diff --git a/src/main/java/picard/sam/AbstractAlignmentMerger.java b/src/main/java/picard/sam/AbstractAlignmentMerger.java index 6b4e0ac43..4183a548f 100644 --- a/src/main/java/picard/sam/AbstractAlignmentMerger.java +++ b/src/main/java/picard/sam/AbstractAlignmentMerger.java @@ -365,7 +365,7 @@ public void mergeAlignment(final File referenceFasta) { if (this.sortOrder == SortOrder.coordinate) { final SortingCollection sorted1 = SortingCollection.newInstance( SAMRecord.class, new BAMRecordCodec(header), new SAMRecordCoordinateComparator(), - MAX_RECORDS_IN_RAM); + this.maxRecordsInRam); sink = new Sink(sorted1); } else { // catches queryname and unsorted