From 14e2723c132ec7d95ffad9072c0ca0f12bdebcd4 Mon Sep 17 00:00:00 2001
From: Bjoern Gruening <bjoern.gruening@gmail.com>
Date: Mon, 10 Jul 2017 18:30:53 +0200
Subject: [PATCH] add mhsmm

---
 recipes/r-mhsmm/bld.bat   |  2 ++
 recipes/r-mhsmm/build.sh  |  2 ++
 recipes/r-mhsmm/meta.yaml | 53 +++++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 57 insertions(+)
 create mode 100644 recipes/r-mhsmm/bld.bat
 create mode 100644 recipes/r-mhsmm/build.sh
 create mode 100644 recipes/r-mhsmm/meta.yaml

diff --git a/recipes/r-mhsmm/bld.bat b/recipes/r-mhsmm/bld.bat
new file mode 100644
index 00000000000..227a2d0f3ca
--- /dev/null
+++ b/recipes/r-mhsmm/bld.bat
@@ -0,0 +1,2 @@
+"%R%" CMD INSTALL --build .
+if errorlevel 1 exit 1
diff --git a/recipes/r-mhsmm/build.sh b/recipes/r-mhsmm/build.sh
new file mode 100644
index 00000000000..af6547bf3c2
--- /dev/null
+++ b/recipes/r-mhsmm/build.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+$R CMD INSTALL --build .
diff --git a/recipes/r-mhsmm/meta.yaml b/recipes/r-mhsmm/meta.yaml
new file mode 100644
index 00000000000..ef9d26572a4
--- /dev/null
+++ b/recipes/r-mhsmm/meta.yaml
@@ -0,0 +1,53 @@
+{% set version = '0.4.16' %}
+
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
+
+package:
+  name: r-mhsmm
+  version: {{ version|replace("-", "_") }}
+
+source:
+  fn: mhsmm_{{ version }}.tar.gz
+  url:
+    - https://cran.r-project.org/src/contrib/mhsmm_{{ version }}.tar.gz
+    - https://cran.r-project.org/src/contrib/Archive/mhsmm/mhsmm_{{ version }}.tar.gz
+  sha256: fab573abdc0dd44e8c8bc7242a1428df20b3ec64c4c194e5f1f907393f902d01
+
+build:
+  number: 0
+  skip: true  # [win32]
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  build:
+    - r-base
+    - r-mvtnorm
+    - posix                # [win]
+    - {{native}}toolchain  # [win]
+    - gcc                  # [not win]
+  run:
+    - r-base
+    - r-mvtnorm
+    - libgcc  # [not win]
+
+test:
+  commands:
+    - $R -e "library('mhsmm')"  # [not win]
+    - "\"%R%\" -e \"library('mhsmm')\""  # [win]
+
+about:
+  home: https://github.com/jaredo/mhsmm
+  license: GPL (>= 2)
+  summary: |
+    Parameter estimation and prediction for hidden Markov and semi-Markov models for data
+    with multiple observation sequences.  Suitable for equidistant time series data,
+    with multivariate and/or missing data. Allows user defined emission distributions.
+  license_family: GPL
+
+extra:
+  recipe-maintainers:
+    - johanneskoester
+    - bgruening