From e5dd7b2ff4acef05866841eb96b88f5e4739e0e0 Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Tue, 18 Apr 2017 14:37:10 -0400 Subject: [PATCH] removing scripts/release_picard.sh this script is no longer used --- scripts/release_picard.sh | 152 ---------------------------------------------- 1 file changed, 152 deletions(-) delete mode 100755 scripts/release_picard.sh diff --git a/scripts/release_picard.sh b/scripts/release_picard.sh deleted file mode 100755 index 732234ab1..000000000 --- a/scripts/release_picard.sh +++ /dev/null @@ -1,152 +0,0 @@ -#! /bin/bash - -# The MIT License -# -# Copyright (c) $today.year The Broad Institute -# -# Permission is hereby granted, free of charge, to any person obtaining a copy -# of this software and associated documentation files (the "Software"), to deal -# in the Software without restriction, including without limitation the rights -# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -# copies of the Software, and to permit persons to whom the Software is -# furnished to do so, subject to the following conditions: -# -# The above copyright notice and this permission notice shall be included in -# all copies or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN - -PROGNAME=`basename $0` -USERNAME=alecw - -function usage () { - echo "USAGE: $PROGNAME " >&2 - echo "Tags Github Picard source, checks out and builds sources, uploads build results to Sourceforge.">&2 - echo "-t Build in . Default: $TMPDIR." >&2 - echo "-u Sourceforge username. Default: $USERNAME." >&2 -} - -function tag_exists() { - git tag | grep -q "$1$" - if test $? = 0 - then return 0 - else return 1 - fi -} - -function remote_does_not_exist() { - git ls-remote $1 2>/dev/null 1>/dev/null - if test $? = 0 - then return 1 - else return 0 - fi -} - -function remote_tag_does_not_exist() { - git ls-remote --tags $2 | grep -q "$1$"; - if test $? = 0 - then return 0 - else return 1 - fi -} - -set -e - -while getopts "ht:u:" options; do - case $options in - u ) USERNAME=$OPTARG;; - t ) TMPDIR=$OPTARG;; - h ) usage;; - \? ) usage - exit 1;; - * ) usage - exit 1;; - - esac -done -shift $(($OPTIND - 1)) - -if (( $# != 1 )) - then echo "ERROR: Incorrect number of arguments." >&2 - usage - exit 1 -fi - -if [[ x"$EDITOR" == x ]] -then echo "EDITOR environment variable must be set." >&2 - exit 1 -fi - -# Require actual Java 1.6. This is not necessary for compiling, because can run 1.7 with -target 1.6, -# but this is necessary in order to force unit tests to run with 1.6. -(echo $JAVA_HOME | fgrep -q 1.6 ) || { echo "JAVA_HOME $JAVA_HOME is not 1.6" ; exit 1; } -java_version=`java -version 2>&1 | fgrep -i version` -(echo $java_version | fgrep -q 1.6. ) || { echo "java -version: $java_version is not 1.6"; exit 1; } - -GITROOT=git@github.com:samtools/htsjdk.git -REMOTE=origin - -RELEASE_ID=$1 - -# Since releases are lexically sorted, need to filter in order to have 1.1xx be at the bottom. -PREV_RELEASE_ID=`git ls-remote --tags | grep -v "{}$" | awk '{print $2}' | sed -e "s_.*/__g" | egrep '[.]\d\d\d' | tail -1` - -if [[ -e $TMPDIR/htsjdk ]] -then echo "$TMPDIR/htsjdk already exists. Please remove or specify a different TMPDIR." >&2 - exit 1 -fi -cd $TMPDIR - -# clone -git clone $GITROOT htsjdk -cd htsjdk -ant clean # Shouldn't be necessary, but no harm - -# tag must not exist -if tag_exists $RELEASE_ID -then echo "ERROR: Tag $RELEASE_ID locally already exists" - exit 1 -fi - -# remote must exist -if remote_does_not_exist $REMOTE -then echo "ERROR: Remote $REMOTE does not exist" - exit 1 -fi - -# tag at remote must not exist -if remote_tag_does_not_exist $RELEASE_ID $REMOTE -then echo "ERROR: Tag $RELEASE_ID at remote $REMOTE already exists" - exit 1 -fi - -# tag the branch locally then push to remote -echo Tagging master as $tag and pushing the tag to $remote -# NB: we could use annotated tags in the future to store release notes, etc. -git tag $tag -git push $remote $tag # TODO: should we check this return value in case someone made a tag since we last checked? - -ant -lib lib/ant test - -ant -lib lib/ant clean all javadoc - -mkdir -p deploy/picard-tools/$RELEASE_ID - -mkdir -p deploy/htsjdk/$RELEASE_ID -cp dist/htsjdk-$RELEASE_ID.jar deploy/htsjdk/$RELEASE_ID/ - -# Make all files to be pushed to Sourceforge writable by group so that another Picard admin can overwrite them. - -chmod -R gu+rw javadoc deploy dist - -find javadoc deploy dist -type d -exec chmod g+s '{}' ';' - -scp -p -r javadoc $USERNAME,picard@web.sourceforge.net:htdocs - -cd deploy -scp -p -r htsjdk/$RELEASE_ID $USERNAME,picard@web.sourceforge.net:/home/frs/project/p/pi/picard/htsjdk/