A@@@@????#?>?>A@A@AABABAABAB@><9:@ MC:Z:151M MD:Z:70C55A24 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJFJ#FFJFJJJFJJJJJJJJJJJJFFJJ UQ:i:43 AS:i:144 +HT27VCCXX160630:2:1116:27915:30369 99 7 4490868 60 151M = 4491246 529 GCACAAGTCAACAGATAGGAGAAGAGGAATCTCAAAGCCCCATGACTGAGAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGC <;;;>@@@?@??@@?@@@??@>?@?@???@?@?@=?@@>>>@@@??@@?@?,?@@?@??@?';@?@?3????;@@@?@@????@@?@@??@@?<@AA?@A;@@@????A=?AA=@?@@A?@?@>>?@@A@A@@AA@@:@@@@A?A@:<<<# MC:Z:151M MD:Z:66A0C83 PG:Z:MarkDuplicates.1K RG:Z:HT27V.2 NM:i:2 MQ:i:60 OQ:Z:9=B@ABBA>>@9;>BBBA:B???:A?@@@A??@>@@@???@>@@@>@@??@@@>>@?@@???@?@7@>@?@??>???=?@?>?>@>>>?>?>@>?@@?>=>< SA:Z:7,4489682,+,27S124M,60,0; MC:Z:151M MD:Z:33 PG:Z:MarkDuplicates.19 RG:Z:HT3GG.8 NM:i:0 MQ:i:60 OQ:Z:7JJF2;0A2@<,2,?<>?.==A*:@@?>9>@@97@@9?AA@?AA@>@=A=??.@?@?6;:8?3;>??99=@=>@@;@??>@????@>;??@?@???@??>?@??>>?=><=7?==>#>??>?;== MC:Z:151M MD:Z:4T51C85T8 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:3 MQ:i:60 OQ:Z:#FFA)F-FF<-FF<--FA-A-AAA<-)<5@@A9?91<4?A@@AAA@A<&:A@@@>A??A?@@@>*4?@@????@@?@@A?@@>>@@5><@:>@@>>2?@??@>?@???@>>?@@@?>?@?@???@?@?@@@@>>??@>>>@?;@@?@@AC?@A? MC:Z:151M MD:Z:54A0C95 PG:Z:MarkDuplicates.1A RG:Z:HT3GG.7 NM:i:2 MQ:i:60 OQ:Z:#####JAJJJJJA-JJJFFJAFFJF7FFF7FA-<7FJJJJJFJJF-AJJJFFJJJJJJJFA--JJJJJJJJJJJJFJJJJJJF7JFJJJJJFF-JJJJJ=>>?@=>??@>??@?@?>;?@@???/=>0;?*<@08>:>=8?@:>>?@<5:=<@??=?.<@=@;=<@A@@A=@?A>>@AAA>@A;@AAA?@@AA@=@9>?)08?'<=B;:@?@*1;::>AB*'328>:32@>:>;AB31<=A@<>;99> MC:Z:151M MD:Z:52A0C48T12A7A27 PG:Z:MarkDuplicates.12 RG:Z:HT3HV.7 NM:i:5 MQ:i:60 OQ:Z:AAA=>A.2<8AAAB@??@>0???;>2A@@@????@??@@?=@???@?@??@9?@@?>>>@>>@@?@??>@????@@?6?@?@>????@???>?>>??@>=>?=>@@?@@@@???@@A<>>@? MC:Z:151M MD:Z:0A47C102 PG:Z:MarkDuplicates.18 RG:Z:HT2V5.6 NM:i:2 MQ:i:60 OQ:Z:#FFFFF<>@@@?>@>=@??@@>??>?@>>>@?@>3=>=??@@????@=>@:>@@;?>>@=5@@??3?@?<<=?A2??@A@A@@?A@?@?A@@?@,>A@@@;<BBBB5?>BAB?@=;9@ MC:Z:151M MD:Z:45A0C104 PG:Z:MarkDuplicates.1F RG:Z:HT27V.7 NM:i:2 MQ:i:60 OQ:Z:-AAAFFJJJJJJJJJJJJJJJJJJJFAFJJJJJAFJJJJJJJFFJF-AJFJJJJFFFFJJJJJJJJJFJFJFJJ>?=?=@>@??@@=??@?@??@@?@??@@@?@??@>:???@?@@??9??@@?@@?<@?AA>AA@?@@@??AA<:A;@AAA@@@A@@@A@A;?@A@@@@AAA?ABAB1??BAB=73@AAA?@@AAAB+ABAA-<=BA3AABB86?> MC:Z:151M MD:Z:45C105 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:AAAAFJ?>>??>>>?@@????:@;???@?@;?@???@?@=@@>?=?7@@?4>;???@@??@@?@@>>@AA>?@7?@AA@@?A@@AA?<@>@@???@AA@@@A>@0<@BAB@@A>B@@@AB@@@AAABA@BA@A??1AAB?>88?B??886= MC:Z:34S112M5S MD:Z:0A39C110 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:2 MQ:i:60 OQ:Z:#AAFFJJJJJJJJJJJJJJJJFJ=>A??@>>?>?>????==?>?>:??@>??=???@??@???@@???@@>??:??@@?>>@??AA@A@@@@?@?=;@>?@A@A@?@A7A@?A@A?@>7@@3?@??AA>BABBAAABBA@BA>AB7?AAA@>=<::# MC:Z:151M MD:Z:33A0C116 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJFJJJJJFJJJJJJJJJJJJJJJJJJJJFJFJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJAJJJJJJFJF9:=>@@A8)=?51@9@31'%9>=:5&=11='=9?@@@=.?=;8?=2?=?>;4?<=25@:>?<<-0,?8?@@52)9)?79(0<0<9>?:?5)>??2>>?=?=8>>@>;8?@@?>=>>>>><>7.>?>>===?<==>@==>= MC:Z:151M MD:Z:9T16T3C46G73 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:4 MQ:i:60 OQ:Z:JJJJFJJJA-F<<-JAF<7-)FFA@AAA@@A;@A@A@@@A@@AA?A@@@A@@@@AA@@?@?@???@>@??@?@????@???@??@>?@@@@???@@@?@?@@@??@@???@??@?>>;;= MC:Z:151M MD:Z:29A0C120 PG:Z:MarkDuplicates.1E RG:Z:HT2V5.4 NM:i:2 MQ:i:60 OQ:Z:JFF<7AJFJFFFAAFFAAAABAB>BA@>@@AA?:@@@A@@@?@A?@?@?@??@@@@??@?@????@???@??@@<@@<@????@@?@?@@?>?@@???@??@???;;= MC:Z:151M MD:Z:29A0C120 PG:Z:MarkDuplicates.Z RG:Z:HT3HV.6 NM:i:2 MQ:i:60 OQ:Z:A7>?@@@@@?@?@@???@?>?>>?<==@>><><>???@>?@@?>?@??>?@??@4?>=@>?????;===/=?@?@>??>>>0;=>?A@?A>?@@;;?@@@A9@A.0>A@@1;@@A@?;;@@?01@@AA2AAAA31@>B?A@;7<<## MC:Z:118S33M MD:Z:20A0C129 PG:Z:MarkDuplicates.15 RG:Z:HT3HV.4 NM:i:2 MQ:i:18 OQ:Z:AAFFFJJJJFJJJJJJJJJFJAFJ7F@@???@?@???@?@??@?@????@???@??@@?@@????>@@@?@??@@???@?>????@?@??@@???;?>>== MC:Z:151M MD:Z:20A0C129 PG:Z:MarkDuplicates.11 RG:Z:HT3HV.8 NM:i:2 MQ:i:60 OQ:Z:7JJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJAJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFAA UQ:i:82 AS:i:141 +HT3HVCCXX160630:2:2207:10165:25956 99 7 4490917 60 151M = 4491485 719 GAATAGTGGTACCCTTGGTGGAAATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGCCCTAAGCAGAAATGCCTTGCAAATGGGTGGAGATCCAGGACGGGAACTG ?@>?@A@@?@@???@?@?@@???>:>@?@@????@@?@@??@@??@@@??@:?@@@???@??@@?@@??@??>?@@???@?@@??A?A<>@?A@@@@?@@@A>@A?@A?AA@@@AAA@A@@AA?:?1@@@AAAAAB@@BBA=A<@@@67=A MC:Z:151M MD:Z:17A0C132 PG:Z:MarkDuplicates.13 RG:Z:HT3HV.2 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJF===<=:??=?>?(?=?>=9?+9<9:59>0<*>>86=+51;8@>2?><;9-0<8<;849=0/'9;*8??>-9::?>459:527:33@???5*,=<6994@?@?A@A@A*3&:@+17<5>+1?@>>*9@77;%-=A######## MC:Z:151M MD:Z:10A0C58T47T20A11 PG:Z:MarkDuplicates.1N RG:Z:HT27V.1 NM:i:5 MQ:i:60 OQ:Z:AAAFFJJ7FAF7FFFJFJ-FFFJFAJ-7FF<?>;@>@?>??=>>??@>??>>==??>??>=>?9??@@??>:??@@>>=@?>???@????=?3>=??>?@>@?;;@=@>>?>@??>>;=???<>@?>@??@==>@A?>@?@??>?@@@@9>=6A;@@=?A@??7=:>??B?9A;=<;> MC:Z:151M MD:Z:10A0C139 PG:Z:MarkDuplicates.1J RG:Z:HT27V.3 NM:i:2 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJAJAJFJJJJJJJJFFJFJJJJJJJJJJ<?@=@AA@A@@?A@@@@AA@@@A@A@;>A@?@@@@=??@@A@@@A@@A??@@@@???@=@?@?@@@??@@???@??@?@??@@?>?:?????@@?@???@?><== MC:Z:151M MD:Z:7A0C142 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:2 MQ:i:60 OQ:Z:#F<7??@@?=?@???>@@?@?>>@@>>?@@=>@9=@@?>??@??@@?@???@>>??@@???@?@???@?@??@?@>=??@>>>@??@@?AAA@@@?@AA@A@AAA@@?A??:>?@A@A@@AA??A;@@AAABBABA;AB@@>;4? MC:Z:151M MD:Z:6C144 PG:Z:MarkDuplicates.1B RG:Z:HT2V5.3 NM:i:1 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJ7FJJJJJJJJJJFJJJJJJJJJJJFAJFJJJJJJ UQ:i:41 AS:i:146 +HT27VCCXX160630:6:2220:13930:25306 163 7 4490939 60 151M = 4491364 576 AATAGATAAAAATAATAAATGGGCTGGGCGGCTGACCTCCATTGTTTGGGACATTTTGAGTTTGAGACAAGGGAAGGGGCCCTAAGCAGAAATGCCTTGCAAATGGGTGGAGATCCAGGACGGGCACTGAGTTCCCTACGGGAGCTGTAGA ;;>:@>@>>>?=@>>?>>>>?>?>?>>>?9>>>>===>>>;@@@??@@;>?:@@???@?@;@?@??4&99=?>=*??>????@@@A@>A@@?@A?>??A?A>2>@@?@A@@A*967>A?>?9@@&:@=A>B31?'8B:@5>AABAA?<::= MC:Z:151M MD:Z:124A9A16 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:2 MQ:i:60 OQ:Z:=@>@>>>>>@>>?>>>:?>?>?>;><8>>>:7==392?@><=0<;>>?:@@1=>@=@11=<7??>@?@??+=;??????A@>?@AA>=?@=8>?=A;A6?@@@9:=@@A@@>?AA<9?6A?>A@?B;;3<)?'=6@<>?=BA>;=7>= MC:Z:32S119M MD:Z:151 PG:Z:MarkDuplicates.1G RG:Z:HT27V.6 NM:i:0 MQ:i:60 OQ:Z:AAAFFJFJJJFJJJJJJJJ>??>??>>??>>@@?==@9>??@???@??<@?@???@>>??@@???@?>?>?@>@?@@?@>>=@A>?>A@>@?@A@AA@@@@@?>@?AAA@@AA??@@?;@?@AABA@BBAAAAABA=B?74=AA:ABABBA@?887@ MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.1D RG:Z:HT2V5.5 NM:i:0 MQ:i:60 OQ:Z:AAFFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJFJFJJFJJJJJJJJFJJJJJJJF<@?AAA>A>AAA;@AA@>5#@??@@@A@@@A@@@=AA@@@A@A@?@A@A@@<@A@??=@???@??6@?@@@@??=@?@?@?@@@??@@???@??@?@<>@@???:?????@@?@??>@>@@?:???@@@@?@@??@???@@@<>>? MC:Z:151M MD:Z:24C126 PG:Z:MarkDuplicates.14 RG:Z:HT3HV.1 NM:i:1 MQ:i:60 OQ:Z:JFJJFFF<=<$8>?@<>?9??>?@??=6@@??8@?@.*=@?A?';:?@@/::6>@3@A3?>A@@A?<;?AB?AA6':A2=36;<1,626CB=:@=3=&>@1B,<*A;AA####### MC:Z:127S24M MD:Z:120T30 PG:Z:MarkDuplicates.1C RG:Z:HT2V5.2 NM:i:1 MQ:i:36 OQ:Z:AAFFF<-JJJJJFFJFAJJJFAJJJJFAFF>@@?@@@@?>?@@@=@?@@@???@?8?@??@?@>=?@?>?9?>>>?@@??=??@>@@>9????@@@?@??????>@?@?A??=<= MC:Z:151M MD:Z:151 PG:Z:MarkDuplicates.16 RG:Z:HT3HV.3 NM:i:0 MQ:i:60 OQ:Z:JF