From 8b1d182d20c4b88e60673a5828b8d70cb1f4381f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Daniel=20G=C3=B3mez-S=C3=A1nchez?= Date: Wed, 8 Mar 2017 11:32:42 +0100 Subject: [PATCH 1/2] Update javadoc for Feature --- src/main/java/htsjdk/tribble/Feature.java | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/main/java/htsjdk/tribble/Feature.java b/src/main/java/htsjdk/tribble/Feature.java index 941790f34..b2039bcd3 100644 --- a/src/main/java/htsjdk/tribble/Feature.java +++ b/src/main/java/htsjdk/tribble/Feature.java @@ -27,13 +27,14 @@ import htsjdk.samtools.util.Locatable; /** - * Represents a locus on a reference sequence. All Features are expected to return 1-based closed-ended intervals. + * Marker interface for locatables with Tribble support. + * As {@link Locatable}, represents a locus on a reference sequence and is expected to return 1-based closed-ended intervals. */ public interface Feature extends Locatable { /** * Return the features reference sequence name, e.g chromosome or contig - * @deprecated use getContig() instead + * @deprecated before 05-2017. Use getContig() instead. */ @Deprecated default public String getChr() { From a1674ee77ec22e2fb5fdf45adb56019eecdf8a26 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Daniel=20G=C3=B3mez-S=C3=A1nchez?= Date: Wed, 8 Mar 2017 21:45:45 +0100 Subject: [PATCH 2/2] Address comments --- src/main/java/htsjdk/tribble/Feature.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/main/java/htsjdk/tribble/Feature.java b/src/main/java/htsjdk/tribble/Feature.java index b2039bcd3..9ed852b14 100644 --- a/src/main/java/htsjdk/tribble/Feature.java +++ b/src/main/java/htsjdk/tribble/Feature.java @@ -27,14 +27,14 @@ import htsjdk.samtools.util.Locatable; /** - * Marker interface for locatables with Tribble support. + * Marker interface for Locatables with Tribble support. A Feature represents a record in a tribble-supported file format. * As {@link Locatable}, represents a locus on a reference sequence and is expected to return 1-based closed-ended intervals. */ public interface Feature extends Locatable { /** * Return the features reference sequence name, e.g chromosome or contig - * @deprecated before 05-2017. Use getContig() instead. + * @deprecated on 03/2015. Use getContig() instead. */ @Deprecated default public String getChr() {