diff --git a/ggd-recipes/GRCh37/vcfanno.yaml b/ggd-recipes/GRCh37/vcfanno.yaml index e888804c..fed1d8e5 100644 --- a/ggd-recipes/GRCh37/vcfanno.yaml +++ b/ggd-recipes/GRCh37/vcfanno.yaml @@ -3,14 +3,14 @@ --- attributes: name: vcfanno - version: 20170331 + version: 20170522 recipe: full: recipe_type: bash recipe_cmds: - | vcfanno_githash=5fcce8db2aeee016ab927c8ca36a715c02f982f9 - bcbio_githash=13ef069207dbd6fa5f85c09c4ad8de176b74c39e + bcbio_githash=5bcfde79c083d5c34f13f81fe578b4606a7cc80c mkdir -p config/vcfanno cd config/vcfanno gemini_baseurl=https://github.com/brentp/vcfanno/raw/$vcfanno_githash/example @@ -19,9 +19,13 @@ recipe: bcbio_baseurl=https://github.com/chapmanb/bcbio-nextgen/raw/$bcbio_githash/config/vcfanno wget --no-check-certificate -O rnaedit.conf -c $bcbio_baseurl/GRCh37-rnaedit.conf wget --no-check-certificate -O rnaedit.lua -c $bcbio_baseurl/GRCh37-rnaedit.lua + wget --no-check-certificate -O dbnsfp.conf -c $bcbio_baseurl/GRCh37-dbnsfp.conf + wget --no-check-certificate -O dbscsnv.conf -c $bcbio_baseurl/GRCh37-dbscsnv.conf recipe_outfiles: - config/vcfanno/gemini.lua - config/vcfanno/gemini.conf - config/vcfanno/rnaedit.lua - config/vcfanno/rnaedit.conf + - config/vcfanno/dbnsfp.conf + - config/vcfanno/dbscsnv.conf diff --git a/ggd-recipes/hg38-noalt/vcfanno.yaml b/ggd-recipes/hg38-noalt/vcfanno.yaml new file mode 120000 index 00000000..69c81b4e --- /dev/null +++ b/ggd-recipes/hg38-noalt/vcfanno.yaml @@ -0,0 +1 @@ +../hg38/vcfanno.yaml \ No newline at end of file diff --git a/ggd-recipes/hg38/vcfanno.yaml b/ggd-recipes/hg38/vcfanno.yaml index c59d3c08..d55a58b4 100644 --- a/ggd-recipes/hg38/vcfanno.yaml +++ b/ggd-recipes/hg38/vcfanno.yaml @@ -3,19 +3,24 @@ --- attributes: name: vcfanno - version: 20170110 + version: 20170522 recipe: full: recipe_type: bash recipe_cmds: - | - githash=ac5890aab096370d41c276d747e6f9eef0bf0867 + githash=5bcfde79c083d5c34f13f81fe578b4606a7cc80c mkdir -p config/vcfanno cd config/vcfanno bcbio_baseurl=https://github.com/chapmanb/bcbio-nextgen/raw/$githash/config/vcfanno/ wget --no-check-certificate -O gemini.conf -c $bcbio_baseurl/hg38-gemini.conf wget --no-check-certificate -O gemini.lua -c $bcbio_baseurl/hg38-gemini.lua + wget --no-check-certificate -O dbnsfp.conf -c $bcbio_baseurl/hg38-dbnsfp.conf + wget --no-check-certificate -O dbscsnv.conf -c $bcbio_baseurl/hg38-dbscsnv.conf + recipe_outfiles: - config/vcfanno/gemini.lua - config/vcfanno/gemini.conf + - config/vcfanno/dbnsfp.conf + - config/vcfanno/dbscsnv.conf