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Pull requests: snakemake/snakemake

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Pull requests list

fix: add assets and use local file links to allow offline reports
#2904 opened May 31, 2024 by fs82 Loading…
2 tasks done
1
3
docs: add badge for bioconda version
#2902 opened May 29, 2024 by fgvieira Loading…
2 tasks
1
feat: add flag to mark files where path should not be modified
#2888 opened May 21, 2024 by fgvieira Loading…
2 tasks done
7
fix: streamlined conda checks
#2869 opened May 10, 2024 by johanneskoester Loading…
2 tasks done
1
fix: parsing fstring with if else on params #2657
#2864 opened May 3, 2024 by sravel Loading…
2 tasks
5
feat: support per rule shell exec setting via resources
#2862 opened May 3, 2024 by johanneskoester Loading…
2 tasks done
2
feat: Prefer papermill to nbconvert
#2857 opened May 2, 2024 by zmbc Loading…
2 tasks done
5
fix: checkpoints inside modules are overwritten bug Something isn't working help wanted Extra attention is needed
#2843 opened Apr 24, 2024 by fgvieira Loading…
2 tasks done
@johanneskoester
1
feat: add monitoring plugin interface
#2830 opened Apr 20, 2024 by cademirch Loading…
@johanneskoester
16
fix: remove extra call to setup_logger()
#2809 opened Apr 13, 2024 by cademirch Loading…
2 tasks done
5
chore: add testcases for issue #1697
#2752 opened Mar 12, 2024 by mawenzy Loading…
3
fix: #2750, does not correctly check time stamps of scripts with wildcards
#2751 opened Mar 12, 2024 by mawenzy Loading…
2
chore(deps): bump marocchino/sticky-pull-request-comment from 2.8.0 to 2.9.0 dependencies Pull requests that update a dependency file
#2675 opened Feb 5, 2024 by dependabot bot Loading…
1
feat: add support for comma in wildcards
#2659 opened Jan 30, 2024 by Feelx234 Loading…
2 tasks done
3
feat: allow input url passthrough to executor backend
#2639 opened Jan 22, 2024 by KrKOo Loading…
2 tasks
1
feat: allow definition of access pattern for input files
#2597 opened Jan 9, 2024 by johanneskoester Loading…
2 tasks
@cmeesters
2
chore(deps): bump vegardit/fast-apt-mirror.sh from 1.0.0 to 1.1.0 dependencies Pull requests that update a dependency file
#2592 opened Jan 8, 2024 by dependabot bot Loading…
1
fix: use conda as the default frontend
#2547 opened Dec 19, 2023 by victorlin Loading…
2 tasks
3
feat: add function to get unnamed arguments from input output files stale
#2509 opened Nov 10, 2023 by SilasK Loading…
1 of 2 tasks
8
chore(deps): Bump amannn/action-semantic-pull-request from 5.0.2 to 5.4.0 dependencies Pull requests that update a dependency file
#2505 opened Nov 6, 2023 by dependabot bot Loading…
1
fix: 'infinite' value cannot pass to R script
#2476 opened Oct 11, 2023 by ghbore Loading…
1 of 2 tasks
2
feat!: Let wrapper log to stderr and stout file seperately.
#2474 opened Oct 10, 2023 by SilasK Loading…
2 tasks done
3
Compiled workflow.include should carry print_compilation keyword
#2469 opened Oct 4, 2023 by kennyworkman Loading…
1 of 2 tasks
2
feat: Add support for Nix Flakes through nix develop
#2453 opened Sep 20, 2023 by GuilloteauQ Loading…
1 of 2 tasks
2
chore(deps): Bump actions/checkout from 3 to 4 dependencies Pull requests that update a dependency file
#2432 opened Sep 4, 2023 by dependabot bot Loading…
1
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