From afd692fb6476daa27533f40fe2d902ac01cd26db Mon Sep 17 00:00:00 2001 From: Yossi Farjoun Date: Fri, 9 Dec 2016 16:10:40 -0500 Subject: [PATCH] - correcting DUAL_INDEXED adapter sequence according to the documentation (page 17 of http://support.illumina.com/content/dam/illumina-support/documents/documentation/chemistry_documentation/experiment-design/illumina-adapter-sequences_1000000002694-01.pdf) and also inspection of read sequence from short inserts. --- src/main/java/picard/util/IlluminaUtil.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/java/picard/util/IlluminaUtil.java b/src/main/java/picard/util/IlluminaUtil.java index 03732aff9..93696bb22 100644 --- a/src/main/java/picard/util/IlluminaUtil.java +++ b/src/main/java/picard/util/IlluminaUtil.java @@ -144,7 +144,7 @@ public static byte getSolexaQualityCharFromFourQualities(final String[] qualitie NEXTERA_V2( "AATGATACGGCGACCACCGAGATCTACACNNNNNNNNTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG", "CTGTCTCTTATACACATCTCCGAGCCCACGAGACNNNNNNNNATCTCGTATGCCGTCTTCTGCTTG"), - DUAL_INDEXED( "AATGATACGGCGACCACCGAGATCTNNNNNNNNACACTCTTTCCCTACACGACGCTCTTCCGATCT", + DUAL_INDEXED( "AATGATACGGCGACCACCGAGATCTACACNNNNNNNNACACTCTTTCCCTACACGACGCTCTTCCGATCT", "AGATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNNNATCTCGTATGCCGTCTTCTGCTTG"), FLUIDIGM( "AATGATACGGCGACCACCGAGATCTACACTGACGACATGGTTCTACA",