diff --git a/build.gradle b/build.gradle
index 6e12edd5d..10447e69d 100644
--- a/build.gradle
+++ b/build.gradle
@@ -47,7 +47,7 @@ jacoco {
     toolVersion = "0.7.5.201505241946"
 }
 
-final htsjdkVersion = System.getProperty('htsjdk.version', '2.10.0')
+final htsjdkVersion = System.getProperty('htsjdk.version', '2.10.1')
 
 dependencies {
     compile 'com.google.guava:guava:15.0'
diff --git a/src/main/java/picard/util/IntervalListTools.java b/src/main/java/picard/util/IntervalListTools.java
index f3aeca7c6..e2370c3d6 100644
--- a/src/main/java/picard/util/IntervalListTools.java
+++ b/src/main/java/picard/util/IntervalListTools.java
@@ -3,11 +3,7 @@
 import htsjdk.samtools.SAMException;
 import htsjdk.samtools.SAMFileHeader;
 import htsjdk.samtools.SAMProgramRecord;
-import htsjdk.samtools.util.CollectionUtil;
-import htsjdk.samtools.util.IOUtil;
-import htsjdk.samtools.util.Interval;
-import htsjdk.samtools.util.IntervalList;
-import htsjdk.samtools.util.Log;
+import htsjdk.samtools.util.*;
 import htsjdk.variant.vcf.VCFFileReader;
 import picard.PicardException;
 import picard.cmdline.CommandLineParser;
@@ -148,6 +144,12 @@ IntervalList act(final List<IntervalList> list1, final List<IntervalList> list2)
             IntervalList act(final List<IntervalList> list1, final List<IntervalList> list2) {
                 return IntervalList.difference(list1, list2);
             }
+        },
+        OVERLAPS("Find only intervals in INPUT that have any overlap with SECOND_INPUT") {
+            @Override
+            IntervalList act(final List<IntervalList> list1, final List<IntervalList> list2) {
+                return IntervalList.overlaps(list1, list2);
+            }
         };
 
         String helpdoc;